3OCFA

Crystal structure of fumarate lyase:delta crystallin from brucella melitensis in native form
Total Genus 171
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
171
sequence length
455
structure length
444
Chain Sequence
b'TRREQDSLGERDIPMDAYFGIQTLRAVENFSLSDVALNHIPALVRALAMVKKAAATANYKLRQLPEPKYAAIVAACDDIIDGLLMEQFVVDVFQGGAGTSSNMNANEVIANRALEHLGRPRGDYQTIHPNDDVNMSQSTNDVYPTAVRLALLLSQNQVQTALHRLIAAFEAKGREFATVIKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGAYAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGEIRLPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNAFEPLIVYNILSSMRLLGRAMTNLAERCVDGIEANVERCRAGAEESISLATALVPVVGYARAAEIAKQALASGQTVMEVAISKGLDASALTIMLDPLR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Fumarate lyase:Delta crystallin
publication title Crystal structure of fumarate lyase:delta crystallin from Brucella melitensis in native form
rcsb
source organism Brucella melitensis
molecule tags Lyase
total genus 171
structure length 444
sequence length 455
chains with identical sequence B, C, D
ec nomenclature ec 4.3.1.1: Aspartate ammonia-lyase.
pdb deposition date 2010-08-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 3ocfA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3ocfA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3ocfA02
2O78A 1DCNA 3UNVA 4EFCA 1AUWA 5F91A 1YISA 2O7FA 1I0AA 4C5UA 4V2QA 4MX2A 1TJ7A 4HGVA 1XWOA 1FURA 1FUQA 1YFMA 2PTQA 2PTRA 1Y2MA 1HY1A 3GZHA 3NO9A 1B8FA 2O7EA 4C5SA 1GK3A 5F92A 3NZ4A 3OCFA 2NYFA 2PFMA 5EYTA 4BABA 4NLEA 3E04A 2QVEA 4ADLA 1YFEA 1C3CA 3R6QA 4NSLA 2HVGA 1J3UA 3KDZA 3R6VA 1TJWA 1FUPA 1U15A 4FLCA 1K62A 1JSWA 2OHYA 4APBA 1U16A 3OCEA 3CZOA 1DOFA 2VD6A 2FUSA 2PTSA 3RD8A 1EB4A 4C6GA 1VDKA 3QBPA 4C5RA 1T6PA 3KDYA 2O6YA 1GK2A 5EYVA 3C8TA 1RE5A 1TJVA 4V2RA 1GKMA 3BHGA 2YIIA 2RJRA 3TV2A 1FUOA 1K7WA 1C3UA 4FFXA 1TJUA 2X75A 3RRPA 4APAA 4ADMA 2O7BA 3GTDA 2O7DA 2J91A 2QGAB 5D6BA 4BAAA 1KQ7A 3R6YA 4CQ5A 4EEIA 1HY0A 1W27A 1T6JA 2NYNA 1Q5NA 2E9FA 1GKJA 5HW2A 2RJSA
chains in the Genus database with same CATH superfamily
2O78A 1DCNA 3CRVA 3UNVA 4MUMA 1AUWA 5F91A 2D28C 3F4TA 4EFCA 1YISA 1T9HA 2O7FA 1I0AA 4C5UA 4V2QA 4MX2A 1TJ7A 4HGVA 1XWOA 1Z4QA 1FURA 1Q92A 1Z4MA 1FUQA 1YFMA 2PTQA 1XMCA 2PTRA 1Y2MA 1HY1A 2VSFA 3GZHA 3NO9A 1B8FA 2O7EA 4C5SA 4L6AA 1GK3A 1Z4PX 5M0JA 5F92A 3NZ4A 3OCFA 1IW7D 2JAOA 2FENA 2NYFA 4YIHA 2PFMA 1XMDA 2I7DA 5EYTA 4BABA 4NLEA 2D27A 3E04A 2QVEA 1MH9A 4ADLA 1YFEA 1Z4IA 1C3CA 3CI0K 3R6QA 4L6CA 1Z4KA 4NSLA 2HVGA 1J3UA 4IQJM 3KDZA 3R6VA 1TJWA 1FUPA 1U15A 4FLCA 1K62A 1JSWA 2OHYA 