4HGVA

Crystal structure of a fumarate hydratase
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
461
structure length
456
Chain Sequence
STRTETDTFGPIEVASDRYWGAQAQRSLGNFKIGWEKQPLAIVRALGIVKQAAARANMALGRLDPAIGDAIVKAAQEVIDGKLDEHFPLVVWQTGSGTQSNMNANEVVSNRAIELLGGVMGSKKPVHPNDHVNMSQSSNDTYPTAMHIACAERVIHDLLPALKHLHKALEEKVKAFDHIIKIGRTHTQDATPLTLGQEFSGYAAQVASSIKRIEMTLPGLCELAQGGTAVGTGLNAPVGFAEKVAEEIAAITGIGFTSAPNKFEALAAHDSMVFSHGAINATAAALFKIANDIRFLGSGPRSGLGELSLPENEPGSKVNPTQCEALTQVCVQVFGNHAALTFAGSQGHFELNVYNPLMAYNFLQSVQLLADAAISFTDNCVVGIEAREDNIKAALDRSLMLVTALAPKIGYDNAAKIAKTAHKNGTTLREEAVGGGYVTDEEFDAVVRPETMIGPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
source organism Sinorhizobium meliloti
publication title Crystal structure of a fumarate hydratase
rcsb
molecule keywords Fumarate hydratase class II
total genus 158
structure length 456
sequence length 461
chains with identical sequence B, C, D
ec nomenclature ec 4.2.1.2: Fumarate hydratase.
pdb deposition date 2012-10-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10415 FumaraseC_C Fumarase C C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 4hgvA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 4hgvA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 4hgvA02
4C5SA 2O6YA 2O78A 2PTSA 4NSLA 2QVEA 1TJ7A 2VD6A 3R6YA 1HY1A 4CQ5A 5EYVA 1W27A 1Q5NA 4EEIA 1RE5A 3QBPA 4FLCA 1YFMA 4APAA 3KDYA 1GKMA 3OCEA 2J91A 4EFCA 5F92A 5F91A 1GK2A 4V2RA 2HVGA 4APBA 1Y2MA 4MX2A 2E9FA 1B8FA 1T6PA 1K62A 1DOFA 4NLEA 1XWOA 3TV2A 4C6GA 2FUSA 4C5UA 2O7EA 2PTRA 1T6JA 3UNVA 3C8TA 1HY0A 1TJVA 4BAAA 3CZOA 2PTQA 3GTDA 1I0AA 3E04A 2O7FA 3R6QA 4C5RA 4BABA 1AUWA 1JSWA 3RRPA 1FUQA 2NYFA 4ADMA 2QGAB 1YFEA 1GKJA 5EYTA 2O7BA 1U16A 3RD8A 4ADLA 1TJUA 5D6BA 2YIIA 3KDZA 1DCNA 1U15A 3GZHA 1VDKA 3OCFA 3R6VA 1YISA 1C3CA 2RJRA 2RJSA 2NYNA 1C3UA 5HW2A 1KQ7A 1TJWA 1GK3A 2OHYA 1FUOA 3NZ4A 2X75A 3BHGA 2O7DA 1FUPA 4HGVA 4FFXA 3NO9A 1FURA 1J3UA 4V2QA 2PFMA 1EB4A 1K7WA
chains in the Genus database with same CATH superfamily
4C5SA 5M0JA 2O6YA 2O78A 2PTSA 4NSLA 1Z4MA 4L6AA 2QVEA 1TJ7A 2VD6A 3U13A 1HY1A 3R6YA 2JAOA 3U19A 4CQ5A 5EYVA 1W27A 1Q5NA 3CRW1 1XL8A 4EEIA 1RE5A 3QBPA 4FLCA 1YFMA 4APAA 3KDYA 1GKMA 3OCEA 2J91A 4EFCA 5M0IA 5F92A 5F91A 1GK2A 2FENA 2JAUA 2HVGA 4V2RA 4APBA 4A15A 3BWVA 1Y2MA 4MX2A 2E9FA 2VL7A 1B8FA 1T6PA 2RCNA 1K62A 1DOFA 1T9HA 1XL7A 4NLEA 2FELA 1XWOA 3TV2A 4C6GA 2FUSA 4C5UA 2O7EA 2PTRA 1T6JA 3UNVA 3C8TA 1HY0A 1TJVA 4BAAA 3CZOA 2PTQA 3GTDA 1I0AA 3E04A 4NFLA 2O7FA 1Z4PX 3F4SA 3R6QA 4L57A 1Q91A 4C5RA 4BABA 4MWOA 1Q92A 