1K62A

Crystal structure of the human argininosuccinate lyase q286r mutant
Total Genus 173
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
173
sequence length
450
structure length
450
Chain Sequence
GAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLLTKAEMDQILHGLDKVAEEWAQGTFKLNSNDEDIHTANERRLKELIGATAGKLHTGRSRNDQVVTDLRLWMRQTCSTLSGLLWELIRTMVDRAEAERDVLFPGYTHLQRAQPIRWSHWILSHAVALTRDSERLLEVRKRINVLPLGSGAIAGNPLGVDRELLRAELNFGAITLNSMDATSERDFVAEFLFWRSLCMTHLSRMAEDLILYCTKEFSFVQLSDAYSTGSSLMPRKKNPDSLELIRSKAGRVFGRCAGLLMTLKGLPSTYNKDLQEDKEAVFEVSDTMSAVLQVATGVISTLQIHQENMGQALSPDMLATDLAYYLVRKGMPFRQAHEASGKAVFMAETKGVALNQLSLQELQTISPLFSGDVICVWDYRHSVEQYGALGGTARSSVDWQIRQVRALLQAQQA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
source organism Homo sapiens
publication title Three-dimensional structure of the argininosuccinate lyase frequently complementing allele Q286R.
pubmed doi rcsb
molecule keywords Argininosuccinate Lyase
total genus 173
structure length 450
sequence length 450
chains with identical sequence B
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 2001-10-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1k62A03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1k62A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1k62A02
2QVEA 1Y2MA 1TJ7A 1GKJA 2O7FA 1XWOA 3KDZA 2O7EA 1FURA 3OCFA 1B8FA 1FUQA 3TV2A 1DOFA 4FLCA 4ADMA 4C6GA 1HY1A 2VD6A 5EYTA 3OCEA 1J3UA 4V2RA 4EFCA 5F91A 2RJSA 3C8TA 1KQ7A 1TJUA 3CZOA 2E9FA 2QGAB 2X75A 4C5UA 1RE5A 1HY0A 1GKMA 5EYVA 1W27A 1YFEA 1T6PA 1GK3A 4APBA 4BABA 1FUPA 4EEIA 2J91A 2PFMA 2PTQA 1T6JA 4C5RA 4V2QA 2O7BA 3E04A 4APAA 3NO9A 3R6VA 5F92A 1EB4A 4CQ5A 1VDKA 4NLEA 2PTRA 4MX2A 2NYFA 3KDYA 2O7DA 1JSWA 3UNVA 4HGVA 3BHGA 3QBPA 3NZ4A 2NYNA 3GZHA 3RRPA 4FFXA 5HW2A 1GK2A 1TJWA 4C5SA 1K7WA 5D6BA 3R6QA 2OHYA 1DCNA 2PTSA 2HVGA 2RJRA 1C3UA 3RD8A 3R6YA 2YIIA 1K62A 4BAAA 2O6YA 1I0AA 4ADLA 1AUWA 1YISA 1C3CA 2FUSA 1U16A 1YFMA 1TJVA 4NSLA 2O78A 3GTDA 1Q5NA 1U15A 1FUOA
chains in the Genus database with same CATH superfamily
2QVEA 1Y2MA 1TJ7A 1GKJA 2O7FA 1XWOA 3KDZA 2O7EA 1FURA 1Q92A 2VL7A 3OCFA 1Z4PX 1B8FA 2JAUA 1FUQA 4L57A 3TV2A 2FELA 1DOFA 4FLCA 3BWVA 4L6CA 4ADMA 2RCNA 4A15A 4C6GA 5M0JA 1HY1A 2VD6A 5EYTA 3F4RA 3OCEA 1J3UA 2D27A 4V2RA 3CI0K 5F91A 4EFCA 2RJSA 3C8TA 1KQ7A 1T9HA 1TJUA 3CZOA 4E88A 1Z4JA 4NFLA 3F4SA 2E9FA 1Z4IA 1XL7A 2QGAB 2X75A 4C5UA 1RE5A 2VSFA 1XMCA 1MH9A 1Z4LA 1HY0A 1GKMA 5EYVA 1W27A 1Q91A 1U0LA 1IW7D 1YFEA 1T6PA 4IQJM 1GK3A 4APBA 1XMDA 4BABA 1FUPA 4EEIA 2J91A 2PFMA 2PTQA 1T6JA 4C5RA 4V2QA 2O7BA 3E04A 