3TK8 | Genus

Total Genus 93

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	93
sequence length	261
structure length	261
Chain Sequence	NMSQQLQQIIDNAWENRAELSPKAASAEIREAVAHAIEQLDRGALRVAEKIDGAWTVHQWLKKAVLLSFRLEDNAPMPAGGYSQFYDKVPSKFANYTAEDFAAGGFRVVPPAIARRGSFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYDRETGEVTYGRIPAGSVVVAGNLPAKDGTHSLYCAVIVKKVDA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Burkholderia pseudomallei
publication title	Structure of a 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase from Burkholderia pseudomallei rcsb
molecule keywords	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltrans
total genus	93
structure length	261
sequence length	261
chains with identical sequence	B, C
ec nomenclature	ec 2.3.1.117: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase.
pdb deposition date	2011-08-25

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00132	Hexapep	Bacterial transferase hexapeptide (six repeats)
A	PF14602	Hexapep_2	Hexapeptide repeat of succinyl-transferase
A	PF14805	THDPS_N_2	Tetrahydrodipicolinate N-succinyltransferase N-terminal

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.166.10	Mainly Alpha	Orthogonal Bundle	Tetrahydrodipicolinate-N-succinyltransferase; Chain A, domain 1	Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain	3tk8A01
2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase; domain 1	Hexapeptide repeat proteins	3tk8A02

3TDTA 3OW5A 3R2WA 4R36A 1HM9A 3VNPA 4H7OA 1YP3A 4HUSA 5DG3A 3OTMA 3TK8A 3VBJA 2IUAA 2OI6A 3EH0A 4KNRA 4N6BA 3MQGA 3R3IA 3D98A 1KHRA 2V0JA 3BSWA 2IU8A 1QRFA 3FWWA 4K6RA 4KPZA 1FXJA 1QQ0A 3R5AA 4G3SA 3I3AA 1G95A 4M2BA 3P1BA 4AC3A 4EA9A 1KGTA 2QIAA 3TIOA 1Z90A 4HURA 4EA7A 3TV0A 2I5KA 3KWCA 2WLGA 1S80A 3OUPA 1T3DA 4G3QA 4HCQA 4ISXA 4J09A 4M98A 3VBPA 4E6UA 3TISA 2V0IA 5ADXU 1KRVA 5DEPA 3GOSA 5E3QA 3MC4A 2NPOA 5L6VA 4EA8A 3FSCA 3ECTA 2OEGA 2RIJA 1OCXA 5AFUV 1J2ZA 1KRRA 2WLFA 3FSXA 4EGGA 4M28A 1SSTA 1MR7A 2OEFA 3DK5A 1KQAA 3GUEA 4HZCA 4R37A 5F42A 1KK5A 1SSQA 3BSYA 3C8VA 3VBLA 4IHGA 4J18A 4M99A 2GGQA 3R5DA 3SPTA 3Q1XA 3IGJA 2P2OA 4DCLA 1HM8A 1YP2A 3FS8A 4KPXA 5DEMA 4EQYA 2OI7A 4G3PA 2AQ9A 2TDTA 3FSYA 2ICXA 1QRMA 2GGOA 3EG4A 3I3XA 2V0HA 3R5CA 3D8VA 2JF2A 4R7PA 1HV9A 2V0LA 4N6AA 4AAWA 3R5BA 2V0KA 2WLEA 4EABA 3F1XA 