3OCFA

Crystal structure of fumarate lyase:delta crystallin from brucella melitensis in native form
Total Genus 171
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
171
sequence length
455
structure length
444
Chain Sequence
TRREQDSLGERDIPMDAYFGIQTLRAVENFSLSDVALNHIPALVRALAMVKKAAATANYKLRQLPEPKYAAIVAACDDIIDGLLMEQFVVDVFQGGAGTSSNMNANEVIANRALEHLGRPRGDYQTIHPNDDVNMSQSTNDVYPTAVRLALLLSQNQVQTALHRLIAAFEAKGREFATVIKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGAYAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGEIRLPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNAFEPLIVYNILSSMRLLGRAMTNLAERCVDGIEANVERCRAGAEESISLATALVPVVGYARAAEIAKQALASGQTVMEVAISKGLDASALTIMLDPLR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Fumarate lyase:Delta crystallin
publication title Crystal structure of fumarate lyase:delta crystallin from Brucella melitensis in native form
rcsb
source organism Brucella melitensis
molecule tags Lyase
total genus 171
structure length 444
sequence length 455
chains with identical sequence B, C, D
ec nomenclature ec 4.3.1.1: Aspartate ammonia-lyase.
pdb deposition date 2010-08-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 3ocfA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3ocfA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3ocfA02
3GZHA 5EYTA 3RRPA 1C3UA 1XWOA 2PTRA 2O7FA 1HY0A 4MX2A 1TJUA 4APAA 1K62A 1U16A 1HY1A 1DCNA 1GKJA 4C6GA 1GKMA 2NYNA 3R6QA 3BHGA 4V2RA 3R6VA 3E04A 1RE5A 1Y2MA 1J3UA 5EYVA 1W27A 4EEIA 4EFCA 1GK3A 2OHYA 1B8FA 4FLCA 3CZOA 3NO9A 2O7BA 4HGVA 3KDYA 2FUSA 1FUQA 1FURA 1T6PA 1TJVA 4NSLA 2QGAB 4BAAA 3UNVA 2RJRA 3R6YA 2J91A 2QVEA 1FUPA 2O6YA 4C5SA 1TJ7A 1EB4A 4APBA 2PFMA 4CQ5A 4ADLA 1KQ7A 1YFMA 2HVGA 1DOFA 1I0AA 1U15A 2E9FA 2O78A 1AUWA 4C5UA 1C3CA 4ADMA 3TV2A 2X75A 3KDZA 3RD8A 1GK2A 2PTQA 1YISA 2RJSA 3C8TA 1T6JA 2O7EA 4V2QA 5F91A 1K7WA 2PTSA 4FFXA 4BABA 4C5RA 3OCEA 3NZ4A 4NLEA 5F92A 5HW2A 1YFEA 1JSWA 5D6BA 3GTDA 2O7DA 2NYFA 2VD6A 3OCFA 1FUOA 1TJWA 2YIIA 3QBPA 1VDKA 1Q5NA
chains in the Genus database with same CATH superfamily
2JAUA 3GZHA 5EYTA 2RCNA 4L6AA 2JARA 4MWOA 3CI0K 1U0LA 3RRPA 1C3UA 1XWOA 1MH9A 2PTRA 2O7FA 1HY0A 4MX2A 1TJUA 4APAA 4L57A 1K62A 1U16A 1HY1A 1DCNA 1GKJA 4C6GA 2VSFA 1GKMA 2NYNA 3R6QA 3BHGA 4V2RA 3R6VA 3CRW1 3U19A 3E04A 1RE5A 1Y2MA 1J3UA 5EYVA 1W27A 4EEIA 4EFCA 1GK3A 2OHYA 4NFLA 1B8FA 1XLYA 4FLCA 3CZOA 3NO9A 2O7BA 4HGVA 2YV5A 3KDYA 2FUSA 1FUQA 1FURA 1TJVA 2I7DA 1T6PA 1T9HA 4NSLA 2QGAB 4BAAA 3UNVA 1Z4IA 3F4TA 4YIKA 2D28C 2RJRA 3R6YA 2J91A 2QVEA 1IW7D 5M0JA 1Z4PX 1FUPA 2O6YA 4C5SA 