1J3UA

Crystal structure of aspartase from bacillus sp. ym55-1
Total Genus 164
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
164
sequence length
462
structure length
462
Chain Sequence
VRIEKDFLGEKEIPKDAYYGVQTIRATENFPITGYRIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNADPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHVGYETAAKLAREAYLTGESIRELCIKYGVLTEEQLNEILNPYEMIHPGIAG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords aspartase
publication title Crystal Structure of Thermostable Aspartase from Bacillus sp. YM55-1: Structure-based Exploration of Functional Sites in the Aspartase Family
pubmed doi rcsb
source organism Bacillus sp. ym55-1
total genus 164
structure length 462
sequence length 462
chains with identical sequence B
ec nomenclature ec 4.3.1.1: Aspartate ammonia-lyase.
pdb deposition date 2003-02-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10415 FumaraseC_C Fumarase C C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1j3uA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1j3uA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1j3uA02
4ADMA 1AUWA 1C3UA 1GKJA 1TJ7A 3R6VA 1GK2A 1GKMA 5D6BA 3GTDA 2J91A 2OHYA 4ADLA 2QGAB 2FUSA 1HY0A 1T6PA 4NLEA 1FUOA 3R6YA 2E9FA 1U16A 5EYTA 1TJWA 1Q5NA 2X75A 1DOFA 1TJUA 2NYFA 4FFXA 1U15A 4BAAA 3OCEA 4FLCA 4V2RA 4NSLA 4C5RA 1DCNA 1GK3A 3UNVA 2HVGA 1YFMA 1VDKA 2PTSA 1B8FA 1Y2MA 1KQ7A 1I0AA 1J3UA 4CQ5A 3CZOA 4MX2A 1K62A 3KDYA 1FUPA 1HY1A 3R6QA 4BABA 4APAA 2O6YA 5HW2A 3NZ4A 3QBPA 1TJVA 2NYNA 4EFCA 4V2QA 2O7EA 1K7WA 1YFEA 1FUQA 5F91A 2QVEA 1RE5A 3BHGA 2O78A 3E04A 4C5SA 4C5UA 1C3CA 5F92A 2PTRA 1YISA 1T6JA 1FURA 2O7FA 2RJSA 3NO9A 4C6GA 1XWOA 1JSWA 2VD6A 2RJRA 2O7DA 4EEIA 3OCFA 3RRPA 2PTQA 3GZHA 1W27A 4APBA 2O7BA 2PFMA 4HGVA 2YIIA 3KDZA 3C8TA 5EYVA 3TV2A 3RD8A 1EB4A
chains in the Genus database with same CATH superfamily
4ADMA 1AUWA 1IW7D 1C3UA 1GKJA 1XL8A 1Z4MA 1TJ7A 1XMCA 3R6VA 1MH9A 4IQJM 2RCNA 1GK2A 5H8WA 2JAWA 4MWOA 1GKMA 5D6BA 3GTDA 2J91A 4MUMA 2OHYA 4ADLA 2QGAB 1XL7A 2FUSA 1Z4LA 4E88A 2JARA 1HY0A 1T6PA 4NLEA 3CRW1 1FUOA 3R6YA 2E9FA 1U16A 4L6CA 5EYTA 1TJWA 4A15A 1Q5NA 4WNLA 2X75A 1DOFA 1TJUA 2FENA 1U0LA 2NYFA 1Z4JA 4FFXA 2VSFA 1U15A 4BAAA 4L6AA 3OCEA 4FLCA 4V2RA 4NSLA 4C5RA 1DCNA 2JAOA 1GK3A 3UNVA 2HVGA 5M0IA 3F4RA 2FELA 1YFMA 3F4SA 1VDKA 1XLYA 2PTSA 1Z4QA 1B8FA 1Y2MA 3U19A 2D28C 1KQ7A 1I0AA 1J3UA 4CQ5A 3CZOA 4MX2A 1Z4PX 4NFLA 1K62A 3KDYA 1FUPA 1HY1A 2YV5A 3R6QA 4BABA 4APAA 1Q91A 2O6YA 5HW2A 3CRVA 2VL7A 3NZ4A 