5AHTA

Third ww domain from the e3 ubiquitin-protein ligase nedd4
Total Genus 9

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
43
structure length
43
Chain Sequence
GSMEQGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLKIPA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TI1 (2-5)TIV1 (1-4)TI2 (3-6)S1 (12-16)TIV3 (6-9)TIV4 (26-29)TI3 (17-20)TI4 (27-30)S3 (31-33)EMPTY3H1 (37-39)O1 (41-43)TII1 (9-12)S2 (22-26)Updating...
connected with : NaN
molecule tags Isomerase
source organism Homo sapiens
publication title The Nedd4-1 Ww Domain Recognizes the Py Motif Peptide Through Coupled Folding and Binding Equilibria.
pubmed doi rcsb
molecule keywords E3 UBIQUITIN-PROTEIN LIGASE NEDD4
total genus 9
structure length 43
sequence length 43
ec nomenclature ec 2.3.2.26: HECT-type E3 ubiquitin transferase.
pdb deposition date 2015-02-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00397 WW WW domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.10 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 5ahtA01
3KAIA 2XP9A 2YSBA 1K9QA 2ZR4A 3KCEA 2M8IA 2XP5A 1YW5A 1K9RA 4U86A 3KAGA 1I5HW 3M85A 2ZQUA 1ZCNA 4REXA 2JV4A 3TC5A 3OOBA 2XP4A 3ODKA 2ZR6A 2XP8A 2XP6A 2BA1A 2DK7A 2ZR5A 4U84A 2JMFA 3CNGA 2DMVA 1EG3A 3KADA 2ZAJA 1NMVA 1PINA 1WMVA 2F21A 5AHTA 1O6WA 2XP7A 3KABA 2ZQSA 2ITKA 4U85A 2ZQTA 1TK7A 2JX8A 2MDIA 1JMQA 5CQ2A 2DJYA 3L4HA 2YSGA 2E45A 2ZQVA 2KXQA 2Q5AA 1EG4A 2LAJA 3KAHA 2XP3A 3TDBA 2L4JA 4E5RA 2RE3A 1F8AB 3WH0A 2DK1A 3LE4A 2XPAA 2YSHA 4QIBA 3TCZA 3KAFA 2DWVA 2XPBA 3NTPA 2YSIA 2M3OW 1WR7A 2EZ5W 2JXWA 2M8JA 2YSFA 3M7NA
chains in the Genus database with same CATH superfamily
3KAIA 2XP9A 2YSBA 3MCBB 1K9QA 5U47A 2WAEA 2ZR4A 3KCEA 2M8IA 3PQHA 2XP5A 1YW5A 1K9RA 4U86A 4A0TA 3KAGA 2WADA 1I5HW 3M85A 2ZQUA 1ZCNA 4REXA 2JV4A 3TC5A 3OOBA 1RP5A 2XP4A 3MQGA 3ODKA 2ZR6A 2XP8A 1TR8A 2XP6A 2BA1A 2DK7A 2ZR5A 4U84A 2JMFA 3CNGA 2DMVA 3LKXA 1EG3A 3KADA 5E5WA 2ZAJA 1NMVA 1PINA 1WMVA 2F21A 5AHTA 1O6WA 2XP7A 3KABA 3FSBA 2ZQSA 3MCBA 2ITKA 4U85A 2ZQTA 1TK7A 2JX8A 2MDIA 1JMQA 5CQ2A 2DJYA 2QRVA 3LKXB 3L4HA 2YSGA 2E45A 2OWOA 2ZQVA 2KXQA 2Q5AA 1EG4A 5E66A 2LAJA 5E62A 3KAHA 2Y8NB 2XP3A 3TDBA 2L4JA 4E5RA 2RE3A 5E65A 1F8AB 2YAJB 4A0UA 3WH0A 2DK1A 3LE4A 3MQHA 2XPAA 2YSHA 4QIBA 3TCZA 3KAFA 3FSCA 2DWVA 2XPBA 3NTPA 1FLCA 2YSIA 2M3OW 5E64A 1WR7A 2EZ5W 2JXWA 2M8JA 3FS8A 4GLXA 2YSFA 3M7NA
