1HY0A

Crystal structure of wild type duck delta 1 crystallin (eye lens protein)
Total Genus 183
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
183
sequence length
447
structure length
447
Chain Sequence
b'DPIMQMLSTSISTEQRLSEVDIQASIAYAKALEKAGILTKTELEKILSGLEKISEELSKGVIVVTQSDEDIQTANERRLKELIGDIAGKLHTGRSRNEQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSVATLLLIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKSGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVIDVVDTLTAVLQVATGVISTLQISKENMEKALTPEMLATDLALYLVRKGMPFRQAHTASGKAVHLAETKGIAINNLTLEDLKSISPLFSSDVSQVFNFVNSVEQYTALGGTAKSSVTTQIEQLRELMKKQKE'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural studies of duck delta 1 and delta 2 crystallin suggest conformational changes occur during catalysis.
pubmed doi rcsb
molecule keywords DELTA CRYSTALLIN I
source organism Anas platyrhynchos
molecule tags Lyase
total genus 183
structure length 447
sequence length 447
chains with identical sequence B
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 2001-01-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1hy0A03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1hy0A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1hy0A02
1JSWA 1HY0A 3C8TA 1GK2A 1DOFA 4C5RA 1U16A 4ADMA 3QBPA 4C6GA 4V2RA 1FURA 1K62A 3KDYA 3E04A 5EYVA 1TJUA 3TV2A 2FUSA 2O7BA 2O7FA 3R6QA 3R6VA 4NSLA 2J91A 1YISA 5D6BA 1W27A 1C3CA 2NYFA 1FUOA 4FLCA 2O7DA 1J3UA 1YFEA 2VD6A 2PTRA 1FUPA 4EEIA 4NLEA 3RRPA 1T6JA 4BAAA 1VDKA 2O78A 2NYNA 4V2QA 1GK3A 4C5UA 3GZHA 1KQ7A 1EB4A 4MX2A 2HVGA 3RD8A 1U15A 1B8FA 2PFMA 5F92A 4CQ5A 2X75A 1Q5NA 5HW2A 1C3UA 2QVEA 3NO9A 4APBA 1DCNA 2O7EA 1GKMA 3CZOA 2YIIA 1AUWA 1K7WA 5EYTA 3UNVA 4FFXA 1Y2MA 1FUQA 4ADLA 1RE5A 3OCFA 3NZ4A 4EFCA 1T6PA 1XWOA 1TJ7A 3BHGA 5F91A 1GKJA 3R6YA 4C5SA 2PTSA 2O6YA 3KDZA 2OHYA 1TJWA 2PTQA 3OCEA 2E9FA 2RJSA 1I0AA 4HGVA 4BABA 1YFMA 2QGAB 2RJRA 1HY1A 3GTDA 4APAA 1TJVA
chains in the Genus database with same CATH superfamily
2YV5A 1JSWA 1HY0A 3F4RA 3C8TA 1XLYA 1GK2A 1DOFA 4L57A 3U19A 2JAWA 1IW7D 1Z4IA 4C5RA 1U16A 4YIKA 3QBPA 4ADMA 4C6GA 2FELA 3F4SA 4V2RA 1FURA 1K62A 3KDYA 3E04A 5EYVA 1TJUA 3TV2A 2FUSA 2O7BA 2O7FA 3R6QA 3U13A 3R6VA 4NSLA 2J91A 2D28C 1YISA 5D6BA 1XMDA 1W27A 3CRW1 1C3CA 2NYFA 1FUOA 4FLCA 2VSFA 2VL7A 1Q91A 2O7DA 1Z4PX 2RCNA 1J3UA 1YFEA 1Z4LA 4L6AA 4MUMA 2VD6A 2PTRA 1FUPA 4EEIA 4L6CA 4NLEA 3RRPA 1MH9A 1T6JA 4BAAA 1VDKA 1T9HA 2JARA 2O78A 2NYNA 1Z4QA 2JAUA 4V2QA 1Q92A 1GK3A 4C5UA 2JAOA 3GZHA 1KQ7A 1EB4A 4MX2A 2HVGA 3RD8A 1XL8A 5M0JA 1XMCA 