1HY0A

Crystal structure of wild type duck delta 1 crystallin (eye lens protein)
Total Genus 183
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
183
sequence length
447
structure length
447
Chain Sequence
DPIMQMLSTSISTEQRLSEVDIQASIAYAKALEKAGILTKTELEKILSGLEKISEELSKGVIVVTQSDEDIQTANERRLKELIGDIAGKLHTGRSRNEQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSVATLLLIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKSGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVIDVVDTLTAVLQVATGVISTLQISKENMEKALTPEMLATDLALYLVRKGMPFRQAHTASGKAVHLAETKGIAINNLTLEDLKSISPLFSSDVSQVFNFVNSVEQYTALGGTAKSSVTTQIEQLRELMKKQKE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
source organism Anas platyrhynchos
publication title Structural studies of duck delta 1 and delta 2 crystallin suggest conformational changes occur during catalysis.
pubmed doi rcsb
molecule keywords DELTA CRYSTALLIN I
total genus 183
structure length 447
sequence length 447
chains with identical sequence B
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 2001-01-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1hy0A03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1hy0A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1hy0A02
2PTQA 2O7FA 3NZ4A 5EYVA 2QVEA 3TV2A 1JSWA 4BAAA 4C6GA 1YFMA 1DOFA 3C8TA 3QBPA 1AUWA 1T6JA 2VD6A 4NSLA 2O7BA 3R6VA 2PTSA 2O78A 4ADLA 2X75A 3R6QA 1VDKA 1C3UA 3RRPA 2J91A 3CZOA 1FUOA 1HY1A 2NYFA 1GKJA 1FUPA 1B8FA 1C3CA 3GZHA 3NO9A 1XWOA 4C5UA 2O7EA 4MX2A 1DCNA 1FURA 1FUQA 3RD8A 1GKMA 1Q5NA 1TJ7A 1GK3A 1W27A 3R6YA 4EEIA 1K62A 1U16A 4BABA 4V2QA 1TJUA 1HY0A 1I0AA 3OCEA 1KQ7A 4HGVA 4C5RA 2YIIA 5F92A 1YISA 4APBA 4CQ5A 1U15A 2HVGA 3E04A 1TJWA 5HW2A 4C5SA 2PTRA 1Y2MA 3UNVA 4ADMA 3KDZA 5D6BA 5EYTA 2NYNA 3KDYA 4EFCA 4FLCA 4NLEA 1J3UA 2FUSA 4V2RA 2E9FA 3BHGA 4APAA 5F91A 2QGAB 1T6PA 2O7DA 1K7WA 2PFMA 1TJVA 2RJRA 1GK2A 4FFXA 2OHYA 2O6YA 1RE5A 2RJSA 3OCFA 1EB4A 3GTDA 1YFEA
chains in the Genus database with same CATH superfamily
2PTQA 1XL7A 2O7FA 3NZ4A 5EYVA 4A15A 2YV5A 1XMCA 2VSFA 4MWOA 2JAWA 2QVEA 3U19A 3TV2A 3U13A 4MUMA 1JSWA 4E88A 4BAAA 4C6GA 1YFMA 1DOFA 3C8TA 3QBPA 1Z4KA 1AUWA 1XLYA 1T6JA 2VD6A 4NSLA 2O7BA 4WNLA 3BWVA 3R6VA 2PTSA 2O78A 4ADLA 2X75A 3R6QA 4YIHA 1VDKA 1C3UA 3RRPA 2J91A 3CZOA 1FUOA 1HY1A 2NYFA 1GKJA 4L6AA 4NFLA 4L6CA 1FUPA 2VL7A 1B8FA 1C3CA 3GZHA 3NO9A 1XWOA 2RCNA 4L57A 1XL8A 4C5UA 2O7EA 4MX2A 5M0IA 1DCNA 1T9HA 3CI0K 1FURA 1FUQA 3RD8A 2FELA 1GKMA 1XMDA 1MH9A 1Z4LA 1Q5NA 1TJ7A 1GK3A 1W27A 1U0LA 3R6YA 4EEIA 1K62A 1U16A 1Q92A 2D27A 