chains in the Genus database with same CATH topology
3KAIA 2XP9A 2YSBA 3MCBB 1K9QA 5U47A 2WAEA 2ZR4A 3KCEA 2M8IA 3PQHA 2XP5A 1YW5A 1K9RA 4U86A 4A0TA 3KAGA 2WADA 1I5HW 3M85A 2ZQUA 1ZCNA 4REXA 2JV4A 3TC5A 3OOBA 1RP5A 2XP4A 3MQGA 3ODKA 2ZR6A 2XP8A 1TR8A 2XP6A 2BA1A 2DK7A 2ZR5A 4U84A 2JMFA 3CNGA 2DMVA 3LKXA 1EG3A 3KADA 5E5WA 2ZAJA 1NMVA 1PINA 1WMVA 2F21A 5AHTA 1O6WA 2XP7A 3KABA 3FSBA 2ZQSA 3MCBA 2ITKA 4U85A 2ZQTA 1TK7A 2JX8A 2MDIA 1JMQA 5CQ2A 2DJYA 2QRVA 3LKXB 3L4HA 2YSGA 2E45A 2OWOA 2ZQVA 2KXQA 2Q5AA 1EG4A 5E66A 2LAJA 5E62A 3KAHA 2Y8NB 2XP3A 3TDBA 2L4JA 4E5RA 2RE3A 5E65A 1F8AB 2YAJB 4A0UA 3WH0A 2DK1A 3LE4A 3MQHA 2XPAA 2YSHA 4QIBA 3TCZA 3KAFA 3FSCA 2DWVA 2XPBA 3NTPA 1FLCA 2YSIA 2M3OW 5E64A 1WR7A 2EZ5W 2JXWA 2M8JA 3FS8A 4GLXA 2YSFA 3M7NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KAI A;  2XP9 A;  2YSB A;  1K9Q A;  2ZR4 A;  3KCE A;  2M8I A;  2XP5 A;  1YW5 A;  1K9R A;  4U86 A;  3KAG A;  1I5H W;  3M85 A;  2ZQU A;  1ZCN A;  4REX A;  2JV4 A;  3TC5 A;  3OOB A;  2XP4 A;  3ODK A;  2ZR6 A;  2XP8 A;  2XP6 A;  2BA1 A;  2DK7 A;  2ZR5 A;  4U84 A;  2JMF A;  3CNG A;  2DMV A;  1EG3 A;  3KAD A;  2ZAJ A;  1NMV A;  1PIN A;  1WMV A;  2F21 A;  5AHT A;  1O6W A;  2XP7 A;  3KAB A;  2ZQS A;  2ITK A;  4U85 A;  2ZQT A;  1TK7 A;  2JX8 A;  2MDI A;  1JMQ A;  5CQ2 A;  2DJY A;  3L4H A;  2YSG A;  2E45 A;  2ZQV A;  2KXQ A;  2Q5A A;  1EG4 A;  2LAJ A;  3KAH A;  2XP3 A;  3TDB A;  2L4J A;  4E5R A;  2RE3 A;  1F8A B;  3WH0 A;  2DK1 A;  3LE4 A;  2XPA A;  2YSH A;  4QIB A;  3TCZ A;  3KAF A;  2DWV A;  2XPB A;  3NTP A;  2YSI A;  2M3O W;  1WR7 A;  2EZ5 W;  2JXW A;  2M8J A;  2YSF A;  3M7N A; 
#chains in the Genus database with same CATH topology
