3OCFA

Crystal structure of fumarate lyase:delta crystallin from brucella melitensis in native form
Total Genus 171
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
171
sequence length
455
structure length
444
Chain Sequence
TRREQDSLGERDIPMDAYFGIQTLRAVENFSLSDVALNHIPALVRALAMVKKAAATANYKLRQLPEPKYAAIVAACDDIIDGLLMEQFVVDVFQGGAGTSSNMNANEVIANRALEHLGRPRGDYQTIHPNDDVNMSQSTNDVYPTAVRLALLLSQNQVQTALHRLIAAFEAKGREFATVIKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGAYAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGEIRLPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNAFEPLIVYNILSSMRLLGRAMTNLAERCVDGIEANVERCRAGAEESISLATALVPVVGYARAAEIAKQALASGQTVMEVAISKGLDASALTIMLDPLR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Fumarate lyase:Delta crystallin
publication title Crystal structure of fumarate lyase:delta crystallin from Brucella melitensis in native form
rcsb
source organism Brucella melitensis
total genus 171
structure length 444
sequence length 455
chains with identical sequence B, C, D
ec nomenclature ec 4.3.1.1: Aspartate ammonia-lyase.
pdb deposition date 2010-08-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 3ocfA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3ocfA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3ocfA02
1T6PA 3C8TA 1EB4A 2NYFA 5F91A 4NSLA 1RE5A 1GK2A 1Y2MA 3QBPA 2NYNA 3CZOA 2PTQA 4NLEA 1T6JA 4C5SA 1FUOA 1YFEA 1C3CA 5F92A 3R6VA 1FUPA 4CQ5A 3E04A 2O7BA 2HVGA 1TJVA 4APAA 1KQ7A 2O7FA 1JSWA 4EFCA 3GTDA 1FURA 1B8FA 1Q5NA 1I0AA 1YISA 1HY1A 2O6YA 1C3UA 1DOFA 4ADMA 2FUSA 5HW2A 3OCEA 1GKJA 4HGVA 4EEIA 2QVEA 3KDYA 2J91A 2RJRA 2PFMA 2RJSA 5D6BA 5EYTA 4V2RA 2OHYA 4FFXA 1K7WA 1TJ7A 3RD8A 1DCNA 1AUWA 2VD6A 4C5RA 1J3UA 2X75A 3BHGA 1W27A 1TJUA 1XWOA 4V2QA 3R6YA 2YIIA 2O7EA 4FLCA 4C5UA 2QGAB 1YFMA 2PTSA 1K62A 3TV2A 3OCFA 4BABA 4ADLA 5EYVA 4BAAA 1U16A 2E9FA 1GKMA 1HY0A 3RRPA 1U15A 1FUQA 4C6GA 2O78A 3GZHA 3R6QA 3UNVA 1GK3A 2O7DA 4APBA 4MX2A 2PTRA 3KDZA 3NO9A 1TJWA 1VDKA 3NZ4A
chains in the Genus database with same CATH superfamily
1T6PA 3C8TA 1EB4A 2NYFA 5F91A 5H8WA 4NSLA 1RE5A 1GK2A 1Y2MA 1T9HA 3QBPA 1XLYA 2NYNA 3CZOA 2PTQA 4NLEA 2D28C 1Q92A 1T6JA 4L57A 4A15A 4C5SA 1FUOA 1YFEA 1Z4KA 4MWOA 1C3CA 5F92A 3R6VA 1FUPA 2VL7A 4WNLA 4CQ5A 3E04A 2O7BA 2HVGA 1XL7A 1TJVA 4APAA 1KQ7A 1Z4QA 3F4SA 2O7FA 1JSWA 4EFCA 3BWVA 3GTDA 1FURA 1B8FA 5M0IA 1Q5NA 1Z4MA 1I0AA 1MH9A 1HY1A 1Z4PX 1YISA 2O6YA 1C3UA 1DOFA 4ADMA 2JAUA 3F4TA 2FUSA 1U0LA 5HW2A 3OCEA 2D27A 2JARA 1GKJA 4HGVA 4EEIA 2QVEA 2JAWA 3KDYA 1Z4LA 2I7DA 2J91A 2RJRA 2PFMA 4E88A 