2PTRA

Crystal structure of escherichia coli adenylosuccinate lyase mutant h171a with bound adenylosuccinate substrate
Total Genus 176
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
176
sequence length
459
structure length
454
Chain Sequence
MELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAADAIGYLDAIVASFSEEDAARIKTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQLIDGLKDLAVQYRDIPLLSRTAGQPATPSTIGKEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQRDLTDSTVLRNLGVGIGYALIAYQSTLKGVSKLEVNRDHLLDELDHNWEVLAEPIQTVMRRYGIEKPYEKLKELVDAEGMKQFIDGLALPEEEKARLKAMTPANYIGRAITMVDELKHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Adenylosuccinate lyase
publication title Substrate and Product Complexes of Escherichia coli Adenylosuccinate Lyase Provide New Insights into the Enzymatic Mechanism.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Lyase
total genus 176
structure length 454
sequence length 459
chains with identical sequence B
ec nomenclature ec 4.3.2.2: Adenylosuccinate lyase.
pdb deposition date 2007-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF08328 ASL_C Adenylosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 2ptrA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 2ptrA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2ptrA02
5F92A 1HY1A 1K7WA 2J91A 4MX2A 1K62A 4V2QA 1U15A 1FURA 5HW2A 3GZHA 1T6PA 4FFXA 3OCFA 2HVGA 4C5RA 3NZ4A 1J3UA 3KDYA 3GTDA 1RE5A 1TJVA 3R6VA 4C6GA 1TJ7A 4FLCA 5D6BA 3TV2A 5EYTA 1I0AA 1Q5NA 1XWOA 2PTRA 1VDKA 3OCEA 1W27A 5F91A 4NLEA 2FUSA 1FUQA 4APAA 5EYVA 2E9FA 1FUPA 2QGAB 2RJSA 3RD8A 4APBA 2RJRA 1FUOA 1KQ7A 1DOFA 2OHYA 4EEIA 4EFCA 4CQ5A 1U16A 1YFEA 1C3CA 2QVEA 4BABA 1JSWA 3KDZA 2YIIA 2PTSA 2O7BA 1GK3A 2O7EA 1C3UA 3UNVA 3R6YA 1T6JA 1HY0A 1TJUA 1GKMA 4HGVA 1GK2A 3RRPA 1AUWA 2O7FA 4C5UA 2X75A 2NYNA 1YFMA 3C8TA 3R6QA 4BAAA 2PFMA 3CZOA 2VD6A 2PTQA 1EB4A 1B8FA 2O78A 3QBPA 1DCNA 3NO9A 4NSLA 1Y2MA 4ADMA 2NYFA 1YISA 4ADLA 1TJWA 2O6YA 4C5SA 3E04A 2O7DA 3BHGA 4V2RA 1GKJA
chains in the Genus database with same CATH superfamily
5F92A 2FENA 1HY1A 2YV5A 1K7WA 2J91A 2JAUA 1Z4KA 4MX2A 1K62A 4V2QA 1Q91A 1U15A 1U0LA 1FURA 5HW2A 2D27A 3GZHA 1T6PA 2RCNA 4FFXA 3OCFA 2HVGA 4L57A 4C5RA 4E88A 3NZ4A 1J3UA 3KDYA 3GTDA 1RE5A 2JAOA 1Q92A 1TJVA 3R6VA 3BWVA 4C6GA 1IW7D 1Z4LA 1TJ7A 4NFLA 4FLCA 1XMCA 5D6BA 4WNLA 1MH9A 3TV2A 5EYTA 1I0AA 1Q5NA 3U13A 4L6AA 1XWOA 2PTRA 4YIKA 1VDKA 2FELA 1XLYA 5M0IA 4YIHA 3OCEA 1W27A 5F91A 3F4RA 4NLEA 2FUSA 1FUQA 4APAA 5EYVA 1Z4IA 4IQJM 2E9FA 1FUPA 2QGAB 2RJSA 3CI0K 2D28C 3RD8A 4APBA 2RJRA 1FUOA 1KQ7A 1DOFA 2OHYA 4EEIA 4EFCA 2VSFA 4CQ5A 1U16A 4MWOA 1YFEA 1C3CA 2QVEA 4BABA 1JSWA 3KDZA 2YIIA 2PTSA 2O7BA 1Z4JA 1GK3A 1C3UA 2O7EA 3UNVA 1XMDA 3R6YA 1T6JA 5H8WA 1T9HA 1HY0A 1TJUA 1GKMA 4HGVA 1GK2A 3RRPA 1AUWA 3CRVA 3F4SA 2O7FA 2JARA 4C5UA 2X75A 2NYNA 1YFMA 4MUMA 3C8TA 3R6QA 1XL7A 4L6CA 4BAAA 2PFMA 3CZOA 3U19A 4A15A 2VD6A 1Z4PX 1XL8A 2PTQA 1EB4A 1B8FA 3CRW1 2I7DA 2O78A 3QBPA 1Z4QA 3F4TA 1Z4MA 1DCNA 3NO9A 4NSLA 1Y2MA 2VL7A 5M0JA 4ADMA 2NYFA 1YISA 4ADLA 1TJWA 2O6YA 2JAWA 4C5SA 3E04A 2O7DA 3BHGA 4V2RA 1GKJA
chains in the Genus database with same CATH topology
5F92A 1HY1A 1K7WA 2J91A 4MX2A 1K62A 4V2QA 1U15A 1FURA 5HW2A 3GZHA 1T6PA 4FFXA 3OCFA 2HVGA 4C5RA 3NZ4A 1J3UA 3KDYA 3GTDA 1RE5A 1TJVA 3R6VA 4C6GA 1TJ7A 4FLCA 5D6BA 3TV2A 5EYTA 1I0AA 1Q5NA 1XWOA 2PTRA 1VDKA 3OCEA 1W27A 5F91A 4NLEA 2FUSA 1FUQA 4APAA 5EYVA 2E9FA 1FUPA 2QGAB 2RJSA 3RD8A 4APBA 2RJRA 1FUOA 1KQ7A 1DOFA 2OHYA 4EEIA 4EFCA 4CQ5A 1U16A 1YFEA 1C3CA 2QVEA 4BABA 1JSWA 3KDZA 2YIIA 2PTSA 2O7BA 1GK3A 2O7EA 1C3UA 3UNVA 3R6YA 1T6JA 1HY0A 1TJUA 1GKMA 4HGVA 1GK2A 3RRPA 1AUWA 2O7FA 4C5UA 2X75A 2NYNA 1YFMA 3C8TA 3R6QA 4BAAA 2PFMA 3CZOA 2VD6A 2PTQA 1EB4A 1B8FA 2O78A 3QBPA 1DCNA 3NO9A 4NSLA 1Y2MA 4ADMA 2NYFA 1YISA 4ADLA 1TJWA 2O6YA 4C5SA 3E04A 2O7DA 3BHGA 4V2RA 1GKJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5F92 A;  1HY1 A;  1K7W A;  2J91 A;  4MX2 A;  1K62 A;  4V2Q A;  1U15 A;  1FUR A;  5HW2 A;  3GZH A;  1T6P A;  4FFX A;  3OCF A;  2HVG A;  4C5R A;  3NZ4 A;  1J3U A;  3KDY A;  3GTD A;  1RE5 A;  1TJV A;  3R6V A;  4C6G A;  1TJ7 A;  4FLC A;  5D6B A;  3TV2 A;  5EYT A;  1I0A A;  1Q5N A;  1XWO A;  2PTR A;  1VDK A;  3OCE A;  1W27 A;  5F91 A;  4NLE A;  2FUS A;  1FUQ A;  4APA A;  5EYV A;  2E9F A;  1FUP A;  2QGA B;  2RJS A;  3RD8 A;  4APB A;  2RJR A;  1FUO A;  1KQ7 A;  1DOF A;  2OHY A;  4EEI A;  4EFC A;  4CQ5 A;  1U16 A;  1YFE A;  1C3C A;  2QVE A;  4BAB A;  1JSW A;  3KDZ A;  2YII A;  2PTS A;  2O7B A;  1GK3 A;  2O7E A;  1C3U A;  3UNV A;  3R6Y A;  1T6J A;  1HY0 A;  1TJU A;  1GKM A;  4HGV A;  1GK2 A;  3RRP A;  1AUW A;  2O7F A;  4C5U A;  2X75 A;  2NYN A;  1YFM A;  3C8T A;  3R6Q A;  4BAA A;  2PFM A;  3CZO A;  2VD6 A;  2PTQ A;  1EB4 A;  1B8F A;  2O78 A;  3QBP A;  1DCN A;  3NO9 A;  4NSL A;  1Y2M A;  4ADM A;  2NYF A;  1YIS A;  4ADL A;  1TJW A;  2O6Y A;  4C5S A;  3E04 A;  2O7D A;  3BHG A;  4V2R A;  1GKJ A; 
#chains in the Genus database with same CATH topology
 5F92 A;  2FEN A;  1HY1 A;  2YV5 A;  1K7W A;  2J91 A;  2JAU A;  1Z4K A;  4MX2 A;  1K62 A;  4V2Q A;  1Q91 A;  1U15 A;  1U0L A;  1FUR A;  5HW2 A;  2D27 A;  3GZH A;  1T6P A;  2RCN A;  4FFX A;  3OCF A;  2HVG A;  4L57 A;  4C5R A;  4E88 A;  3NZ4 A;  1J3U A;  3KDY A;  3GTD A;  1RE5 A;  2JAO A;  1Q92 A;  1TJV A;  3R6V A;  3BWV A;  4C6G A;  1IW7 D;  1Z4L A;  1TJ7 A;  4NFL A;  4FLC A;  1XMC A;  5D6B A;  4WNL A;  1MH9 A;  3TV2 A;  5EYT A;  1I0A A;  1Q5N A;  3U13 A;  4L6A A;  1XWO A;  2PTR A;  4YIK A;  1VDK A;  2FEL A;  1XLY A;  5M0I A;  4YIH A;  3OCE A;  1W27 A;  5F91 A;  3F4R A;  4NLE A;  2FUS A;  1FUQ A;  4APA A;  5EYV A;  1Z4I A;  4IQJ M;  2E9F A;  1FUP A;  2QGA B;  2RJS A;  3CI0 K;  2D28 C;  3RD8 A;  4APB A;  2RJR A;  1FUO A;  1KQ7 A;  1DOF A;  2OHY A;  4EEI A;  4EFC A;  2VSF A;  4CQ5 A;  1U16 A;  4MWO A;  1YFE A;  1C3C A;  2QVE A;  4BAB A;  1JSW A;  3KDZ A;  2YII A;  2PTS A;  2O7B A;  1Z4J A;  1GK3 A;  1C3U A;  2O7E A;  3UNV A;  1XMD A;  3R6Y A;  1T6J A;  5H8W A;  1T9H A;  1HY0 A;  1TJU A;  1GKM A;  4HGV A;  1GK2 A;  3RRP A;  1AUW A;  3CRV A;  3F4S A;  2O7F A;  2JAR A;  4C5U A;  2X75 A;  2NYN A;  1YFM A;  4MUM A;  3C8T A;  3R6Q A;  1XL7 A;  4L6C A;  4BAA A;  2PFM A;  3CZO A;  3U19 A;  4A15 A;  2VD6 A;  1Z4P X;  1XL8 A;  2PTQ A;  1EB4 A;  1B8F A;  3CRW 1;  2I7D A;  2O78 A;  3QBP A;  1Z4Q A;  3F4T A;  1Z4M A;  1DCN A;  3NO9 A;  4NSL A;  1Y2M A;  2VL7 A;  5M0J A;  4ADM A;  2NYF A;  1YIS A;  4ADL A;  1TJW A;  2O6Y A;  2JAW A;  4C5S A;  3E04 A;  2O7D A;  3BHG A;  4V2R A;  1GKJ A; 
#chains in the Genus database with same CATH homology
 5F92 A;  1HY1 A;  1K7W A;  2J91 A;  4MX2 A;  1K62 A;  4V2Q A;  1U15 A;  1FUR A;  5HW2 A;  3GZH A;  1T6P A;  4FFX A;  3OCF A;  2HVG A;  4C5R A;  3NZ4 A;  1J3U A;  3KDY A;  3GTD A;  1RE5 A;  1TJV A;  3R6V A;  4C6G A;  1TJ7 A;  4FLC A;  5D6B A;  3TV2 A;  5EYT A;  1I0A A;  1Q5N A;  1XWO A;  2PTR A;  1VDK A;  3OCE A;  1W27 A;  5F91 A;  4NLE A;  2FUS A;  1FUQ A;  4APA A;  5EYV A;  2E9F A;  1FUP A;  2QGA B;  2RJS A;  3RD8 A;  4APB A;  2RJR A;  1FUO A;  1KQ7 A;  1DOF A;  2OHY A;  4EEI A;  4EFC A;  4CQ5 A;  1U16 A;  1YFE A;  1C3C A;  2QVE A;  4BAB A;  1JSW A;  3KDZ A;  2YII A;  2PTS A;  2O7B A;  1GK3 A;  2O7E A;  1C3U A;  3UNV A;  3R6Y A;  1T6J A;  1HY0 A;  1TJU A;  1GKM A;  4HGV A;  1GK2 A;  3RRP A;  1AUW A;  2O7F A;  4C5U A;  2X75 A;  2NYN A;  1YFM A;  3C8T A;  3R6Q A;  4BAA A;  2PFM A;  3CZO A;  2VD6 A;  2PTQ A;  1EB4 A;  1B8F A;  2O78 A;  3QBP A;  1DCN A;  3NO9 A;  4NSL A;  1Y2M A;  4ADM A;  2NYF A;  1YIS A;  4ADL A;  1TJW A;  2O6Y A;  4C5S A;  3E04 A;  2O7D A;  3BHG A;  4V2R A;  1GKJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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