1J3UA

Crystal structure of aspartase from bacillus sp. ym55-1
Total Genus 164
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
164
sequence length
462
structure length
462
Chain Sequence
VRIEKDFLGEKEIPKDAYYGVQTIRATENFPITGYRIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNADPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHVGYETAAKLAREAYLTGESIRELCIKYGVLTEEQLNEILNPYEMIHPGIAG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Thermostable Aspartase from Bacillus sp. YM55-1: Structure-based Exploration of Functional Sites in the Aspartase Family
pubmed doi rcsb
source organism Bacillus sp. ym55-1
molecule tags Lyase
molecule keywords aspartase
total genus 164
structure length 462
sequence length 462
chains with identical sequence B
ec nomenclature ec 4.3.1.1: Aspartate ammonia-lyase.
pdb deposition date 2003-02-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10415 FumaraseC_C Fumarase C C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1j3uA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1j3uA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1j3uA02
1I0AA 2VD6A 4EFCA 5EYTA 4HGVA 4NSLA 3R6YA 2NYFA 4C5RA 4CQ5A 3GTDA 5F92A 2PTQA 4BAAA 3RRPA 4APBA 1YFMA 2PTRA 5EYVA 1HY1A 4V2QA 4NLEA 1TJUA 1AUWA 2E9FA 4APAA 1FUQA 4BABA 4FLCA 3C8TA 4MX2A 4FFXA 3R6VA 1YISA 2PFMA 3BHGA 1GKJA 2X75A 1K7WA 1Q5NA 2RJSA 3OCFA 3TV2A 2PTSA 1Y2MA 2O7FA 5D6BA 1W27A 1T6PA 4C6GA 1EB4A 1XWOA 3NO9A 1C3UA 3R6QA 1DCNA 4ADLA 4ADMA 3CZOA 1JSWA 2FUSA 3UNVA 2RJRA 1U15A 2NYNA 2QGAB 3OCEA 5HW2A 3NZ4A 1FURA 3QBPA 2HVGA 1T6JA 1GK3A 1VDKA 2J91A 1YFEA 1DOFA 1J3UA 2QVEA 2O6YA 1GK2A 2O7EA 1U16A 3KDZA 1HY0A 4C5UA 1FUPA 3E04A 2OHYA 3KDYA 3GZHA 2O78A 2O7DA 5F91A 4EEIA 1RE5A 3RD8A 1KQ7A 2YIIA 4V2RA 4C5SA 1TJ7A 1GKMA 1K62A 1TJVA 1FUOA 1TJWA 2O7BA 1B8FA 1C3CA
chains in the Genus database with same CATH superfamily
2RCNA 1I0AA 2VD6A 4EFCA 5EYTA 4HGVA 4NSLA 3R6YA 2NYFA 4C5RA 4L6CA 4CQ5A 1Z4PX 3GTDA 4YIKA 1Z4MA 5F92A 2PTQA 4BAAA 1MH9A 3CI0K 3RRPA 1Z4IA 4APBA 1YFMA 2D27A 4IQJM 2PTRA 4L6AA 5EYVA 1HY1A 4V2QA 4NLEA 1TJUA 1AUWA 2E9FA 4APAA 1FUQA 4BABA 4FLCA 4L57A 3C8TA 4MUMA 4MX2A 3R6VA 1YISA 4FFXA 2PFMA 3BHGA 1GKJA 1IW7D 2X75A 1K7WA 1Q5NA 2RJSA 3OCFA 3TV2A 2PTSA 1Y2MA 2O7FA 1XMCA 5D6BA 1W27A 1Q91A 1T6PA 3U13A 4C6GA 5M0JA 1EB4A 3F4RA 1XWOA 2FELA 2O7BA 3NO9A 1T9HA 1C3UA 3R6QA 1Z4KA 4WNLA 1DCNA 1Z4QA 4ADLA 4ADMA 4E88A 3CZOA 1JSWA 2FUSA 1Z4JA 2D28C 3UNVA 2RJRA 1U15A 2NYNA 2QGAB 3OCEA 5HW2A 3NZ4A 2JARA 1FURA 1Q92A 3QBPA 1XL7A 