2VSFA 2RCNA 2RJSA 5D6BA 5EYTA 4V2RA 1Z4JA 1XMDA 2OHYA 4FFXA 1K7WA 5M0JA 1IW7D 4L6CA 1TJ7A 3RD8A 1DCNA 1AUWA 1XL8A 2VD6A 4YIKA 4C5RA 1J3UA 3U19A 2X75A 3BHGA 4IQJM 1W27A 1TJUA 1XWOA 4V2QA 3R6YA 3U13A 3CRW1 2YIIA 2O7EA 4FLCA 4C5UA 4YIHA 2QGAB 1YFMA 2PTSA 1K62A 1Z4IA 3TV2A 2FELA 3OCFA 4BABA 4ADLA 5EYVA 4BAAA 1U16A 2E9FA 1GKMA 1HY0A 1XMCA 3RRPA 4MUMA 1U15A 1FUQA 4C6GA 2O78A 3GZHA 2YV5A 3R6QA 3UNVA 1GK3A 2JAOA 2O7DA 3CRVA 4APBA 4L6AA 1Q91A 4MX2A 3F4RA 3CI0K 2PTRA 2FENA 3KDZA 3NO9A 1TJWA 4NFLA 1VDKA 3NZ4A
chains in the Genus database with same CATH topology
1T6PA 3C8TA 1EB4A 2NYFA 5F91A 4NSLA 1RE5A 1GK2A 1Y2MA 3QBPA 2NYNA 3CZOA 2PTQA 4NLEA 1T6JA 4C5SA 1FUOA 1YFEA 1C3CA 5F92A 3R6VA 1FUPA 4CQ5A 3E04A 2O7BA 2HVGA 1TJVA 4APAA 1KQ7A 2O7FA 1JSWA 4EFCA 3GTDA 1FURA 1B8FA 1Q5NA 1I0AA 1YISA 1HY1A 2O6YA 1C3UA 1DOFA 4ADMA 2FUSA 5HW2A 3OCEA 1GKJA 4HGVA 4EEIA 2QVEA 3KDYA 2J91A 2RJRA 2PFMA 2RJSA 5D6BA 5EYTA 4V2RA 2OHYA 4FFXA 1K7WA 1TJ7A 3RD8A 1DCNA 1AUWA 2VD6A 4C5RA 1J3UA 2X75A 3BHGA 1W27A 1TJUA 1XWOA 4V2QA 3R6YA 2YIIA 2O7EA 4FLCA 4C5UA 2QGAB 1YFMA 2PTSA 1K62A 3TV2A 3OCFA 4BABA 4ADLA 5EYVA 4BAAA 1U16A 2E9FA 1GKMA 1HY0A 3RRPA 1U15A 1FUQA 4C6GA 2O78A 3GZHA 3R6QA 3UNVA 1GK3A 2O7DA 4APBA 4MX2A 2PTRA 3KDZA 3NO9A 1TJWA 1VDKA 3NZ4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1T6P A;  3C8T A;  1EB4 A;  2NYF A;  5F91 A;  4NSL A;  1RE5 A;  1GK2 A;  1Y2M A;  3QBP A;  2NYN A;  3CZO A;  2PTQ A;  4NLE A;  1T6J A;  4C5S A;  1FUO A;  1YFE A;  1C3C A;  5F92 A;  3R6V A;  1FUP A;  4CQ5 A;  3E04 A;  2O7B A;  2HVG A;  1TJV A;  4APA A;  1KQ7 A;  2O7F A;  1JSW A;  4EFC A;  3GTD A;  1FUR A;  1B8F A;  1Q5N A;  1I0A A;  1YIS A;  1HY1 A;  2O6Y A;  1C3U A;  1DOF A;  4ADM A;  2FUS A;  5HW2 A;  3OCE A;  1GKJ A;  4HGV A;  4EEI A;  2QVE A;  3KDY A;  2J91 A;  2RJR A;  2PFM A;  2RJS A;  5D6B A;  5EYT A;  4V2R A;  2OHY A;  4FFX A;  1K7W A;  1TJ7 A;  3RD8 A;  1DCN A;  1AUW A;  2VD6 A;  4C5R A;  1J3U A;  2X75 A;  3BHG A;  1W27 A;  1TJU A;  1XWO A;  4V2Q A;  3R6Y A;  2YII A;  2O7E A;  4FLC A;  4C5U A;  2QGA B;  1YFM A;  2PTS A;  1K62 A;  3TV2 A;  3OCF A;  4BAB A;  4ADL A;  5EYV A;  4BAA A;  1U16 A;  2E9F A;  1GKM A;  1HY0 A;  3RRP A;  1U15 A;  1FUQ A;  4C6G A;  2O78 A;  3GZH A;  3R6Q A;  3UNV A;  1GK3 A;  2O7D A;  4APB A;  4MX2 A;  2PTR A;  3KDZ A;  3NO9 A;  1TJW A;  1VDK A;  3NZ4 A; 
#chains in the Genus database with same CATH topology