3QBPA 1TJVA 3U13A 4EFCA 2NYNA 2O7EA 4V2QA 1K7WA 1YFEA 1FUQA 5F91A 2QVEA 1RE5A 3BHGA 2O78A 3E04A 3CI0K 4C5SA 5M0JA 4C5UA 2D27A 1C3CA 5F92A 2PTRA 1YISA 1T6JA 1FURA 2O7FA 2RJSA 3NO9A 4C6GA 2JAUA 1XWOA 1Z4IA 4YIHA 1JSWA 1T9HA 4L57A 2VD6A 2RJRA 2I7DA 4EEIA 2O7DA 3OCFA 3RRPA 2PTQA 3F4TA 4YIKA 1Z4KA 3GZHA 4APBA 1W27A 2PFMA 4HGVA 2O7BA 2YIIA 3KDZA 3C8TA 1XMDA 5EYVA 3TV2A 3RD8A 1EB4A 1Q92A 3BWVA
chains in the Genus database with same CATH topology
4ADMA 1AUWA 1C3UA 1GKJA 1TJ7A 3R6VA 1GK2A 1GKMA 5D6BA 3GTDA 2J91A 2OHYA 4ADLA 2QGAB 2FUSA 1HY0A 1T6PA 4NLEA 1FUOA 3R6YA 2E9FA 1U16A 5EYTA 1TJWA 1Q5NA 2X75A 1DOFA 1TJUA 2NYFA 4FFXA 1U15A 4BAAA 3OCEA 4FLCA 4V2RA 4NSLA 4C5RA 1DCNA 1GK3A 3UNVA 2HVGA 1YFMA 1VDKA 2PTSA 1B8FA 1Y2MA 1KQ7A 1I0AA 1J3UA 4CQ5A 3CZOA 4MX2A 1K62A 3KDYA 1FUPA 1HY1A 3R6QA 4BABA 4APAA 2O6YA 5HW2A 3NZ4A 3QBPA 1TJVA 2NYNA 4EFCA 4V2QA 2O7EA 1K7WA 1YFEA 1FUQA 5F91A 2QVEA 1RE5A 3BHGA 2O78A 3E04A 4C5SA 4C5UA 1C3CA 5F92A 2PTRA 1YISA 1T6JA 1FURA 2O7FA 2RJSA 3NO9A 4C6GA 1XWOA 1JSWA 2VD6A 2RJRA 2O7DA 4EEIA 3OCFA 3RRPA 2PTQA 3GZHA 1W27A 4APBA 2O7BA 2PFMA 4HGVA 2YIIA 3KDZA 3C8TA 5EYVA 3TV2A 3RD8A 1EB4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ADM A;  1AUW A;  1C3U A;  1GKJ A;  1TJ7 A;  3R6V A;  1GK2 A;  1GKM A;  5D6B A;  3GTD A;  2J91 A;  2OHY A;  4ADL A;  2QGA B;  2FUS A;  1HY0 A;  1T6P A;  4NLE A;  1FUO A;  3R6Y A;  2E9F A;  1U16 A;  5EYT A;  1TJW A;  1Q5N A;  2X75 A;  1DOF A;  1TJU A;  2NYF A;  4FFX A;  1U15 A;  4BAA A;  3OCE A;  4FLC A;  4V2R A;  4NSL A;  4C5R A;  1DCN A;  1GK3 A;  3UNV A;  2HVG A;  1YFM A;  1VDK A;  2PTS A;  1B8F A;  1Y2M A;  1KQ7 A;  1I0A A;  1J3U A;  4CQ5 A;  3CZO A;  4MX2 A;  1K62 A;  3KDY A;  1FUP A;  1HY1 A;  3R6Q A;  4BAB A;  4APA A;  2O6Y A;  5HW2 A;  3NZ4 A;  3QBP A;  1TJV A;  2NYN A;  4EFC A;  4V2Q A;  2O7E A;  1K7W A;  1YFE A;  1FUQ A;  5F91 A;  2QVE A;  1RE5 A;  3BHG A;  2O78 A;  3E04 A;  4C5S A;  4C5U A;  1C3C A;  5F92 A;  2PTR A;  1YIS A;  1T6J A;  1FUR A;  2O7F A;  2RJS A;  3NO9 A;  4C6G A;  1XWO A;  1JSW A;  2VD6 A;  2RJR A;  2O7D A;  4EEI A;  3OCF A;  3RRP A;  2PTQ A;  3GZH A;  1W27 A;  4APB A;  2O7B A;  2PFM A;  4HGV A;  2YII A;  3KDZ A;  3C8T A;  5EYV A;  3TV2 A;  3RD8 A;  1EB4 A; 
#chains in the Genus database with same CATH topology
