3TV2A

Structure of a class ii fumarate hydratase from burkholderia pseudomallei
Total Genus 178
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
178
sequence length
457
structure length
457
Chain Sequence
RMERDTFGEIAVPAARLWGAQTQRSLQNFKISTEKQSPELIHALALIKRAAAAVNLELGVLAQDKANAIVAAADEIIAGRHADEFPLAVWQTGSGTQTNMNLNEVIANRASELLGGERGESRAVHPNDDVNRGQSSNDVFPTAMHIAAARAIVDHLLPALRTLRATLDAKAAAFADIVKIGRTHLQDATPLTLGQEFSGYVAQLDQGIRHVEAALPHLYELAQGGTAVGTGLNAHPKFAAGVAAEIGRLTGLPFVSAPNKFEVMAAADALVFAHGALKTVAASLMKIANDIRWLASGPRCGLGELSIPENEPGSSIMPGKVNPTQSEAVTMLCCQVFGNDVAVNFGGASGNFELNVFRPMIAHNVLQSVRLLADGAQGFNDHCAVGIEPNRARIDALLNESLMLVTALNPHIGYDKAAQIAKKAHKEGTTLKAAALALGYVTDAQFDEWVRPEHMVG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Lyase
source organism Burkholderia pseudomallei
publication title Structure of a class II fumarate hydratase from Burkholderia pseudomallei
rcsb
molecule keywords Fumarate hydratase, class II
total genus 178
structure length 457
sequence length 457
ec nomenclature ec 4.2.1.2: Fumarate hydratase.
pdb deposition date 2011-09-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10415 FumaraseC_C Fumarase C C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 3tv2A03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3tv2A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3tv2A02
3NO9A 3RD8A 1RE5A 1KQ7A 3OCEA 1FUQA 1GKJA 4C6GA 1HY0A 1J3UA 2E9FA 4NLEA 3GZHA 3R6YA 1C3CA 2O7BA 1FUOA 4HGVA 4FFXA 4MX2A 2O6YA 2QGAB 3QBPA 5EYTA 3KDZA 3C8TA 3UNVA 4BABA 5F91A 3GTDA 2PTRA 3OCFA 2YIIA 2RJSA 2PFMA 2PTQA 3BHGA 2O78A 2J91A 2VD6A 2OHYA 1JSWA 1TJWA 1YFEA 1C3UA 3KDYA 1XWOA 3NZ4A 4EFCA 1Y2MA 1GK3A 4ADLA 1GKMA 4ADMA 1YFMA 2NYNA 1TJ7A 1FURA 1FUPA 5HW2A 1T6JA 4APAA 1HY1A 1U16A 4APBA 5D6BA 1YISA 1TJUA 2O7EA 4V2RA 4C5RA 4CQ5A 4BAAA 1GK2A 4C5UA 2O7FA 5EYVA 1AUWA 4EEIA 1B8FA 3R6QA 3CZOA 3TV2A 1DCNA 1W27A 4NSLA 1I0AA 1EB4A 5F92A 1DOFA 3E04A 2O7DA 1TJVA 4C5SA 1T6PA 2RJRA 3RRPA 1VDKA 1K7WA 1Q5NA 1U15A 2FUSA 2HVGA 2X75A 2QVEA 2PTSA 2NYFA 3R6VA 1K62A 4V2QA 4FLCA
chains in the Genus database with same CATH superfamily
3NO9A 2FELA 3F4SA 1XLYA 3RD8A 1RE5A 1KQ7A 2D28C 1FUQA 3OCEA 3CRW1 5M0JA 1GKJA 4C6GA 1HY0A 3F4TA 1J3UA 3F4RA 2E9FA 4NLEA 2JAWA 1Z4IA 3GZHA 4YIHA 3R6YA 1C3CA 2O7BA 1FUOA 2RCNA 4HGVA 2D27A 1XL7A 1XMCA 4FFXA 4MX2A 2O6YA 2QGAB 3QBPA 5EYTA 1Q91A 3KDZA 3C8TA 3UNVA 4L6CA 2VL7A 4BABA 5F91A 3GTDA 1U0LA 1MH9A 2PTRA 3OCFA 2I7DA 2YIIA 2RJSA 4WNLA 2PFMA 2PTQA 3BHGA 2O78A 2J91A 1T9HA 2VD6A 2OHYA 1JSWA 1TJWA 1YFEA 1Q92A 5H8WA 1C3UA 3KDYA 3U19A 1XWOA 3NZ4A 4EFCA 