1HY0A

Crystal structure of wild type duck delta 1 crystallin (eye lens protein)
Total Genus 183
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
183
sequence length
447
structure length
447
Chain Sequence
DPIMQMLSTSISTEQRLSEVDIQASIAYAKALEKAGILTKTELEKILSGLEKISEELSKGVIVVTQSDEDIQTANERRLKELIGDIAGKLHTGRSRNEQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSVATLLLIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKSGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVIDVVDTLTAVLQVATGVISTLQISKENMEKALTPEMLATDLALYLVRKGMPFRQAHTASGKAVHLAETKGIAINNLTLEDLKSISPLFSSDVSQVFNFVNSVEQYTALGGTAKSSVTTQIEQLRELMKKQKE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords DELTA CRYSTALLIN I
publication title Structural studies of duck delta 1 and delta 2 crystallin suggest conformational changes occur during catalysis.
pubmed doi rcsb
source organism Anas platyrhynchos
molecule tags Lyase
total genus 183
structure length 447
sequence length 447
chains with identical sequence B
ec nomenclature ec 4.3.2.1: Argininosuccinate lyase.
pdb deposition date 2001-01-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF14698 ASL_C2 Argininosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 1hy0A03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1hy0A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1hy0A02
1RE5A 5EYVA 4APBA 4C6GA 1J3UA 4BABA 3NZ4A 1KQ7A 4FLCA 2OHYA 4NLEA 4V2QA 2J91A 5EYTA 1HY1A 1YFMA 1GK2A 2YIIA 3E04A 3OCEA 5F92A 3KDYA 1U16A 1JSWA 3GTDA 4HGVA 1YISA 3C8TA 3QBPA 4CQ5A 4C5UA 4C5SA 1K7WA 4NSLA 4ADLA 4FFXA 1TJWA 4ADMA 1DCNA 3R6QA 1HY0A 1K62A 3CZOA 1VDKA 5HW2A 4EFCA 2NYFA 2PTRA 1FURA 1GK3A 5D6BA 4MX2A 4C5RA 1FUQA 2FUSA 1W27A 4EEIA 1DOFA 2PFMA 2O7FA 1GKJA 5F91A 1XWOA 1Q5NA 3RRPA 3BHGA 1GKMA 1U15A 2QGAB 2RJRA 1FUPA 1Y2MA 3NO9A 2O7BA 2HVGA 1AUWA 2NYNA 2O78A 1B8FA 3UNVA 3GZHA 2O7DA 1TJ7A 1EB4A 3TV2A 1T6PA 2O6YA 2PTSA 1T6JA 3OCFA 2PTQA 3RD8A 3R6VA 1FUOA 2QVEA 3R6YA 2VD6A 2RJSA 2E9FA 1TJUA 2O7EA 4V2RA 1C3CA 3KDZA 2X75A 1C3UA 1TJVA 1I0AA 4APAA 4BAAA 1YFEA
chains in the Genus database with same CATH superfamily
1RE5A 5EYVA 1XL7A 1Z4KA 4APBA 4C6GA 1Z4QA 1J3UA 1Q92A 4BABA 3NZ4A 1KQ7A 2JAWA 4FLCA 5H8WA 2OHYA 4NLEA 4V2QA 4L57A 2J91A 5EYTA 1HY1A 2JAOA 1YFMA 1GK2A 5M0IA 1Z4LA 2YIIA 1U0LA 3E04A 3OCEA 5F92A 3KDYA 1U16A 1JSWA 3GTDA 4HGVA 1YISA 3C8TA 3QBPA 4CQ5A 4C5UA 4C5SA 1Z4JA 1K7WA 1T9HA 4NSLA 4MWOA 4YIKA 4ADLA 4FFXA 2FENA 3BWVA 1TJWA 4ADMA 2JARA 1DCNA 3R6QA 1HY0A 1MH9A 1K62A 4L6CA 3CZOA 1VDKA 5HW2A 4EFCA 2NYFA 2PTRA 1FURA 1GK3A 5D6BA 2I7DA 4MX2A 4C5RA 1FUQA 3U19A 2VL7A 2VSFA 2FUSA 1XMDA 1Z4PX 