4REXA

Crystal structure of the first ww domain of human yap2 isoform
Total Genus 8

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
48
structure length
48
Chain Sequence
GAMGFEIPDDVPLPAGWEMAKTSSGQRYFLNHIDQTTTWQDPRKAMLS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Protein binding
source organism Homo sapiens
publication title Crystal structure of the first WW domain of human YAP2 isoform.
pubmed doi rcsb
molecule keywords Yorkie homolog
total genus 8
structure length 48
sequence length 48
ec nomenclature
pdb deposition date 2014-09-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00397 WW WW domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.10 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 4rexA00
2XPBA 3KADA 2ZQVA 2DJYA 3KAIA 2XP3A 4E5RA 3NTPA 3WH0A 4REXA 2E45A 2ZR6A 2EZ5W 4U84A 2M8IA 3TCZA 2YSIA 1EG4A 2M8JA 2JX8A 1I5HW 2XPAA 3ODKA 2XP4A 1WMVA 3CNGA 2ZR5A 2ITKA 2DK7A 3M85A 3KABA 1O6WA 2RE3A 4U85A 2JMFA 2DMVA 2XP9A 1K9QA 2XP7A 3M7NA 2JXWA 1WR7A 2ZR4A 1YW5A 2XP6A 2ZQSA 3OOBA 2M3OW 1NMVA 4QIBA 1PINA 2YSBA 3L4HA 2YSFA 2JV4A 1TK7A 2YSHA 2XP8A 4U86A 1EG3A 2DK1A 5CQ2A 2BA1A 1ZCNA 3KAHA 3KCEA 2ZQUA 3TDBA 2YSGA 2XP5A 2F21A 2L4JA 2ZAJA 3KAFA 3KAGA 2DWVA 2Q5AA 3LE4A 1F8AB 1K9RA 2LAJA 5AHTA 3TC5A 2MDIA 2ZQTA 1JMQA 2KXQA
chains in the Genus database with same CATH superfamily
2XPBA 3KADA 2ZQVA 2DJYA 3KAIA 3FS8A 2XP3A 5E66A 4E5RA 3NTPA 3WH0A 4REXA 2E45A 1FLCA 2ZR6A 3MCBB 3PQHA 2EZ5W 5E62A 4U84A 2WAEA 2M8IA 3TCZA 2YSIA 1EG4A 4A0UA 2M8JA 2JX8A 1I5HW 2XPAA 3ODKA 1TR8A 2XP4A 5E5WA 3CNGA 1WMVA 2ZR5A 2ITKA 3FSBA 2DK7A 3M85A 3KABA 1O6WA 4A0TA 2RE3A 4U85A 3MQGA 2JMFA 3LKXA 2DMVA 2QRVA 2OWOA 2Y8NB 2XP9A 1K9QA 2XP7A 3M7NA 2JXWA 1WR7A 2ZR4A 1YW5A 2XP6A 4GLXA 2ZQSA 3OOBA 2M3OW 3MQHA 1NMVA 4QIBA 3L4HA 1PINA 2YSBA 2YSFA 2JV4A 1TK7A 2YSHA 5U47A 2XP8A 4U86A 5E64A 5E65A 3LKXB 1EG3A 2DK1A 1RP5A 3FSCA 5CQ2A 2BA1A 1ZCNA 3KAHA 3KCEA 2ZQUA 3TDBA 2YSGA 2XP5A 3MCBA 2F21A 2L4JA 2WADA 2ZAJA 3KAFA 3KAGA 2DWVA 2Q5AA 2YAJB 3LE4A 1F8AB 1K9RA 2LAJA 5AHTA 3TC5A 2MDIA 2ZQTA 1JMQA 2KXQA
chains in the Genus database with same CATH topology
2XPBA 3KADA 2ZQVA 2DJYA 3KAIA 3FS8A 2XP3A 5E66A 4E5RA 3NTPA 3WH0A 4REXA 2E45A 1FLCA 2ZR6A 3MCBB 3PQHA 2EZ5W 5E62A 4U84A 2WAEA 2M8IA 3TCZA 2YSIA 1EG4A 4A0UA 2M8JA 2JX8A 1I5HW 2XPAA 3ODKA 1TR8A 2XP4A 5E5WA 3CNGA 1WMVA 2ZR5A 2ITKA 3FSBA 2DK7A 3M85A 3KABA 1O6WA 4A0TA 2RE3A 4U85A 3MQGA 2JMFA 3LKXA 2DMVA 2QRVA 2OWOA 2Y8NB 2XP9A 1K9QA 2XP7A 3M7NA 2JXWA 1WR7A 2ZR4A 1YW5A 2XP6A 4GLXA 2ZQSA 3OOBA 2M3OW 3MQHA 1NMVA 4QIBA 3L4HA 1PINA 2YSBA 2YSFA 2JV4A 1TK7A 2YSHA 5U47A 2XP8A 4U86A 5E64A 5E65A 3LKXB 1EG3A 2DK1A 1RP5A 3FSCA 5CQ2A 2BA1A 1ZCNA 3KAHA 3KCEA 2ZQUA 3TDBA 2YSGA 2XP5A 3MCBA 2F21A 2L4JA 2WADA 2ZAJA 3KAFA 3KAGA 2DWVA 2Q5AA 2YAJB 3LE4A 1F8AB 1K9RA 2LAJA 5AHTA 3TC5A 2MDIA 2ZQTA 1JMQA 2KXQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XPB A;  3KAD A;  2ZQV A;  2DJY A;  3KAI A;  2XP3 A;  4E5R A;  3NTP A;  3WH0 A;  4REX A;  2E45 A;  2ZR6 A;  2EZ5 W;  4U84 A;  2M8I