 3KAI A;  2XP9 A;  2YSB A;  3MCB B;  1K9Q A;  5U47 A;  2WAE A;  2ZR4 A;  3KCE A;  2M8I A;  3PQH A;  2XP5 A;  1YW5 A;  1K9R A;  4U86 A;  4A0T A;  3KAG A;  2WAD A;  1I5H W;  3M85 A;  2ZQU A;  1ZCN A;  4REX A;  2JV4 A;  3TC5 A;  3OOB A;  1RP5 A;  2XP4 A;  3MQG A;  3ODK A;  2ZR6 A;  2XP8 A;  1TR8 A;  2XP6 A;  2BA1 A;  2DK7 A;  2ZR5 A;  4U84 A;  2JMF A;  3CNG A;  2DMV A;  3LKX A;  1EG3 A;  3KAD A;  5E5W A;  2ZAJ A;  1NMV A;  1PIN A;  1WMV A;  2F21 A;  5AHT A;  1O6W A;  2XP7 A;  3KAB A;  3FSB A;  2ZQS A;  3MCB A;  2ITK A;  4U85 A;  2ZQT A;  1TK7 A;  2JX8 A;  2MDI A;  1JMQ A;  5CQ2 A;  2DJY A;  2QRV A;  3LKX B;  3L4H A;  2YSG A;  2E45 A;  2OWO A;  2ZQV A;  2KXQ A;  2Q5A A;  1EG4 A;  5E66 A;  2LAJ A;  5E62 A;  3KAH A;  2Y8N B;  2XP3 A;  3TDB A;  2L4J A;  4E5R A;  2RE3 A;  5E65 A;  1F8A B;  2YAJ B;  4A0U A;  3WH0 A;  2DK1 A;  3LE4 A;  3MQH A;  2XPA A;  2YSH A;  4QIB A;  3TCZ A;  3KAF A;  3FSC A;  2DWV A;  2XPB A;  3NTP A;  1FLC A;  2YSI A;  2M3O W;  5E64 A;  1WR7 A;  2EZ5 W;  2JXW A;  2M8J A;  3FS8 A;  4GLX A;  2YSF A;  3M7N A; 
#chains in the Genus database with same CATH homology
 3KAI A;  2XP9 A;  2YSB A;  3MCB B;  1K9Q A;  5U47 A;  2WAE A;  2ZR4 A;  3KCE A;  2M8I A;  3PQH A;  2XP5 A;  1YW5 A;  1K9R A;  4U86 A;  4A0T A;  3KAG A;  2WAD A;  1I5H W;  3M85 A;  2ZQU A;  1ZCN A;  4REX A;  2JV4 A;  3TC5 A;  3OOB A;  1RP5 A;  2XP4 A;  3MQG A;  3ODK A;  2ZR6 A;  2XP8 A;  1TR8 A;  2XP6 A;  2BA1 A;  2DK7 A;  2ZR5 A;  4U84 A;  2JMF A;  3CNG A;  2DMV A;  3LKX A;  1EG3 A;  3KAD A;  5E5W A;  2ZAJ A;  1NMV A;  1PIN A;  1WMV A;  2F21 A;  5AHT A;  1O6W A;  2XP7 A;  3KAB A;  3FSB A;  2ZQS A;  3MCB A;  2ITK A;  4U85 A;  2ZQT A;  1TK7 A;  2JX8 A;  2MDI A;  1JMQ A;  5CQ2 A;  2DJY A;  2QRV A;  3LKX B;  3L4H A;  2YSG A;  2E45 A;  2OWO A;  2ZQV A;  2KXQ A;  2Q5A A;  1EG4 A;  5E66 A;  2LAJ A;  5E62 A;  3KAH A;  2Y8N B;  2XP3 A;  3TDB A;  2L4J A;  4E5R A;  2RE3 A;  5E65 A;  1F8A B;  2YAJ B;  4A0U A;  3WH0 A;  2DK1 A;  3LE4 A;  3MQH A;  2XPA A;  2YSH A;  4QIB A;  3TCZ A;  3KAF A;  3FSC A;  2DWV A;  2XPB A;  3NTP A;  1FLC A;  2YSI A;  2M3O W;  5E64 A;  1WR7 A;  2EZ5 W;  2JXW A;  2M8J A;  3FS8 A;  4GLX A;  2YSF A;  3M7N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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