1Y2MA 1GK3A 1Z4QA 1Z4PX 4ADLA 4ADMA 1GKMA 1YFMA 4L57A 2NYNA 1TJ7A 1FURA 1FUPA 1Z4JA 5HW2A 4APAA 1T6JA 1HY1A 1U16A 4APBA 5D6BA 1YISA 1TJUA 2O7EA 4V2RA 4C5RA 4CQ5A 4BAAA 2YV5A 1GK2A 4C5UA 2O7FA 5EYVA 4YIKA 1AUWA 4NFLA 2JARA 4EEIA 3CRVA 4IQJM 1Z4LA 1B8FA 3R6QA 3CZOA 4MWOA 3TV2A 3U13A 1DCNA 1W27A 5M0IA 3BWVA 1I0AA 4NSLA 1EB4A 4E88A 5F92A 1DOFA 3E04A 2O7DA 1TJVA 4C5SA 1T6PA 2RJRA 2JAUA 4MUMA 2VSFA 1Z4MA 3RRPA 1VDKA 1K7WA 1IW7D 1Q5NA 2FENA 1U15A 2FUSA 2HVGA 4L6AA 2JAOA 2X75A 1XL8A 2QVEA 3CI0K 1XMDA 2PTSA 2NYFA 3R6VA 4A15A 1K62A 1Z4KA 4V2QA 4FLCA
chains in the Genus database with same CATH topology
3NO9A 3RD8A 1RE5A 1KQ7A 3OCEA 1FUQA 1GKJA 4C6GA 1HY0A 1J3UA 2E9FA 4NLEA 3GZHA 3R6YA 1C3CA 2O7BA 1FUOA 4HGVA 4FFXA 4MX2A 2O6YA 2QGAB 3QBPA 5EYTA 3KDZA 3C8TA 3UNVA 4BABA 5F91A 3GTDA 2PTRA 3OCFA 2YIIA 2RJSA 2PFMA 2PTQA 3BHGA 2O78A 2J91A 2VD6A 2OHYA 1JSWA 1TJWA 1YFEA 1C3UA 3KDYA 1XWOA 3NZ4A 4EFCA 1Y2MA 1GK3A 4ADLA 1GKMA 4ADMA 1YFMA 2NYNA 1TJ7A 1FURA 1FUPA 5HW2A 1T6JA 4APAA 1HY1A 1U16A 4APBA 5D6BA 1YISA 1TJUA 2O7EA 4V2RA 4C5RA 4CQ5A 4BAAA 1GK2A 4C5UA 2O7FA 5EYVA 1AUWA 4EEIA 1B8FA 3R6QA 3CZOA 3TV2A 1DCNA 1W27A 4NSLA 1I0AA 1EB4A 5F92A 1DOFA 3E04A 2O7DA 1TJVA 4C5SA 1T6PA 2RJRA 3RRPA 1VDKA 1K7WA 1Q5NA 1U15A 2FUSA 2HVGA 2X75A 2QVEA 2PTSA 2NYFA 3R6VA 1K62A 4V2QA 4FLCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NO9 A;  3RD8 A;  1RE5 A;  1KQ7 A;  3OCE A;  1FUQ A;  1GKJ A;  4C6G A;  1HY0 A;  1J3U A;  2E9F A;  4NLE A;  3GZH A;  3R6Y A;  1C3C A;  2O7B A;  1FUO A;  4HGV A;  4FFX A;  4MX2 A;  2O6Y A;  2QGA B;  3QBP A;  5EYT A;  3KDZ A;  3C8T A;  3UNV A;  4BAB A;  5F91 A;  3GTD A;  2PTR A;  3OCF A;  2YII A;  2RJS A;  2PFM A;  2PTQ A;  3BHG A;  2O78 A;  2J91 A;  2VD6 A;  2OHY A;  1JSW A;  1TJW A;  1YFE A;  1C3U A;  3KDY A;  1XWO A;  3NZ4 A;  4EFC A;  1Y2M A;  1GK3 A;  4ADL A;  1GKM A;  4ADM A;  1YFM A;  2NYN A;  1TJ7 A;  1FUR A;  1FUP A;  5HW2 A;  1T6J A;  4APA A;  1HY1 A;  1U16 A;  4APB A;  5D6B A;  1YIS A;  1TJU A;  2O7E A;  4V2R A;  4C5R A;  4CQ5 A;  4BAA A;  1GK2 A;  4C5U A;  2O7F A;  5EYV A;  1AUW A;  4EEI A;  1B8F A;  3R6Q A;  3CZO A;  3TV2 A;  1DCN A;  1W27 A;  4NSL A;  1I0A A;  1EB4 A;  5F92 A;  1DOF A;  3E04 A;  2O7D A;  1TJV A;  4C5S A;  1T6P A;  2RJR A;  3RRP A;  1VDK A;  1K7W A;  1Q5N A;  1U15 A;  2FUS A;  2HVG A;  2X75 A;  2QVE A;  2PTS A;  2NYF A;  3R6V A;  1K62 A;  4V2Q A;  4FLC A; 
#chains in the Genus database with same CATH topology