2HVGA 1T6JA 1GK3A 1VDKA 2J91A 1YFEA 1DOFA 1J3UA 2QVEA 3BWVA 2O6YA 1GK2A 3F4TA 4MWOA 2O7EA 4A15A 1U16A 2JAWA 2YV5A 1U0LA 3KDZA 2VSFA 5M0IA 1HY0A 4C5UA 1XLYA 1FUPA 1Z4LA 3E04A 2OHYA 3KDYA 3GZHA 2O78A 1XL8A 3F4SA 3CRVA 2O7DA 5F91A 4EEIA 1RE5A 2FENA 3RD8A 5H8WA 1KQ7A 4NFLA 2YIIA 4V2RA 4C5SA 1TJ7A 1GKMA 2JAUA 1K62A 4YIHA 3U19A 1XMDA 2VL7A 1TJVA 2JAOA 1FUOA 3CRW1 1TJWA 2I7DA 1B8FA 1C3CA
chains in the Genus database with same CATH topology
1I0AA 2VD6A 4EFCA 5EYTA 4HGVA 4NSLA 3R6YA 2NYFA 4C5RA 4CQ5A 3GTDA 5F92A 2PTQA 4BAAA 3RRPA 4APBA 1YFMA 2PTRA 5EYVA 1HY1A 4V2QA 4NLEA 1TJUA 1AUWA 2E9FA 4APAA 1FUQA 4BABA 4FLCA 3C8TA 4MX2A 4FFXA 3R6VA 1YISA 2PFMA 3BHGA 1GKJA 2X75A 1K7WA 1Q5NA 2RJSA 3OCFA 3TV2A 2PTSA 1Y2MA 2O7FA 5D6BA 1W27A 1T6PA 4C6GA 1EB4A 1XWOA 3NO9A 1C3UA 3R6QA 1DCNA 4ADLA 4ADMA 3CZOA 1JSWA 2FUSA 3UNVA 2RJRA 1U15A 2NYNA 2QGAB 3OCEA 5HW2A 3NZ4A 1FURA 3QBPA 2HVGA 1T6JA 1GK3A 1VDKA 2J91A 1YFEA 1DOFA 1J3UA 2QVEA 2O6YA 1GK2A 2O7EA 1U16A 3KDZA 1HY0A 4C5UA 1FUPA 3E04A 2OHYA 3KDYA 3GZHA 2O78A 2O7DA 5F91A 4EEIA 1RE5A 3RD8A 1KQ7A 2YIIA 4V2RA 4C5SA 1TJ7A 1GKMA 1K62A 1TJVA 1FUOA 1TJWA 2O7BA 1B8FA 1C3CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1I0A A;  2VD6 A;  4EFC A;  5EYT A;  4HGV A;  4NSL A;  3R6Y A;  2NYF A;  4C5R A;  4CQ5 A;  3GTD A;  5F92 A;  2PTQ A;  4BAA A;  3RRP A;  4APB A;  1YFM A;  2PTR A;  5EYV A;  1HY1 A;  4V2Q A;  4NLE A;  1TJU A;  1AUW A;  2E9F A;  4APA A;  1FUQ A;  4BAB A;  4FLC A;  3C8T A;  4MX2 A;  4FFX A;  3R6V A;  1YIS A;  2PFM A;  3BHG A;  1GKJ A;  2X75 A;  1K7W A;  1Q5N A;  2RJS A;  3OCF A;  3TV2 A;  2PTS A;  1Y2M A;  2O7F A;  5D6B A;  1W27 A;  1T6P A;  4C6G A;  1EB4 A;  1XWO A;  3NO9 A;  1C3U A;  3R6Q A;  1DCN A;  4ADL A;  4ADM A;  3CZO A;  1JSW A;  2FUS A;  3UNV A;  2RJR A;  1U15 A;  2NYN A;  2QGA B;  3OCE A;  5HW2 A;  3NZ4 A;  1FUR A;  3QBP A;  2HVG A;  1T6J A;  1GK3 A;  1VDK A;  2J91 A;  1YFE A;  1DOF A;  1J3U A;  2QVE A;  2O6Y A;  1GK2 A;  2O7E A;  1U16 A;  3KDZ A;  1HY0 A;  4C5U A;  1FUP A;  3E04 A;  2OHY A;  3KDY A;  3GZH A;  2O78 A;  2O7D A;  5F91 A;  4EEI A;  1RE5 A;  3RD8 A;  1KQ7 A;  2YII A;  4V2R A;  4C5S A;  1TJ7 A;  1GKM A;  1K62 A;  1TJV A;  1FUO A;  1TJW A;  2O7B A;  1B8F A;  1C3C A; 
#chains in the Genus database with same CATH topology
