2PTRA

Crystal structure of escherichia coli adenylosuccinate lyase mutant h171a with bound adenylosuccinate substrate
Total Genus 176
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
176
sequence length
459
structure length
454
Chain Sequence
MELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAADAIGYLDAIVASFSEEDAARIKTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQLIDGLKDLAVQYRDIPLLSRTAGQPATPSTIGKEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQRDLTDSTVLRNLGVGIGYALIAYQSTLKGVSKLEVNRDHLLDELDHNWEVLAEPIQTVMRRYGIEKPYEKLKELVDAEGMKQFIDGLALPEEEKARLKAMTPANYIGRAITMVDELKHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
source organism Escherichia coli
publication title Substrate and Product Complexes of Escherichia coli Adenylosuccinate Lyase Provide New Insights into the Enzymatic Mechanism.
pubmed doi rcsb
molecule keywords Adenylosuccinate lyase
total genus 176
structure length 454
sequence length 459
chains with identical sequence B
ec nomenclature ec 4.3.2.2: Adenylosuccinate lyase.
pdb deposition date 2007-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF08328 ASL_C Adenylosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 2ptrA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 2ptrA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2ptrA02
1YFEA 3QBPA 1TJ7A 1K62A 2OHYA 4C6GA 3R6VA 2O78A 1HY0A 3GZHA 2O7FA 2PTRA 2VD6A 2PFMA 3BHGA 3C8TA 4HGVA 2QGAB 3NO9A 1Q5NA 5D6BA 2NYFA 1YISA 1B8FA 4CQ5A 2PTSA 5EYTA 3UNVA 5HW2A 4V2RA 1Y2MA 2O7EA 3CZOA 1U15A 4C5RA 4EFCA 1FUQA 1TJWA 3TV2A 3R6QA 1K7WA 3OCEA 1AUWA 1U16A 2QVEA 2PTQA 3KDZA 1FURA 1GKJA 1GK2A 2RJSA 1I0AA 2O7DA 1DCNA 3R6YA 4ADLA 2J91A 4ADMA 4BABA 4NSLA 3NZ4A 1J3UA 1C3UA 1DOFA 4NLEA 1W27A 5EYVA 3RRPA 2YIIA 4APAA 2E9FA 1TJUA 1YFMA 1KQ7A 4APBA 1FUPA 3RD8A 1RE5A 4EEIA 1JSWA 1GK3A 2O6YA 4C5SA 2RJRA 3KDYA 3OCFA 2X75A 4MX2A 4BAAA 2O7BA 1XWOA 2FUSA 2HVGA 1VDKA 1T6JA 4FFXA 1EB4A 1T6PA 1GKMA 1FUOA 1C3CA 2NYNA 4V2QA 4C5UA 3E04A 5F91A 1HY1A 1TJVA 3GTDA 5F92A 4FLCA
chains in the Genus database with same CATH superfamily
2JAUA 1MH9A 1YFEA 3QBPA 1TJ7A 1U0LA 1XMDA 2D28C 1K62A 2OHYA 4C6GA 3R6VA 2O78A 3U19A 1HY0A 3GZHA 2O7FA 2PTRA 1T9HA 3U13A 1XL8A 1XLYA 2VD6A 2PFMA 3BHGA 3C8TA 3BWVA 4HGVA 2QGAB 2I7DA 3NO9A 1Q5NA 1Z4LA 5D6BA 2NYFA 5M0JA 1YISA 1B8FA 4CQ5A 2PTSA 2RCNA 5EYTA 3UNVA 5HW2A 1Z4QA 4V2RA 1Y2MA 2O7EA 3CZOA 1U15A 4MUMA 4EFCA 4C5RA 1FUQA 1TJWA 1Z4JA 3TV2A 3R6QA 1K7WA 3OCEA 1AUWA 1U16A 3CRW1 1Q92A 2D27A 2PTQA 1XL7A 2QVEA 3KDZA 1FURA 4NFLA 1GKJA 1Q91A 1GK2A 2JAWA 5M0IA 2RJSA 1I0AA 4YIHA 