The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
60
|
sequence length |
180
|
structure length |
176
|
Chain Sequence |
LEKMLKGHASAEIEALRSQAGRLKLEINQSLDEAERYALQRELFGHLGHKSCVQPPFHCEFGKTIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQFYTASHSLDYRRRQAWETICKPIVIEDDVWIGGNVVINQGVTIGARSVVAANSVVNQDVPPDTLVGGTPARILRSLKD
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal Structure of the Hexapeptide-Repeat Containing-Acetyltransferase VCA0836 from Vibrio cholerae
rcsb |
| molecule tags |
Transferase
|
| source organism |
Vibrio cholerae
|
| molecule keywords |
Hexapeptide-repeat containing-acetyltransferase
|
| total genus |
60
|
| structure length |
176
|
| sequence length |
180
|
| ec nomenclature | |
| pdb deposition date | 2008-09-02 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00132 | Hexapep | Bacterial transferase hexapeptide (six repeats) |
| A | PF12464 | Mac | Maltose acetyltransferase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | 3 Solenoid | UDP N-Acetylglucosamine Acyltransferase; domain 1 | Hexapeptide repeat proteins |
#chains in the Genus database with same CATH superfamily 2OEG A; 2W0V A; 2V0I A; 4EA7 A; 3R3I A; 3FSY A; 4R37 A; 2OI7 A; 3R5C A; 2ICY A; 2JF3 A; 2WLG A; 3C8V A; 3R0S A; 3BSY A; 1XHD A; 3BSS A; 1XAT A; 2IUA A; 3IGJ A; 3PMO A; 1HM8 A; 1HM0 A; 3OTM A; 4MZU A; 2VHE A; 5AFU U; 2V0H A; 4N6A A; 3VNP A; 2TDT A; 2WLC A; 3MQG A; 3OU9 A; 1KK4 A; 3Q1X A; 2IC7 A; 4E6U A; 2I5K A; 3R1W A; 4J18 A; 5L6S A; 3VBL A; 2Q4J A; 4M28 A; 4EA9 A; 3OUP A; 1QRF A; 4KPZ A; 3EEV A; 3TK8 A; 5E3Q A; 1HM9 A; 3EG4 A; 3D8V A; 3GUE A; 1T3D A; 3T57 A; 4IHH A; 4E75 A; 4HUR A; 3BRK X; 2OI6 A; 4KPX A; 3ECT A; 4K6R A; 1QRE A; 3R5D A; 1G95 A; 1YP4 A; 2OI5 A; 3I3X A; 4M99 A; 4G87 A; 1G97 A; 2JF2 A; 3OTZ A; 5E3R A; 1QQ0 A; 5E3P A; 3VBJ A; 2V0J A; 2V0K A; 3NZ2 A; 1KQA A; 3OW5 A; 4N27 A; 4N6B A; 4EAA A; 4E6T A; 1V67 A; 3I3A A; 3F1X A; 4N69 A; 4G3S A; 1KRR A; 1SSQ A; 2AQ9 A; 3CJ8 A; 5DEP A; 3P47 A; 4M2A A; 4IHG A; 1SSM A; 4HZD A; 1YP2 A; 3GOS A; 3TWD A; 4AC3 A; 3R3R A; 1KHR A; 2ICX A; 5DEM A; 3TIS A; 3GVD A; 3BSW A; 3KWD A; 4J09 A; 3R2W A; 4EAB A; 4AA7 A; 4EGG A; 5F42 A; 5U2K A; 4HCQ A; 1S80 A; 3BXY A; 3P1B A; 4IHF A; 3ST8 A; 1KGT A; 2W0W A; 3FSB A; 1QRM A; 3R5B A; 3IXC A; 2IU8 A; 3MC4 A; 2V0L A; 4G3P A; 3BFP A; 3SRT A; 3VBM A; 4HUS A; 1THJ A; 3MQH A; 2QIV X; 4H7O A; 2RIJ A; 3VBP A; 4MFG A; 1SST A; 1V3W A; 3FOQ A; 1MR9 A; 3JQY A; 3VBI A; 1LXA A; 4DCL