 3NO9 A;  2FEL A;  3F4S A;  1XLY A;  3RD8 A;  1RE5 A;  1KQ7 A;  2D28 C;  1FUQ A;  3OCE A;  3CRW 1;  5M0J A;  1GKJ A;  4C6G A;  1HY0 A;  3F4T A;  1J3U A;  3F4R A;  2E9F A;  4NLE A;  2JAW A;  1Z4I A;  3GZH A;  4YIH A;  3R6Y A;  1C3C A;  2O7B A;  1FUO A;  2RCN A;  4HGV A;  2D27 A;  1XL7 A;  1XMC A;  4FFX A;  4MX2 A;  2O6Y A;  2QGA B;  3QBP A;  5EYT A;  1Q91 A;  3KDZ A;  3C8T A;  3UNV A;  4L6C A;  2VL7 A;  4BAB A;  5F91 A;  3GTD A;  1U0L A;  1MH9 A;  2PTR A;  3OCF A;  2I7D A;  2YII A;  2RJS A;  4WNL A;  2PFM A;  2PTQ A;  3BHG A;  2O78 A;  2J91 A;  1T9H A;  2VD6 A;  2OHY A;  1JSW A;  1TJW A;  1YFE A;  1Q92 A;  5H8W A;  1C3U A;  3KDY A;  3U19 A;  1XWO A;  3NZ4 A;  4EFC A;  1Y2M A;  1GK3 A;  1Z4Q A;  1Z4P X;  4ADL A;  4ADM A;  1GKM A;  1YFM A;  4L57 A;  2NYN A;  1TJ7 A;  1FUR A;  1FUP A;  1Z4J A;  5HW2 A;  4APA A;  1T6J A;  1HY1 A;  1U16 A;  4APB A;  5D6B A;  1YIS A;  1TJU A;  2O7E A;  4V2R A;  4C5R A;  4CQ5 A;  4BAA A;  2YV5 A;  1GK2 A;  4C5U A;  2O7F A;  5EYV A;  4YIK A;  1AUW A;  4NFL A;  2JAR A;  4EEI A;  3CRV A;  4IQJ M;  1Z4L A;  1B8F A;  3R6Q A;  3CZO A;  4MWO A;  3TV2 A;  3U13 A;  1DCN A;  1W27 A;  5M0I A;  3BWV A;  1I0A A;  4NSL A;  1EB4 A;  4E88 A;  5F92 A;  1DOF A;  3E04 A;  2O7D A;  1TJV A;  4C5S A;  1T6P A;  2RJR A;  2JAU A;  4MUM A;  2VSF A;  1Z4M A;  3RRP A;  1VDK A;  1K7W A;  1IW7 D;  1Q5N A;  2FEN A;  1U15 A;  2FUS A;  2HVG A;  4L6A A;  2JAO A;  2X75 A;  1XL8 A;  2QVE A;  3CI0 K;  1XMD A;  2PTS A;  2NYF A;  3R6V A;  4A15 A;  1K62 A;  1Z4K A;  4V2Q A;  4FLC A; 
#chains in the Genus database with same CATH homology
 3NO9 A;  3RD8 A;  1RE5 A;  1KQ7 A;  3OCE A;  1FUQ A;  1GKJ A;  4C6G A;  1HY0 A;  1J3U A;  2E9F A;  4NLE A;  3GZH A;  3R6Y A;  1C3C A;  2O7B A;  1FUO A;  4HGV A;  4FFX A;  4MX2 A;  2O6Y A;  2QGA B;  3QBP A;  5EYT A;  3KDZ A;  3C8T A;  3UNV A;  4BAB A;  5F91 A;  3GTD A;  2PTR A;  3OCF A;  2YII A;  2RJS A;  2PFM A;  2PTQ A;  3BHG A;  2O78 A;  2J91 A;  2VD6 A;  2OHY A;  1JSW A;  1TJW A;  1YFE A;  1C3U A;  3KDY A;  1XWO A;  3NZ4 A;  4EFC A;  1Y2M A;  1GK3 A;  4ADL A;  1GKM A;  4ADM A;  1YFM A;  2NYN A;  1TJ7 A;  1FUR A;  1FUP A;  5HW2 A;  1T6J A;  4APA A;  1HY1 A;  1U16 A;  4APB A;  5D6B A;  1YIS A;  1TJU A;  2O7E A;  4V2R A;  4C5R A;  4CQ5 A;  4BAA A;  1GK2 A;  4C5U A;  2O7F A;  5EYV A;  1AUW A;  4EEI A;  1B8F A;  3R6Q A;  3CZO A;  3TV2 A;  1DCN A;  1W27 A;  4NSL A;  1I0A A;  1EB4 A;  5F92 A;  1DOF A;  3E04 A;  2O7D A;  1TJV A;  4C5S A;  1T6P A;  2RJR A;  3RRP A;  1VDK A;  1K7W A;  1Q5N A;  1U15 A;  2FUS A;  2HVG A;  2X75 A;  2QVE A;  2PTS A;  2NYF A;  3R6V A;  1K62 A;  4V2Q A;  4FLC A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...