4BABA 4V2QA 1TJUA 1HY0A 1IW7D 5M0JA 1I0AA 3OCEA 2FENA 1KQ7A 4HGVA 4C5RA 2YIIA 5F92A 1YISA 4APBA 4YIKA 4CQ5A 1U15A 1Z4IA 1Z4PX 2HVGA 3E04A 2JARA 1TJWA 3F4SA 1Z4MA 5HW2A 4C5SA 2PTRA 1Z4QA 3F4RA 1Y2MA 3UNVA 4ADMA 3KDZA 1Q91A 4IQJM 5D6BA 5EYTA 2NYNA 3KDYA 4EFCA 4FLCA 4NLEA 1J3UA 2FUSA 1YFEA 4V2RA 2E9FA 3F4TA 3CRVA 3BHGA 4APAA 5F91A 2QGAB 1T6PA 2O7DA 1K7WA 2JAUA 2I7DA 2PFMA 1TJVA 2RJRA 2JAOA 1GK2A 5H8WA 4FFXA 2OHYA 2O6YA 3CRW1 1RE5A 2RJSA 1Z4JA 3OCFA 1EB4A 3GTDA 2D28C
chains in the Genus database with same CATH topology
2PTQA 2O7FA 3NZ4A 5EYVA 2QVEA 3TV2A 1JSWA 4BAAA 4C6GA 1YFMA 1DOFA 3C8TA 3QBPA 1AUWA 1T6JA 2VD6A 4NSLA 2O7BA 3R6VA 2PTSA 2O78A 4ADLA 2X75A 3R6QA 1VDKA 1C3UA 3RRPA 2J91A 3CZOA 1FUOA 1HY1A 2NYFA 1GKJA 1FUPA 1B8FA 1C3CA 3GZHA 3NO9A 1XWOA 4C5UA 2O7EA 4MX2A 1DCNA 1FURA 1FUQA 3RD8A 1GKMA 1Q5NA 1TJ7A 1GK3A 1W27A 3R6YA 4EEIA 1K62A 1U16A 4BABA 4V2QA 1TJUA 1HY0A 1I0AA 3OCEA 1KQ7A 4HGVA 4C5RA 2YIIA 5F92A 1YISA 4APBA 4CQ5A 1U15A 2HVGA 3E04A 1TJWA 5HW2A 4C5SA 2PTRA 1Y2MA 3UNVA 4ADMA 3KDZA 5D6BA 5EYTA 2NYNA 3KDYA 4EFCA 4FLCA 4NLEA 1J3UA 2FUSA 4V2RA 2E9FA 3BHGA 4APAA 5F91A 2QGAB 1T6PA 2O7DA 1K7WA 2PFMA 1TJVA 2RJRA 1GK2A 4FFXA 2OHYA 2O6YA 1RE5A 2RJSA 3OCFA 1EB4A 3GTDA 1YFEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PTQ A;  2O7F A;  3NZ4 A;  5EYV A;  2QVE A;  3TV2 A;  1JSW A;  4BAA A;  4C6G A;  1YFM A;  1DOF A;  3C8T A;  3QBP A;  1AUW A;  1T6J A;  2VD6 A;  4NSL A;  2O7B A;  3R6V A;  2PTS A;  2O78 A;  4ADL A;  2X75 A;  3R6Q A;  1VDK A;  1C3U A;  3RRP A;  2J91 A;  3CZO A;  1FUO A;  1HY1 A;  2NYF A;  1GKJ A;  1FUP A;  1B8F A;  1C3C A;  3GZH A;  3NO9 A;  1XWO A;  4C5U A;  2O7E A;  4MX2 A;  1DCN A;  1FUR A;  1FUQ A;  3RD8 A;  1GKM A;  1Q5N A;  1TJ7 A;  1GK3 A;  1W27 A;  3R6Y A;  4EEI A;  1K62 A;  1U16 A;  4BAB A;  4V2Q A;  1TJU A;  1HY0 A;  1I0A A;  3OCE A;  1KQ7 A;  4HGV A;  4C5R A;  2YII A;  5F92 A;  1YIS A;  4APB A;  4CQ5 A;  1U15 A;  2HVG A;  3E04 A;  1TJW A;  5HW2 A;  4C5S A;  2PTR A;  1Y2M A;  3UNV A;  4ADM A;  3KDZ A;  5D6B A;  5EYT A;  2NYN A;  3KDY A;  4EFC A;  4FLC A;  4NLE A;  1J3U A;  2FUS A;  4V2R A;  2E9F A;  3BHG A;  4APA A;  5F91 A;  2QGA B;  1T6P A;  2O7D A;  1K7W A;  2PFM A;  1TJV A;  2RJR A;  1GK2 A;  4FFX A;  2OHY A;  2O6Y A;  1RE5 A;  2RJS A;  3OCF A;  1EB4 A;  3GTD A;  1YFE A; 
#chains in the Genus database with same CATH topology