1TJ7A 1EB4A 1Z4MA 4MUMA 4APBA 2PFMA 1Z4QA 4CQ5A 1KQ7A 4ADLA 1YFMA 4WNLA 2HVGA 3U13A 1XL8A 1DOFA 1I0AA 1U15A 2E9FA 1XMCA 1XL7A 2O78A 1AUWA 4C5UA 1XMDA 1C3CA 4ADMA 3TV2A 2X75A 3KDZA 3BWVA 3RD8A 1GK2A 2VL7A 2PTQA 1Z4KA 1YISA 2RJSA 4YIHA 5M0IA 3C8TA 1T6JA 2O7EA 4V2QA 3CRVA 5F91A 1K7WA 2PTSA 2JAWA 4FFXA 4BABA 4A15A 4C5RA 3OCEA 2D27A 3NZ4A 1Q91A 4NLEA 5F92A 5HW2A 3F4RA 2FENA 1YFEA 5H8WA 1JSWA 5D6BA 4IQJM 3GTDA 2FELA 4L6CA 2O7DA 2JAOA 1Z4LA 2NYFA 2VD6A 3OCFA 1FUOA 1TJWA 3F4SA 2YIIA 3QBPA 1VDKA 4E88A 1Q5NA 1Q92A 1Z4JA
chains in the Genus database with same CATH topology
3GZHA 5EYTA 3RRPA 1C3UA 1XWOA 2PTRA 2O7FA 1HY0A 4MX2A 1TJUA 4APAA 1K62A 1U16A 1HY1A 1DCNA 1GKJA 4C6GA 1GKMA 2NYNA 3R6QA 3BHGA 4V2RA 3R6VA 3E04A 1RE5A 1Y2MA 1J3UA 5EYVA 1W27A 4EEIA 4EFCA 1GK3A 2OHYA 1B8FA 4FLCA 3CZOA 3NO9A 2O7BA 4HGVA 3KDYA 2FUSA 1FUQA 1FURA 1T6PA 1TJVA 4NSLA 2QGAB 4BAAA 3UNVA 2RJRA 3R6YA 2J91A 2QVEA 1FUPA 2O6YA 4C5SA 1TJ7A 1EB4A 4APBA 2PFMA 4CQ5A 4ADLA 1KQ7A 1YFMA 2HVGA 1DOFA 1I0AA 1U15A 2E9FA 2O78A 1AUWA 4C5UA 1C3CA 4ADMA 3TV2A 2X75A 3KDZA 3RD8A 1GK2A 2PTQA 1YISA 2RJSA 3C8TA 1T6JA 2O7EA 4V2QA 5F91A 1K7WA 2PTSA 4FFXA 4BABA 4C5RA 3OCEA 3NZ4A 4NLEA 5F92A 5HW2A 1YFEA 1JSWA 5D6BA 3GTDA 2O7DA 2NYFA 2VD6A 3OCFA 1FUOA 1TJWA 2YIIA 3QBPA 1VDKA 1Q5NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GZH A;  5EYT A;  3RRP A;  1C3U A;  1XWO A;  2PTR A;  2O7F A;  1HY0 A;  4MX2 A;  1TJU A;  4APA A;  1K62 A;  1U16 A;  1HY1 A;  1DCN A;  1GKJ A;  4C6G A;  1GKM A;  2NYN A;  3R6Q A;  3BHG A;  4V2R A;  3R6V A;  3E04 A;  1RE5 A;  1Y2M A;  1J3U A;  5EYV A;  1W27 A;  4EEI A;  4EFC A;  1GK3 A;  2OHY A;  1B8F A;  4FLC A;  3CZO A;  3NO9 A;  2O7B A;  4HGV A;  3KDY A;  2FUS A;  1FUQ A;  1FUR A;  1T6P A;  1TJV A;  4NSL A;  2QGA B;  4BAA A;  3UNV A;  2RJR A;  3R6Y A;  2J91 A;  2QVE A;  1FUP A;  2O6Y A;  4C5S A;  1TJ7 A;  1EB4 A;  4APB A;  2PFM A;  4CQ5 A;  4ADL A;  1KQ7 A;  1YFM A;  2HVG A;  1DOF A;  1I0A A;  1U15 A;  2E9F A;  2O78 A;  1AUW A;  4C5U A;  1C3C A;  4ADM A;  3TV2 A;  2X75 A;  3KDZ A;  3RD8 A;  1GK2 A;  2PTQ A;  1YIS A;  2RJS A;  3C8T A;  1T6J A;  2O7E A;  4V2Q A;  5F91 A;  1K7W A;  2PTS A;  4FFX A;  4BAB A;  4C5R A;  3OCE A;  3NZ4 A;  4NLE A;  5F92 A;  5HW2 A;  1YFE A;  1JSW A;  5D6B A;  3GTD A;  2O7D A;  2NYF A;  2VD6 A;  3OCF A;  1FUO A;  1TJW A;  2YII A;  3QBP A;  1VDK A;  1Q5N A; 
#chains in the Genus database with same CATH topology
