5E66A

The complex structure of hemagglutinin-esterase-fusion mutant protein from the influenza d virus with receptor analog 9-n-ac-sia
Total Genus 109
50100150200250300350400020406080100
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
109
sequence length
427
structure length
424
Chain Sequence
ELICIVQRVNESFSLHSGFGGNVYSMKTEPMTGFTNVTKGASVINQKDWIGFGDSRTDLTNDQFPASSDVPLAVAKKFRSLSGASLMLSAFGPPGKVDYLYQGCGKEKVFYEGVNWSPEAGIDCFGSNWTQTKKDFYSRIYEAARSSTCMTLVNSLDTKISSTTATAGTASSCSSSWMKSPLWYAESSVNPPQVCGTEQSATFTLPTSFGIYKCNKHVVQLCYFVYENKAKFNTFGCGDYYQNYYDGNGNLIGGMDNRVAAYRGIANAGVKIECPSKILNPGTYSIKSTPRFLLVPKRSYCFDTDGGYPIQVVQSEWSASRRSDNATEEACLQTEGCIFIKKTTPYVGEADDNHGDIEMRQLLSGLGNNDTVCVSQSGYTKGETPFVKDYLSPPKYGRCQLKTDSGRIPTLPSGLIIPQAGTDS
50100150200250300350400400300200100
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title An Open Receptor-Binding Cavity of Hemagglutinin-Esterase-Fusion Glycoprotein from Newly-Identified Influenza D Virus: Basis for Its Broad Cell Tropism
pubmed doi rcsb
molecule tags Hydrolase
source organism Influenza d virus (d/swine/oklahoma/1334/2011)
molecule keywords Hemagglutinin-esterase
total genus 109
structure length 424
sequence length 427
ec nomenclature
pdb deposition date 2015-10-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02710 Hema_HEFG Hemagglutinin domain of haemagglutinin-esterase-fusion glycoprotein
A PF03996 Hema_esterase Hemagglutinin esterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.70.20 Mainly Beta Single Sheet Ubiquitin Ligase Nedd4; Chain: W; Ubiquitin Ligase Nedd4; Chain: W; 5e66A01
5E5WA 5E62A 5E65A 5E64A 5E66A 1FLCA
chains in the Genus database with same CATH superfamily
3WH0A 2DMVA 3LKXB 3KAIA 2JV4A 3OOBA 2L4JA 5CQ2A 1O6WA 1TK7A 2YSGA 2M8IA 3MQHA 1K9RA 1WMVA 2ZQUA 1FLCA 1WR7A 2ZAJA 3LKXA 5E65A 1RP5A 2DK1A 5E62A 2YSFA 2JMFA 3LE4A 2ZR6A 1TR8A 3KCEA 2XPBA 2OWOA 2XP8A 2YSBA 2M8JA 2WAEA 2ZR5A 1PINA 3CNGA 3TDBA 4A0TA 1YW5A 2EZ5W 3TCZA 2Q5AA 2ITKA 2QRVA 2XPAA 2DWVA 3FSBA 3KAGA 2MDIA 2YSHA 2JX8A 2WADA 2RE3A 2DJYA 2LAJA 2ZR4A 4QIBA 1EG4A 3FS8A 4U84A 5E5WA 3M85A 1NMVA 1ZCNA 1F8AB 2ZQTA 3KADA 2E45A 1K9QA 2JXWA 3KABA 2KXQA 3PQHA 3KAHA 2Y8NB 2XP5A 4E5RA 2XP7A 3MQGA 2F21A 4U86A 3NTPA 2XP9A 3MCBB 1JMQA 1EG3A 5U47A 2XP4A 3M7NA 2YSIA 3FSCA 5E66A 3KAFA 2ZQSA 3ODKA 4A0UA 2YAJB 5AHTA 1I5HW 4U85A 5E64A 2XP6A 2BA1A 4REXA 2M3OW 3MCBA 2ZQVA 2DK7A 2XP3A 3L4HA 4GLXA 3TC5A
chains in the Genus database with same CATH topology
