1HY0A

Crystal structure of wild type duck delta 1 crystallin (eye lens protein)
Total Genus 183
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
183
sequence length
447
structure length
447
Chain Sequence
DPIMQMLSTSISTEQRLSEVDIQASIAYAKALEKAGILTKTELEKILSGLEKISEELSKGVIVVTQSDEDIQTANERRLKELIGDIAGKLHTGRSRNEQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSVATLLLIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKSGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVIDVVDTLTAVLQVATGVISTLQISKENMEKALTPEMLATDLALYLVRKGMPFRQAHTASGKAVHLAETKGIAINNLTLEDLKSISPLFSSDVSQVFNFVNSVEQYTALGGTAKSSVTTQIEQLRELMKKQKE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords DELTA CRYSTALLIN I
publication title Structural studies of duck delta 1 and delta 2 crystallin suggest conformational changes occur during catalysis.
pubmed doi rcsb
source organism Anas platyrhynchos
total genus 183
structure length 447
sequence length 447
chains with identical sequence B
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 2001-01-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1hy0A03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1hy0A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1hy0A02
1GK2A 1RE5A 1J3UA 2FUSA 3BHGA 2RJSA 3KDZA 3E04A 2PTRA 1TJVA 2NYNA 3RRPA 3RD8A 1GKMA 2HVGA 1YISA 2OHYA 1GKJA 3UNVA 1FUPA 1AUWA 4MX2A 1VDKA 4CQ5A 4FLCA 3KDYA 1C3CA 4V2RA 1HY1A 3OCFA 1TJUA 1YFMA 5HW2A 1YFEA 2O78A 4APBA 2PTQA 4C5RA 1K62A 1B8FA 3GTDA 5F91A 3CZOA 5EYTA 2VD6A 1EB4A 4APAA 1FURA 1FUOA 1I0AA 1W27A 1FUQA 2O7EA 3GZHA 1DOFA 3NZ4A 1C3UA 2NYFA 3R6YA 4C5SA 3R6VA 2YIIA 2O7FA 2X75A 4NSLA 5D6BA 4C6GA 2O7DA 4V2QA 4ADLA 4BAAA 3NO9A 3QBPA 1K7WA 1Q5NA 1U16A 4EEIA 1KQ7A 2QVEA 4FFXA 2O6YA 1JSWA 4ADMA 3TV2A 5EYVA 1U15A 4BABA 2PTSA 3R6QA 2E9FA 1XWOA 3OCEA 2QGAB 3C8TA 1GK3A 4C5UA 4EFCA 1DCNA 2RJRA 5F92A 2O7BA 2J91A 1Y2MA 2PFMA 1HY0A 1T6JA 4HGVA 1TJ7A 4NLEA 1T6PA 1TJWA
chains in the Genus database with same CATH superfamily
1GK2A 1RE5A 1Z4MA 1J3UA 2FUSA 3BHGA 2RJSA 3KDZA 2FENA 3E04A 1IW7D 2JAOA 3U13A 2PTRA 2JAUA 2D28C 1TJVA 2NYNA 4L6AA 3RRPA 3RD8A 1U0LA 1GKMA 2HVGA 1YISA 1XL7A 4YIHA 1T9HA 2OHYA 3BWVA 1GKJA 3UNVA 1MH9A 1FUPA 1AUWA 4MX2A 1VDKA 4CQ5A 4FLCA 3U19A 3KDYA 1C3CA 4V2RA 1Z4PX 3OCFA 1HY1A 4NFLA 1TJUA 1YFMA 5HW2A 1YFEA 2O78A 4APBA 3F4SA 2PTQA 4C5RA 1K62A 1B8FA 1Q92A 3F4TA 3GTDA 5F91A 3CZOA 5EYTA 2YV5A 2VD6A 1EB4A 4APAA 1FURA 1FUOA 1I0AA 1W27A 1Z4KA 1FUQA 2O7EA 3GZHA 1DOFA 3NZ4A 1C3UA 2NYFA 3R6YA 5M0IA 4C5SA 3R6VA 2YIIA 2O7FA 2VSFA 2X75A 4L6CA 4NSLA 