3BHGA

Crystal structure of adenylosuccinate lyase from legionella pneumophila
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
454
structure length
448
Chain Sequence
LTALNAISPIDGRYVNKTRALSPYFSEFALTYYRLMVEIKWFESLAANDTIPEVPALDNKARKFLSDLISNFNESEAEKIKEFEKQTNHDVKAVEYYLQDKFQENEQLKSCVAFIHFACTSEDINNLAYALMIKQAIAQVIQPTIAEIMGSITLLGKQHADVAMLSRTHGQPATPTTMGKELVNFVARLKRPQQQLAEVLIPAKFNGAVGNYNAHVAAYPEVDWRKHCANFVTSLGLSFNAYTTQIEPHDGIAEVSQIMVRINNILLDYTQDIWSYISLGYFKQKTSSTMPHKVNPIDFENAEGNLGLSNALFIHFANKLTQSRMQRDLSDSTVLRNLGVAFSYSLIAYHSVAKGNDKLQINKSALQKDLSENWEVLAEAIQTVMRRYNEPNAYEQLKELTRGQMIDAENLKKFIKTLSIPEEAKAELMKLTPETYTGLATQLVKAFS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Adenylosuccinate lyase
publication title Crystal structure of adenylosuccinate lyase from Legionella pneumophila.
rcsb
source organism Legionella pneumophila subsp. pneumophila str. philadelphia 1
molecule tags Lyase
total genus 163
structure length 448
sequence length 454
ec nomenclature ec 4.3.2.2: Adenylosuccinate lyase.
pdb deposition date 2007-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF08328 ASL_C Adenylosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 3bhgA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3bhgA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3bhgA02
3RRPA 2YIIA 2PTSA 1HY1A 5EYVA 1DOFA 1JSWA 4V2RA 4C5RA 2RJSA 1FUOA 1T6PA 4NLEA 4FFXA 1FUPA 3CZOA 4MX2A 5D6BA 1TJVA 4C5UA 2NYFA 1C3UA 1C3CA 1FUQA 1GKJA 3R6YA 1RE5A 3C8TA 1Y2MA 5HW2A 1Q5NA 4EEIA 3R6VA 1J3UA 3NZ4A 2O7DA 2QVEA 3KDZA 3UNVA 1AUWA 2PTQA 1HY0A 1T6JA 1W27A 1GK2A 4BAAA 2NYNA 4C5SA 1B8FA 5F92A 3KDYA 3R6QA 2O7FA 1GK3A 2VD6A 2O6YA 1TJWA 2PFMA 4EFCA 2QGAB 1YISA 2X75A 4APAA 1XWOA 2FUSA 1EB4A 3NO9A 1FURA 2PTRA 2O78A 3QBPA 1DCNA 1TJ7A 4C6GA 2O7EA 2RJRA 3TV2A 4BABA 5F91A 4CQ5A 3BHGA 2HVGA 1TJUA 3GZHA 3OCEA 1KQ7A 4APBA 3E04A 3OCFA 1K62A 2J91A 4ADLA 1VDKA 3GTDA 3RD8A 2E9FA 4NSLA 4ADMA 1I0AA 1YFMA 4V2QA 4HGVA 4FLCA 1U16A 5EYTA 1GKMA 1K7WA 1U15A 2OHYA 1YFEA 2O7BA
chains in the Genus database with same CATH superfamily
2FENA 3RRPA 2YIIA 1Z4KA 2PTSA 3F4RA 1HY1A 1U0LA 5EYVA 4WNLA 1DOFA 1JSWA 4V2RA 4C5RA 2RJSA 1FUOA 3CRVA 1T6PA 1XMDA 4NLEA 3U13A 4FFXA 1FUPA 3CZOA 4MX2A 2JAWA 5D6BA 1TJVA 1IW7D 4C5UA 2NYFA 1C3UA 1C3CA 1FUQA 1GKJA 3R6YA 1RE5A 3C8TA 2FELA 2JARA 1Y2MA 5H8WA 2JAUA 5HW2A 3CRW1 1Z4PX 1Q5NA 3CI0K 4L57A 4EEIA 3R6VA 1J3UA 3NZ4A 2O7DA 3BWVA 2QVEA 3KDZA 4YIHA 1AUWA 3UNVA 1Z4QA 2PTQA 1HY0A 1T6JA 2VL7A 1W27A 2VSFA 1GK2A 4BAAA 2D27A 1T9HA 4L6AA 2NYNA 4C5SA 1B8FA 1Z4MA 5F92A 3KDYA 4MWOA 3R6QA 2O7FA 1GK3A 