4APAA 3CRW1 3NO9A 3R6VA 5F92A 4MUMA 3U13A 4MWOA 1EB4A 4CQ5A 1VDKA 1Z4MA 2D28C 4NLEA 4L6AA 1XLYA 2PTRA 4MX2A 2NYFA 3KDYA 2O7DA 1JSWA 3UNVA 4WNLA 5M0IA 4HGVA 3BHGA 4YIKA 3QBPA 3NZ4A 1Z4KA 2NYNA 3GZHA 3RRPA 4FFXA 2JARA 3CRVA 5HW2A 1GK2A 1TJWA 4C5SA 1K7WA 1Z4QA 2JAOA 5D6BA 3R6QA 2OHYA 1DCNA 2JAWA 2PTSA 2HVGA 2I7DA 2RJRA 3U19A 1C3UA 5H8WA 3RD8A 3R6YA 2YIIA 1K62A 4BAAA 2O6YA 1I0AA 4ADLA 1AUWA 1XL8A 1YISA 1C3CA 2FUSA 4YIHA 1U16A 3F4TA 1YFMA 2FENA 1TJVA 4NSLA 2O78A 2YV5A 3GTDA 1Q5NA 1U15A 1FUOA
chains in the Genus database with same CATH topology
2QVEA 1Y2MA 1TJ7A 1GKJA 2O7FA 1XWOA 3KDZA 2O7EA 1FURA 3OCFA 1B8FA 1FUQA 3TV2A 1DOFA 4FLCA 4ADMA 4C6GA 1HY1A 2VD6A 5EYTA 3OCEA 1J3UA 4V2RA 4EFCA 5F91A 2RJSA 3C8TA 1KQ7A 1TJUA 3CZOA 2E9FA 2QGAB 2X75A 4C5UA 1RE5A 1HY0A 1GKMA 5EYVA 1W27A 1YFEA 1T6PA 1GK3A 4APBA 4BABA 1FUPA 4EEIA 2J91A 2PFMA 2PTQA 1T6JA 4C5RA 4V2QA 2O7BA 3E04A 4APAA 3NO9A 3R6VA 5F92A 1EB4A 4CQ5A 1VDKA 4NLEA 2PTRA 4MX2A 2NYFA 3KDYA 2O7DA 1JSWA 3UNVA 4HGVA 3BHGA 3QBPA 3NZ4A 2NYNA 3GZHA 3RRPA 4FFXA 5HW2A 1GK2A 1TJWA 4C5SA 1K7WA 5D6BA 3R6QA 2OHYA 1DCNA 2PTSA 2HVGA 2RJRA 1C3UA 3RD8A 3R6YA 2YIIA 1K62A 4BAAA 2O6YA 1I0AA 4ADLA 1AUWA 1YISA 1C3CA 2FUSA 1U16A 1YFMA 1TJVA 4NSLA 2O78A 3GTDA 1Q5NA 1U15A 1FUOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QVE A;  1Y2M A;  1TJ7 A;  1GKJ A;  2O7F A;  1XWO A;  3KDZ A;  2O7E A;  1FUR A;  3OCF A;  1B8F A;  1FUQ A;  3TV2 A;  1DOF A;  4FLC A;  4ADM A;  4C6G A;  1HY1 A;  2VD6 A;  5EYT A;  3OCE A;  1J3U A;  4V2R A;  4EFC A;  5F91 A;  2RJS A;  3C8T A;  1KQ7 A;  1TJU A;  3CZO A;  2E9F A;  2QGA B;  2X75 A;  4C5U A;  1RE5 A;  1HY0 A;  1GKM A;  5EYV A;  1W27 A;  1YFE A;  1T6P A;  1GK3 A;  4APB A;  4BAB A;  1FUP A;  4EEI A;  2J91 A;  2PFM A;  2PTQ A;  1T6J A;  4C5R A;  4V2Q A;  2O7B A;  3E04 A;  4APA A;  3NO9 A;  3R6V A;  5F92 A;  1EB4 A;  4CQ5 A;  1VDK A;  4NLE A;  2PTR A;  4MX2 A;  2NYF A;  3KDY A;  2O7D A;  1JSW A;  3UNV A;  4HGV A;  3BHG A;  3QBP A;  3NZ4 A;  2NYN A;  3GZH A;  3RRP A;  4FFX A;  5HW2 A;  1GK2 A;  1TJW A;  4C5S A;  1K7W A;  5D6B A;  3R6Q A;  2OHY A;  1DCN A;  2PTS A;  2HVG A;  2RJR A;  1C3U A;  3RD8 A;  3R6Y A;  2YII A;  1K62 A;  4BAA A;  2O6Y A;  1I0A A;  4ADL A;  1AUW A;  1YIS A;  1C3C A;  2FUS A;  1U16 A;  1YFM A;  1TJV A;  4NSL A;  2O78 A;  3GTD A;  1Q5N A;  1U15 A;  1FUO A; 
#chains in the Genus database with same CATH topology