 2JAU A;  3GZH A;  5EYT A;  2RCN A;  4L6A A;  2JAR A;  4MWO A;  3CI0 K;  1U0L A;  3RRP A;  1C3U A;  1XWO A;  1MH9 A;  2PTR A;  2O7F A;  1HY0 A;  4MX2 A;  1TJU A;  4APA A;  4L57 A;  1K62 A;  1U16 A;  1HY1 A;  1DCN A;  1GKJ A;  4C6G A;  2VSF A;  1GKM A;  2NYN A;  3R6Q A;  3BHG A;  4V2R A;  3R6V A;  3CRW 1;  3U19 A;  3E04 A;  1RE5 A;  1Y2M A;  1J3U A;  5EYV A;  1W27 A;  4EEI A;  4EFC A;  1GK3 A;  2OHY A;  4NFL A;  1B8F A;  1XLY A;  4FLC A;  3CZO A;  3NO9 A;  2O7B A;  4HGV A;  2YV5 A;  3KDY A;  2FUS A;  1FUQ A;  1FUR A;  1TJV A;  2I7D A;  1T6P A;  1T9H A;  4NSL A;  2QGA B;  4BAA A;  3UNV A;  1Z4I A;  3F4T A;  4YIK A;  2D28 C;  2RJR A;  3R6Y A;  2J91 A;  2QVE A;  1IW7 D;  5M0J A;  1Z4P X;  1FUP A;  2O6Y A;  4C5S A;  1TJ7 A;  1EB4 A;  1Z4M A;  4MUM A;  4APB A;  2PFM A;  1Z4Q A;  4CQ5 A;  1KQ7 A;  4ADL A;  1YFM A;  4WNL A;  2HVG A;  3U13 A;  1XL8 A;  1DOF A;  1I0A A;  1U15 A;  2E9F A;  1XMC A;  1XL7 A;  2O78 A;  1AUW A;  4C5U A;  1XMD A;  1C3C A;  4ADM A;  3TV2 A;  2X75 A;  3KDZ A;  3BWV A;  3RD8 A;  1GK2 A;  2VL7 A;  2PTQ A;  1Z4K A;  1YIS A;  2RJS A;  4YIH A;  5M0I A;  3C8T A;  1T6J A;  2O7E A;  4V2Q A;  3CRV A;  5F91 A;  1K7W A;  2PTS A;  2JAW A;  4FFX A;  4BAB A;  4A15 A;  4C5R A;  3OCE A;  2D27 A;  3NZ4 A;  1Q91 A;  4NLE A;  5F92 A;  5HW2 A;  3F4R A;  2FEN A;  1YFE A;  5H8W A;  1JSW A;  5D6B A;  4IQJ M;  3GTD A;  2FEL A;  4L6C A;  2O7D A;  2JAO A;  1Z4L A;  2NYF A;  2VD6 A;  3OCF A;  1FUO A;  1TJW A;  3F4S A;  2YII A;  3QBP A;  1VDK A;  4E88 A;  1Q5N A;  1Q92 A;  1Z4J A; 
#chains in the Genus database with same CATH homology
 3GZH A;  5EYT A;  3RRP A;  1C3U A;  1XWO A;  2PTR A;  2O7F A;  1HY0 A;  4MX2 A;  1TJU A;  4APA A;  1K62 A;  1U16 A;  1HY1 A;  1DCN A;  1GKJ A;  4C6G A;  1GKM A;  2NYN A;  3R6Q A;  3BHG A;  4V2R A;  3R6V A;  3E04 A;  1RE5 A;  1Y2M A;  1J3U A;  5EYV A;  1W27 A;  4EEI A;  4EFC A;  1GK3 A;  2OHY A;  1B8F A;  4FLC A;  3CZO A;  3NO9 A;  2O7B A;  4HGV A;  3KDY A;  2FUS A;  1FUQ A;  1FUR A;  1T6P A;  1TJV A;  4NSL A;  2QGA B;  4BAA A;  3UNV A;  2RJR A;  3R6Y A;  2J91 A;  2QVE A;  1FUP A;  2O6Y A;  4C5S A;  1TJ7 A;  1EB4 A;  4APB A;  2PFM A;  4CQ5 A;  4ADL A;  1KQ7 A;  1YFM A;  2HVG A;  1DOF A;  1I0A A;  1U15 A;  2E9F A;  2O78 A;  1AUW A;  4C5U A;  1C3C A;  4ADM A;  3TV2 A;  2X75 A;  3KDZ A;  3RD8 A;  1GK2 A;  2PTQ A;  1YIS A;  2RJS A;  3C8T A;  1T6J A;  2O7E A;  4V2Q A;  5F91 A;  1K7W A;  2PTS A;  4FFX A;  4BAB A;  4C5R A;  3OCE A;  3NZ4 A;  4NLE A;  5F92 A;  5HW2 A;  1YFE A;  1JSW A;  5D6B A;  3GTD A;  2O7D A;  2NYF A;  2VD6 A;  3OCF A;  1FUO A;  1TJW A;  2YII A;  3QBP A;  1VDK A;  1Q5N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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