 4ADM A;  1AUW A;  1IW7 D;  1C3U A;  1GKJ A;  1XL8 A;  1Z4M A;  1TJ7 A;  1XMC A;  3R6V A;  1MH9 A;  4IQJ M;  2RCN A;  1GK2 A;  5H8W A;  2JAW A;  4MWO A;  1GKM A;  5D6B A;  3GTD A;  2J91 A;  4MUM A;  2OHY A;  4ADL A;  2QGA B;  1XL7 A;  2FUS A;  1Z4L A;  4E88 A;  2JAR A;  1HY0 A;  1T6P A;  4NLE A;  3CRW 1;  1FUO A;  3R6Y A;  2E9F A;  1U16 A;  4L6C A;  5EYT A;  1TJW A;  4A15 A;  1Q5N A;  4WNL A;  2X75 A;  1DOF A;  1TJU A;  2FEN A;  1U0L A;  2NYF A;  1Z4J A;  4FFX A;  2VSF A;  1U15 A;  4BAA A;  4L6A A;  3OCE A;  4FLC A;  4V2R A;  4NSL A;  4C5R A;  1DCN A;  2JAO A;  1GK3 A;  3UNV A;  2HVG A;  5M0I A;  3F4R A;  2FEL A;  1YFM A;  3F4S A;  1VDK A;  1XLY A;  2PTS A;  1Z4Q A;  1B8F A;  1Y2M A;  3U19 A;  2D28 C;  1KQ7 A;  1I0A A;  1J3U A;  4CQ5 A;  3CZO A;  4MX2 A;  1Z4P X;  4NFL A;  1K62 A;  3KDY A;  1FUP A;  1HY1 A;  2YV5 A;  3R6Q A;  4BAB A;  4APA A;  1Q91 A;  2O6Y A;  5HW2 A;  3CRV A;  2VL7 A;  3NZ4 A;  3QBP A;  1TJV A;  3U13 A;  4EFC A;  2NYN A;  2O7E A;  4V2Q A;  1K7W A;  1YFE A;  1FUQ A;  5F91 A;  2QVE A;  1RE5 A;  3BHG A;  2O78 A;  3E04 A;  3CI0 K;  4C5S A;  5M0J A;  4C5U A;  2D27 A;  1C3C A;  5F92 A;  2PTR A;  1YIS A;  1T6J A;  1FUR A;  2O7F A;  2RJS A;  3NO9 A;  4C6G A;  2JAU A;  1XWO A;  1Z4I A;  4YIH A;  1JSW A;  1T9H A;  4L57 A;  2VD6 A;  2RJR A;  2I7D A;  4EEI A;  2O7D A;  3OCF A;  3RRP A;  2PTQ A;  3F4T A;  4YIK A;  1Z4K A;  3GZH A;  4APB A;  1W27 A;  2PFM A;  4HGV A;  2O7B A;  2YII A;  3KDZ A;  3C8T A;  1XMD A;  5EYV A;  3TV2 A;  3RD8 A;  1EB4 A;  1Q92 A;  3BWV A; 
#chains in the Genus database with same CATH homology
 4ADM A;  1AUW A;  1C3U A;  1GKJ A;  1TJ7 A;  3R6V A;  1GK2 A;  1GKM A;  5D6B A;  3GTD A;  2J91 A;  2OHY A;  4ADL A;  2QGA B;  2FUS A;  1HY0 A;  1T6P A;  4NLE A;  1FUO A;  3R6Y A;  2E9F A;  1U16 A;  5EYT A;  1TJW A;  1Q5N A;  2X75 A;  1DOF A;  1TJU A;  2NYF A;  4FFX A;  1U15 A;  4BAA A;  3OCE A;  4FLC A;  4V2R A;  4NSL A;  4C5R A;  1DCN A;  1GK3 A;  3UNV A;  2HVG A;  1YFM A;  1VDK A;  2PTS A;  1B8F A;  1Y2M A;  1KQ7 A;  1I0A A;  1J3U A;  4CQ5 A;  3CZO A;  4MX2 A;  1K62 A;  3KDY A;  1FUP A;  1HY1 A;  3R6Q A;  4BAB A;  4APA A;  2O6Y A;  5HW2 A;  3NZ4 A;  3QBP A;  1TJV A;  2NYN A;  4EFC A;  4V2Q A;  2O7E A;  1K7W A;  1YFE A;  1FUQ A;  5F91 A;  2QVE A;  1RE5 A;  3BHG A;  2O78 A;  3E04 A;  4C5S A;  4C5U A;  1C3C A;  5F92 A;  2PTR A;  1YIS A;  1T6J A;  1FUR A;  2O7F A;  2RJS A;  3NO9 A;  4C6G A;  1XWO A;  1JSW A;  2VD6 A;  2RJR A;  2O7D A;  4EEI A;  3OCF A;  3RRP A;  2PTQ A;  3GZH A;  1W27 A;  4APB A;  2O7B A;  2PFM A;  4HGV A;  2YII A;  3KDZ A;  3C8T A;  5EYV A;  3TV2 A;  3RD8 A;  1EB4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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