3CRW1 1W27A 4EEIA 3F4TA 1DOFA 2RCNA 1Z4IA 2PFMA 2O7FA 1GKJA 1Z4MA 5F91A 1IW7D 3F4RA 1XWOA 1Q5NA 3RRPA 3BHGA 1GKMA 2FELA 1U15A 2QGAB 1XL8A 2RJRA 3F4SA 1FUPA 1Q91A 4IQJM 1Y2MA 3NO9A 2D27A 1XMCA 2O7BA 2HVGA 4WNLA 1AUWA 2NYNA 2O78A 1B8FA 3UNVA 3GZHA 2O7DA 4E88A 4A15A 1TJ7A 1EB4A 3TV2A 1T6PA 2O6YA 2PTSA 1T6JA 3OCFA 2PTQA 4YIHA 3CRVA 3RD8A 3R6VA 1FUOA 2QVEA 3R6YA 2YV5A 2VD6A 2RJSA 2E9FA 1TJUA 5M0JA 2O7EA 4V2RA 1C3CA 3KDZA 2X75A 2D28C 4NFLA 1C3UA 3CI0K 1TJVA 1XLYA 1I0AA 4L6AA 4APAA 4MUMA 3U13A 4BAAA 1YFEA 2JAUA
chains in the Genus database with same CATH topology
1RE5A 5EYVA 4APBA 4C6GA 1J3UA 4BABA 3NZ4A 1KQ7A 4FLCA 2OHYA 4NLEA 4V2QA 2J91A 5EYTA 1HY1A 1YFMA 1GK2A 2YIIA 3E04A 3OCEA 5F92A 3KDYA 1U16A 1JSWA 3GTDA 4HGVA 1YISA 3C8TA 3QBPA 4CQ5A 4C5UA 4C5SA 1K7WA 4NSLA 4ADLA 4FFXA 1TJWA 4ADMA 1DCNA 3R6QA 1HY0A 1K62A 3CZOA 1VDKA 5HW2A 4EFCA 2NYFA 2PTRA 1FURA 1GK3A 5D6BA 4MX2A 4C5RA 1FUQA 2FUSA 1W27A 4EEIA 1DOFA 2PFMA 2O7FA 1GKJA 5F91A 1XWOA 1Q5NA 3RRPA 3BHGA 1GKMA 1U15A 2QGAB 2RJRA 1FUPA 1Y2MA 3NO9A 2O7BA 2HVGA 1AUWA 2NYNA 2O78A 1B8FA 3UNVA 3GZHA 2O7DA 1TJ7A 1EB4A 3TV2A 1T6PA 2O6YA 2PTSA 1T6JA 3OCFA 2PTQA 3RD8A 3R6VA 1FUOA 2QVEA 3R6YA 2VD6A 2RJSA 2E9FA 1TJUA 2O7EA 4V2RA 1C3CA 3KDZA 2X75A 1C3UA 1TJVA 1I0AA 4APAA 4BAAA 1YFEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RE5 A;  5EYV A;  4APB A;  4C6G A;  1J3U A;  4BAB A;  3NZ4 A;  1KQ7 A;  4FLC A;  2OHY A;  4NLE A;  4V2Q A;  2J91 A;  5EYT A;  1HY1 A;  1YFM A;  1GK2 A;  2YII A;  3E04 A;  3OCE A;  5F92 A;  3KDY A;  1U16 A;  1JSW A;  3GTD A;  4HGV A;  1YIS A;  3C8T A;  3QBP A;  4CQ5 A;  4C5U A;  4C5S A;  1K7W A;  4NSL A;  4ADL A;  4FFX A;  1TJW A;  4ADM A;  1DCN A;  3R6Q A;  1HY0 A;  1K62 A;  3CZO A;  1VDK A;  5HW2 A;  4EFC A;  2NYF A;  2PTR A;  1FUR A;  1GK3 A;  5D6B A;  4MX2 A;  4C5R A;  1FUQ A;  2FUS A;  1W27 A;  4EEI A;  1DOF A;  2PFM A;  2O7F A;  1GKJ A;  5F91 A;  1XWO A;  1Q5N A;  3RRP A;  3BHG A;  1GKM A;  1U15 A;  2QGA B;  2RJR A;  1FUP A;  1Y2M A;  3NO9 A;  2O7B A;  2HVG A;  1AUW A;  2NYN A;  2O78 A;  1B8F A;  3UNV A;  3GZH A;  2O7D A;  1TJ7 A;  1EB4 A;  3TV2 A;  1T6P A;  2O6Y A;  2PTS A;  1T6J A;  3OCF A;  2PTQ A;  3RD8 A;  3R6V A;  1FUO A;  2QVE A;  3R6Y A;  2VD6 A;  2RJS A;  2E9F A;  1TJU A;  2O7E A;  4V2R A;  1C3C A;  3KDZ A;  2X75 A;  1C3U A;  1TJV A;  1I0A A;  4APA A;  4BAA A;  1YFE A; 
#chains in the Genus database with same CATH topology
