1HY0A

Crystal structure of wild type duck delta 1 crystallin (eye lens protein)
Total Genus 183
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
183
sequence length
447
structure length
447
Chain Sequence
DPIMQMLSTSISTEQRLSEVDIQASIAYAKALEKAGILTKTELEKILSGLEKISEELSKGVIVVTQSDEDIQTANERRLKELIGDIAGKLHTGRSRNEQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSVATLLLIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKSGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVIDVVDTLTAVLQVATGVISTLQISKENMEKALTPEMLATDLALYLVRKGMPFRQAHTASGKAVHLAETKGIAINNLTLEDLKSISPLFSSDVSQVFNFVNSVEQYTALGGTAKSSVTTQIEQLRELMKKQKE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural studies of duck delta 1 and delta 2 crystallin suggest conformational changes occur during catalysis.
pubmed doi rcsb
source organism Anas platyrhynchos
molecule tags Lyase
molecule keywords DELTA CRYSTALLIN I
total genus 183
structure length 447
sequence length 447
chains with identical sequence B
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 2001-01-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1hy0A03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1hy0A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1hy0A02
1K7WA 3R6QA 2NYNA 1U15A 2QGAB 1W27A 2QVEA 3NZ4A 2RJRA 5F91A 3R6YA 4CQ5A 5EYVA 1FURA 3RRPA 2NYFA 4BAAA 1Y2MA 3KDYA 4ADLA 3OCFA 5D6BA 2OHYA 3NO9A 1T6PA 4NSLA 4APAA 4FLCA 4MX2A 2YIIA 4APBA 3QBPA 1FUOA 4FFXA 2FUSA 2PTSA 1K62A 1J3UA 2O7FA 5HW2A 1GKMA 3GZHA 4C5UA 1DCNA 2E9FA 1C3CA 1FUQA 4EEIA 1TJ7A 1JSWA 4V2QA 4C5RA 1HY1A 3CZOA 2O78A 4EFCA 4ADMA 3BHGA 1U16A 4C6GA 1I0AA 2PFMA 3C8TA 5F92A 3TV2A 2PTQA 4V2RA 2RJSA 2O6YA 3OCEA 4C5SA 2O7DA 2O7EA 1EB4A 1GKJA 1KQ7A 1TJVA 1RE5A 2X75A 1C3UA 3GTDA 1DOFA 1T6JA 2O7BA 2HVGA 1GK3A 3E04A 1FUPA 1TJWA 1AUWA 1YFMA 4NLEA 1YISA 1HY0A 3RD8A 2J91A 3UNVA 5EYTA 3R6VA 3KDZA 1VDKA 4BABA 2VD6A 1B8FA 1YFEA 1TJUA 4HGVA 2PTRA 1GK2A 1Q5NA 1XWOA
chains in the Genus database with same CATH superfamily
1K7WA 1IW7D 3F4TA 3R6QA 2NYNA 1U15A 1T9HA 2QGAB 1W27A 4WNLA 2VSFA 2QVEA 3NZ4A 4A15A 2RJRA 1MH9A 4E88A 5F91A 2JAOA 3R6YA 4CQ5A 1XL7A 2D28C 5EYVA 1FURA 3RRPA 2NYFA 4BAAA 5M0JA 1Z4PX 1Y2MA 3KDYA 4ADLA 3CRVA 3OCFA 5D6BA 2OHYA 3NO9A 1T6PA 4YIHA 4NSLA 4APAA 4FLCA 4L6AA 3F4SA 4MX2A 3CI0K 2YIIA 4APBA 2RCNA 3QBPA 1FUOA 4NFLA 4FFXA 2FUSA 2PTSA 1K62A 1Z4LA 4YIKA 1J3UA 2O7FA 5HW2A 1GKMA 1U0LA 4MUMA 3GZHA 4C5UA 1XMDA 1DCNA 2E9FA 1C3CA 1Z4JA 1FUQA 4EEIA 4MWOA 1Z4IA 1TJ7A 1JSWA 4V2QA 4C5RA 4IQJM 1HY1A 3CZOA 2O78A 1Q91A 4L57A 