2RCNA 1Q92A 2VD6A 2O6YA 1TJWA 2PFMA 4EFCA 1XLYA 4L6CA 1Z4IA 2QGAB 1XMCA 1YISA 2X75A 4APAA 4MUMA 1Q91A 1XWOA 2YV5A 3F4SA 2FUSA 1EB4A 3NO9A 2D28C 1XL7A 1FURA 2PTRA 2O78A 3QBPA 1DCNA 1TJ7A 4C6GA 2O7EA 2RJRA 3TV2A 1Z4LA 4BABA 5F91A 4CQ5A 3BHGA 2HVGA 1TJUA 3GZHA 3F4TA 3OCEA 1KQ7A 4APBA 3E04A 3OCFA 4IQJM 1K62A 4YIKA 2J91A 5M0JA 4ADLA 1VDKA 3GTDA 3RD8A 4A15A 1XL8A 4NFLA 5M0IA 2E9FA 4NSLA 4ADMA 1I0AA 1YFMA 1Z4JA 4V2QA 4E88A 4HGVA 4FLCA 1U16A 5EYTA 1GKMA 1MH9A 2JAOA 2I7DA 1K7WA 1U15A 3U19A 2OHYA 1YFEA 2O7BA
chains in the Genus database with same CATH topology
3RRPA 2YIIA 2PTSA 1HY1A 5EYVA 1DOFA 1JSWA 4V2RA 4C5RA 2RJSA 1FUOA 1T6PA 4NLEA 4FFXA 1FUPA 3CZOA 4MX2A 5D6BA 1TJVA 4C5UA 2NYFA 1C3UA 1C3CA 1FUQA 1GKJA 3R6YA 1RE5A 3C8TA 1Y2MA 5HW2A 1Q5NA 4EEIA 3R6VA 1J3UA 3NZ4A 2O7DA 2QVEA 3KDZA 3UNVA 1AUWA 2PTQA 1HY0A 1T6JA 1W27A 1GK2A 4BAAA 2NYNA 4C5SA 1B8FA 5F92A 3KDYA 3R6QA 2O7FA 1GK3A 2VD6A 2O6YA 1TJWA 2PFMA 4EFCA 2QGAB 1YISA 2X75A 4APAA 1XWOA 2FUSA 1EB4A 3NO9A 1FURA 2PTRA 2O78A 3QBPA 1DCNA 1TJ7A 4C6GA 2O7EA 2RJRA 3TV2A 4BABA 5F91A 4CQ5A 3BHGA 2HVGA 1TJUA 3GZHA 3OCEA 1KQ7A 4APBA 3E04A 3OCFA 1K62A 2J91A 4ADLA 1VDKA 3GTDA 3RD8A 2E9FA 4NSLA 4ADMA 1I0AA 1YFMA 4V2QA 4HGVA 4FLCA 1U16A 5EYTA 1GKMA 1K7WA 1U15A 2OHYA 1YFEA 2O7BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RRP A;  2YII A;  2PTS A;  1HY1 A;  5EYV A;  1DOF A;  1JSW A;  4V2R A;  4C5R A;  2RJS A;  1FUO A;  1T6P A;  4NLE A;  4FFX A;  1FUP A;  3CZO A;  4MX2 A;  5D6B A;  1TJV A;  4C5U A;  2NYF A;  1C3U A;  1C3C A;  1FUQ A;  1GKJ A;  3R6Y A;  1RE5 A;  3C8T A;  1Y2M A;  5HW2 A;  1Q5N A;  4EEI A;  3R6V A;  1J3U A;  3NZ4 A;  2O7D A;  2QVE A;  3KDZ A;  3UNV A;  1AUW A;  2PTQ A;  1HY0 A;  1T6J A;  1W27 A;  1GK2 A;  4BAA A;  2NYN A;  4C5S A;  1B8F A;  5F92 A;  3KDY A;  3R6Q A;  2O7F A;  1GK3 A;  2VD6 A;  2O6Y A;  1TJW A;  2PFM A;  4EFC A;  2QGA B;  1YIS A;  2X75 A;  4APA A;  1XWO A;  2FUS A;  1EB4 A;  3NO9 A;  1FUR A;  2PTR A;  2O78 A;  3QBP A;  1DCN A;  1TJ7 A;  4C6G A;  2O7E A;  2RJR A;  3TV2 A;  4BAB A;  5F91 A;  4CQ5 A;  3BHG A;  2HVG A;  1TJU A;  3GZH A;  3OCE A;  1KQ7 A;  4APB A;  3E04 A;  3OCF A;  1K62 A;  2J91 A;  4ADL A;  1VDK A;  3GTD A;  3RD8 A;  2E9F A;  4NSL A;  4ADM A;  1I0A A;  1YFM A;  4V2Q A;  4HGV A;  4FLC A;  1U16 A;  5EYT A;  1GKM A;  1K7W A;  1U15 A;  2OHY A;  1YFE A;  2O7B A; 
#chains in the Genus database with same CATH topology
