1HY0A

Crystal structure of wild type duck delta 1 crystallin (eye lens protein)
Total Genus 183
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
183
sequence length
447
structure length
447
Chain Sequence
b'DPIMQMLSTSISTEQRLSEVDIQASIAYAKALEKAGILTKTELEKILSGLEKISEELSKGVIVVTQSDEDIQTANERRLKELIGDIAGKLHTGRSRNEQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSVATLLLIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKSGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVIDVVDTLTAVLQVATGVISTLQISKENMEKALTPEMLATDLALYLVRKGMPFRQAHTASGKAVHLAETKGIAINNLTLEDLKSISPLFSSDVSQVFNFVNSVEQYTALGGTAKSSVTTQIEQLRELMKKQKE'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords DELTA CRYSTALLIN I
publication title Structural studies of duck delta 1 and delta 2 crystallin suggest conformational changes occur during catalysis.
pubmed doi rcsb
source organism Anas platyrhynchos
molecule tags Lyase
total genus 183
structure length 447
sequence length 447
chains with identical sequence B
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 2001-01-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1hy0A03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1hy0A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1hy0A02
1RE5A 4APAA 4V2QA 2O7BA 4NSLA 3C8TA 1DOFA 1C3CA 2QGAB 3RD8A 2NYNA 1Q5NA 2O7FA 1GKJA 4FFXA 2J91A 2NYFA 1U15A 3CZOA 5F91A 2PFMA 3GZHA 3OCEA 2VD6A 4BABA 1FURA 2HVGA 1J3UA 5D6BA 1T6PA 1K62A 1GKMA 1U16A 2E9FA 3BHGA 1TJWA 1Y2MA 2PTSA 1FUPA 2O7DA 4APBA 4CQ5A 4ADMA 1FUOA 1TJVA 4EFCA 1DCNA 1VDKA 4C5UA 2O6YA 1GK3A 1KQ7A 1HY1A 3GTDA 4EEIA 1YFEA 3QBPA 1K7WA 1HY0A 1FUQA 4HGVA 2FUSA 3E04A 5HW2A 1T6JA 3KDYA 4C5SA 4NLEA 4ADLA 1B8FA 4C6GA 2QVEA 5F92A 1TJ7A 1W27A 1JSWA 3RRPA 4C5RA 2OHYA 3NZ4A 2RJSA 3R6YA 1YISA 2O7EA 3OCFA 3NO9A 3KDZA 3UNVA 2YIIA 3R6QA 1YFMA 2X75A 3R6VA 4V2RA 2RJRA 1AUWA 1EB4A 5EYVA 5EYTA 1I0AA 2PTRA 4BAAA 1GK2A 1TJUA 1XWOA 3TV2A 2O78A 4FLCA 4MX2A 1C3UA 2PTQA
chains in the Genus database with same CATH superfamily
1RE5A 4APAA 1Z4MA 4V2QA 1MH9A 2O7BA 4NSLA 4YIKA 3C8TA 1DOFA 1C3CA 2QGAB 3RD8A 3BWVA 2NYNA 1Q5NA 1Z4KA 3U19A 2O7FA 3U13A 1GKJA 2FELA 4FFXA 2J91A 2RCNA 1IW7D 4L6AA 2NYFA 2VSFA 1U15A 3CZOA 5F91A 2PFMA 3GZHA 1T9HA 3OCEA 2JAUA 2VD6A 4BABA 2JAOA 1XMDA 1FURA 2HVGA 1J3UA 2JAWA 5D6BA 1T6PA 1K62A 1XL7A 5M0JA 1GKMA 1U16A 5M0IA 1XL8A 2E9FA 3BHGA 1TJWA 1Y2MA 1Z4LA 2PTSA 1FUPA 2O7DA 4APBA 4CQ5A 4ADMA 1FUOA 1TJVA 1Z4JA 1DCNA 2YV5A 4EFCA 1VDKA 4C5UA 2O6YA 1XLYA 4E88A 1GK3A 1KQ7A 1HY1A 4IQJM 2D28C 3GTDA 4EEIA 1YFEA 1Z4PX 3QBPA 1K7WA 