1Z4MA 2O7DA 1DCNA 3R6YA 4ADLA 2FELA 1Z4KA 2J91A 4ADMA 4BABA 4NSLA 3NZ4A 2JAOA 3F4SA 1J3UA 1C3UA 1DOFA 4NLEA 1W27A 5EYVA 3RRPA 2YIIA 4APAA 2E9FA 1TJUA 1YFMA 1KQ7A 1Z4PX 4APBA 1FUPA 3RD8A 3F4TA 1Z4IA 1RE5A 4IQJM 4EEIA 1JSWA 1GK3A 3CI0K 4L6CA 2VSFA 2O6YA 4L57A 4C5SA 5H8WA 4L6AA 2RJRA 3KDYA 3OCFA 2X75A 4MX2A 2JARA 4A15A 4BAAA 2O7BA 1XWOA 2FUSA 4YIKA 2HVGA 3CRVA 1VDKA 4WNLA 1T6JA 1IW7D 4MWOA 2VL7A 4FFXA 3F4RA 4E88A 1EB4A 1T6PA 1GKMA 1FUOA 1C3CA 2NYNA 4V2QA 4C5UA 2FENA 3E04A 5F91A 1HY1A 1XMCA 2YV5A 1TJVA 3GTDA 5F92A 4FLCA
chains in the Genus database with same CATH topology
1YFEA 3QBPA 1TJ7A 1K62A 2OHYA 4C6GA 3R6VA 2O78A 1HY0A 3GZHA 2O7FA 2PTRA 2VD6A 2PFMA 3BHGA 3C8TA 4HGVA 2QGAB 3NO9A 1Q5NA 5D6BA 2NYFA 1YISA 1B8FA 4CQ5A 2PTSA 5EYTA 3UNVA 5HW2A 4V2RA 1Y2MA 2O7EA 3CZOA 1U15A 4C5RA 4EFCA 1FUQA 1TJWA 3TV2A 3R6QA 1K7WA 3OCEA 1AUWA 1U16A 2QVEA 2PTQA 3KDZA 1FURA 1GKJA 1GK2A 2RJSA 1I0AA 2O7DA 1DCNA 3R6YA 4ADLA 2J91A 4ADMA 4BABA 4NSLA 3NZ4A 1J3UA 1C3UA 1DOFA 4NLEA 1W27A 5EYVA 3RRPA 2YIIA 4APAA 2E9FA 1TJUA 1YFMA 1KQ7A 4APBA 1FUPA 3RD8A 1RE5A 4EEIA 1JSWA 1GK3A 2O6YA 4C5SA 2RJRA 3KDYA 3OCFA 2X75A 4MX2A 4BAAA 2O7BA 1XWOA 2FUSA 2HVGA 1VDKA 1T6JA 4FFXA 1EB4A 1T6PA 1GKMA 1FUOA 1C3CA 2NYNA 4V2QA 4C5UA 3E04A 5F91A 1HY1A 1TJVA 3GTDA 5F92A 4FLCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YFE A;  3QBP A;  1TJ7 A;  1K62 A;  2OHY A;  4C6G A;  3R6V A;  2O78 A;  1HY0 A;  3GZH A;  2O7F A;  2PTR A;  2VD6 A;  2PFM A;  3BHG A;  3C8T A;  4HGV A;  2QGA B;  3NO9 A;  1Q5N A;  5D6B A;  2NYF A;  1YIS A;  1B8F A;  4CQ5 A;  2PTS A;  5EYT A;  3UNV A;  5HW2 A;  4V2R A;  1Y2M A;  2O7E A;  3CZO A;  1U15 A;  4C5R A;  4EFC A;  1FUQ A;  1TJW A;  3TV2 A;  3R6Q A;  1K7W A;  3OCE A;  1AUW A;  1U16 A;  2QVE A;  2PTQ A;  3KDZ A;  1FUR A;  1GKJ A;  1GK2 A;  2RJS A;  1I0A A;  2O7D A;  1DCN A;  3R6Y A;  4ADL A;  2J91 A;  4ADM A;  4BAB A;  4NSL A;  3NZ4 A;  1J3U A;  1C3U A;  1DOF A;  4NLE A;  1W27 A;  5EYV A;  3RRP A;  2YII A;  4APA A;  2E9F A;  1TJU A;  1YFM A;  1KQ7 A;  4APB A;  1FUP A;  3RD8 A;  1RE5 A;  4EEI A;  1JSW A;  1GK3 A;  2O6Y A;  4C5S A;  2RJR A;  3KDY A;  3OCF A;  2X75 A;  4MX2 A;  4BAA A;  2O7B A;  1XWO A;  2FUS A;  2HVG A;  1VDK A;  1T6J A;  4FFX A;  1EB4 A;  1T6P A;  1GKM A;  1FUO A;  1C3C A;  2NYN A;  4V2Q A;  4C5U A;  3E04 A;  5F91 A;  1HY1 A;  1TJV A;  3GTD A;  5F92 A;  4FLC A; 
#chains in the Genus database with same CATH topology