4EFCA 4ADMA 3BHGA 3CRW1 1XL8A 1U16A 1Q92A 4C6GA 1I0AA 2PFMA 3C8TA 4L6CA 5F92A 1XMCA 3TV2A 2VL7A 2PTQA 4V2RA 2RJSA 1Z4MA 2O6YA 3OCEA 3U13A 4C5SA 2O7DA 2O7EA 1EB4A 2JAWA 1GKJA 2FELA 1KQ7A 1TJVA 1RE5A 2X75A 3BWVA 1C3UA 3GTDA 1DOFA 1XLYA 1T6JA 2O7BA 2HVGA 2JARA 3E04A 1GK3A 1FUPA 1TJWA 2YV5A 1AUWA 5M0IA 1YFMA 4NLEA 3U19A 1YISA 1HY0A 2JAUA 2D27A 3RD8A 3F4RA 2J91A 1Z4QA 3UNVA 5H8WA 5EYTA 3R6VA 3KDZA 1VDKA 4BABA 2VD6A 1B8FA 1Z4KA 1YFEA 1TJUA 4HGVA 2FENA 2PTRA 1GK2A 1Q5NA 1XWOA 2I7DA
chains in the Genus database with same CATH topology
1K7WA 3R6QA 2NYNA 1U15A 2QGAB 1W27A 2QVEA 3NZ4A 2RJRA 5F91A 3R6YA 4CQ5A 5EYVA 1FURA 3RRPA 2NYFA 4BAAA 1Y2MA 3KDYA 4ADLA 3OCFA 5D6BA 2OHYA 3NO9A 1T6PA 4NSLA 4APAA 4FLCA 4MX2A 2YIIA 4APBA 3QBPA 1FUOA 4FFXA 2FUSA 2PTSA 1K62A 1J3UA 2O7FA 5HW2A 1GKMA 3GZHA 4C5UA 1DCNA 2E9FA 1C3CA 1FUQA 4EEIA 1TJ7A 1JSWA 4V2QA 4C5RA 1HY1A 3CZOA 2O78A 4EFCA 4ADMA 3BHGA 1U16A 4C6GA 1I0AA 2PFMA 3C8TA 5F92A 3TV2A 2PTQA 4V2RA 2RJSA 2O6YA 3OCEA 4C5SA 2O7DA 2O7EA 1EB4A 1GKJA 1KQ7A 1TJVA 1RE5A 2X75A 1C3UA 3GTDA 1DOFA 1T6JA 2O7BA 2HVGA 1GK3A 3E04A 1FUPA 1TJWA 1AUWA 1YFMA 4NLEA 1YISA 1HY0A 3RD8A 2J91A 3UNVA 5EYTA 3R6VA 3KDZA 1VDKA 4BABA 2VD6A 1B8FA 1YFEA 1TJUA 4HGVA 2PTRA 1GK2A 1Q5NA 1XWOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K7W A;  3R6Q A;  2NYN A;  1U15 A;  2QGA B;  1W27 A;  2QVE A;  3NZ4 A;  2RJR A;  5F91 A;  3R6Y A;  4CQ5 A;  5EYV A;  1FUR A;  3RRP A;  2NYF A;  4BAA A;  1Y2M A;  3KDY A;  4ADL A;  3OCF A;  5D6B A;  2OHY A;  3NO9 A;  1T6P A;  4NSL A;  4APA A;  4FLC A;  4MX2 A;  2YII A;  4APB A;  3QBP A;  1FUO A;  4FFX A;  2FUS A;  2PTS A;  1K62 A;  1J3U A;  2O7F A;  5HW2 A;  1GKM A;  3GZH A;  4C5U A;  1DCN A;  2E9F A;  1C3C A;  1FUQ A;  4EEI A;  1TJ7 A;  1JSW A;  4V2Q A;  4C5R A;  1HY1 A;  3CZO A;  2O78 A;  4EFC A;  4ADM A;  3BHG A;  1U16 A;  4C6G A;  1I0A A;  2PFM A;  3C8T A;  5F92 A;  3TV2 A;  2PTQ A;  4V2R A;  2RJS A;  2O6Y A;  3OCE A;  4C5S A;  2O7D A;  2O7E A;  1EB4 A;  1GKJ A;  1KQ7 A;  1TJV A;  1RE5 A;  2X75 A;  1C3U A;  3GTD A;  1DOF A;  1T6J A;  2O7B A;  2HVG A;  1GK3 A;  3E04 A;  1FUP A;  1TJW A;  1AUW A;  1YFM A;  4NLE A;  1YIS A;  1HY0 A;  3RD8 A;  2J91 A;  3UNV A;  5EYT A;  3R6V A;  3KDZ A;  1VDK A;  4BAB A;  2VD6 A;  1B8F A;  1YFE A;  1TJU A;  4HGV A;  2PTR A;  1GK2 A;  1Q5N A;  1XWO A; 
#chains in the Genus database with same CATH topology