1XMCA 3F4SA 1HY0A 1Z4IA 3CRW1 1FUQA 4HGVA 2FUSA 3E04A 5HW2A 1T6JA 3KDYA 4C5SA 4NLEA 2FENA 4ADLA 1B8FA 4C6GA 2QVEA 5F92A 4MWOA 1TJ7A 5H8WA 2D27A 1W27A 4MUMA 1JSWA 3RRPA 4C5RA 2OHYA 3NZ4A 4WNLA 1U0LA 2RJSA 2JARA 2I7DA 3R6YA 1YISA 2O7EA 3OCFA 3NO9A 2VL7A 3KDZA 3UNVA 1Z4QA 3F4TA 2YIIA 3CI0K 3F4RA 3R6QA 1YFMA 1Q92A 1Q91A 2X75A 3R6VA 3CRVA 4V2RA 2RJRA 1AUWA 1EB4A 5EYVA 4L57A 5EYTA 1I0AA 2PTRA 4BAAA 1GK2A 4L6CA 4A15A 1TJUA 1XWOA 3TV2A 2O78A 4FLCA 4MX2A 4YIHA 1C3UA 2PTQA 4NFLA
chains in the Genus database with same CATH topology
1RE5A 4APAA 4V2QA 2O7BA 4NSLA 3C8TA 1DOFA 1C3CA 2QGAB 3RD8A 2NYNA 1Q5NA 2O7FA 1GKJA 4FFXA 2J91A 2NYFA 1U15A 3CZOA 5F91A 2PFMA 3GZHA 3OCEA 2VD6A 4BABA 1FURA 2HVGA 1J3UA 5D6BA 1T6PA 1K62A 1GKMA 1U16A 2E9FA 3BHGA 1TJWA 1Y2MA 2PTSA 1FUPA 2O7DA 4APBA 4CQ5A 4ADMA 1FUOA 1TJVA 4EFCA 1DCNA 1VDKA 4C5UA 2O6YA 1GK3A 1KQ7A 1HY1A 3GTDA 4EEIA 1YFEA 3QBPA 1K7WA 1HY0A 1FUQA 4HGVA 2FUSA 3E04A 5HW2A 1T6JA 3KDYA 4C5SA 4NLEA 4ADLA 1B8FA 4C6GA 2QVEA 5F92A 1TJ7A 1W27A 1JSWA 3RRPA 4C5RA 2OHYA 3NZ4A 2RJSA 3R6YA 1YISA 2O7EA 3OCFA 3NO9A 3KDZA 3UNVA 2YIIA 3R6QA 1YFMA 2X75A 3R6VA 4V2RA 2RJRA 1AUWA 1EB4A 5EYVA 5EYTA 1I0AA 2PTRA 4BAAA 1GK2A 1TJUA 1XWOA 3TV2A 2O78A 4FLCA 4MX2A 1C3UA 2PTQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RE5 A;  4APA A;  4V2Q A;  2O7B A;  4NSL A;  3C8T A;  1DOF A;  1C3C A;  2QGA B;  3RD8 A;  2NYN A;  1Q5N A;  2O7F A;  1GKJ A;  4FFX A;  2J91 A;  2NYF A;  1U15 A;  3CZO A;  5F91 A;  2PFM A;  3GZH A;  3OCE A;  2VD6 A;  4BAB A;  1FUR A;  2HVG A;  1J3U A;  5D6B A;  1T6P A;  1K62 A;  1GKM A;  1U16 A;  2E9F A;  3BHG A;  1TJW A;  1Y2M A;  2PTS A;  1FUP A;  2O7D A;  4APB A;  4CQ5 A;  4ADM A;  1FUO A;  1TJV A;  4EFC A;  1DCN A;  1VDK A;  4C5U A;  2O6Y A;  1GK3 A;  1KQ7 A;  1HY1 A;  3GTD A;  4EEI A;  1YFE A;  3QBP A;  1K7W A;  1HY0 A;  1FUQ A;  4HGV A;  2FUS A;  3E04 A;  5HW2 A;  1T6J A;  3KDY A;  4C5S A;  4NLE A;  4ADL A;  1B8F A;  4C6G A;  2QVE A;  5F92 A;  1TJ7 A;  1W27 A;  1JSW A;  3RRP A;  4C5R A;  2OHY A;  3NZ4 A;  2RJS A;  3R6Y A;  1YIS A;  2O7E A;  3OCF A;  3NO9 A;  3KDZ A;  3UNV A;  2YII A;  3R6Q A;  1YFM A;  2X75 A;  3R6V A;  4V2R A;  2RJR A;  1AUW A;  1EB4 A;  5EYV A;  5EYT A;  1I0A A;  2PTR A;  4BAA A;  1GK2 A;  1TJU A;  1XWO A;  3TV2 A;  2O78 A;  4FLC A;  4MX2 A;  1C3U A;  2PTQ A; 
#chains in the Genus database with same CATH topology