 1T6P A;  3C8T A;  1EB4 A;  2NYF A;  5F91 A;  5H8W A;  4NSL A;  1RE5 A;  1GK2 A;  1Y2M A;  1T9H A;  3QBP A;  1XLY A;  2NYN A;  3CZO A;  2PTQ A;  4NLE A;  2D28 C;  1Q92 A;  1T6J A;  4L57 A;  4A15 A;  4C5S A;  1FUO A;  1YFE A;  1Z4K A;  4MWO A;  1C3C A;  5F92 A;  3R6V A;  1FUP A;  2VL7 A;  4WNL A;  4CQ5 A;  3E04 A;  2O7B A;  2HVG A;  1XL7 A;  1TJV A;  4APA A;  1KQ7 A;  1Z4Q A;  3F4S A;  2O7F A;  1JSW A;  4EFC A;  3BWV A;  3GTD A;  1FUR A;  1B8F A;  5M0I A;  1Q5N A;  1Z4M A;  1I0A A;  1MH9 A;  1HY1 A;  1Z4P X;  1YIS A;  2O6Y A;  1C3U A;  1DOF A;  4ADM A;  2JAU A;  3F4T A;  2FUS A;  1U0L A;  5HW2 A;  3OCE A;  2D27 A;  2JAR A;  1GKJ A;  4HGV A;  4EEI A;  2QVE A;  2JAW A;  3KDY A;  1Z4L A;  2I7D A;  2J91 A;  2RJR A;  2PFM A;  4E88 A;  2VSF A;  2RCN A;  2RJS A;  5D6B A;  5EYT A;  4V2R A;  1Z4J A;  1XMD A;  2OHY A;  4FFX A;  1K7W A;  5M0J A;  1IW7 D;  4L6C A;  1TJ7 A;  3RD8 A;  1DCN A;  1AUW A;  1XL8 A;  2VD6 A;  4YIK A;  4C5R A;  1J3U A;  3U19 A;  2X75 A;  3BHG A;  4IQJ M;  1W27 A;  1TJU A;  1XWO A;  4V2Q A;  3R6Y A;  3U13 A;  3CRW 1;  2YII A;  2O7E A;  4FLC A;  4C5U A;  4YIH A;  2QGA B;  1YFM A;  2PTS A;  1K62 A;  1Z4I A;  3TV2 A;  2FEL A;  3OCF A;  4BAB A;  4ADL A;  5EYV A;  4BAA A;  1U16 A;  2E9F A;  1GKM A;  1HY0 A;  1XMC A;  3RRP A;  4MUM A;  1U15 A;  1FUQ A;  4C6G A;  2O78 A;  3GZH A;  2YV5 A;  3R6Q A;  3UNV A;  1GK3 A;  2JAO A;  2O7D A;  3CRV A;  4APB A;  4L6A A;  1Q91 A;  4MX2 A;  3F4R A;  3CI0 K;  2PTR A;  2FEN A;  3KDZ A;  3NO9 A;  1TJW A;  4NFL A;  1VDK A;  3NZ4 A; 
#chains in the Genus database with same CATH homology
 1T6P A;  3C8T A;  1EB4 A;  2NYF A;  5F91 A;  4NSL A;  1RE5 A;  1GK2 A;  1Y2M A;  3QBP A;  2NYN A;  3CZO A;  2PTQ A;  4NLE A;  1T6J A;  4C5S A;  1FUO A;  1YFE A;  1C3C A;  5F92 A;  3R6V A;  1FUP A;  4CQ5 A;  3E04 A;  2O7B A;  2HVG A;  1TJV A;  4APA A;  1KQ7 A;  2O7F A;  1JSW A;  4EFC A;  3GTD A;  1FUR A;  1B8F A;  1Q5N A;  1I0A A;  1YIS A;  1HY1 A;  2O6Y A;  1C3U A;  1DOF A;  4ADM A;  2FUS A;  5HW2 A;  3OCE A;  1GKJ A;  4HGV A;  4EEI A;  2QVE A;  3KDY A;  2J91 A;  2RJR A;  2PFM A;  2RJS A;  5D6B A;  5EYT A;  4V2R A;  2OHY A;  4FFX A;  1K7W A;  1TJ7 A;  3RD8 A;  1DCN A;  1AUW A;  2VD6 A;  4C5R A;  1J3U A;  2X75 A;  3BHG A;  1W27 A;  1TJU A;  1XWO A;  4V2Q A;  3R6Y A;  2YII A;  2O7E A;  4FLC A;  4C5U A;  2QGA B;  1YFM A;  2PTS A;  1K62 A;  3TV2 A;  3OCF A;  4BAB A;  4ADL A;  5EYV A;  4BAA A;  1U16 A;  2E9F A;  1GKM A;  1HY0 A;  3RRP A;  1U15 A;  1FUQ A;  4C6G A;  2O78 A;  3GZH A;  3R6Q A;  3UNV A;  1GK3 A;  2O7D A;  4APB A;  4MX2 A;  2PTR A;  3KDZ A;  3NO9 A;  1TJW A;  1VDK A;  3NZ4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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