3OCFA

Crystal structure of fumarate lyase:delta crystallin from brucella melitensis in native form
Total Genus 171
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
171
sequence length
455
structure length
444
Chain Sequence
TRREQDSLGERDIPMDAYFGIQTLRAVENFSLSDVALNHIPALVRALAMVKKAAATANYKLRQLPEPKYAAIVAACDDIIDGLLMEQFVVDVFQGGAGTSSNMNANEVIANRALEHLGRPRGDYQTIHPNDDVNMSQSTNDVYPTAVRLALLLSQNQVQTALHRLIAAFEAKGREFATVIKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGAYAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGEIRLPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNAFEPLIVYNILSSMRLLGRAMTNLAERCVDGIEANVERCRAGAEESISLATALVPVVGYARAAEIAKQALASGQTVMEVAISKGLDASALTIMLDPLR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of fumarate lyase:delta crystallin from Brucella melitensis in native form
rcsb
source organism Brucella melitensis
molecule tags Lyase
molecule keywords Fumarate lyase:Delta crystallin
total genus 171
structure length 444
sequence length 455
chains with identical sequence B, C, D
ec nomenclature ec 4.3.1.1: Aspartate ammonia-lyase.
pdb deposition date 2010-08-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 3ocfA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3ocfA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3ocfA02
3KDYA 1VDKA 4ADLA 2O6YA 1C3UA 3BHGA 5HW2A 1C3CA 2QVEA 1KQ7A 2J91A 1YFMA 2PTQA 4V2RA 2RJSA 2O7BA 1TJVA 1FUOA 1U16A 4BABA 1T6PA 4EEIA 2O7DA 1I0AA 4NLEA 1XWOA 3UNVA 2O78A 1K62A 1FUQA 4NSLA 1GK3A 1B8FA 3TV2A 2O7FA 1K7WA 1EB4A 2RJRA 2PTSA 4BAAA 3RD8A 4FFXA 2X75A 1DOFA 1AUWA 1GKMA 1JSWA 1RE5A 4HGVA 2NYNA 4C5RA 1T6JA 1J3UA 3QBPA 1HY0A 4V2QA 2E9FA 2OHYA 3GTDA 1GKJA 1YISA 1U15A 1FURA 4C5UA 3C8TA 3R6YA 4FLCA 2YIIA 3RRPA 4MX2A 4EFCA 3CZOA 1FUPA 5F91A 2QGAB 1W27A 1TJ7A 2HVGA 4APAA 3R6VA 1YFEA 5F92A 2PFMA 2NYFA 5EYTA 4C6GA 1GK2A 1HY1A 3GZHA 3NZ4A 2PTRA 3NO9A 3OCFA 4C5SA 1Q5NA 5EYVA 3OCEA 4CQ5A 4APBA 1TJUA 2FUSA 2VD6A 3KDZA 3E04A 1DCNA 4ADMA 2O7EA 1Y2MA 1TJWA 3R6QA 5D6BA
chains in the Genus database with same CATH superfamily
3F4SA 3KDYA 1VDKA 4ADLA 2O6YA 1C3UA 3BHGA 5HW2A 1Z4KA 1C3CA 2QVEA 1KQ7A 2J91A 1YFMA 2PTQA 4V2RA 2RJSA 2O7BA 2RCNA 5M0JA 4MWOA 1TJVA 1Z4JA 1XLYA 1FUOA 2JAOA 1U16A 3U19A 4BABA 4L6CA 1T6PA 4EEIA 2O7DA 1Q91A 2JAUA 1I0AA 4IQJM 4NLEA 1Z4QA 4NFLA 1XMDA 3CI0K 2VSFA 1XWOA 4YIKA 3UNVA 2O78A 1K62A 1FUQA 4NSLA 1GK3A 1B8FA 5H8WA 3TV2A 2O7FA 1K7WA 1Z4PX 1EB4A 2RJRA 2PTSA 1MH9A 4BAAA 2D28C 3RD8A 4FFXA 2X75A 1DOFA 5M0IA 4MUMA 1AUWA 4E88A 1GKMA 1XMCA 1JSWA 1RE5A 2YV5A 3BWVA 1U0LA 1XL8A 4HGVA 2NYNA 4C5RA 