1K62A

Crystal structure of the human argininosuccinate lyase q286r mutant
Total Genus 173
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
173
sequence length
450
structure length
450
Chain Sequence
GAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLLTKAEMDQILHGLDKVAEEWAQGTFKLNSNDEDIHTANERRLKELIGATAGKLHTGRSRNDQVVTDLRLWMRQTCSTLSGLLWELIRTMVDRAEAERDVLFPGYTHLQRAQPIRWSHWILSHAVALTRDSERLLEVRKRINVLPLGSGAIAGNPLGVDRELLRAELNFGAITLNSMDATSERDFVAEFLFWRSLCMTHLSRMAEDLILYCTKEFSFVQLSDAYSTGSSLMPRKKNPDSLELIRSKAGRVFGRCAGLLMTLKGLPSTYNKDLQEDKEAVFEVSDTMSAVLQVATGVISTLQIHQENMGQALSPDMLATDLAYYLVRKGMPFRQAHEASGKAVFMAETKGVALNQLSLQELQTISPLFSGDVICVWDYRHSVEQYGALGGTARSSVDWQIRQVRALLQAQQA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Argininosuccinate Lyase
publication title Three-dimensional structure of the argininosuccinate lyase frequently complementing allele Q286R.
pubmed doi rcsb
source organism Homo sapiens
total genus 173
structure length 450
sequence length 450
chains with identical sequence B
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 2001-10-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1k62A03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1k62A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1k62A02
1TJVA 2O6YA 3R6VA 3KDZA 4MX2A 2O7BA 1U16A 1AUWA 1K7WA 3QBPA 2O78A 2PTQA 3CZOA 4FFXA 2O7DA 1EB4A 1YFMA 1Q5NA 2YIIA 1TJWA 3R6YA 2PTRA 4EFCA 4C5UA 4HGVA 1FURA 1JSWA 5D6BA 4NSLA 1XWOA 2J91A 5F92A 2NYFA 2NYNA 4EEIA 2RJSA 1VDKA 4BABA 4APAA 3GZHA 1RE5A 3NO9A 1W27A 3NZ4A 1HY1A 1U15A 1TJUA 5F91A 3C8TA 1YISA 1Y2MA 3RRPA 5EYTA 4C5SA 1DOFA 2E9FA 3RD8A 3KDYA 4FLCA 1C3CA 1FUOA 4APBA 2RJRA 5EYVA 4V2RA 4C5RA 4CQ5A 3TV2A 1DCNA 2HVGA 1I0AA 1J3UA 3BHGA 2O7FA 2QGAB 1K62A 5HW2A 1HY0A 4BAAA 1YFEA 1GK3A 2QVEA 1TJ7A 4C6GA 1KQ7A 1FUQA 3R6QA 1C3UA 2X75A 4V2QA 2O7EA 3OCFA 1GKMA 1FUPA 1GKJA 4ADMA 4NLEA 2PTSA 3OCEA 3E04A 4ADLA 3UNVA 2OHYA 1T6PA 2VD6A 2FUSA 1B8FA 1GK2A 2PFMA 3GTDA 1T6JA
chains in the Genus database with same CATH superfamily
1TJVA 2O6YA 3R6VA 3KDZA 5M0IA 4MX2A 2O7BA 1U16A 1AUWA 4YIHA 1K7WA 3QBPA 2O78A 2PTQA 3CZOA 2VSFA 4FFXA 1XL8A 2O7DA 5M0JA 2YV5A 1EB4A 1YFMA 2JAOA 2FELA 1Q5NA 2YIIA 1TJWA 2VL7A 3R6YA 2PTRA 4EFCA 4C5UA 4HGVA 1FURA 1JSWA 5D6BA 4A15A 4IQJM 4NSLA 2FENA 1XWOA 1Z4LA 2J91A 5F92A 2NYFA 2NYNA 4EEIA 2RJSA 1VDKA 2D27A 4BABA 4APAA 3GZHA 1RE5A 3NO9A 1W27A 3NZ4A 1HY1A 1U15A 1XMDA 1TJUA 5F91A 2RCNA 3F4RA 3C8TA 1YISA 3BWVA 4MWOA 1Y2MA 3RRPA 5EYTA 4C5SA 1Z4KA 1DOFA 2E9FA 1Z4MA 3RD8A 3KDYA 2JARA 1Q91A 4FLCA 1C3CA 1FUOA 4APBA 2RJRA 