1U0LA 1AUWA 1JSWA 1Z4QA 3F4RA 3RRPA 2D27A 1Z4JA 2JARA 1FUQA 2NYFA 1XLYA 4ADMA 1Z4IA 2QGAB 2YV5A 4IQJM 1YFEA 1GKJA 5EYTA 1Z4KA 2O7BA 5H8WA 1U16A 3RD8A 1IW7D 4ADLA 1TJUA 5D6BA 4MUMA 2YIIA 3KDZA 1DCNA 1U15A 3GZHA 1VDKA 3F4TA 3OCFA 3R6VA 4YIKA 1YISA 1C3CA 1XMCA 2RJRA 2RJSA 2NYNA 1C3UA 1MH9A 5HW2A 1KQ7A 3CI0K 1TJWA 1GK3A 2D28C 2OHYA 1XMDA 1FUOA 4L6CA 3NZ4A 2X75A 3BHGA 2O7DA 2VSFA 1Z4LA 1FUPA 4HGVA 3CRVA 4FFXA 3NO9A 1FURA 1J3UA 4WNLA 4YIHA 2JAWA 2I7DA 4V2QA 4E88A 2PFMA 1EB4A 1K7WA
chains in the Genus database with same CATH topology
4C5SA 2O6YA 2O78A 2PTSA 4NSLA 2QVEA 1TJ7A 2VD6A 3R6YA 1HY1A 4CQ5A 5EYVA 1W27A 1Q5NA 4EEIA 1RE5A 3QBPA 4FLCA 1YFMA 4APAA 3KDYA 1GKMA 3OCEA 2J91A 4EFCA 5F92A 5F91A 1GK2A 4V2RA 2HVGA 4APBA 1Y2MA 4MX2A 2E9FA 1B8FA 1T6PA 1K62A 1DOFA 4NLEA 1XWOA 3TV2A 4C6GA 2FUSA 4C5UA 2O7EA 2PTRA 1T6JA 3UNVA 3C8TA 1HY0A 1TJVA 4BAAA 3CZOA 2PTQA 3GTDA 1I0AA 3E04A 2O7FA 3R6QA 4C5RA 4BABA 1AUWA 1JSWA 3RRPA 1FUQA 2NYFA 4ADMA 2QGAB 1YFEA 1GKJA 5EYTA 2O7BA 1U16A 3RD8A 4ADLA 1TJUA 5D6BA 2YIIA 3KDZA 1DCNA 1U15A 3GZHA 1VDKA 3OCFA 3R6VA 1YISA 1C3CA 2RJRA 2RJSA 2NYNA 1C3UA 5HW2A 1KQ7A 1TJWA 1GK3A 2OHYA 1FUOA 3NZ4A 2X75A 3BHGA 2O7DA 1FUPA 4HGVA 4FFXA 3NO9A 1FURA 1J3UA 4V2QA 2PFMA 1EB4A 1K7WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4C5S A;  2O6Y A;  2O78 A;  2PTS A;  4NSL A;  2QVE A;  1TJ7 A;  2VD6 A;  3R6Y A;  1HY1 A;  4CQ5 A;  5EYV A;  1W27 A;  1Q5N A;  4EEI A;  1RE5 A;  3QBP A;  4FLC A;  1YFM A;  4APA A;  3KDY A;  1GKM A;  3OCE A;  2J91 A;  4EFC A;  5F92 A;  5F91 A;  1GK2 A;  4V2R A;  2HVG A;  4APB A;  1Y2M A;  4MX2 A;  2E9F A;  1B8F A;  1T6P A;  1K62 A;  1DOF A;  4NLE A;  1XWO A;  3TV2 A;  4C6G A;  2FUS A;  4C5U A;  2O7E A;  2PTR A;  1T6J A;  3UNV A;  3C8T A;  1HY0 A;  1TJV A;  4BAA A;  3CZO A;  2PTQ A;  3GTD A;  1I0A A;  3E04 A;  2O7F A;  3R6Q A;  4C5R A;  4BAB A;  1AUW A;  1JSW A;  3RRP A;  1FUQ A;  2NYF A;  4ADM A;  2QGA B;  1YFE A;  1GKJ A;  5EYT A;  2O7B A;  1U16 A;  3RD8 A;  4ADL A;  1TJU A;  5D6B A;  2YII A;  3KDZ A;  1DCN A;  1U15 A;  3GZH A;  1VDK A;  3OCF A;  3R6V A;  1YIS A;  1C3C A;  2RJR A;  2RJS A;  2NYN A;  1C3U A;  5HW2 A;  1KQ7 A;  1TJW A;  1GK3 A;  2OHY A;  1FUO A;  3NZ4 A;  2X75 A;  3BHG A;  2O7D A;  1FUP A;  4HGV A;  4FFX A;  3NO9 A;  1FUR A;  1J3U A;  4V2Q A;  2PFM A;  1EB4 A;  1K7W A; 
#chains in the Genus database with same CATH topology