 2QVE A;  1Y2M A;  1TJ7 A;  1GKJ A;  2O7F A;  1XWO A;  3KDZ A;  2O7E A;  1FUR A;  1Q92 A;  2VL7 A;  3OCF A;  1Z4P X;  1B8F A;  2JAU A;  1FUQ A;  4L57 A;  3TV2 A;  2FEL A;  1DOF A;  4FLC A;  3BWV A;  4L6C A;  4ADM A;  2RCN A;  4A15 A;  4C6G A;  5M0J A;  1HY1 A;  2VD6 A;  5EYT A;  3F4R A;  3OCE A;  1J3U A;  2D27 A;  4V2R A;  3CI0 K;  5F91 A;  4EFC A;  2RJS A;  3C8T A;  1KQ7 A;  1T9H A;  1TJU A;  3CZO A;  4E88 A;  1Z4J A;  4NFL A;  3F4S A;  2E9F A;  1Z4I A;  1XL7 A;  2QGA B;  2X75 A;  4C5U A;  1RE5 A;  2VSF A;  1XMC A;  1MH9 A;  1Z4L A;  1HY0 A;  1GKM A;  5EYV A;  1W27 A;  1Q91 A;  1U0L A;  1IW7 D;  1YFE A;  1T6P A;  4IQJ M;  1GK3 A;  4APB A;  1XMD A;  4BAB A;  1FUP A;  4EEI A;  2J91 A;  2PFM A;  2PTQ A;  1T6J A;  4C5R A;  4V2Q A;  2O7B A;  3E04 A;  4APA A;  3CRW 1;  3NO9 A;  3R6V A;  5F92 A;  4MUM A;  3U13 A;  4MWO A;  1EB4 A;  4CQ5 A;  1VDK A;  1Z4M A;  2D28 C;  4NLE A;  4L6A A;  1XLY A;  2PTR A;  4MX2 A;  2NYF A;  3KDY A;  2O7D A;  1JSW A;  3UNV A;  4WNL A;  5M0I A;  4HGV A;  3BHG A;  4YIK A;  3QBP A;  3NZ4 A;  1Z4K A;  2NYN A;  3GZH A;  3RRP A;  4FFX A;  2JAR A;  3CRV A;  5HW2 A;  1GK2 A;  1TJW A;  4C5S A;  1K7W A;  1Z4Q A;  2JAO A;  5D6B A;  3R6Q A;  2OHY A;  1DCN A;  2JAW A;  2PTS A;  2HVG A;  2I7D A;  2RJR A;  3U19 A;  1C3U A;  5H8W A;  3RD8 A;  3R6Y A;  2YII A;  1K62 A;  4BAA A;  2O6Y A;  1I0A A;  4ADL A;  1AUW A;  1XL8 A;  1YIS A;  1C3C A;  2FUS A;  4YIH A;  1U16 A;  3F4T A;  1YFM A;  2FEN A;  1TJV A;  4NSL A;  2O78 A;  2YV5 A;  3GTD A;  1Q5N A;  1U15 A;  1FUO A; 
#chains in the Genus database with same CATH homology
 2QVE A;  1Y2M A;  1TJ7 A;  1GKJ A;  2O7F A;  1XWO A;  3KDZ A;  2O7E A;  1FUR A;  3OCF A;  1B8F A;  1FUQ A;  3TV2 A;  1DOF A;  4FLC A;  4ADM A;  4C6G A;  1HY1 A;  2VD6 A;  5EYT A;  3OCE A;  1J3U A;  4V2R A;  4EFC A;  5F91 A;  2RJS A;  3C8T A;  1KQ7 A;  1TJU A;  3CZO A;  2E9F A;  2QGA B;  2X75 A;  4C5U A;  1RE5 A;  1HY0 A;  1GKM A;  5EYV A;  1W27 A;  1YFE A;  1T6P A;  1GK3 A;  4APB A;  4BAB A;  1FUP A;  4EEI A;  2J91 A;  2PFM A;  2PTQ A;  1T6J A;  4C5R A;  4V2Q A;  2O7B A;  3E04 A;  4APA A;  3NO9 A;  3R6V A;  5F92 A;  1EB4 A;  4CQ5 A;  1VDK A;  4NLE A;  2PTR A;  4MX2 A;  2NYF A;  3KDY A;  2O7D A;  1JSW A;  3UNV A;  4HGV A;  3BHG A;  3QBP A;  3NZ4 A;  2NYN A;  3GZH A;  3RRP A;  4FFX A;  5HW2 A;  1GK2 A;  1TJW A;  4C5S A;  1K7W A;  5D6B A;  3R6Q A;  2OHY A;  1DCN A;  2PTS A;  2HVG A;  2RJR A;  1C3U A;  3RD8 A;  3R6Y A;  2YII A;  1K62 A;  4BAA A;  2O6Y A;  1I0A A;  4ADL A;  1AUW A;  1YIS A;  1C3C A;  2FUS A;  1U16 A;  1YFM A;  1TJV A;  4NSL A;  2O78 A;  3GTD A;  1Q5N A;  1U15 A;  1FUO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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