5EYVA 4V2RA 4C5RA 4CQ5A 2D28C 3TV2A 1DCNA 5H8WA 2HVGA 1I0AA 1J3UA 3BHGA 2O7FA 3CRW1 2QGAB 1K62A 5HW2A 2JAWA 1HY0A 4BAAA 1YFEA 4YIKA 4E88A 1GK3A 2QVEA 3U13A 1TJ7A 4MUMA 4C6GA 1XMCA 3CI0K 1KQ7A 3CRVA 1FUQA 3R6QA 3U19A 1C3UA 2X75A 4V2QA 1Z4JA 2I7DA 4WNLA 2O7EA 3OCFA 1GKMA 4L57A 1Q92A 1T9HA 1FUPA 1Z4PX 1GKJA 1XL7A 1MH9A 4L6AA 4ADMA 1U0LA 1XLYA 4NLEA 2PTSA 3OCEA 1IW7D 3E04A 4ADLA 3UNVA 2OHYA 1T6PA 2VD6A 2FUSA 1B8FA 1Z4IA 1GK2A 3F4SA 1Z4QA 2JAUA 3F4TA 2PFMA 4NFLA 4L6CA 3GTDA 1T6JA
chains in the Genus database with same CATH topology
1TJVA 2O6YA 3R6VA 3KDZA 4MX2A 2O7BA 1U16A 1AUWA 1K7WA 3QBPA 2O78A 2PTQA 3CZOA 4FFXA 2O7DA 1EB4A 1YFMA 1Q5NA 2YIIA 1TJWA 3R6YA 2PTRA 4EFCA 4C5UA 4HGVA 1FURA 1JSWA 5D6BA 4NSLA 1XWOA 2J91A 5F92A 2NYFA 2NYNA 4EEIA 2RJSA 1VDKA 4BABA 4APAA 3GZHA 1RE5A 3NO9A 1W27A 3NZ4A 1HY1A 1U15A 1TJUA 5F91A 3C8TA 1YISA 1Y2MA 3RRPA 5EYTA 4C5SA 1DOFA 2E9FA 3RD8A 3KDYA 4FLCA 1C3CA 1FUOA 4APBA 2RJRA 5EYVA 4V2RA 4C5RA 4CQ5A 3TV2A 1DCNA 2HVGA 1I0AA 1J3UA 3BHGA 2O7FA 2QGAB 1K62A 5HW2A 1HY0A 4BAAA 1YFEA 1GK3A 2QVEA 1TJ7A 4C6GA 1KQ7A 1FUQA 3R6QA 1C3UA 2X75A 4V2QA 2O7EA 3OCFA 1GKMA 1FUPA 1GKJA 4ADMA 4NLEA 2PTSA 3OCEA 3E04A 4ADLA 3UNVA 2OHYA 1T6PA 2VD6A 2FUSA 1B8FA 1GK2A 2PFMA 3GTDA 1T6JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TJV A;  2O6Y A;  3R6V A;  3KDZ A;  4MX2 A;  2O7B A;  1U16 A;  1AUW A;  1K7W A;  3QBP A;  2O78 A;  2PTQ A;  3CZO A;  4FFX A;  2O7D A;  1EB4 A;  1YFM A;  1Q5N A;  2YII A;  1TJW A;  3R6Y A;  2PTR A;  4EFC A;  4C5U A;  4HGV A;  1FUR A;  1JSW A;  5D6B A;  4NSL A;  1XWO A;  2J91 A;  5F92 A;  2NYF A;  2NYN A;  4EEI A;  2RJS A;  1VDK A;  4BAB A;  4APA A;  3GZH A;  1RE5 A;  3NO9 A;  1W27 A;  3NZ4 A;  1HY1 A;  1U15 A;  1TJU A;  5F91 A;  3C8T A;  1YIS A;  1Y2M A;  3RRP A;  5EYT A;  4C5S A;  1DOF A;  2E9F A;  3RD8 A;  3KDY A;  4FLC A;  1C3C A;  1FUO A;  4APB A;  2RJR A;  5EYV A;  4V2R A;  4C5R A;  4CQ5 A;  3TV2 A;  1DCN A;  2HVG A;  1I0A A;  1J3U A;  3BHG A;  2O7F A;  2QGA B;  1K62 A;  5HW2 A;  1HY0 A;  4BAA A;  1YFE A;  1GK3 A;  2QVE A;  1TJ7 A;  4C6G A;  1KQ7 A;  1FUQ A;  3R6Q A;  1C3U A;  2X75 A;  4V2Q A;  2O7E A;  3OCF A;  1GKM A;  1FUP A;  1GKJ A;  4ADM A;  4NLE A;  2PTS A;  3OCE A;  3E04 A;  4ADL A;  3UNV A;  2OHY A;  1T6P A;  2VD6 A;  2FUS A;  1B8F A;  1GK2 A;  2PFM A;  3GTD A;  1T6J A; 
#chains in the Genus database with same CATH topology