A;  3TCZ A;  2YSI A;  1EG4 A;  2M8J A;  2JX8 A;  1I5H W;  2XPA A;  3ODK A;  2XP4 A;  1WMV A;  3CNG A;  2ZR5 A;  2ITK A;  2DK7 A;  3M85 A;  3KAB A;  1O6W A;  2RE3 A;  4U85 A;  2JMF A;  2DMV A;  2XP9 A;  1K9Q A;  2XP7 A;  3M7N A;  2JXW A;  1WR7 A;  2ZR4 A;  1YW5 A;  2XP6 A;  2ZQS A;  3OOB A;  2M3O W;  1NMV A;  4QIB A;  1PIN A;  2YSB A;  3L4H A;  2YSF A;  2JV4 A;  1TK7 A;  2YSH A;  2XP8 A;  4U86 A;  1EG3 A;  2DK1 A;  5CQ2 A;  2BA1 A;  1ZCN A;  3KAH A;  3KCE A;  2ZQU A;  3TDB A;  2YSG A;  2XP5 A;  2F21 A;  2L4J A;  2ZAJ A;  3KAF A;  3KAG A;  2DWV A;  2Q5A A;  3LE4 A;  1F8A B;  1K9R A;  2LAJ A;  5AHT A;  3TC5 A;  2MDI A;  2ZQT A;  1JMQ A;  2KXQ A; 
#chains in the Genus database with same CATH topology
 2XPB A;  3KAD A;  2ZQV A;  2DJY A;  3KAI A;  3FS8 A;  2XP3 A;  5E66 A;  4E5R A;  3NTP A;  3WH0 A;  4REX A;  2E45 A;  1FLC A;  2ZR6 A;  3MCB B;  3PQH A;  2EZ5 W;  5E62 A;  4U84 A;  2WAE A;  2M8I A;  3TCZ A;  2YSI A;  1EG4 A;  4A0U A;  2M8J A;  2JX8 A;  1I5H W;  2XPA A;  3ODK A;  1TR8 A;  2XP4 A;  5E5W A;  3CNG A;  1WMV A;  2ZR5 A;  2ITK A;  3FSB A;  2DK7 A;  3M85 A;  3KAB A;  1O6W A;  4A0T A;  2RE3 A;  4U85 A;  3MQG A;  2JMF A;  3LKX A;  2DMV A;  2QRV A;  2OWO A;  2Y8N B;  2XP9 A;  1K9Q A;  2XP7 A;  3M7N A;  2JXW A;  1WR7 A;  2ZR4 A;  1YW5 A;  2XP6 A;  4GLX A;  2ZQS A;  3OOB A;  2M3O W;  3MQH A;  1NMV A;  4QIB A;  3L4H A;  1PIN A;  2YSB A;  2YSF A;  2JV4 A;  1TK7 A;  2YSH A;  5U47 A;  2XP8 A;  4U86 A;  5E64 A;  5E65 A;  3LKX B;  1EG3 A;  2DK1 A;  1RP5 A;  3FSC A;  5CQ2 A;  2BA1 A;  1ZCN A;  3KAH A;  3KCE A;  2ZQU A;  3TDB A;  2YSG A;  2XP5 A;  3MCB A;  2F21 A;  2L4J A;  2WAD A;  2ZAJ A;  3KAF A;  3KAG A;  2DWV A;  2Q5A A;  2YAJ B;  3LE4 A;  1F8A B;  1K9R A;  2LAJ A;  5AHT A;  3TC5 A;  2MDI A;  2ZQT A;  1JMQ A;  2KXQ A; 
#chains in the Genus database with same CATH homology
 2XPB A;  3KAD A;  2ZQV A;  2DJY A;  3KAI A;  3FS8 A;  2XP3 A;  5E66 A;  4E5R A;  3NTP A;  3WH0 A;  4REX A;  2E45 A;  1FLC A;  2ZR6 A;  3MCB B;  3PQH A;  2EZ5 W;  5E62 A;  4U84 A;  2WAE A;  2M8I A;  3TCZ A;  2YSI A;  1EG4 A;  4A0U A;  2M8J A;  2JX8 A;  1I5H W;  2XPA A;  3ODK A;  1TR8 A;  2XP4 A;  5E5W A;  3CNG A;  1WMV A;  2ZR5 A;  2ITK A;  3FSB A;  2DK7 A;  3M85 A;  3KAB A;  1O6W A;  4A0T A;  2RE3 A;  4U85 A;  3MQG A;  2JMF A;  3LKX A;  2DMV A;  2QRV A;  2OWO A;  2Y8N B;  2XP9 A;  1K9Q A;  2XP7 A;  3M7N A;  2JXW A;  1WR7 A;  2ZR4 A;  1YW5 A;  2XP6 A;  4GLX A;  2ZQS A;  3OOB A;  2M3O W;  3MQH A;  1NMV A;  4QIB A;  3L4H A;  1PIN A;  2YSB A;  2YSF A;  2JV4 A;  1TK7 A;  2YSH A;  5U47 A;  2XP8 A;  4U86 A;  5E64 A;  5E65 A;  3LKX B;  1EG3 A;  2DK1 A;  1RP5 A;  3FSC A;  5CQ2 A;  2BA1 A;  1ZCN A;  3KAH A;  3KCE A;  2ZQU A;  3TDB A;  2YSG A;  2XP5 A;  3MCB A;  2F21 A;  2L4J A;  2WAD A;  2ZAJ A;  3KAF A;  3KAG A;  2DWV A;  2Q5A A;  2YAJ B;  3LE4 A;  1F8A B;  1K9R A;  2LAJ A;  5AHT A;  3TC5 A;  2MDI A;  2ZQT A;  1JMQ A;  2KXQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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