5D6BA 1Z4IA 4E88A 4C6GA 2O7DA 4V2QA 4ADLA 2RCNA 4BAAA 2JARA 2I7DA 3NO9A 3QBPA 1K7WA 1Q5NA 1U16A 4EEIA 1KQ7A 4L57A 3CRW1 2QVEA 4FFXA 2O6YA 1Z4LA 1JSWA 4YIKA 4ADMA 3TV2A 4MWOA 5EYVA 3CI0K 1U15A 4BABA 2JAWA 2PTSA 1XLYA 5M0JA 3R6QA 2E9FA 1XWOA 3OCEA 5H8WA 2QGAB 1XMCA 3C8TA 1GK3A 4C5UA 3F4RA 4EFCA 2FELA 1DCNA 3CRVA 2RJRA 5F92A 4IQJM 2O7BA 2J91A 1XL8A 2D27A 1Y2MA 4A15A 2PFMA 4WNLA 1HY0A 4HGVA 1T6JA 1TJ7A 4NLEA 1T6PA 1Q91A 1Z4QA 1XMDA 4MUMA 2VL7A 1TJWA 1Z4JA
chains in the Genus database with same CATH topology
1GK2A 1RE5A 1J3UA 2FUSA 3BHGA 2RJSA 3KDZA 3E04A 2PTRA 1TJVA 2NYNA 3RRPA 3RD8A 1GKMA 2HVGA 1YISA 2OHYA 1GKJA 3UNVA 1FUPA 1AUWA 4MX2A 1VDKA 4CQ5A 4FLCA 3KDYA 1C3CA 4V2RA 1HY1A 3OCFA 1TJUA 1YFMA 5HW2A 1YFEA 2O78A 4APBA 2PTQA 4C5RA 1K62A 1B8FA 3GTDA 5F91A 3CZOA 5EYTA 2VD6A 1EB4A 4APAA 1FURA 1FUOA 1I0AA 1W27A 1FUQA 2O7EA 3GZHA 1DOFA 3NZ4A 1C3UA 2NYFA 3R6YA 4C5SA 3R6VA 2YIIA 2O7FA 2X75A 4NSLA 5D6BA 4C6GA 2O7DA 4V2QA 4ADLA 4BAAA 3NO9A 3QBPA 1K7WA 1Q5NA 1U16A 4EEIA 1KQ7A 2QVEA 4FFXA 2O6YA 1JSWA 4ADMA 3TV2A 5EYVA 1U15A 4BABA 2PTSA 3R6QA 2E9FA 1XWOA 3OCEA 2QGAB 3C8TA 1GK3A 4C5UA 4EFCA 1DCNA 2RJRA 5F92A 2O7BA 2J91A 1Y2MA 2PFMA 1HY0A 1T6JA 4HGVA 1TJ7A 4NLEA 1T6PA 1TJWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GK2 A;  1RE5 A;  1J3U A;  2FUS A;  3BHG A;  2RJS A;  3KDZ A;  3E04 A;  2PTR A;  1TJV A;  2NYN A;  3RRP A;  3RD8 A;  1GKM A;  2HVG A;  1YIS A;  2OHY A;  1GKJ A;  3UNV A;  1FUP A;  1AUW A;  4MX2 A;  1VDK A;  4CQ5 A;  4FLC A;  3KDY A;  1C3C A;  4V2R A;  1HY1 A;  3OCF A;  1TJU A;  1YFM A;  5HW2 A;  1YFE A;  2O78 A;  4APB A;  2PTQ A;  4C5R A;  1K62 A;  1B8F A;  3GTD A;  5F91 A;  3CZO A;  5EYT A;  2VD6 A;  1EB4 A;  4APA A;  1FUR A;  1FUO A;  1I0A A;  1W27 A;  1FUQ A;  2O7E A;  3GZH A;  1DOF A;  3NZ4 A;  1C3U A;  2NYF A;  3R6Y A;  4C5S A;  3R6V A;  2YII A;  2O7F A;  2X75 A;  4NSL A;  5D6B A;  4C6G A;  2O7D A;  4V2Q A;  4ADL A;  4BAA A;  3NO9 A;  3QBP A;  1K7W A;  1Q5N A;  1U16 A;  4EEI A;  1KQ7 A;  2QVE A;  4FFX A;  2O6Y A;  1JSW A;  4ADM A;  3TV2 A;  5EYV A;  1U15 A;  4BAB A;  2PTS A;  3R6Q A;  2E9F A;  1XWO A;  3OCE A;  2QGA B;  3C8T A;  1GK3 A;  4C5U A;  4EFC A;  1DCN A;  2RJR A;  5F92 A;  2O7B A;  2J91 A;  1Y2M A;  2PFM A;  1HY0 A;  1T6J A;  4HGV A;  1TJ7 A;  4NLE A;  1T6P A;  1TJW A; 
#chains in the Genus database with same CATH topology