3KWEA 4HZDA 1QRGA 5U2KA 3VBIA 4E79A 2QIVX 3OTZA 4IHHA 5ADXV 2JF3A 4M2AA 1V3WA 3VBKA 3VBMA 1THJA 4N27A 4KQLA 1KRUA 1MR9A 3V4EA 1TDTA 1V67A 2VHEA 2WLCA 1G97A 3R0SA 1QREA 1KK4A 1SSMA 3HJJA 3R8YA 4M9CA 1FWYA 2QKXA 4MYOA 3PMOA 3OU9A 2Q4JA 1HM0A 3MQHA 3GVDA 4MFGA 3FTTA 4AA7A 2IU9A 4G87A 4MZUA 2W0VA 5AFUU 5E3PA 2IC7A 1MRLA 3BFPA 3FSBA 2W0WA 4N69A 3CJ8A 2ICYA 1XHDA 3SRTA 4FCEA 1XATA 3IXCA 3NZ2A 1KK6A 2VD4A 3TWDA 1LXAA 3BSSA 3JQYA 3DJ4A 5E3RA 5L6SA 3BRKX 4IHFA 3T57A 4E1KA 2OI5A 3DHOA 3FOQA 3R3RA 4KNXA 1QRLA 3VBNA 2XATA 2FKOA 4E75A 2WLDA 3HSQA 1KGQA 3P47A 4EAAA 3KWDA 4E6TA 3EEVA 1YP4A 3ST8A 3BXYA 3R1WA
chains in the Genus database with same CATH superfamily

3TDTA 3OW5A 3R2WA 4R36A 1HM9A 3VNPA 4H7OA 1YP3A 4HUSA 5DG3A 3OTMA 3TK8A 3GQAA 2IUAA 2OI6A 3EH0A 4KNRA 4N6BA 3MQGA 3VBJA 3R3IA 3D98A 1KHRA 2V0JA 3BSWA 2IU8A 1QRFA 3FWWA 4K6RA 4KPZA 3OH4A 1FXJA 1QQ0A 3R5AA 4G3SA 3I3AA 1G95A 4M2BA 1EWWA 3P1BA 4AC3A 4EA9A 1KGTA 2QIAA 3TIOA 1Z90A 4HURA 4EA7A 3TV0A 2I5KA 3KWCA 2WLGA 1S80A 3OH0A 3OUPA 1T3DA 4G3QA 4HCQA 4ISXA 4J09A 4M98A 3VBPA 4E6UA 3TISA 2V0IA 5ADXU 1KRVA 5DEPA 3GOSA 5E3QA 3MC4A 2NPOA 5L6VA 4EA8A 3FSCA 3ECTA 2OEGA 2RIJA 1OCXA 5AFUV 1J2ZA 1KRRA 2WLFA 3FSXA 4EGGA 4M28A 1SSTA 1MR7A 2OEFA 3DK5A 1KQAA 3GUEA 3SUCA 4HZCA 4R37A 5F42A 1KK5A 1SSQA 3BSYA 3C8VA 3VBLA 4IHGA 4J18A 4M99A 2GGQA 3R5DA 3SPTA 3Q1XA 3IGJA 1N4IA 2P2OA 4DCLA 1HM8A 1YP2A 3FS8A 4KPXA 5DEMA 4EQYA 2OI7A 4G3PA 2AQ9A 2TDTA 3FSYA 2ICXA 3OGZA 1QRMA 2GGOA 3EG4A 3I3XA 2V0HA 3R5CA 3D8VA 2JF2A 4R7PA 1HV9A 2V0LA 4N6AA 1Z2FA 3R5BA 4AAWA 2V0KA 2WLEA 4EABA 3F1XA 3KWEA 4HZDA 1QRGA 5U2KA 3VBIA 4E79A 2QIVX 3OTZA 4IHHA 3OH3A 5ADXV 2JF3A 4M2AA 1V3WA 3VBKA 3VBMA 3OH2A 1THJA 3GQ7A 4N27A 4KQLA 3GQ9A 1KRUA 1L0SA 1MR9A 3V4EA 1TDTA 1V67A 2VHEA 2WLCA 1G97A 3R0SA 1QREA 1KK4A 1SSMA 3HJJA 3R8YA 4M9CA 1FWYA 2QKXA 4MYOA 3PMOA 3OU9A 2Q4JA 1HM0A 3MQHA 3OH1A 3GVDA 3GQ8A 4MFGA 3FTTA 4AA7A 2IU9A 4G87A 4MZUA 2W0VA 5AFUU 5E3PA 2IC7A 1MRLA 3BFPA 3FSBA 2W0WA 4N69A 3CJ8A 2ICYA 1XHDA 3SRTA 4FCEA 1XATA 3IXCA 3NZ2A 1KK6A 2VD4A 3TWDA 1LXAA 3BSSA 3JQYA 3DJ4A 5E3RA 5L6SA 3BRKX 4IHFA 3T57A 1M8NA 2OI5A 3DHOA 3FOQA 3R3RA 4KNXA 4E1KA 1QRLA 3VBNA 2XATA 2FKOA 4E75A 2WLDA 3HSQA 1KGQA 3P47A 4EAAA 3KWDA 4E6TA 3EEVA 1YP4A 3ST8A 3BXYA 3R1WA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3TDT A;  3OW5 A;  3R2W A;  4R36 A;  