 2FEN A;  3RRP A;  2YII A;  1Z4K A;  2PTS A;  3F4R A;  1HY1 A;  1U0L A;  5EYV A;  4WNL A;  1DOF A;  1JSW A;  4V2R A;  4C5R A;  2RJS A;  1FUO A;  3CRV A;  1T6P A;  1XMD A;  4NLE A;  3U13 A;  4FFX A;  1FUP A;  3CZO A;  4MX2 A;  2JAW A;  5D6B A;  1TJV A;  1IW7 D;  4C5U A;  2NYF A;  1C3U A;  1C3C A;  1FUQ A;  1GKJ A;  3R6Y A;  1RE5 A;  3C8T A;  2FEL A;  2JAR A;  1Y2M A;  5H8W A;  2JAU A;  5HW2 A;  3CRW 1;  1Z4P X;  1Q5N A;  3CI0 K;  4L57 A;  4EEI A;  3R6V A;  1J3U A;  3NZ4 A;  2O7D A;  3BWV A;  2QVE A;  3KDZ A;  4YIH A;  1AUW A;  3UNV A;  1Z4Q A;  2PTQ A;  1HY0 A;  1T6J A;  2VL7 A;  1W27 A;  2VSF A;  1GK2 A;  4BAA A;  2D27 A;  1T9H A;  4L6A A;  2NYN A;  4C5S A;  1B8F A;  1Z4M A;  5F92 A;  3KDY A;  4MWO A;  3R6Q A;  2O7F A;  1GK3 A;  2RCN A;  1Q92 A;  2VD6 A;  2O6Y A;  1TJW A;  2PFM A;  4EFC A;  1XLY A;  4L6C A;  1Z4I A;  2QGA B;  1XMC A;  1YIS A;  2X75 A;  4APA A;  4MUM A;  1Q91 A;  1XWO A;  2YV5 A;  3F4S A;  2FUS A;  1EB4 A;  3NO9 A;  2D28 C;  1XL7 A;  1FUR A;  2PTR A;  2O78 A;  3QBP A;  1DCN A;  1TJ7 A;  4C6G A;  2O7E A;  2RJR A;  3TV2 A;  1Z4L A;  4BAB A;  5F91 A;  4CQ5 A;  3BHG A;  2HVG A;  1TJU A;  3GZH A;  3F4T A;  3OCE A;  1KQ7 A;  4APB A;  3E04 A;  3OCF A;  4IQJ M;  1K62 A;  4YIK A;  2J91 A;  5M0J A;  4ADL A;  1VDK A;  3GTD A;  3RD8 A;  4A15 A;  1XL8 A;  4NFL A;  5M0I A;  2E9F A;  4NSL A;  4ADM A;  1I0A A;  1YFM A;  1Z4J A;  4V2Q A;  4E88 A;  4HGV A;  4FLC A;  1U16 A;  5EYT A;  1GKM A;  1MH9 A;  2JAO A;  2I7D A;  1K7W A;  1U15 A;  3U19 A;  2OHY A;  1YFE A;  2O7B A; 
#chains in the Genus database with same CATH homology
 3RRP A;  2YII A;  2PTS A;  1HY1 A;  5EYV A;  1DOF A;  1JSW A;  4V2R A;  4C5R A;  2RJS A;  1FUO A;  1T6P A;  4NLE A;  4FFX A;  1FUP A;  3CZO A;  4MX2 A;  5D6B A;  1TJV A;  4C5U A;  2NYF A;  1C3U A;  1C3C A;  1FUQ A;  1GKJ A;  3R6Y A;  1RE5 A;  3C8T A;  1Y2M A;  5HW2 A;  1Q5N A;  4EEI A;  3R6V A;  1J3U A;  3NZ4 A;  2O7D A;  2QVE A;  3KDZ A;  3UNV A;  1AUW A;  2PTQ A;  1HY0 A;  1T6J A;  1W27 A;  1GK2 A;  4BAA A;  2NYN A;  4C5S A;  1B8F A;  5F92 A;  3KDY A;  3R6Q A;  2O7F A;  1GK3 A;  2VD6 A;  2O6Y A;  1TJW A;  2PFM A;  4EFC A;  2QGA B;  1YIS A;  2X75 A;  4APA A;  1XWO A;  2FUS A;  1EB4 A;  3NO9 A;  1FUR A;  2PTR A;  2O78 A;  3QBP A;  1DCN A;  1TJ7 A;  4C6G A;  2O7E A;  2RJR A;  3TV2 A;  4BAB A;  5F91 A;  4CQ5 A;  3BHG A;  2HVG A;  1TJU A;  3GZH A;  3OCE A;  1KQ7 A;  4APB A;  3E04 A;  3OCF A;  1K62 A;  2J91 A;  4ADL A;  1VDK A;  3GTD A;  3RD8 A;  2E9F A;  4NSL A;  4ADM A;  1I0A A;  1YFM A;  4V2Q A;  4HGV A;  4FLC A;  1U16 A;  5EYT A;  1GKM A;  1K7W A;  1U15 A;  2OHY A;  1YFE A;  2O7B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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