 2JAU A;  1MH9 A;  1YFE A;  3QBP A;  1TJ7 A;  1U0L A;  1XMD A;  2D28 C;  1K62 A;  2OHY A;  4C6G A;  3R6V A;  2O78 A;  3U19 A;  1HY0 A;  3GZH A;  2O7F A;  2PTR A;  1T9H A;  3U13 A;  1XL8 A;  1XLY A;  2VD6 A;  2PFM A;  3BHG A;  3C8T A;  3BWV A;  4HGV A;  2QGA B;  2I7D A;  3NO9 A;  1Q5N A;  1Z4L A;  5D6B A;  2NYF A;  5M0J A;  1YIS A;  1B8F A;  4CQ5 A;  2PTS A;  2RCN A;  5EYT A;  3UNV A;  5HW2 A;  1Z4Q A;  4V2R A;  1Y2M A;  2O7E A;  3CZO A;  1U15 A;  4MUM A;  4EFC A;  4C5R A;  1FUQ A;  1TJW A;  1Z4J A;  3TV2 A;  3R6Q A;  1K7W A;  3OCE A;  1AUW A;  1U16 A;  3CRW 1;  1Q92 A;  2D27 A;  2PTQ A;  1XL7 A;  2QVE A;  3KDZ A;  1FUR A;  4NFL A;  1GKJ A;  1Q91 A;  1GK2 A;  2JAW A;  5M0I A;  2RJS A;  1I0A A;  4YIH A;  1Z4M A;  2O7D A;  1DCN A;  3R6Y A;  4ADL A;  2FEL A;  1Z4K A;  2J91 A;  4ADM A;  4BAB A;  4NSL A;  3NZ4 A;  2JAO A;  3F4S A;  1J3U A;  1C3U A;  1DOF A;  4NLE A;  1W27 A;  5EYV A;  3RRP A;  2YII A;  4APA A;  2E9F A;  1TJU A;  1YFM A;  1KQ7 A;  1Z4P X;  4APB A;  1FUP A;  3RD8 A;  3F4T A;  1Z4I A;  1RE5 A;  4IQJ M;  4EEI A;  1JSW A;  1GK3 A;  3CI0 K;  4L6C A;  2VSF A;  2O6Y A;  4L57 A;  4C5S A;  5H8W A;  4L6A A;  2RJR A;  3KDY A;  3OCF A;  2X75 A;  4MX2 A;  2JAR A;  4A15 A;  4BAA A;  2O7B A;  1XWO A;  2FUS A;  4YIK A;  2HVG A;  3CRV A;  1VDK A;  4WNL A;  1T6J A;  1IW7 D;  4MWO A;  2VL7 A;  4FFX A;  3F4R A;  4E88 A;  1EB4 A;  1T6P A;  1GKM A;  1FUO A;  1C3C A;  2NYN A;  4V2Q A;  4C5U A;  2FEN A;  3E04 A;  5F91 A;  1HY1 A;  1XMC A;  2YV5 A;  1TJV A;  3GTD A;  5F92 A;  4FLC A; 
#chains in the Genus database with same CATH homology
 1YFE A;  3QBP A;  1TJ7 A;  1K62 A;  2OHY A;  4C6G A;  3R6V A;  2O78 A;  1HY0 A;  3GZH A;  2O7F A;  2PTR A;  2VD6 A;  2PFM A;  3BHG A;  3C8T A;  4HGV A;  2QGA B;  3NO9 A;  1Q5N A;  5D6B A;  2NYF A;  1YIS A;  1B8F A;  4CQ5 A;  2PTS A;  5EYT A;  3UNV A;  5HW2 A;  4V2R A;  1Y2M A;  2O7E A;  3CZO A;  1U15 A;  4C5R A;  4EFC A;  1FUQ A;  1TJW A;  3TV2 A;  3R6Q A;  1K7W A;  3OCE A;  1AUW A;  1U16 A;  2QVE A;  2PTQ A;  3KDZ A;  1FUR A;  1GKJ A;  1GK2 A;  2RJS A;  1I0A A;  2O7D A;  1DCN A;  3R6Y A;  4ADL A;  2J91 A;  4ADM A;  4BAB A;  4NSL A;  3NZ4 A;  1J3U A;  1C3U A;  1DOF A;  4NLE A;  1W27 A;  5EYV A;  3RRP A;  2YII A;  4APA A;  2E9F A;  1TJU A;  1YFM A;  1KQ7 A;  4APB A;  1FUP A;  3RD8 A;  1RE5 A;  4EEI A;  1JSW A;  1GK3 A;  2O6Y A;  4C5S A;  2RJR A;  3KDY A;  3OCF A;  2X75 A;  4MX2 A;  4BAA A;  2O7B A;  1XWO A;  2FUS A;  2HVG A;  1VDK A;  1T6J A;  4FFX A;  1EB4 A;  1T6P A;  1GKM A;  1FUO A;  1C3C A;  2NYN A;  4V2Q A;  4C5U A;  3E04 A;  5F91 A;  1HY1 A;  1TJV A;  3GTD A;  5F92 A;  4FLC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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