The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
119
|
sequence length |
381
|
structure length |
381
|
Chain Sequence |
GMINTKEDFLLLIKQIEQKSGYKKPKAFGIARLDRGQLNKNKILQASFALINYEQNFGSAAIMLEAFMQRGVEIDFNASEFVQTLKLEDIDFALSCFKPFLEEDGHQNIDLLKIIKDKFKDDEFSFVCLFEDKEPLSVESIYLKLYLLSTKKVPLRSINLNGAFGLLSNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTRILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGACMVEGRISSSAIVGEGSDVGGGASILGVLSGTSGNAISVGKACLLGANSVTGIPLGDNCIVDAGIAVLEGTKFLLKDAEELAKLNPYFNFDKEIYKGLELKGLNGLHFRQDSISGAMIVALNKKAVK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
Putative 2,3,4,5-tetrahydropyridine-2-carboxylate N- succiny
|
| publication title |
Crystal structure of Putative 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (NP_282733.1) from Campylobacter jejuni at 1.90 A resolution
rcsb |
| source organism |
Campylobacter jejuni
|
| molecule tags |
Transferase
|
| total genus |
119
|
| structure length |
381
|
| sequence length |
381
|
| ec nomenclature |
ec
2.3.1.117: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. |
| pdb deposition date | 2007-10-11 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF14602 | Hexapep_2 | Hexapeptide repeat of succinyl-transferase |
| A | PF14789 | THDPS_M | Tetrahydrodipicolinate N-succinyltransferase middle |
| A | PF14790 | THDPS_N | Tetrahydrodipicolinate N-succinyltransferase N-terminal |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | 3 Solenoid | UDP N-Acetylglucosamine Acyltransferase; domain 1 | Hexapeptide repeat proteins | ||
| Alpha Beta | 2-Layer Sandwich | Wheat Germ Agglutinin (Isolectin 2); domain 1 | Trimeric LpxA-like enzymes | ||
| Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Alpha-Beta Plaits |