1HM9 A;  3VNP A;  4H7O A;  1YP3 A;  4HUS A;  5DG3 A;  3OTM A;  3TK8 A;  3VBJ A;  2IUA A;  2OI6 A;  3EH0 A;  4KNR A;  4N6B A;  3MQG A;  3R3I A;  3D98 A;  1KHR A;  2V0J A;  3BSW A;  2IU8 A;  1QRF A;  3FWW A;  4K6R A;  4KPZ A;  1FXJ A;  1QQ0 A;  3R5A A;  4G3S A;  3I3A A;  1G95 A;  4M2B A;  3P1B A;  4AC3 A;  4EA9 A;  1KGT A;  2QIA A;  3TIO A;  1Z90 A;  4HUR A;  4EA7 A;  3TV0 A;  2I5K A;  3KWC A;  2WLG A;  1S80 A;  3OUP A;  1T3D A;  4G3Q A;  4HCQ A;  4ISX A;  4J09 A;  4M98 A;  3VBP A;  4E6U A;  3TIS A;  2V0I A;  5ADX U;  1KRV A;  5DEP A;  3GOS A;  5E3Q A;  3MC4 A;  2NPO A;  5L6V A;  4EA8 A;  3FSC A;  3ECT A;  2OEG A;  2RIJ A;  1OCX A;  5AFU V;  1J2Z A;  1KRR A;  2WLF A;  3FSX A;  4EGG A;  4M28 A;  1SST A;  1MR7 A;  2OEF A;  3DK5 A;  1KQA A;  3GUE A;  4HZC A;  4R37 A;  5F42 A;  1KK5 A;  1SSQ A;  3BSY A;  3C8V A;  3VBL A;  4IHG A;  4J18 A;  4M99 A;  2GGQ A;  3R5D A;  3SPT A;  3Q1X A;  3IGJ A;  2P2O A;  4DCL A;  1HM8 A;  1YP2 A;  3FS8 A;  4KPX A;  5DEM A;  4EQY A;  2OI7 A;  4G3P A;  2AQ9 A;  2TDT A;  3FSY A;  2ICX A;  1QRM A;  2GGO A;  3EG4 A;  3I3X A;  2V0H A;  3R5C A;  3D8V A;  2JF2 A;  4R7P A;  1HV9 A;  2V0L A;  4N6A A;  4AAW A;  3R5B A;  2V0K A;  2WLE A;  4EAB A;  3F1X A;  3KWE A;  4HZD A;  1QRG A;  5U2K A;  3VBI A;  4E79 A;  2QIV X;  3OTZ A;  4IHH A;  5ADX V;  2JF3 A;  4M2A A;  1V3W A;  3VBK A;  3VBM A;  1THJ A;  4N27 A;  4KQL A;  1KRU A;  1MR9 A;  3V4E A;  1TDT A;  1V67 A;  2VHE A;  2WLC A;  1G97 A;  3R0S A;  1QRE A;  1KK4 A;  1SSM A;  3HJJ A;  3R8Y A;  4M9C A;  1FWY A;  2QKX A;  4MYO A;  3PMO A;  3OU9 A;  2Q4J A;  1HM0 A;  3MQH A;  3GVD A;  4MFG A;  3FTT A;  4AA7 A;  2IU9 A;  4G87 A;  4MZU A;  2W0V A;  5AFU U;  5E3P A;  2IC7 A;  1MRL A;  3BFP A;  3FSB A;  2W0W A;  4N69 A;  3CJ8 A;  2ICY A;  1XHD A;  3SRT A;  4FCE A;  1XAT A;  3IXC A;  3NZ2 A;  1KK6 A;  2VD4 A;  3TWD A;  1LXA A;  3BSS A;  3JQY A;  3DJ4 A;  5E3R A;  5L6S A;  3BRK X;  4IHF A;  3T57 A;  4E1K A;  2OI5 A;  3DHO A;  3FOQ A;  3R3R A;  4KNX A;  1QRL A;  3VBN A;  2XAT A;  2FKO A;  4E75 A;  2WLD A;  3HSQ A;  1KGQ A;  3P47 A;  4EAA A;  3KWD A;  4E6T A;  3EEV A;  1YP4 A;  3ST8 A;  3BXY A;  3R1W A; 
#chains in the Genus database with same CATH topology