1T6JA 1XL7A 2FELA 1T9HA 1J3UA 3QBPA 1HY0A 4L57A 4V2QA 2E9FA 2OHYA 1Q92A 4YIHA 4L6AA 3U13A 3GTDA 3F4TA 1Z4MA 3F4RA 1GKJA 1YISA 1U15A 3CRW1 1FURA 4C5UA 3C8TA 3R6YA 4FLCA 2YIIA 3RRPA 4MX2A 4EFCA 3CRVA 4A15A 1Z4IA 3CZOA 1FUPA 2I7DA 5F91A 2QGAB 1W27A 1TJ7A 2HVGA 4APAA 3R6VA 1YFEA 5F92A 2PFMA 2NYFA 5EYTA 4C6GA 2JARA 1GK2A 1HY1A 3GZHA 3NZ4A 2D27A 2PTRA 3NO9A 3OCFA 4C5SA 2FENA 1Q5NA 5EYVA 3OCEA 4CQ5A 4APBA 2JAWA 1TJUA 2FUSA 2VD6A 1IW7D 3KDZA 4WNLA 3E04A 1Z4LA 1DCNA 4ADMA 2O7EA 1Y2MA 1TJWA 3R6QA 5D6BA 2VL7A
chains in the Genus database with same CATH topology
3KDYA 1VDKA 4ADLA 2O6YA 1C3UA 3BHGA 5HW2A 1C3CA 2QVEA 1KQ7A 2J91A 1YFMA 2PTQA 4V2RA 2RJSA 2O7BA 1TJVA 1FUOA 1U16A 4BABA 1T6PA 4EEIA 2O7DA 1I0AA 4NLEA 1XWOA 3UNVA 2O78A 1K62A 1FUQA 4NSLA 1GK3A 1B8FA 3TV2A 2O7FA 1K7WA 1EB4A 2RJRA 2PTSA 4BAAA 3RD8A 4FFXA 2X75A 1DOFA 1AUWA 1GKMA 1JSWA 1RE5A 4HGVA 2NYNA 4C5RA 1T6JA 1J3UA 3QBPA 1HY0A 4V2QA 2E9FA 2OHYA 3GTDA 1GKJA 1YISA 1U15A 1FURA 4C5UA 3C8TA 3R6YA 4FLCA 2YIIA 3RRPA 4MX2A 4EFCA 3CZOA 1FUPA 5F91A 2QGAB 1W27A 1TJ7A 2HVGA 4APAA 3R6VA 1YFEA 5F92A 2PFMA 2NYFA 5EYTA 4C6GA 1GK2A 1HY1A 3GZHA 3NZ4A 2PTRA 3NO9A 3OCFA 4C5SA 1Q5NA 5EYVA 3OCEA 4CQ5A 4APBA 1TJUA 2FUSA 2VD6A 3KDZA 3E04A 1DCNA 4ADMA 2O7EA 1Y2MA 1TJWA 3R6QA 5D6BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KDY A;  1VDK A;  4ADL A;  2O6Y A;  1C3U A;  3BHG A;  5HW2 A;  1C3C A;  2QVE A;  1KQ7 A;  2J91 A;  1YFM A;  2PTQ A;  4V2R A;  2RJS A;  2O7B A;  1TJV A;  1FUO A;  1U16 A;  4BAB A;  1T6P A;  4EEI A;  2O7D A;  1I0A A;  4NLE A;  1XWO A;  3UNV A;  2O78 A;  1K62 A;  1FUQ A;  4NSL A;  1GK3 A;  1B8F A;  3TV2 A;  2O7F A;  1K7W A;  1EB4 A;  2RJR A;  2PTS A;  4BAA A;  3RD8 A;  4FFX A;  2X75 A;  1DOF A;  1AUW A;  1GKM A;  1JSW A;  1RE5 A;  4HGV A;  2NYN A;  4C5R A;  1T6J A;  1J3U A;  3QBP A;  1HY0 A;  4V2Q A;  2E9F A;  2OHY A;  3GTD A;  1GKJ A;  1YIS A;  1U15 A;  1FUR A;  4C5U A;  3C8T A;  3R6Y A;  4FLC A;  2YII A;  3RRP A;  4MX2 A;  4EFC A;  3CZO A;  1FUP A;  5F91 A;  2QGA B;  1W27 A;  1TJ7 A;  2HVG A;  4APA A;  3R6V A;  1YFE A;  5F92 A;  2PFM A;  2NYF A;  5EYT A;  4C6G A;  1GK2 A;  1HY1 A;  3GZH A;  3NZ4 A;  2PTR A;  3NO9 A;  3OCF A;  4C5S A;  1Q5N A;  5EYV A;  3OCE A;  4CQ5 A;  4APB A;  1TJU A;  2FUS A;  2VD6 A;  3KDZ A;  3E04 A;  1DCN A;  4ADM A;  2O7E A;  1Y2M A;  1TJW A;  3R6Q A;  5D6B A; 
#chains in the Genus database with same CATH topology