 4C5S A;  5M0J A;  2O6Y A;  2O78 A;  2PTS A;  4NSL A;  1Z4M A;  4L6A A;  2QVE A;  1TJ7 A;  2VD6 A;  3U13 A;  1HY1 A;  3R6Y A;  2JAO A;  3U19 A;  4CQ5 A;  5EYV A;  1W27 A;  1Q5N A;  3CRW 1;  1XL8 A;  4EEI A;  1RE5 A;  3QBP A;  4FLC A;  1YFM A;  4APA A;  3KDY A;  1GKM A;  3OCE A;  2J91 A;  4EFC A;  5M0I A;  5F92 A;  5F91 A;  1GK2 A;  2FEN A;  2JAU A;  2HVG A;  4V2R A;  4APB A;  4A15 A;  3BWV A;  1Y2M A;  4MX2 A;  2E9F A;  2VL7 A;  1B8F A;  1T6P A;  2RCN A;  1K62 A;  1DOF A;  1T9H A;  1XL7 A;  4NLE A;  2FEL A;  1XWO A;  3TV2 A;  4C6G A;  2FUS A;  4C5U A;  2O7E A;  2PTR A;  1T6J A;  3UNV A;  3C8T A;  1HY0 A;  1TJV A;  4BAA A;  3CZO A;  2PTQ A;  3GTD A;  1I0A A;  3E04 A;  4NFL A;  2O7F A;  1Z4P X;  3F4S A;  3R6Q A;  4L57 A;  1Q91 A;  4C5R A;  4BAB A;  4MWO A;  1Q92 A;  1U0L A;  1AUW A;  1JSW A;  1Z4Q A;  3F4R A;  3RRP A;  2D27 A;  1Z4J A;  2JAR A;  1FUQ A;  2NYF A;  1XLY A;  4ADM A;  1Z4I A;  2QGA B;  2YV5 A;  4IQJ M;  1YFE A;  1GKJ A;  5EYT A;  1Z4K A;  2O7B A;  5H8W A;  1U16 A;  3RD8 A;  1IW7 D;  4ADL A;  1TJU A;  5D6B A;  4MUM A;  2YII A;  3KDZ A;  1DCN A;  1U15 A;  3GZH A;  1VDK A;  3F4T A;  3OCF A;  3R6V A;  4YIK A;  1YIS A;  1C3C A;  1XMC A;  2RJR A;  2RJS A;  2NYN A;  1C3U A;  1MH9 A;  5HW2 A;  1KQ7 A;  3CI0 K;  1TJW A;  1GK3 A;  2D28 C;  2OHY A;  1XMD A;  1FUO A;  4L6C A;  3NZ4 A;  2X75 A;  3BHG A;  2O7D A;  2VSF A;  1Z4L A;  1FUP A;  4HGV A;  3CRV A;  4FFX A;  3NO9 A;  1FUR A;  1J3U A;  4WNL A;  4YIH A;  2JAW A;  2I7D A;  4V2Q A;  4E88 A;  2PFM A;  1EB4 A;  1K7W A; 
#chains in the Genus database with same CATH homology
 4C5S A;  2O6Y A;  2O78 A;  2PTS A;  4NSL A;  2QVE A;  1TJ7 A;  2VD6 A;  3R6Y A;  1HY1 A;  4CQ5 A;  5EYV A;  1W27 A;  1Q5N A;  4EEI A;  1RE5 A;  3QBP A;  4FLC A;  1YFM A;  4APA A;  3KDY A;  1GKM A;  3OCE A;  2J91 A;  4EFC A;  5F92 A;  5F91 A;  1GK2 A;  4V2R A;  2HVG A;  4APB A;  1Y2M A;  4MX2 A;  2E9F A;  1B8F A;  1T6P A;  1K62 A;  1DOF A;  4NLE A;  1XWO A;  3TV2 A;  4C6G A;  2FUS A;  4C5U A;  2O7E A;  2PTR A;  1T6J A;  3UNV A;  3C8T A;  1HY0 A;  1TJV A;  4BAA A;  3CZO A;  2PTQ A;  3GTD A;  1I0A A;  3E04 A;  2O7F A;  3R6Q A;  4C5R A;  4BAB A;  1AUW A;  1JSW A;  3RRP A;  1FUQ A;  2NYF A;  4ADM A;  2QGA B;  1YFE A;  1GKJ A;  5EYT A;  2O7B A;  1U16 A;  3RD8 A;  4ADL A;  1TJU A;  5D6B A;  2YII A;  3KDZ A;  1DCN A;  1U15 A;  3GZH A;  1VDK A;  3OCF A;  3R6V A;  1YIS A;  1C3C A;  2RJR A;  2RJS A;  2NYN A;  1C3U A;  5HW2 A;  1KQ7 A;  1TJW A;  1GK3 A;  2OHY A;  1FUO A;  3NZ4 A;  2X75 A;  3BHG A;  2O7D A;  1FUP A;  4HGV A;  4FFX A;  3NO9 A;  1FUR A;  1J3U A;  4V2Q A;  2PFM A;  1EB4 A;  1K7W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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