1U15A 1B8FA 1Z4KA 2PFMA 3CRVA 5F92A 4CQ5A 2X75A 1Q5NA 5HW2A 1C3UA 2QVEA 3NO9A 4APBA 1DCNA 1Z4JA 2O7EA 1GKMA 3CZOA 2YIIA 4YIHA 1AUWA 1K7WA 5EYTA 3UNVA 5H8WA 4FFXA 1Y2MA 1FUQA 1RE5A 4ADLA 3OCFA 4A15A 5M0IA 4NFLA 4EFCA 1T6PA 3NZ4A 1XWOA 1TJ7A 3BHGA 5F91A 1GKJA 3R6YA 4C5SA 2FENA 2PTSA 4WNLA 2I7DA 2O6YA 3KDZA 3CI0K 2OHYA 1TJWA 2D27A 1U0LA 3BWVA 2PTQA 3OCEA 2E9FA 2RJSA 1I0AA 3F4TA 1Z4MA 4HGVA 1XL7A 4BABA 1YFMA 4IQJM 2QGAB 4E88A 2RJRA 1HY1A 4MWOA 3GTDA 4APAA 1TJVA
chains in the Genus database with same CATH topology
1JSWA 1HY0A 3C8TA 1GK2A 1DOFA 4C5RA 1U16A 4ADMA 3QBPA 4C6GA 4V2RA 1FURA 1K62A 3KDYA 3E04A 5EYVA 1TJUA 3TV2A 2FUSA 2O7BA 2O7FA 3R6QA 3R6VA 4NSLA 2J91A 1YISA 5D6BA 1W27A 1C3CA 2NYFA 1FUOA 4FLCA 2O7DA 1J3UA 1YFEA 2VD6A 2PTRA 1FUPA 4EEIA 4NLEA 3RRPA 1T6JA 4BAAA 1VDKA 2O78A 2NYNA 4V2QA 1GK3A 4C5UA 3GZHA 1KQ7A 1EB4A 4MX2A 2HVGA 3RD8A 1U15A 1B8FA 2PFMA 5F92A 4CQ5A 2X75A 1Q5NA 5HW2A 1C3UA 2QVEA 3NO9A 4APBA 1DCNA 2O7EA 1GKMA 3CZOA 2YIIA 1AUWA 1K7WA 5EYTA 3UNVA 4FFXA 1Y2MA 1FUQA 4ADLA 1RE5A 3OCFA 3NZ4A 4EFCA 1T6PA 1XWOA 1TJ7A 3BHGA 5F91A 1GKJA 3R6YA 4C5SA 2PTSA 2O6YA 3KDZA 2OHYA 1TJWA 2PTQA 3OCEA 2E9FA 2RJSA 1I0AA 4HGVA 4BABA 1YFMA 2QGAB 2RJRA 1HY1A 3GTDA 4APAA 1TJVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JSW A;  1HY0 A;  3C8T A;  1GK2 A;  1DOF A;  4C5R A;  1U16 A;  4ADM A;  3QBP A;  4C6G A;  4V2R A;  1FUR A;  1K62 A;  3KDY A;  3E04 A;  5EYV A;  1TJU A;  3TV2 A;  2FUS A;  2O7B A;  2O7F A;  3R6Q A;  3R6V A;  4NSL A;  2J91 A;  1YIS A;  5D6B A;  1W27 A;  1C3C A;  2NYF A;  1FUO A;  4FLC A;  2O7D A;  1J3U A;  1YFE A;  2VD6 A;  2PTR A;  1FUP A;  4EEI A;  4NLE A;  3RRP A;  1T6J A;  4BAA A;  1VDK A;  2O78 A;  2NYN A;  4V2Q A;  1GK3 A;  4C5U A;  3GZH A;  1KQ7 A;  1EB4 A;  4MX2 A;  2HVG A;  3RD8 A;  1U15 A;  1B8F A;  2PFM A;  5F92 A;  4CQ5 A;  2X75 A;  1Q5N A;  5HW2 A;  1C3U A;  2QVE A;  3NO9 A;  4APB A;  1DCN A;  2O7E A;  1GKM A;  3CZO A;  2YII A;  1AUW A;  1K7W A;  5EYT A;  3UNV A;  4FFX A;  1Y2M A;  1FUQ A;  4ADL A;  1RE5 A;  3OCF A;  3NZ4 A;  4EFC A;  1T6P A;  1XWO A;  1TJ7 A;  3BHG A;  5F91 A;  1GKJ A;  3R6Y A;  4C5S A;  2PTS A;  2O6Y A;  3KDZ A;  2OHY A;  1TJW A;  2PTQ A;  3OCE A;  2E9F A;  2RJS A;  1I0A A;  4HGV A;  4BAB A;  1YFM A;  2QGA B;  2RJR A;  1HY1 A;  3GTD A;  4APA A;  1TJV A; 
#chains in the Genus database with same CATH topology