 1RE5 A;  4APA A;  1Z4M A;  4V2Q A;  1MH9 A;  2O7B A;  4NSL A;  4YIK A;  3C8T A;  1DOF A;  1C3C A;  2QGA B;  3RD8 A;  3BWV A;  2NYN A;  1Q5N A;  1Z4K A;  3U19 A;  2O7F A;  3U13 A;  1GKJ A;  2FEL A;  4FFX A;  2J91 A;  2RCN A;  1IW7 D;  4L6A A;  2NYF A;  2VSF A;  1U15 A;  3CZO A;  5F91 A;  2PFM A;  3GZH A;  1T9H A;  3OCE A;  2JAU A;  2VD6 A;  4BAB A;  2JAO A;  1XMD A;  1FUR A;  2HVG A;  1J3U A;  2JAW A;  5D6B A;  1T6P A;  1K62 A;  1XL7 A;  5M0J A;  1GKM A;  1U16 A;  5M0I A;  1XL8 A;  2E9F A;  3BHG A;  1TJW A;  1Y2M A;  1Z4L A;  2PTS A;  1FUP A;  2O7D A;  4APB A;  4CQ5 A;  4ADM A;  1FUO A;  1TJV A;  1Z4J A;  1DCN A;  2YV5 A;  4EFC A;  1VDK A;  4C5U A;  2O6Y A;  1XLY A;  4E88 A;  1GK3 A;  1KQ7 A;  1HY1 A;  4IQJ M;  2D28 C;  3GTD A;  4EEI A;  1YFE A;  1Z4P X;  3QBP A;  1K7W A;  1XMC A;  3F4S A;  1HY0 A;  1Z4I A;  3CRW 1;  1FUQ A;  4HGV A;  2FUS A;  3E04 A;  5HW2 A;  1T6J A;  3KDY A;  4C5S A;  4NLE A;  2FEN A;  4ADL A;  1B8F A;  4C6G A;  2QVE A;  5F92 A;  4MWO A;  1TJ7 A;  5H8W A;  2D27 A;  1W27 A;  4MUM A;  1JSW A;  3RRP A;  4C5R A;  2OHY A;  3NZ4 A;  4WNL A;  1U0L A;  2RJS A;  2JAR A;  2I7D A;  3R6Y A;  1YIS A;  2O7E A;  3OCF A;  3NO9 A;  2VL7 A;  3KDZ A;  3UNV A;  1Z4Q A;  3F4T A;  2YII A;  3CI0 K;  3F4R A;  3R6Q A;  1YFM A;  1Q92 A;  1Q91 A;  2X75 A;  3R6V A;  3CRV A;  4V2R A;  2RJR A;  1AUW A;  1EB4 A;  5EYV A;  4L57 A;  5EYT A;  1I0A A;  2PTR A;  4BAA A;  1GK2 A;  4L6C A;  4A15 A;  1TJU A;  1XWO A;  3TV2 A;  2O78 A;  4FLC A;  4MX2 A;  4YIH A;  1C3U A;  2PTQ A;  4NFL A; 
#chains in the Genus database with same CATH homology
 1RE5 A;  4APA A;  4V2Q A;  2O7B A;  4NSL A;  3C8T A;  1DOF A;  1C3C A;  2QGA B;  3RD8 A;  2NYN A;  1Q5N A;  2O7F A;  1GKJ A;  4FFX A;  2J91 A;  2NYF A;  1U15 A;  3CZO A;  5F91 A;  2PFM A;  3GZH A;  3OCE A;  2VD6 A;  4BAB A;  1FUR A;  2HVG A;  1J3U A;  5D6B A;  1T6P A;  1K62 A;  1GKM A;  1U16 A;  2E9F A;  3BHG A;  1TJW A;  1Y2M A;  2PTS A;  1FUP A;  2O7D A;  4APB A;  4CQ5 A;  4ADM A;  1FUO A;  1TJV A;  4EFC A;  1DCN A;  1VDK A;  4C5U A;  2O6Y A;  1GK3 A;  1KQ7 A;  1HY1 A;  3GTD A;  4EEI A;  1YFE A;  3QBP A;  1K7W A;  1HY0 A;  1FUQ A;  4HGV A;  2FUS A;  3E04 A;  5HW2 A;  1T6J A;  3KDY A;  4C5S A;  4NLE A;  4ADL A;  1B8F A;  4C6G A;  2QVE A;  5F92 A;  1TJ7 A;  1W27 A;  1JSW A;  3RRP A;  4C5R A;  2OHY A;  3NZ4 A;  2RJS A;  3R6Y A;  1YIS A;  2O7E A;  3OCF A;  3NO9 A;  3KDZ A;  3UNV A;  2YII A;  3R6Q A;  1YFM A;  2X75 A;  3R6V A;  4V2R A;  2RJR A;  1AUW A;  1EB4 A;  5EYV A;  5EYT A;  1I0A A;  2PTR A;  4BAA A;  1GK2 A;  1TJU A;  1XWO A;  3TV2 A;  2O78 A;  4FLC A;  4MX2 A;  1C3U A;  2PTQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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