 1RE5 A;  5EYV A;  1XL7 A;  1Z4K A;  4APB A;  4C6G A;  1Z4Q A;  1J3U A;  1Q92 A;  4BAB A;  3NZ4 A;  1KQ7 A;  2JAW A;  4FLC A;  5H8W A;  2OHY A;  4NLE A;  4V2Q A;  4L57 A;  2J91 A;  5EYT A;  1HY1 A;  2JAO A;  1YFM A;  1GK2 A;  5M0I A;  1Z4L A;  2YII A;  1U0L A;  3E04 A;  3OCE A;  5F92 A;  3KDY A;  1U16 A;  1JSW A;  3GTD A;  4HGV A;  1YIS A;  3C8T A;  3QBP A;  4CQ5 A;  4C5U A;  4C5S A;  1Z4J A;  1K7W A;  1T9H A;  4NSL A;  4MWO A;  4YIK A;  4ADL A;  4FFX A;  2FEN A;  3BWV A;  1TJW A;  4ADM A;  2JAR A;  1DCN A;  3R6Q A;  1HY0 A;  1MH9 A;  1K62 A;  4L6C A;  3CZO A;  1VDK A;  5HW2 A;  4EFC A;  2NYF A;  2PTR A;  1FUR A;  1GK3 A;  5D6B A;  2I7D A;  4MX2 A;  4C5R A;  1FUQ A;  3U19 A;  2VL7 A;  2VSF A;  2FUS A;  1XMD A;  1Z4P X;  3CRW 1;  1W27 A;  4EEI A;  3F4T A;  1DOF A;  2RCN A;  1Z4I A;  2PFM A;  2O7F A;  1GKJ A;  1Z4M A;  5F91 A;  1IW7 D;  3F4R A;  1XWO A;  1Q5N A;  3RRP A;  3BHG A;  1GKM A;  2FEL A;  1U15 A;  2QGA B;  1XL8 A;  2RJR A;  3F4S A;  1FUP A;  1Q91 A;  4IQJ M;  1Y2M A;  3NO9 A;  2D27 A;  1XMC A;  2O7B A;  2HVG A;  4WNL A;  1AUW A;  2NYN A;  2O78 A;  1B8F A;  3UNV A;  3GZH A;  2O7D A;  4E88 A;  4A15 A;  1TJ7 A;  1EB4 A;  3TV2 A;  1T6P A;  2O6Y A;  2PTS A;  1T6J A;  3OCF A;  2PTQ A;  4YIH A;  3CRV A;  3RD8 A;  3R6V A;  1FUO A;  2QVE A;  3R6Y A;  2YV5 A;  2VD6 A;  2RJS A;  2E9F A;  1TJU A;  5M0J A;  2O7E A;  4V2R A;  1C3C A;  3KDZ A;  2X75 A;  2D28 C;  4NFL A;  1C3U A;  3CI0 K;  1TJV A;  1XLY A;  1I0A A;  4L6A A;  4APA A;  4MUM A;  3U13 A;  4BAA A;  1YFE A;  2JAU A; 
#chains in the Genus database with same CATH homology
 1RE5 A;  5EYV A;  4APB A;  4C6G A;  1J3U A;  4BAB A;  3NZ4 A;  1KQ7 A;  4FLC A;  2OHY A;  4NLE A;  4V2Q A;  2J91 A;  5EYT A;  1HY1 A;  1YFM A;  1GK2 A;  2YII A;  3E04 A;  3OCE A;  5F92 A;  3KDY A;  1U16 A;  1JSW A;  3GTD A;  4HGV A;  1YIS A;  3C8T A;  3QBP A;  4CQ5 A;  4C5U A;  4C5S A;  1K7W A;  4NSL A;  4ADL A;  4FFX A;  1TJW A;  4ADM A;  1DCN A;  3R6Q A;  1HY0 A;  1K62 A;  3CZO A;  1VDK A;  5HW2 A;  4EFC A;  2NYF A;  2PTR A;  1FUR A;  1GK3 A;  5D6B A;  4MX2 A;  4C5R A;  1FUQ A;  2FUS A;  1W27 A;  4EEI A;  1DOF A;  2PFM A;  2O7F A;  1GKJ A;  5F91 A;  1XWO A;  1Q5N A;  3RRP A;  3BHG A;  1GKM A;  1U15 A;  2QGA B;  2RJR A;  1FUP A;  1Y2M A;  3NO9 A;  2O7B A;  2HVG A;  1AUW A;  2NYN A;  2O78 A;  1B8F A;  3UNV A;  3GZH A;  2O7D A;  1TJ7 A;  1EB4 A;  3TV2 A;  1T6P A;  2O6Y A;  2PTS A;  1T6J A;  3OCF A;  2PTQ A;  3RD8 A;  3R6V A;  1FUO A;  2QVE A;  3R6Y A;  2VD6 A;  2RJS A;  2E9F A;  1TJU A;  2O7E A;  4V2R A;  1C3C A;  3KDZ A;  2X75 A;  1C3U A;  1TJV A;  1I0A A;  4APA A;  4BAA A;  1YFE A; 
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similar chains in the pdb database (?% sequence similarity)

 
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