 2YV5 A;  1JSW A;  1HY0 A;  3F4R A;  3C8T A;  1XLY A;  1GK2 A;  1DOF A;  4L57 A;  3U19 A;  2JAW A;  1IW7 D;  1Z4I A;  4C5R A;  1U16 A;  4YIK A;  3QBP A;  4ADM A;  4C6G A;  2FEL A;  3F4S A;  4V2R A;  1FUR A;  1K62 A;  3KDY A;  3E04 A;  5EYV A;  1TJU A;  3TV2 A;  2FUS A;  2O7B A;  2O7F A;  3R6Q A;  3U13 A;  3R6V A;  4NSL A;  2J91 A;  2D28 C;  1YIS A;  5D6B A;  1XMD A;  1W27 A;  3CRW 1;  1C3C A;  2NYF A;  1FUO A;  4FLC A;  2VSF A;  2VL7 A;  1Q91 A;  2O7D A;  1Z4P X;  2RCN A;  1J3U A;  1YFE A;  1Z4L A;  4L6A A;  4MUM A;  2VD6 A;  2PTR A;  1FUP A;  4EEI A;  4L6C A;  4NLE A;  3RRP A;  1MH9 A;  1T6J A;  4BAA A;  1VDK A;  1T9H A;  2JAR A;  2O78 A;  2NYN A;  1Z4Q A;  2JAU A;  4V2Q A;  1Q92 A;  1GK3 A;  4C5U A;  2JAO A;  3GZH A;  1KQ7 A;  1EB4 A;  4MX2 A;  2HVG A;  3RD8 A;  1XL8 A;  5M0J A;  1XMC A;  1U15 A;  1B8F A;  1Z4K A;  2PFM A;  3CRV A;  5F92 A;  4CQ5 A;  2X75 A;  1Q5N A;  5HW2 A;  1C3U A;  2QVE A;  3NO9 A;  4APB A;  1DCN A;  1Z4J A;  2O7E A;  1GKM A;  3CZO A;  2YII A;  4YIH A;  1AUW A;  1K7W A;  5EYT A;  3UNV A;  5H8W A;  4FFX A;  1Y2M A;  1FUQ A;  1RE5 A;  4ADL A;  3OCF A;  4A15 A;  5M0I A;  4NFL A;  4EFC A;  1T6P A;  3NZ4 A;  1XWO A;  1TJ7 A;  3BHG A;  5F91 A;  1GKJ A;  3R6Y A;  4C5S A;  2FEN A;  2PTS A;  4WNL A;  2I7D A;  2O6Y A;  3KDZ A;  3CI0 K;  2OHY A;  1TJW A;  2D27 A;  1U0L A;  3BWV A;  2PTQ A;  3OCE A;  2E9F A;  2RJS A;  1I0A A;  3F4T A;  1Z4M A;  4HGV A;  1XL7 A;  4BAB A;  1YFM A;  4IQJ M;  2QGA B;  4E88 A;  2RJR A;  1HY1 A;  4MWO A;  3GTD A;  4APA A;  1TJV A; 
#chains in the Genus database with same CATH homology
 1JSW A;  1HY0 A;  3C8T A;  1GK2 A;  1DOF A;  4C5R A;  1U16 A;  4ADM A;  3QBP A;  4C6G A;  4V2R A;  1FUR A;  1K62 A;  3KDY A;  3E04 A;  5EYV A;  1TJU A;  3TV2 A;  2FUS A;  2O7B A;  2O7F A;  3R6Q A;  3R6V A;  4NSL A;  2J91 A;  1YIS A;  5D6B A;  1W27 A;  1C3C A;  2NYF A;  1FUO A;  4FLC A;  2O7D A;  1J3U A;  1YFE A;  2VD6 A;  2PTR A;  1FUP A;  4EEI A;  4NLE A;  3RRP A;  1T6J A;  4BAA A;  1VDK A;  2O78 A;  2NYN A;  4V2Q A;  1GK3 A;  4C5U A;  3GZH A;  1KQ7 A;  1EB4 A;  4MX2 A;  2HVG A;  3RD8 A;  1U15 A;  1B8F A;  2PFM A;  5F92 A;  4CQ5 A;  2X75 A;  1Q5N A;  5HW2 A;  1C3U A;  2QVE A;  3NO9 A;  4APB A;  1DCN A;  2O7E A;  1GKM A;  3CZO A;  2YII A;  1AUW A;  1K7W A;  5EYT A;  3UNV A;  4FFX A;  1Y2M A;  1FUQ A;  4ADL A;  1RE5 A;  3OCF A;  3NZ4 A;  4EFC A;  1T6P A;  1XWO A;  1TJ7 A;  3BHG A;  5F91 A;  1GKJ A;  3R6Y A;  4C5S A;  2PTS A;  2O6Y A;  3KDZ A;  2OHY A;  1TJW A;  2PTQ A;  3OCE A;  2E9F A;  2RJS A;  1I0A A;  4HGV A;  4BAB A;  1YFM A;  2QGA B;  2RJR A;  1HY1 A;  3GTD A;  4APA A;  1TJV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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