 2RCN A;  1I0A A;  2VD6 A;  4EFC A;  5EYT A;  4HGV A;  4NSL A;  3R6Y A;  2NYF A;  4C5R A;  4L6C A;  4CQ5 A;  1Z4P X;  3GTD A;  4YIK A;  1Z4M A;  5F92 A;  2PTQ A;  4BAA A;  1MH9 A;  3CI0 K;  3RRP A;  1Z4I A;  4APB A;  1YFM A;  2D27 A;  4IQJ M;  2PTR A;  4L6A A;  5EYV A;  1HY1 A;  4V2Q A;  4NLE A;  1TJU A;  1AUW A;  2E9F A;  4APA A;  1FUQ A;  4BAB A;  4FLC A;  4L57 A;  3C8T A;  4MUM A;  4MX2 A;  3R6V A;  1YIS A;  4FFX A;  2PFM A;  3BHG A;  1GKJ A;  1IW7 D;  2X75 A;  1K7W A;  1Q5N A;  2RJS A;  3OCF A;  3TV2 A;  2PTS A;  1Y2M A;  2O7F A;  1XMC A;  5D6B A;  1W27 A;  1Q91 A;  1T6P A;  3U13 A;  4C6G A;  5M0J A;  1EB4 A;  3F4R A;  1XWO A;  2FEL A;  2O7B A;  3NO9 A;  1T9H A;  1C3U A;  3R6Q A;  1Z4K A;  4WNL A;  1DCN A;  1Z4Q A;  4ADL A;  4ADM A;  4E88 A;  3CZO A;  1JSW A;  2FUS A;  1Z4J A;  2D28 C;  3UNV A;  2RJR A;  1U15 A;  2NYN A;  2QGA B;  3OCE A;  5HW2 A;  3NZ4 A;  2JAR A;  1FUR A;  1Q92 A;  3QBP A;  1XL7 A;  2HVG A;  1T6J A;  1GK3 A;  1VDK A;  2J91 A;  1YFE A;  1DOF A;  1J3U A;  2QVE A;  3BWV A;  2O6Y A;  1GK2 A;  3F4T A;  4MWO A;  2O7E A;  4A15 A;  1U16 A;  2JAW A;  2YV5 A;  1U0L A;  3KDZ A;  2VSF A;  5M0I A;  1HY0 A;  4C5U A;  1XLY A;  1FUP A;  1Z4L A;  3E04 A;  2OHY A;  3KDY A;  3GZH A;  2O78 A;  1XL8 A;  3F4S A;  3CRV A;  2O7D A;  5F91 A;  4EEI A;  1RE5 A;  2FEN A;  3RD8 A;  5H8W A;  1KQ7 A;  4NFL A;  2YII A;  4V2R A;  4C5S A;  1TJ7 A;  1GKM A;  2JAU A;  1K62 A;  4YIH A;  3U19 A;  1XMD A;  2VL7 A;  1TJV A;  2JAO A;  1FUO A;  3CRW 1;  1TJW A;  2I7D A;  1B8F A;  1C3C A; 
#chains in the Genus database with same CATH homology
 1I0A A;  2VD6 A;  4EFC A;  5EYT A;  4HGV A;  4NSL A;  3R6Y A;  2NYF A;  4C5R A;  4CQ5 A;  3GTD A;  5F92 A;  2PTQ A;  4BAA A;  3RRP A;  4APB A;  1YFM A;  2PTR A;  5EYV A;  1HY1 A;  4V2Q A;  4NLE A;  1TJU A;  1AUW A;  2E9F A;  4APA A;  1FUQ A;  4BAB A;  4FLC A;  3C8T A;  4MX2 A;  4FFX A;  3R6V A;  1YIS A;  2PFM A;  3BHG A;  1GKJ A;  2X75 A;  1K7W A;  1Q5N A;  2RJS A;  3OCF A;  3TV2 A;  2PTS A;  1Y2M A;  2O7F A;  5D6B A;  1W27 A;  1T6P A;  4C6G A;  1EB4 A;  1XWO A;  3NO9 A;  1C3U A;  3R6Q A;  1DCN A;  4ADL A;  4ADM A;  3CZO A;  1JSW A;  2FUS A;  3UNV A;  2RJR A;  1U15 A;  2NYN A;  2QGA B;  3OCE A;  5HW2 A;  3NZ4 A;  1FUR A;  3QBP A;  2HVG A;  1T6J A;  1GK3 A;  1VDK A;  2J91 A;  1YFE A;  1DOF A;  1J3U A;  2QVE A;  2O6Y A;  1GK2 A;  2O7E A;  1U16 A;  3KDZ A;  1HY0 A;  4C5U A;  1FUP A;  3E04 A;  2OHY A;  3KDY A;  3GZH A;  2O78 A;  2O7D A;  5F91 A;  4EEI A;  1RE5 A;  3RD8 A;  1KQ7 A;  2YII A;  4V2R A;  4C5S A;  1TJ7 A;  1GKM A;  1K62 A;  1TJV A;  1FUO A;  1TJW A;  2O7B A;  1B8F A;  1C3C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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