4APBA 1U16A 3OCEA 4L57A 3U19A 3CZOA 1DOFA 2VD6A 2FUSA 5H8WA 2PTSA 3RD8A 1EB4A 4C6GA 1VDKA 2JARA 3F4SA 3QBPA 4C5RA 1T6PA 3KDYA 4MWOA 2O6YA 1XLYA 4E88A 1GK2A 5EYVA 3C8TA 1RE5A 3CRW1 1TJVA 4V2RA 1GKMA 3BHGA 2YIIA 2RJRA 3TV2A 1FUOA 1K7WA 1C3UA 4FFXA 1TJUA 2X75A 1Z4LA 3RRPA 1Q91A 4APAA 4NFLA 4ADMA 2O7BA 1Z4JA 2JAWA 2YV5A 1XL8A 3GTDA 3BWVA 2O7DA 2J91A 4WNLA 2QGAB 5D6BA 4BAAA 4YIKA 2RCNA 1KQ7A 2VL7A 3R6YA 4CQ5A 1U0LA 4EEIA 1HY0A 5M0IA 1W27A 1T6JA 4A15A 2NYNA 2FELA 2JAUA 3U13A 1Q5NA 2E9FA 1GKJA 1XL7A 5HW2A 3F4RA 2RJSA
chains in the Genus database with same CATH topology
2O78A 1DCNA 3UNVA 4EFCA 1AUWA 5F91A 1YISA 2O7FA 1I0AA 4C5UA 4V2QA 4MX2A 1TJ7A 4HGVA 1XWOA 1FURA 1FUQA 1YFMA 2PTQA 2PTRA 1Y2MA 1HY1A 3GZHA 3NO9A 1B8FA 2O7EA 4C5SA 1GK3A 5F92A 3NZ4A 3OCFA 2NYFA 2PFMA 5EYTA 4BABA 4NLEA 3E04A 2QVEA 4ADLA 1YFEA 1C3CA 3R6QA 4NSLA 2HVGA 1J3UA 3KDZA 3R6VA 1TJWA 1FUPA 1U15A 4FLCA 1K62A 1JSWA 2OHYA 4APBA 1U16A 3OCEA 3CZOA 1DOFA 2VD6A 2FUSA 2PTSA 3RD8A 1EB4A 4C6GA 1VDKA 3QBPA 4C5RA 1T6PA 3KDYA 2O6YA 1GK2A 5EYVA 3C8TA 1RE5A 1TJVA 4V2RA 1GKMA 3BHGA 2YIIA 2RJRA 3TV2A 1FUOA 1K7WA 1C3UA 4FFXA 1TJUA 2X75A 3RRPA 4APAA 4ADMA 2O7BA 3GTDA 2O7DA 2J91A 2QGAB 5D6BA 4BAAA 1KQ7A 3R6YA 4CQ5A 4EEIA 1HY0A 1W27A 1T6JA 2NYNA 1Q5NA 2E9FA 1GKJA 5HW2A 2RJSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O78 A;  1DCN A;  3UNV A;  4EFC A;  1AUW A;  5F91 A;  1YIS A;  2O7F A;  1I0A A;  4C5U A;  4V2Q A;  4MX2 A;  1TJ7 A;  4HGV A;  1XWO A;  1FUR A;  1FUQ A;  1YFM A;  2PTQ A;  2PTR A;  1Y2M A;  1HY1 A;  3GZH A;  3NO9 A;  1B8F A;  2O7E A;  4C5S A;  1GK3 A;  5F92 A;  3NZ4 A;  3OCF A;  2NYF A;  2PFM A;  5EYT A;  4BAB A;  4NLE A;  3E04 A;  2QVE A;  4ADL A;  1YFE A;  1C3C A;  3R6Q A;  4NSL A;  2HVG A;  1J3U A;  3KDZ A;  3R6V A;  1TJW A;  1FUP A;  1U15 A;  4FLC A;  1K62 A;  1JSW A;  2OHY A;  4APB A;  1U16 A;  3OCE A;  3CZO A;  1DOF A;  2VD6 A;  2FUS A;  2PTS A;  3RD8 A;  1EB4 A;  4C6G A;  1VDK A;  3QBP A;  4C5R A;  1T6P A;  3KDY A;  2O6Y A;  1GK2 A;  5EYV A;  3C8T A;  1RE5 A;  1TJV A;  4V2R A;  1GKM A;  3BHG A;  2YII A;  2RJR A;  3TV2 A;  1FUO A;  1K7W A;  1C3U A;  4FFX A;  1TJU A;  2X75 A;  3RRP A;  4APA A;  4ADM A;  2O7B A;  3GTD A;  2O7D A;  2J91 A;  2QGA B;  5D6B A;  4BAA A;  1KQ7 A;  3R6Y A;  4CQ5 A;  4EEI A;  1HY0 A;  1W27 A;  1T6J A;  2NYN A;  1Q5N A;  2E9F A;  1GKJ A;  5HW2 A;  2RJS A; 
#chains in the Genus database with same CATH topology