 3TDT A;  3OW5 A;  3R2W A;  4R36 A;  1HM9 A;  3VNP A;  4H7O A;  1YP3 A;  4HUS A;  5DG3 A;  3OTM A;  3TK8 A;  3GQA A;  2IUA A;  2OI6 A;  3EH0 A;  4KNR A;  4N6B A;  3MQG A;  3VBJ A;  3R3I A;  3D98 A;  1KHR A;  2V0J A;  3BSW A;  2IU8 A;  1QRF A;  3FWW A;  4K6R A;  4KPZ A;  3OH4 A;  1FXJ A;  1QQ0 A;  3R5A A;  4G3S A;  3I3A A;  1G95 A;  4M2B A;  1EWW A;  3P1B A;  4AC3 A;  4EA9 A;  1KGT A;  2QIA A;  3TIO A;  1Z90 A;  4HUR A;  4EA7 A;  3TV0 A;  2I5K A;  3KWC A;  2WLG A;  1S80 A;  3OH0 A;  3OUP A;  1T3D A;  4G3Q A;  4HCQ A;  4ISX A;  4J09 A;  4M98 A;  3VBP A;  4E6U A;  3TIS A;  2V0I A;  5ADX U;  1KRV A;  5DEP A;  3GOS A;  5E3Q A;  3MC4 A;  2NPO A;  5L6V A;  4EA8 A;  3FSC A;  3ECT A;  2OEG A;  2RIJ A;  1OCX A;  5AFU V;  1J2Z A;  1KRR A;  2WLF A;  3FSX A;  4EGG A;  4M28 A;  1SST A;  1MR7 A;  2OEF A;  3DK5 A;  1KQA A;  3GUE A;  3SUC A;  4HZC A;  4R37 A;  5F42 A;  1KK5 A;  1SSQ A;  3BSY A;  3C8V A;  3VBL A;  4IHG A;  4J18 A;  4M99 A;  2GGQ A;  3R5D A;  3SPT A;  3Q1X A;  3IGJ A;  1N4I A;  2P2O A;  4DCL A;  1HM8 A;  1YP2 A;  3FS8 A;  4KPX A;  5DEM A;  4EQY A;  2OI7 A;  4G3P A;  2AQ9 A;  2TDT A;  3FSY A;  2ICX A;  3OGZ A;  1QRM A;  2GGO A;  3EG4 A;  3I3X A;  2V0H A;  3R5C A;  3D8V A;  2JF2 A;  4R7P A;  1HV9 A;  2V0L A;  4N6A A;  1Z2F A;  3R5B A;  4AAW A;  2V0K A;  2WLE A;  4EAB A;  3F1X A;  3KWE A;  4HZD A;  1QRG A;  5U2K A;  3VBI A;  4E79 A;  2QIV X;  3OTZ A;  4IHH A;  3OH3 A;  5ADX V;  2JF3 A;  4M2A A;  1V3W A;  3VBK A;  3VBM A;  3OH2 A;  1THJ A;  3GQ7 A;  4N27 A;  4KQL A;  3GQ9 A;  1KRU A;  1L0S A;  1MR9 A;  3V4E A;  1TDT A;  1V67 A;  2VHE A;  2WLC A;  1G97 A;  3R0S A;  1QRE A;  1KK4 A;  1SSM A;  3HJJ A;  3R8Y A;  4M9C A;  1FWY A;  2QKX A;  4MYO A;  3PMO A;  3OU9 A;  2Q4J A;  1HM0 A;  3MQH A;  3OH1 A;  3GVD A;  3GQ8 A;  4MFG A;  3FTT A;  4AA7 A;  2IU9 A;  4G87 A;  4MZU A;  2W0V A;  5AFU U;  5E3P A;  2IC7 A;  1MRL A;  3BFP A;  3FSB A;  2W0W A;  4N69 A;  3CJ8 A;  2ICY A;  1XHD A;  3SRT A;  4FCE A;  1XAT A;  3IXC A;  3NZ2 A;  1KK6 A;  2VD4 A;  3TWD A;  1LXA A;  3BSS A;  3JQY A;  3DJ4 A;  5E3R A;  5L6S A;  3BRK X;  4IHF A;  3T57 A;  1M8N A;  2OI5 A;  3DHO A;  3FOQ A;  3R3R A;  4KNX A;  4E1K A;  1QRL A;  3VBN A;  2XAT A;  2FKO A;  4E75 A;  2WLD A;  3HSQ A;  1KGQ A;  3P47 A;  4EAA A;  3KWD A;  4E6T A;  3EEV A;  1YP4 A;  3ST8 A;  3BXY A;  3R1W A; 
#chains in the Genus database with same CATH homology