 1K7W A;  1IW7 D;  3F4T A;  3R6Q A;  2NYN A;  1U15 A;  1T9H A;  2QGA B;  1W27 A;  4WNL A;  2VSF A;  2QVE A;  3NZ4 A;  4A15 A;  2RJR A;  1MH9 A;  4E88 A;  5F91 A;  2JAO A;  3R6Y A;  4CQ5 A;  1XL7 A;  2D28 C;  5EYV A;  1FUR A;  3RRP A;  2NYF A;  4BAA A;  5M0J A;  1Z4P X;  1Y2M A;  3KDY A;  4ADL A;  3CRV A;  3OCF A;  5D6B A;  2OHY A;  3NO9 A;  1T6P A;  4YIH A;  4NSL A;  4APA A;  4FLC A;  4L6A A;  3F4S A;  4MX2 A;  3CI0 K;  2YII A;  4APB A;  2RCN A;  3QBP A;  1FUO A;  4NFL A;  4FFX A;  2FUS A;  2PTS A;  1K62 A;  1Z4L A;  4YIK A;  1J3U A;  2O7F A;  5HW2 A;  1GKM A;  1U0L A;  4MUM A;  3GZH A;  4C5U A;  1XMD A;  1DCN A;  2E9F A;  1C3C A;  1Z4J A;  1FUQ A;  4EEI A;  4MWO A;  1Z4I A;  1TJ7 A;  1JSW A;  4V2Q A;  4C5R A;  4IQJ M;  1HY1 A;  3CZO A;  2O78 A;  1Q91 A;  4L57 A;  4EFC A;  4ADM A;  3BHG A;  3CRW 1;  1XL8 A;  1U16 A;  1Q92 A;  4C6G A;  1I0A A;  2PFM A;  3C8T A;  4L6C A;  5F92 A;  1XMC A;  3TV2 A;  2VL7 A;  2PTQ A;  4V2R A;  2RJS A;  1Z4M A;  2O6Y A;  3OCE A;  3U13 A;  4C5S A;  2O7D A;  2O7E A;  1EB4 A;  2JAW A;  1GKJ A;  2FEL A;  1KQ7 A;  1TJV A;  1RE5 A;  2X75 A;  3BWV A;  1C3U A;  3GTD A;  1DOF A;  1XLY A;  1T6J A;  2O7B A;  2HVG A;  2JAR A;  3E04 A;  1GK3 A;  1FUP A;  1TJW A;  2YV5 A;  1AUW A;  5M0I A;  1YFM A;  4NLE A;  3U19 A;  1YIS A;  1HY0 A;  2JAU A;  2D27 A;  3RD8 A;  3F4R A;  2J91 A;  1Z4Q A;  3UNV A;  5H8W A;  5EYT A;  3R6V A;  3KDZ A;  1VDK A;  4BAB A;  2VD6 A;  1B8F A;  1Z4K A;  1YFE A;  1TJU A;  4HGV A;  2FEN A;  2PTR A;  1GK2 A;  1Q5N A;  1XWO A;  2I7D A; 
#chains in the Genus database with same CATH homology
 1K7W A;  3R6Q A;  2NYN A;  1U15 A;  2QGA B;  1W27 A;  2QVE A;  3NZ4 A;  2RJR A;  5F91 A;  3R6Y A;  4CQ5 A;  5EYV A;  1FUR A;  3RRP A;  2NYF A;  4BAA A;  1Y2M A;  3KDY A;  4ADL A;  3OCF A;  5D6B A;  2OHY A;  3NO9 A;  1T6P A;  4NSL A;  4APA A;  4FLC A;  4MX2 A;  2YII A;  4APB A;  3QBP A;  1FUO A;  4FFX A;  2FUS A;  2PTS A;  1K62 A;  1J3U A;  2O7F A;  5HW2 A;  1GKM A;  3GZH A;  4C5U A;  1DCN A;  2E9F A;  1C3C A;  1FUQ A;  4EEI A;  1TJ7 A;  1JSW A;  4V2Q A;  4C5R A;  1HY1 A;  3CZO A;  2O78 A;  4EFC A;  4ADM A;  3BHG A;  1U16 A;  4C6G A;  1I0A A;  2PFM A;  3C8T A;  5F92 A;  3TV2 A;  2PTQ A;  4V2R A;  2RJS A;  2O6Y A;  3OCE A;  4C5S A;  2O7D A;  2O7E A;  1EB4 A;  1GKJ A;  1KQ7 A;  1TJV A;  1RE5 A;  2X75 A;  1C3U A;  3GTD A;  1DOF A;  1T6J A;  2O7B A;  2HVG A;  1GK3 A;  3E04 A;  1FUP A;  1TJW A;  1AUW A;  1YFM A;  4NLE A;  1YIS A;  1HY0 A;  3RD8 A;  2J91 A;  3UNV A;  5EYT A;  3R6V A;  3KDZ A;  1VDK A;  4BAB A;  2VD6 A;  1B8F A;  1YFE A;  1TJU A;  4HGV A;  2PTR A;  1GK2 A;  1Q5N A;  1XWO A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...