3WH0A 2DMVA 3LKXB 3KAIA 2JV4A 3OOBA 2L4JA 5CQ2A 1O6WA 1TK7A 2YSGA 2M8IA 3MQHA 1K9RA 1WMVA 2ZQUA 1FLCA 1WR7A 2ZAJA 3LKXA 5E65A 1RP5A 2DK1A 5E62A 2YSFA 2JMFA 3LE4A 2ZR6A 1TR8A 3KCEA 2XPBA 2OWOA 2XP8A 2YSBA 2M8JA 2WAEA 2ZR5A 1PINA 3CNGA 3TDBA 4A0TA 1YW5A 2EZ5W 3TCZA 2Q5AA 2ITKA 2QRVA 2XPAA 2DWVA 3FSBA 3KAGA 2MDIA 2YSHA 2JX8A 2WADA 2RE3A 2DJYA 2LAJA 2ZR4A 4QIBA 1EG4A 3FS8A 4U84A 5E5WA 3M85A 1NMVA 1ZCNA 1F8AB 2ZQTA 3KADA 2E45A 1K9QA 2JXWA 3KABA 2KXQA 3PQHA 3KAHA 2Y8NB 2XP5A 4E5RA 2XP7A 3MQGA 2F21A 4U86A 3NTPA 2XP9A 3MCBB 1JMQA 1EG3A 5U47A 2XP4A 3M7NA 2YSIA 3FSCA 5E66A 3KAFA 2ZQSA 3ODKA 4A0UA 2YAJB 5AHTA 1I5HW 4U85A 5E64A 2XP6A 2BA1A 4REXA 2M3OW 3MCBA 2ZQVA 2DK7A 2XP3A 3L4HA 4GLXA 3TC5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5E5W A;  5E62 A;  5E65 A;  5E64 A;  5E66 A;  1FLC A; 
#chains in the Genus database with same CATH topology
 3WH0 A;  2DMV A;  3LKX B;  3KAI A;  2JV4 A;  3OOB A;  2L4J A;  5CQ2 A;  1O6W A;  1TK7 A;  2YSG A;  2M8I A;  3MQH A;  1K9R A;  1WMV A;  2ZQU A;  1FLC A;  1WR7 A;  2ZAJ A;  3LKX A;  5E65 A;  1RP5 A;  2DK1 A;  5E62 A;  2YSF A;  2JMF A;  3LE4 A;  2ZR6 A;  1TR8 A;  3KCE A;  2XPB A;  2OWO A;  2XP8 A;  2YSB A;  2M8J A;  2WAE A;  2ZR5 A;  1PIN A;  3CNG A;  3TDB A;  4A0T A;  1YW5 A;  2EZ5 W;  3TCZ A;  2Q5A A;  2ITK A;  2QRV A;  2XPA A;  2DWV A;  3FSB A;  3KAG A;  2MDI A;  2YSH A;  2JX8 A;  2WAD A;  2RE3 A;  2DJY A;  2LAJ A;  2ZR4 A;  4QIB A;  1EG4 A;  3FS8 A;  4U84 A;  5E5W A;  3M85 A;  1NMV A;  1ZCN A;  1F8A B;  2ZQT A;  3KAD A;  2E45 A;  1K9Q A;  2JXW A;  3KAB A;  2KXQ A;  3PQH A;  3KAH A;  2Y8N B;  2XP5 A;  4E5R A;  2XP7 A;  3MQG A;  2F21 A;  4U86 A;  3NTP A;  2XP9 A;  3MCB B;  1JMQ A;  1EG3 A;  5U47 A;  2XP4 A;  3M7N A;  2YSI A;  3FSC A;  5E66 A;  3KAF A;  2ZQS A;  3ODK A;  4A0U A;  2YAJ B;  5AHT A;  1I5H W;  4U85 A;  5E64 A;  2XP6 A;  2BA1 A;  4REX A;  2M3O W;  3MCB A;  2ZQV A;  2DK7 A;  2XP3 A;  3L4H A;  4GLX A;  3TC5 A; 
#chains in the Genus database with same CATH homology
 3WH0 A;  2DMV A;  3LKX B;  3KAI A;  2JV4 A;  3OOB A;  2L4J A;  5CQ2 A;  1O6W A;  1TK7 A;  2YSG A;  2M8I A;  3MQH A;  1K9R A;  1WMV A;  2ZQU A;  1FLC A;  1WR7 A;  2ZAJ A;  3LKX A;  5E65 A;  1RP5 A;  2DK1 A;  5E62 A;  2YSF A;  2JMF A;  3LE4 A;  2ZR6 A;  1TR8 A;  3KCE A;  2XPB A;  2OWO A;  2XP8 A;  2YSB A;  2M8J A;  2WAE A;  2ZR5 A;  1PIN A;  3CNG A;  3TDB A;  4A0T A;  1YW5 A;  2EZ5 W;  3TCZ A;  2Q5A A;  2ITK A;  2QRV A;  2XPA A;  2DWV A;  3FSB A;  3KAG A;  2MDI A;  2YSH A;  2JX8 A;  2WAD A;  2RE3 A;  2DJY A;  2LAJ A;  2ZR4 A;  4QIB A;  1EG4 A;  3FS8 A;  4U84 A;  5E5W A;  3M85 A;  1NMV A;  1ZCN A;  1F8A B;  2ZQT A;  3KAD A;  2E45 A;  1K9Q A;  2JXW A;  3KAB A;  2KXQ A;  3PQH A;  3KAH A;  2Y8N B;  2XP5 A;  4E5R A;  2XP7 A;  3MQG A;  2F21 A;  4U86 A;  3NTP A;  2XP9 A;  3MCB B;  1JMQ A;  1EG3 A;  5U47 A;  2XP4 A;  3M7N A;  2YSI A;  3FSC A;  5E66 A;  3KAF A;  2ZQS A;  3ODK A;  4A0U A;  2YAJ B;  5AHT A;  1I5H W;  4U85 A;  5E64 A;  2XP6 A;  2BA1 A;  4REX A;  2M3O W;  3MCB A;  2ZQV A;  2DK7 A;  2XP3 A;  3L4H A;  4GLX A;  3TC5 A; 
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