 2O78 A;  1DCN A;  3CRV A;  3UNV A;  4MUM A;  1AUW A;  5F91 A;  2D28 C;  3F4T A;  4EFC A;  1YIS A;  1T9H A;  2O7F A;  1I0A A;  4C5U A;  4V2Q A;  4MX2 A;  1TJ7 A;  4HGV A;  1XWO A;  1Z4Q A;  1FUR A;  1Q92 A;  1Z4M A;  1FUQ A;  1YFM A;  2PTQ A;  1XMC A;  2PTR A;  1Y2M A;  1HY1 A;  2VSF A;  3GZH A;  3NO9 A;  1B8F A;  2O7E A;  4C5S A;  4L6A A;  1GK3 A;  1Z4P X;  5M0J A;  5F92 A;  3NZ4 A;  3OCF A;  1IW7 D;  2JAO A;  2FEN A;  2NYF A;  4YIH A;  2PFM A;  1XMD A;  2I7D A;  5EYT A;  4BAB A;  4NLE A;  2D27 A;  3E04 A;  2QVE A;  1MH9 A;  4ADL A;  1YFE A;  1Z4I A;  1C3C A;  3CI0 K;  3R6Q A;  4L6C A;  1Z4K A;  4NSL A;  2HVG A;  1J3U A;  4IQJ M;  3KDZ A;  3R6V A;  1TJW A;  1FUP A;  1U15 A;  4FLC A;  1K62 A;  1JSW A;  2OHY A;  4APB A;  1U16 A;  3OCE A;  4L57 A;  3U19 A;  3CZO A;  1DOF A;  2VD6 A;  2FUS A;  5H8W A;  2PTS A;  3RD8 A;  1EB4 A;  4C6G A;  1VDK A;  2JAR A;  3F4S A;  3QBP A;  4C5R A;  1T6P A;  3KDY A;  4MWO A;  2O6Y A;  1XLY A;  4E88 A;  1GK2 A;  5EYV A;  3C8T A;  1RE5 A;  3CRW 1;  1TJV A;  4V2R A;  1GKM A;  3BHG A;  2YII A;  2RJR A;  3TV2 A;  1FUO A;  1K7W A;  1C3U A;  4FFX A;  1TJU A;  2X75 A;  1Z4L A;  3RRP A;  1Q91 A;  4APA A;  4NFL A;  4ADM A;  2O7B A;  1Z4J A;  2JAW A;  2YV5 A;  1XL8 A;  3GTD A;  3BWV A;  2O7D A;  2J91 A;  4WNL A;  2QGA B;  5D6B A;  4BAA A;  4YIK A;  2RCN A;  1KQ7 A;  2VL7 A;  3R6Y A;  4CQ5 A;  1U0L A;  4EEI A;  1HY0 A;  5M0I A;  1W27 A;  1T6J A;  4A15 A;  2NYN A;  2FEL A;  2JAU A;  3U13 A;  1Q5N A;  2E9F A;  1GKJ A;  1XL7 A;  5HW2 A;  3F4R A;  2RJS A; 
#chains in the Genus database with same CATH homology
 2O78 A;  1DCN A;  3UNV A;  4EFC A;  1AUW A;  5F91 A;  1YIS A;  2O7F A;  1I0A A;  4C5U A;  4V2Q A;  4MX2 A;  1TJ7 A;  4HGV A;  1XWO A;  1FUR A;  1FUQ A;  1YFM A;  2PTQ A;  2PTR A;  1Y2M A;  1HY1 A;  3GZH A;  3NO9 A;  1B8F A;  2O7E A;  4C5S A;  1GK3 A;  5F92 A;  3NZ4 A;  3OCF A;  2NYF A;  2PFM A;  5EYT A;  4BAB A;  4NLE A;  3E04 A;  2QVE A;  4ADL A;  1YFE A;  1C3C A;  3R6Q A;  4NSL A;  2HVG A;  1J3U A;  3KDZ A;  3R6V A;  1TJW A;  1FUP A;  1U15 A;  4FLC A;  1K62 A;  1JSW A;  2OHY A;  4APB A;  1U16 A;  3OCE A;  3CZO A;  1DOF A;  2VD6 A;  2FUS A;  2PTS A;  3RD8 A;  1EB4 A;  4C6G A;  1VDK A;  3QBP A;  4C5R A;  1T6P A;  3KDY A;  2O6Y A;  1GK2 A;  5EYV A;  3C8T A;  1RE5 A;  1TJV A;  4V2R A;  1GKM A;  3BHG A;  2YII A;  2RJR A;  3TV2 A;  1FUO A;  1K7W A;  1C3U A;  4FFX A;  1TJU A;  2X75 A;  3RRP A;  4APA A;  4ADM A;  2O7B A;  3GTD A;  2O7D A;  2J91 A;  2QGA B;  5D6B A;  4BAA A;  1KQ7 A;  3R6Y A;  4CQ5 A;  4EEI A;  1HY0 A;  1W27 A;  1T6J A;  2NYN A;  1Q5N A;  2E9F A;  1GKJ A;  5HW2 A;  2RJS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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