 2PTQ A;  1XL7 A;  2O7F A;  3NZ4 A;  5EYV A;  4A15 A;  2YV5 A;  1XMC A;  2VSF A;  4MWO A;  2JAW A;  2QVE A;  3U19 A;  3TV2 A;  3U13 A;  4MUM A;  1JSW A;  4E88 A;  4BAA A;  4C6G A;  1YFM A;  1DOF A;  3C8T A;  3QBP A;  1Z4K A;  1AUW A;  1XLY A;  1T6J A;  2VD6 A;  4NSL A;  2O7B A;  4WNL A;  3BWV A;  3R6V A;  2PTS A;  2O78 A;  4ADL A;  2X75 A;  3R6Q A;  4YIH A;  1VDK A;  1C3U A;  3RRP A;  2J91 A;  3CZO A;  1FUO A;  1HY1 A;  2NYF A;  1GKJ A;  4L6A A;  4NFL A;  4L6C A;  1FUP A;  2VL7 A;  1B8F A;  1C3C A;  3GZH A;  3NO9 A;  1XWO A;  2RCN A;  4L57 A;  1XL8 A;  4C5U A;  2O7E A;  4MX2 A;  5M0I A;  1DCN A;  1T9H A;  3CI0 K;  1FUR A;  1FUQ A;  3RD8 A;  2FEL A;  1GKM A;  1XMD A;  1MH9 A;  1Z4L A;  1Q5N A;  1TJ7 A;  1GK3 A;  1W27 A;  1U0L A;  3R6Y A;  4EEI A;  1K62 A;  1U16 A;  1Q92 A;  2D27 A;  4BAB A;  4V2Q A;  1TJU A;  1HY0 A;  1IW7 D;  5M0J A;  1I0A A;  3OCE A;  2FEN A;  1KQ7 A;  4HGV A;  4C5R A;  2YII A;  5F92 A;  1YIS A;  4APB A;  4YIK A;  4CQ5 A;  1U15 A;  1Z4I A;  1Z4P X;  2HVG A;  3E04 A;  2JAR A;  1TJW A;  3F4S A;  1Z4M A;  5HW2 A;  4C5S A;  2PTR A;  1Z4Q A;  3F4R A;  1Y2M A;  3UNV A;  4ADM A;  3KDZ A;  1Q91 A;  4IQJ M;  5D6B A;  5EYT A;  2NYN A;  3KDY A;  4EFC A;  4FLC A;  4NLE A;  1J3U A;  2FUS A;  1YFE A;  4V2R A;  2E9F A;  3F4T A;  3CRV A;  3BHG A;  4APA A;  5F91 A;  2QGA B;  1T6P A;  2O7D A;  1K7W A;  2JAU A;  2I7D A;  2PFM A;  1TJV A;  2RJR A;  2JAO A;  1GK2 A;  5H8W A;  4FFX A;  2OHY A;  2O6Y A;  3CRW 1;  1RE5 A;  2RJS A;  1Z4J A;  3OCF A;  1EB4 A;  3GTD A;  2D28 C; 
#chains in the Genus database with same CATH homology
 2PTQ A;  2O7F A;  3NZ4 A;  5EYV A;  2QVE A;  3TV2 A;  1JSW A;  4BAA A;  4C6G A;  1YFM A;  1DOF A;  3C8T A;  3QBP A;  1AUW A;  1T6J A;  2VD6 A;  4NSL A;  2O7B A;  3R6V A;  2PTS A;  2O78 A;  4ADL A;  2X75 A;  3R6Q A;  1VDK A;  1C3U A;  3RRP A;  2J91 A;  3CZO A;  1FUO A;  1HY1 A;  2NYF A;  1GKJ A;  1FUP A;  1B8F A;  1C3C A;  3GZH A;  3NO9 A;  1XWO A;  4C5U A;  2O7E A;  4MX2 A;  1DCN A;  1FUR A;  1FUQ A;  3RD8 A;  1GKM A;  1Q5N A;  1TJ7 A;  1GK3 A;  1W27 A;  3R6Y A;  4EEI A;  1K62 A;  1U16 A;  4BAB A;  4V2Q A;  1TJU A;  1HY0 A;  1I0A A;  3OCE A;  1KQ7 A;  4HGV A;  4C5R A;  2YII A;  5F92 A;  1YIS A;  4APB A;  4CQ5 A;  1U15 A;  2HVG A;  3E04 A;  1TJW A;  5HW2 A;  4C5S A;  2PTR A;  1Y2M A;  3UNV A;  4ADM A;  3KDZ A;  5D6B A;  5EYT A;  2NYN A;  3KDY A;  4EFC A;  4FLC A;  4NLE A;  1J3U A;  2FUS A;  4V2R A;  2E9F A;  3BHG A;  4APA A;  5F91 A;  2QGA B;  1T6P A;  2O7D A;  1K7W A;  2PFM A;  1TJV A;  2RJR A;  1GK2 A;  4FFX A;  2OHY A;  2O6Y A;  1RE5 A;  2RJS A;  3OCF A;  1EB4 A;  3GTD A;  1YFE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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