 3TDT A;  3OW5 A;  3R2W A;  4R36 A;  1HM9 A;  3VNP A;  4H7O A;  1YP3 A;  4HUS A;  5DG3 A;  3OTM A;  3TK8 A;  3VBJ A;  2IUA A;  2OI6 A;  3EH0 A;  4KNR A;  4N6B A;  3MQG A;  3R3I A;  3D98 A;  1KHR A;  2V0J A;  3BSW A;  2IU8 A;  1QRF A;  3FWW A;  4K6R A;  4KPZ A;  1FXJ A;  1QQ0 A;  3R5A A;  4G3S A;  3I3A A;  1G95 A;  4M2B A;  3P1B A;  4AC3 A;  4EA9 A;  1KGT A;  2QIA A;  3TIO A;  1Z90 A;  4HUR A;  4EA7 A;  3TV0 A;  2I5K A;  3KWC A;  2WLG A;  1S80 A;  3OUP A;  1T3D A;  4G3Q A;  4HCQ A;  4ISX A;  4J09 A;  4M98 A;  3VBP A;  4E6U A;  3TIS A;  2V0I A;  5ADX U;  1KRV A;  5DEP A;  3GOS A;  5E3Q A;  3MC4 A;  2NPO A;  5L6V A;  4EA8 A;  3FSC A;  3ECT A;  2OEG A;  2RIJ A;  1OCX A;  5AFU V;  1J2Z A;  1KRR A;  2WLF A;  3FSX A;  4EGG A;  4M28 A;  1SST A;  1MR7 A;  2OEF A;  3DK5 A;  1KQA A;  3GUE A;  4HZC A;  4R37 A;  5F42 A;  1KK5 A;  1SSQ A;  3BSY A;  3C8V A;  3VBL A;  4IHG A;  4J18 A;  4M99 A;  2GGQ A;  3R5D A;  3SPT A;  3Q1X A;  3IGJ A;  2P2O A;  4DCL A;  1HM8 A;  1YP2 A;  3FS8 A;  4KPX A;  5DEM A;  4EQY A;  2OI7 A;  4G3P A;  2AQ9 A;  2TDT A;  3FSY A;  2ICX A;  1QRM A;  2GGO A;  3EG4 A;  3I3X A;  2V0H A;  3R5C A;  3D8V A;  2JF2 A;  4R7P A;  1HV9 A;  2V0L A;  4N6A A;  4AAW A;  3R5B A;  2V0K A;  2WLE A;  4EAB A;  3F1X A;  3KWE A;  4HZD A;  1QRG A;  5U2K A;  3VBI A;  4E79 A;  2QIV X;  3OTZ A;  4IHH A;  5ADX V;  2JF3 A;  4M2A A;  1V3W A;  3VBK A;  3VBM A;  1THJ A;  4N27 A;  4KQL A;  1KRU A;  1MR9 A;  3V4E A;  1TDT A;  1V67 A;  2VHE A;  2WLC A;  1G97 A;  3R0S A;  1QRE A;  1KK4 A;  1SSM A;  3HJJ A;  3R8Y A;  4M9C A;  1FWY A;  2QKX A;  4MYO A;  3PMO A;  3OU9 A;  2Q4J A;  1HM0 A;  3MQH A;  3GVD A;  4MFG A;  3FTT A;  4AA7 A;  2IU9 A;  4G87 A;  4MZU A;  2W0V A;  5AFU U;  5E3P A;  2IC7 A;  1MRL A;  3BFP A;  3FSB A;  2W0W A;  4N69 A;  3CJ8 A;  2ICY A;  1XHD A;  3SRT A;  4FCE A;  1XAT A;  3IXC A;  3NZ2 A;  1KK6 A;  2VD4 A;  3TWD A;  1LXA A;  3BSS A;  3JQY A;  3DJ4 A;  5E3R A;  5L6S A;  3BRK X;  4IHF A;  3T57 A;  4E1K A;  2OI5 A;  3DHO A;  3FOQ A;  3R3R A;  4KNX A;  1QRL A;  3VBN A;  2XAT A;  2FKO A;  4E75 A;  2WLD A;  3HSQ A;  1KGQ A;  3P47 A;  4EAA A;  3KWD A;  4E6T A;  3EEV A;  1YP4 A;  3ST8 A;  3BXY A;  3R1W A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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3TK8A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations