3BHGA

Crystal structure of adenylosuccinate lyase from legionella pneumophila
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
454
structure length
448
Chain Sequence
LTALNAISPIDGRYVNKTRALSPYFSEFALTYYRLMVEIKWFESLAANDTIPEVPALDNKARKFLSDLISNFNESEAEKIKEFEKQTNHDVKAVEYYLQDKFQENEQLKSCVAFIHFACTSEDINNLAYALMIKQAIAQVIQPTIAEIMGSITLLGKQHADVAMLSRTHGQPATPTTMGKELVNFVARLKRPQQQLAEVLIPAKFNGAVGNYNAHVAAYPEVDWRKHCANFVTSLGLSFNAYTTQIEPHDGIAEVSQIMVRINNILLDYTQDIWSYISLGYFKQKTSSTMPHKVNPIDFENAEGNLGLSNALFIHFANKLTQSRMQRDLSDSTVLRNLGVAFSYSLIAYHSVAKGNDKLQINKSALQKDLSENWEVLAEAIQTVMRRYNEPNAYEQLKELTRGQMIDAENLKKFIKTLSIPEEAKAELMKLTPETYTGLATQLVKAFS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of adenylosuccinate lyase from Legionella pneumophila.
rcsb
source organism Legionella pneumophila subsp. pneumophila str. philadelphia 1
molecule tags Lyase
molecule keywords Adenylosuccinate lyase
total genus 163
structure length 448
sequence length 454
ec nomenclature ec 4.3.2.2: Adenylosuccinate lyase.
pdb deposition date 2007-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF08328 ASL_C Adenylosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 3bhgA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3bhgA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3bhgA02
1AUWA 2O7BA 1I0AA 1FURA 2PFMA 2HVGA 4FLCA 1U16A 2J91A 1TJ7A 1HY1A 2RJSA 4C5RA 3QBPA 4ADLA 1K7WA 1W27A 3E04A 3NO9A 1XWOA 2X75A 4C5SA 4CQ5A 1DCNA 1TJVA 1YFEA 4EFCA 3BHGA 1GK3A 1FUOA 1VDKA 2FUSA 1JSWA 5F91A 4EEIA 2O7FA 1FUPA 2YIIA 2O6YA 1RE5A 4HGVA 3OCEA 3GZHA 3RRPA 1T6PA 3KDYA 1Y2MA 3KDZA 1GKMA 3R6QA 5EYTA 3GTDA 1EB4A 2O78A 4BABA 2PTSA 1K62A 3C8TA 2E9FA 1T6JA 4V2QA 4V2RA 3OCFA 2PTQA 3UNVA 2O7DA 4BAAA 1TJUA 1Q5NA 2RJRA 1DOFA 1YISA 3NZ4A 1FUQA 4C5UA 2QVEA 1B8FA 4NLEA 2OHYA 1C3UA 2NYNA 2NYFA 4FFXA 5HW2A 5F92A 2VD6A 1TJWA 2O7EA 3RD8A 4ADMA 1YFMA 4MX2A 1C3CA 3TV2A 3R6VA 1KQ7A 4C6GA 2PTRA 3R6YA 4APAA 5D6BA 4APBA 1GKJA 1U15A 5EYVA 1HY0A 1J3UA 2QGAB 1GK2A 4NSLA 3CZOA
chains in the Genus database with same CATH superfamily
1AUWA 2O7BA 1I0AA 1FURA 2PFMA 2HVGA 4WNLA 5M0IA 4FLCA 3U13A 1U16A 2J91A 1TJ7A 1HY1A 2RJSA 4C5RA 2VSFA 1U0LA 3QBPA 4ADLA 5H8WA 1K7WA 1W27A 3E04A 3NO9A 1XWOA 2X75A 4C5SA 2JAUA 3F4TA 1DCNA 4CQ5A 3U19A 1TJVA 1YFEA 4EFCA 2JAOA 3BWVA 3BHGA 1Q91A 1GK3A 1FUOA 1VDKA 2FUSA 1JSWA 5F91A 4EEIA 2O7FA 1FUPA 2YIIA 2O6YA 1RE5A 3CI0K 4HGVA 3OCEA 3GZHA 3RRPA 1T6PA 3KDYA 5M0JA 1XLYA 1Y2MA 3KDZA 2I7DA 1GKMA 3R6QA 5EYTA 3GTDA 1EB4A 2O78A 4BABA 2YV5A 3CRW1 2PTSA 2RCNA 2VL7A 1K62A 1Z4MA 3C8TA 2E9FA 2D28C 1T6JA 4V2QA 3F4RA 4V2RA 3OCFA 1MH9A 2PTQA 3UNVA 2O7DA 4BAAA 1TJUA 1Q5NA 1XMCA 1IW7D 1Q92A 2RJRA 1DOFA 1YISA 3NZ4A 2D27A 1FUQA 1Z4IA 4C5UA 1T9HA 2QVEA 1Z4QA 1B8FA 4L6AA 1Z4JA 4NLEA 4E88A 2OHYA 1XMDA 1C3UA 2NYNA 2NYFA 4FFXA 5HW2A 1Z4KA 5F92A 4YIKA 4MUMA 2VD6A 1XL7A 4IQJM 4L57A 2FELA 1TJWA 2O7EA 1Z4PX 4L6CA 3RD8A 4ADMA 1YFMA 2JAWA 4MX2A 3CRVA 1C3CA 3TV2A 3R6VA 4MWOA 4NFLA 1KQ7A 4C6GA 2PTRA 3R6YA 4YIHA 4APAA 2JARA 1Z4LA 5D6BA 4APBA 1GKJA 1U15A 5EYVA 1XL8A 1HY0A 2FENA 4A15A 1J3UA 2QGAB 1GK2A 4NSLA 3CZOA 3F4SA
chains in the Genus database with same CATH topology
1AUWA 2O7BA 1I0AA 1FURA 2PFMA 2HVGA 4FLCA 1U16A 2J91A 1TJ7A 1HY1A 2RJSA 4C5RA 3QBPA 4ADLA 1K7WA 1W27A 3E04A 3NO9A 1XWOA 2X75A 4C5SA 4CQ5A 1DCNA 1TJVA 1YFEA 4EFCA 3BHGA 1GK3A 1FUOA 1VDKA 2FUSA 1JSWA 5F91A 4EEIA 2O7FA 1FUPA 2YIIA 2O6YA 1RE5A 4HGVA 3OCEA 3GZHA 3RRPA 1T6PA 3KDYA 1Y2MA 3KDZA 1GKMA 3R6QA 5EYTA 3GTDA 1EB4A 2O78A 4BABA 2PTSA 1K62A 3C8TA 2E9FA 1T6JA 4V2QA 4V2RA 3OCFA 2PTQA 3UNVA 2O7DA 4BAAA 1TJUA 1Q5NA 2RJRA 1DOFA 1YISA 3NZ4A 1FUQA 4C5UA 2QVEA 1B8FA 4NLEA 2OHYA 1C3UA 2NYNA 2NYFA 4FFXA 5HW2A 5F92A 2VD6A 1TJWA 2O7EA 3RD8A 4ADMA 1YFMA 4MX2A 1C3CA 3TV2A 3R6VA 1KQ7A 4C6GA 2PTRA 3R6YA 4APAA 5D6BA 4APBA 1GKJA 1U15A 5EYVA 1HY0A 1J3UA 2QGAB 1GK2A 4NSLA 3CZOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AUW A;  2O7B A;  1I0A A;  1FUR A;  2PFM A;  2HVG A;  4FLC A;  1U16 A;  2J91 A;  1TJ7 A;  1HY1 A;  2RJS A;  4C5R A;  3QBP A;  4ADL A;  1K7W A;  1W27 A;  3E04 A;  3NO9 A;  1XWO A;  2X75 A;  4C5S A;  4CQ5 A;  1DCN A;  1TJV A;  1YFE A;  4EFC A;  3BHG A;  1GK3 A;  1FUO A;  1VDK A;  2FUS A;  1JSW A;  5F91 A;  4EEI A;  2O7F A;  1FUP A;  2YII A;  2O6Y A;  1RE5 A;  4HGV A;  3OCE A;  3GZH A;  3RRP A;  1T6P A;  3KDY A;  1Y2M A;  3KDZ A;  1GKM A;  3R6Q A;  5EYT A;  3GTD A;  1EB4 A;  2O78 A;  4BAB A;  2PTS A;  1K62 A;  3C8T A;  2E9F A;  1T6J A;  4V2Q A;  4V2R A;  3OCF A;  2PTQ A;  3UNV A;  2O7D A;  4BAA A;  1TJU A;  1Q5N A;  2RJR A;  1DOF A;  1YIS A;  3NZ4 A;  1FUQ A;  4C5U A;  2QVE A;  1B8F A;  4NLE A;  2OHY A;  1C3U A;  2NYN A;  2NYF A;  4FFX A;  5HW2 A;  5F92 A;  2VD6 A;  1TJW A;  2O7E A;  3RD8 A;  4ADM A;  1YFM A;  4MX2 A;  1C3C A;  3TV2 A;  3R6V A;  1KQ7 A;  4C6G A;  2PTR A;  3R6Y A;  4APA A;  5D6B A;  4APB A;  1GKJ A;  1U15 A;  5EYV A;  1HY0 A;  1J3U A;  2QGA B;  1GK2 A;  4NSL A;  3CZO A; 
#chains in the Genus database with same CATH topology
 1AUW A;  2O7B A;  1I0A A;  1FUR A;  2PFM A;  2HVG A;  4WNL A;  5M0I A;  4FLC A;  3U13 A;  1U16 A;  2J91 A;  1TJ7 A;  1HY1 A;  2RJS A;  4C5R A;  2VSF A;  1U0L A;  3QBP A;  4ADL A;  5H8W A;  1K7W A;  1W27 A;  3E04 A;  3NO9 A;  1XWO A;  2X75 A;  4C5S A;  2JAU A;  3F4T A;  1DCN A;  4CQ5 A;  3U19 A;  1TJV A;  1YFE A;  4EFC A;  2JAO A;  3BWV A;  3BHG A;  1Q91 A;  1GK3 A;  1FUO A;  1VDK A;  2FUS A;  1JSW A;  5F91 A;  4EEI A;  2O7F A;  1FUP A;  2YII A;  2O6Y A;  1RE5 A;  3CI0 K;  4HGV A;  3OCE A;  3GZH A;  3RRP A;  1T6P A;  3KDY A;  5M0J A;  1XLY A;  1Y2M A;  3KDZ A;  2I7D A;  1GKM A;  3R6Q A;  5EYT A;  3GTD A;  1EB4 A;  2O78 A;  4BAB A;  2YV5 A;  3CRW 1;  2PTS A;  2RCN A;  2VL7 A;  1K62 A;  1Z4M A;  3C8T A;  2E9F A;  2D28 C;  1T6J A;  4V2Q A;  3F4R A;  4V2R A;  3OCF A;  1MH9 A;  2PTQ A;  3UNV A;  2O7D A;  4BAA A;  1TJU A;  1Q5N A;  1XMC A;  1IW7 D;  1Q92 A;  2RJR A;  1DOF A;  1YIS A;  3NZ4 A;  2D27 A;  1FUQ A;  1Z4I A;  4C5U A;  1T9H A;  2QVE A;  1Z4Q A;  1B8F A;  4L6A A;  1Z4J A;  4NLE A;  4E88 A;  2OHY A;  1XMD A;  1C3U A;  2NYN A;  2NYF A;  4FFX A;  5HW2 A;  1Z4K A;  5F92 A;  4YIK A;  4MUM A;  2VD6 A;  1XL7 A;  4IQJ M;  4L57 A;  2FEL A;  1TJW A;  2O7E A;  1Z4P X;  4L6C A;  3RD8 A;  4ADM A;  1YFM A;  2JAW A;  4MX2 A;  3CRV A;  1C3C A;  3TV2 A;  3R6V A;  4MWO A;  4NFL A;  1KQ7 A;  4C6G A;  2PTR A;  3R6Y A;  4YIH A;  4APA A;  2JAR A;  1Z4L A;  5D6B A;  4APB A;  1GKJ A;  1U15 A;  5EYV A;  1XL8 A;  1HY0 A;  2FEN A;  4A15 A;  1J3U A;  2QGA B;  1GK2 A;  4NSL A;  3CZO A;  3F4S A; 
#chains in the Genus database with same CATH homology
 1AUW A;  2O7B A;  1I0A A;  1FUR A;  2PFM A;  2HVG A;  4FLC A;  1U16 A;  2J91 A;  1TJ7 A;  1HY1 A;  2RJS A;  4C5R A;  3QBP A;  4ADL A;  1K7W A;  1W27 A;  3E04 A;  3NO9 A;  1XWO A;  2X75 A;  4C5S A;  4CQ5 A;  1DCN A;  1TJV A;  1YFE A;  4EFC A;  3BHG A;  1GK3 A;  1FUO A;  1VDK A;  2FUS A;  1JSW A;  5F91 A;  4EEI A;  2O7F A;  1FUP A;  2YII A;  2O6Y A;  1RE5 A;  4HGV A;  3OCE A;  3GZH A;  3RRP A;  1T6P A;  3KDY A;  1Y2M A;  3KDZ A;  1GKM A;  3R6Q A;  5EYT A;  3GTD A;  1EB4 A;  2O78 A;  4BAB A;  2PTS A;  1K62 A;  3C8T A;  2E9F A;  1T6J A;  4V2Q A;  4V2R A;  3OCF A;  2PTQ A;  3UNV A;  2O7D A;  4BAA A;  1TJU A;  1Q5N A;  2RJR A;  1DOF A;  1YIS A;  3NZ4 A;  1FUQ A;  4C5U A;  2QVE A;  1B8F A;  4NLE A;  2OHY A;  1C3U A;  2NYN A;  2NYF A;  4FFX A;  5HW2 A;  5F92 A;  2VD6 A;  1TJW A;  2O7E A;  3RD8 A;  4ADM A;  1YFM A;  4MX2 A;  1C3C A;  3TV2 A;  3R6V A;  1KQ7 A;  4C6G A;  2PTR A;  3R6Y A;  4APA A;  5D6B A;  4APB A;  1GKJ A;  1U15 A;  5EYV A;  1HY0 A;  1J3U A;  2QGA B;  1GK2 A;  4NSL A;  3CZO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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