 1TJV A;  2O6Y A;  3R6V A;  3KDZ A;  5M0I A;  4MX2 A;  2O7B A;  1U16 A;  1AUW A;  4YIH A;  1K7W A;  3QBP A;  2O78 A;  2PTQ A;  3CZO A;  2VSF A;  4FFX A;  1XL8 A;  2O7D A;  5M0J A;  2YV5 A;  1EB4 A;  1YFM A;  2JAO A;  2FEL A;  1Q5N A;  2YII A;  1TJW A;  2VL7 A;  3R6Y A;  2PTR A;  4EFC A;  4C5U A;  4HGV A;  1FUR A;  1JSW A;  5D6B A;  4A15 A;  4IQJ M;  4NSL A;  2FEN A;  1XWO A;  1Z4L A;  2J91 A;  5F92 A;  2NYF A;  2NYN A;  4EEI A;  2RJS A;  1VDK A;  2D27 A;  4BAB A;  4APA A;  3GZH A;  1RE5 A;  3NO9 A;  1W27 A;  3NZ4 A;  1HY1 A;  1U15 A;  1XMD A;  1TJU A;  5F91 A;  2RCN A;  3F4R A;  3C8T A;  1YIS A;  3BWV A;  4MWO A;  1Y2M A;  3RRP A;  5EYT A;  4C5S A;  1Z4K A;  1DOF A;  2E9F A;  1Z4M A;  3RD8 A;  3KDY A;  2JAR A;  1Q91 A;  4FLC A;  1C3C A;  1FUO A;  4APB A;  2RJR A;  5EYV A;  4V2R A;  4C5R A;  4CQ5 A;  2D28 C;  3TV2 A;  1DCN A;  5H8W A;  2HVG A;  1I0A A;  1J3U A;  3BHG A;  2O7F A;  3CRW 1;  2QGA B;  1K62 A;  5HW2 A;  2JAW A;  1HY0 A;  4BAA A;  1YFE A;  4YIK A;  4E88 A;  1GK3 A;  2QVE A;  3U13 A;  1TJ7 A;  4MUM A;  4C6G A;  1XMC A;  3CI0 K;  1KQ7 A;  3CRV A;  1FUQ A;  3R6Q A;  3U19 A;  1C3U A;  2X75 A;  4V2Q A;  1Z4J A;  2I7D A;  4WNL A;  2O7E A;  3OCF A;  1GKM A;  4L57 A;  1Q92 A;  1T9H A;  1FUP A;  1Z4P X;  1GKJ A;  1XL7 A;  1MH9 A;  4L6A A;  4ADM A;  1U0L A;  1XLY A;  4NLE A;  2PTS A;  3OCE A;  1IW7 D;  3E04 A;  4ADL A;  3UNV A;  2OHY A;  1T6P A;  2VD6 A;  2FUS A;  1B8F A;  1Z4I A;  1GK2 A;  3F4S A;  1Z4Q A;  2JAU A;  3F4T A;  2PFM A;  4NFL A;  4L6C A;  3GTD A;  1T6J A; 
#chains in the Genus database with same CATH homology
 1TJV A;  2O6Y A;  3R6V A;  3KDZ A;  4MX2 A;  2O7B A;  1U16 A;  1AUW A;  1K7W A;  3QBP A;  2O78 A;  2PTQ A;  3CZO A;  4FFX A;  2O7D A;  1EB4 A;  1YFM A;  1Q5N A;  2YII A;  1TJW A;  3R6Y A;  2PTR A;  4EFC A;  4C5U A;  4HGV A;  1FUR A;  1JSW A;  5D6B A;  4NSL A;  1XWO A;  2J91 A;  5F92 A;  2NYF A;  2NYN A;  4EEI A;  2RJS A;  1VDK A;  4BAB A;  4APA A;  3GZH A;  1RE5 A;  3NO9 A;  1W27 A;  3NZ4 A;  1HY1 A;  1U15 A;  1TJU A;  5F91 A;  3C8T A;  1YIS A;  1Y2M A;  3RRP A;  5EYT A;  4C5S A;  1DOF A;  2E9F A;  3RD8 A;  3KDY A;  4FLC A;  1C3C A;  1FUO A;  4APB A;  2RJR A;  5EYV A;  4V2R A;  4C5R A;  4CQ5 A;  3TV2 A;  1DCN A;  2HVG A;  1I0A A;  1J3U A;  3BHG A;  2O7F A;  2QGA B;  1K62 A;  5HW2 A;  1HY0 A;  4BAA A;  1YFE A;  1GK3 A;  2QVE A;  1TJ7 A;  4C6G A;  1KQ7 A;  1FUQ A;  3R6Q A;  1C3U A;  2X75 A;  4V2Q A;  2O7E A;  3OCF A;  1GKM A;  1FUP A;  1GKJ A;  4ADM A;  4NLE A;  2PTS A;  3OCE A;  3E04 A;  4ADL A;  3UNV A;  2OHY A;  1T6P A;  2VD6 A;  2FUS A;  1B8F A;  1GK2 A;  2PFM A;  3GTD A;  1T6J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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