 3F4S A;  3KDY A;  1VDK A;  4ADL A;  2O6Y A;  1C3U A;  3BHG A;  5HW2 A;  1Z4K A;  1C3C A;  2QVE A;  1KQ7 A;  2J91 A;  1YFM A;  2PTQ A;  4V2R A;  2RJS A;  2O7B A;  2RCN A;  5M0J A;  4MWO A;  1TJV A;  1Z4J A;  1XLY A;  1FUO A;  2JAO A;  1U16 A;  3U19 A;  4BAB A;  4L6C A;  1T6P A;  4EEI A;  2O7D A;  1Q91 A;  2JAU A;  1I0A A;  4IQJ M;  4NLE A;  1Z4Q A;  4NFL A;  1XMD A;  3CI0 K;  2VSF A;  1XWO A;  4YIK A;  3UNV A;  2O78 A;  1K62 A;  1FUQ A;  4NSL A;  1GK3 A;  1B8F A;  5H8W A;  3TV2 A;  2O7F A;  1K7W A;  1Z4P X;  1EB4 A;  2RJR A;  2PTS A;  1MH9 A;  4BAA A;  2D28 C;  3RD8 A;  4FFX A;  2X75 A;  1DOF A;  5M0I A;  4MUM A;  1AUW A;  4E88 A;  1GKM A;  1XMC A;  1JSW A;  1RE5 A;  2YV5 A;  3BWV A;  1U0L A;  1XL8 A;  4HGV A;  2NYN A;  4C5R A;  1T6J A;  1XL7 A;  2FEL A;  1T9H A;  1J3U A;  3QBP A;  1HY0 A;  4L57 A;  4V2Q A;  2E9F A;  2OHY A;  1Q92 A;  4YIH A;  4L6A A;  3U13 A;  3GTD A;  3F4T A;  1Z4M A;  3F4R A;  1GKJ A;  1YIS A;  1U15 A;  3CRW 1;  1FUR A;  4C5U A;  3C8T A;  3R6Y A;  4FLC A;  2YII A;  3RRP A;  4MX2 A;  4EFC A;  3CRV A;  4A15 A;  1Z4I A;  3CZO A;  1FUP A;  2I7D A;  5F91 A;  2QGA B;  1W27 A;  1TJ7 A;  2HVG A;  4APA A;  3R6V A;  1YFE A;  5F92 A;  2PFM A;  2NYF A;  5EYT A;  4C6G A;  2JAR A;  1GK2 A;  1HY1 A;  3GZH A;  3NZ4 A;  2D27 A;  2PTR A;  3NO9 A;  3OCF A;  4C5S A;  2FEN A;  1Q5N A;  5EYV A;  3OCE A;  4CQ5 A;  4APB A;  2JAW A;  1TJU A;  2FUS A;  2VD6 A;  1IW7 D;  3KDZ A;  4WNL A;  3E04 A;  1Z4L A;  1DCN A;  4ADM A;  2O7E A;  1Y2M A;  1TJW A;  3R6Q A;  5D6B A;  2VL7 A; 
#chains in the Genus database with same CATH homology
 3KDY A;  1VDK A;  4ADL A;  2O6Y A;  1C3U A;  3BHG A;  5HW2 A;  1C3C A;  2QVE A;  1KQ7 A;  2J91 A;  1YFM A;  2PTQ A;  4V2R A;  2RJS A;  2O7B A;  1TJV A;  1FUO A;  1U16 A;  4BAB A;  1T6P A;  4EEI A;  2O7D A;  1I0A A;  4NLE A;  1XWO A;  3UNV A;  2O78 A;  1K62 A;  1FUQ A;  4NSL A;  1GK3 A;  1B8F A;  3TV2 A;  2O7F A;  1K7W A;  1EB4 A;  2RJR A;  2PTS A;  4BAA A;  3RD8 A;  4FFX A;  2X75 A;  1DOF A;  1AUW A;  1GKM A;  1JSW A;  1RE5 A;  4HGV A;  2NYN A;  4C5R A;  1T6J A;  1J3U A;  3QBP A;  1HY0 A;  4V2Q A;  2E9F A;  2OHY A;  3GTD A;  1GKJ A;  1YIS A;  1U15 A;  1FUR A;  4C5U A;  3C8T A;  3R6Y A;  4FLC A;  2YII A;  3RRP A;  4MX2 A;  4EFC A;  3CZO A;  1FUP A;  5F91 A;  2QGA B;  1W27 A;  1TJ7 A;  2HVG A;  4APA A;  3R6V A;  1YFE A;  5F92 A;  2PFM A;  2NYF A;  5EYT A;  4C6G A;  1GK2 A;  1HY1 A;  3GZH A;  3NZ4 A;  2PTR A;  3NO9 A;  3OCF A;  4C5S A;  1Q5N A;  5EYV A;  3OCE A;  4CQ5 A;  4APB A;  1TJU A;  2FUS A;  2VD6 A;  3KDZ A;  3E04 A;  1DCN A;  4ADM A;  2O7E A;  1Y2M A;  1TJW A;  3R6Q A;  5D6B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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