 1GK2 A;  1RE5 A;  1Z4M A;  1J3U A;  2FUS A;  3BHG A;  2RJS A;  3KDZ A;  2FEN A;  3E04 A;  1IW7 D;  2JAO A;  3U13 A;  2PTR A;  2JAU A;  2D28 C;  1TJV A;  2NYN A;  4L6A A;  3RRP A;  3RD8 A;  1U0L A;  1GKM A;  2HVG A;  1YIS A;  1XL7 A;  4YIH A;  1T9H A;  2OHY A;  3BWV A;  1GKJ A;  3UNV A;  1MH9 A;  1FUP A;  1AUW A;  4MX2 A;  1VDK A;  4CQ5 A;  4FLC A;  3U19 A;  3KDY A;  1C3C A;  4V2R A;  1Z4P X;  3OCF A;  1HY1 A;  4NFL A;  1TJU A;  1YFM A;  5HW2 A;  1YFE A;  2O78 A;  4APB A;  3F4S A;  2PTQ A;  4C5R A;  1K62 A;  1B8F A;  1Q92 A;  3F4T A;  3GTD A;  5F91 A;  3CZO A;  5EYT A;  2YV5 A;  2VD6 A;  1EB4 A;  4APA A;  1FUR A;  1FUO A;  1I0A A;  1W27 A;  1Z4K A;  1FUQ A;  2O7E A;  3GZH A;  1DOF A;  3NZ4 A;  1C3U A;  2NYF A;  3R6Y A;  5M0I A;  4C5S A;  3R6V A;  2YII A;  2O7F A;  2VSF A;  2X75 A;  4L6C A;  4NSL A;  5D6B A;  1Z4I A;  4E88 A;  4C6G A;  2O7D A;  4V2Q A;  4ADL A;  2RCN A;  4BAA A;  2JAR A;  2I7D A;  3NO9 A;  3QBP A;  1K7W A;  1Q5N A;  1U16 A;  4EEI A;  1KQ7 A;  4L57 A;  3CRW 1;  2QVE A;  4FFX A;  2O6Y A;  1Z4L A;  1JSW A;  4YIK A;  4ADM A;  3TV2 A;  4MWO A;  5EYV A;  3CI0 K;  1U15 A;  4BAB A;  2JAW A;  2PTS A;  1XLY A;  5M0J A;  3R6Q A;  2E9F A;  1XWO A;  3OCE A;  5H8W A;  2QGA B;  1XMC A;  3C8T A;  1GK3 A;  4C5U A;  3F4R A;  4EFC A;  2FEL A;  1DCN A;  3CRV A;  2RJR A;  5F92 A;  4IQJ M;  2O7B A;  2J91 A;  1XL8 A;  2D27 A;  1Y2M A;  4A15 A;  2PFM A;  4WNL A;  1HY0 A;  4HGV A;  1T6J A;  1TJ7 A;  4NLE A;  1T6P A;  1Q91 A;  1Z4Q A;  1XMD A;  4MUM A;  2VL7 A;  1TJW A;  1Z4J A; 
#chains in the Genus database with same CATH homology
 1GK2 A;  1RE5 A;  1J3U A;  2FUS A;  3BHG A;  2RJS A;  3KDZ A;  3E04 A;  2PTR A;  1TJV A;  2NYN A;  3RRP A;  3RD8 A;  1GKM A;  2HVG A;  1YIS A;  2OHY A;  1GKJ A;  3UNV A;  1FUP A;  1AUW A;  4MX2 A;  1VDK A;  4CQ5 A;  4FLC A;  3KDY A;  1C3C A;  4V2R A;  1HY1 A;  3OCF A;  1TJU A;  1YFM A;  5HW2 A;  1YFE A;  2O78 A;  4APB A;  2PTQ A;  4C5R A;  1K62 A;  1B8F A;  3GTD A;  5F91 A;  3CZO A;  5EYT A;  2VD6 A;  1EB4 A;  4APA A;  1FUR A;  1FUO A;  1I0A A;  1W27 A;  1FUQ A;  2O7E A;  3GZH A;  1DOF A;  3NZ4 A;  1C3U A;  2NYF A;  3R6Y A;  4C5S A;  3R6V A;  2YII A;  2O7F A;  2X75 A;  4NSL A;  5D6B A;  4C6G A;  2O7D A;  4V2Q A;  4ADL A;  4BAA A;  3NO9 A;  3QBP A;  1K7W A;  1Q5N A;  1U16 A;  4EEI A;  1KQ7 A;  2QVE A;  4FFX A;  2O6Y A;  1JSW A;  4ADM A;  3TV2 A;  5EYV A;  1U15 A;  4BAB A;  2PTS A;  3R6Q A;  2E9F A;  1XWO A;  3OCE A;  2QGA B;  3C8T A;  1GK3 A;  4C5U A;  4EFC A;  1DCN A;  2RJR A;  5F92 A;  2O7B A;  2J91 A;  1Y2M A;  2PFM A;  1HY0 A;  1T6J A;  4HGV A;  1TJ7 A;  4NLE A;  1T6P A;  1TJW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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