A; 3R8Y A; 1YP3 A; 4KQL A; 4KNX A; 4M2B A; 4M98 A; 3TIO A; 5ADX U; 3KWE A; 4MYO A; 1OCX A; 2IU9 A; 3TV0 A; 3FWW A; 1FWY A; 4G3Q A; 1KGQ A; 5ADX V; 3TDT A; 2OEF A; 2FKO A; 1HV9 A; 3V4E A; 3EH0 A; 4ISX A; 1MRL A; 3DJ4 A; 4EA8 A; 4R36 A; 1KRU A; 4EQY A; 2WLE A; 3R5A A; 2WLD A; 2QKX A; 1MR7 A; 2GGO A; 3FSC A; 3VBN A; 4E1K A; 3DHO A; 1FXJ A; 2NPO A; 3D98 A; 4M9C A; 4E79 A; 1KRV A; 5L6V A; 3SPT A; 3HJJ A; 1KK6 A; 5AFU V; 1TDT A; 2WLF A; 2XAT A; 4HZC A; 3VBK A; 4FCE A; 3KWC A; 4KNR A; 3FS8 A; 3FSX A; 5DG3 A; 1QRL A; 3FTT A; 2GGQ A; 2QIA A; 3HSQ A; 4AAW A; 2P2O A; 3DK5 A; 1Z90 A; 1QRG A; 2VD4 A; 1KK5 A; 4R7P A; 1J2Z A; #chains in the Genus database with same CATH topology 1EWW A; 2OEG A; 2W0V A; 2V0I A; 4EA7 A; 3R3I A; 3FSY A; 4R37 A; 2OI7 A; 3R5C A; 2ICY A; 2JF3 A; 3GQ8 A; 2WLG A; 3C8V A; 3R0S A; 3BSY A; 1XHD A; 3BSS A; 1XAT A; 2IUA A; 3IGJ A; 3PMO A; 1HM8 A; 1HM0 A; 3OTM A; 4MZU A; 2VHE A; 5AFU U; 2V0H A; 4N6A A; 3VNP A; 2TDT A; 2WLC A; 3MQG A; 3OU9 A; 1KK4 A; 3Q1X A; 2IC7 A; 4E6U A; 2I5K A; 3R1W A; 4J18 A; 5L6S A; 3VBL A; 2Q4J A; 4M28 A; 3OH2 A; 3OGZ A; 4EA9 A; 3OUP A; 1QRF A; 4KPZ A; 3EEV A; 3TK8 A; 5E3Q A; 1HM9 A; 3EG4 A; 3D8V A; 3GUE A; 1T3D A; 3T57 A; 1N4I A; 4IHH A; 4E75 A; 4HUR A; 3BRK X; 2OI6 A; 4KPX A; 3ECT A; 4K6R A; 1QRE A; 3OH4 A; 3R5D A; 1G95 A; 1YP4 A; 2OI5 A; 3I3X A; 4M99 A; 4G87 A; 1G97 A; 2JF2 A; 3OTZ A; 5E3R A; 1QQ0 A; 3GQ9 A; 5E3P A; 3VBJ A; 2V0J A; 2V0K A; 3NZ2 A; 1KQA A; 3OW5 A; 4N27 A; 4N6B A; 4EAA A; 4E6T A; 1V67 A; 3I3A A; 3F1X A; 4N69 A; 4G3S A; 1KRR A; 1SSQ A; 2AQ9 A; 3CJ8 A; 5DEP A; 3P47 A; 4M2A A; 3OH0 A; 4IHG A; 1SSM A; 4HZD A; 1YP2 A; 3GOS A; 3TWD A; 4AC3 A; 3R3R A; 1KHR A; 2ICX A; 5DEM A; 3TIS A; 3GVD A; 3BSW A; 3KWD A; 4J09 A; 3GQ7 A; 3R2W A; 4EAB A; 4AA7 A; 4EGG A; 5F42 A; 5U2K A; 4HCQ A; 3OH3 A; 1S80 A; 3BXY A; 3P1B A; 3OH1 A; 4IHF A; 3ST8 A; 1KGT A; 2W0W A; 3FSB A; 1QRM A; 3R5B A; 3IXC A; 2IU8 A; 3MC4 A; 2V0L A; 4G3P A; 3BFP A; 3SRT A; 3VBM A; 4HUS A; 1THJ A; 3MQH A; 2QIV X; 4H7O A; 2RIJ A; 3VBP A; 4MFG A; 1SST A; 1V3W A; 3FOQ A; 1MR9 A; 3JQY A; 3VBI A; 1LXA A; 4DCL A; 3R8Y A; 1YP3 A; 4KQL A; 4KNX A; 4M2B A; 4M98 A; 1L0S A; 3TIO A; 5ADX U; 3KWE A; 4MYO A; 1OCX A; 2IU9 A; 3TV0 A; 3FWW A; 1FWY A; 4G3Q A; 1KGQ A; 3GQA A; 5ADX V; 3TDT A; 2OEF A; 2FKO A; 1HV9 A; 3V4E A; 3EH0 A; 4ISX A; 1MRL A; 3DJ4 A; 4EA8 A; 1Z2F A; 4R36 A; 3SUC A; 1KRU A; 4EQY A; 2WLE A; 3R5A A; 2WLD A; 2QKX A; 1MR7 A; 2GGO A; 3FSC A; 3VBN A; 4E1K A; 3DHO A; 1FXJ A; 2NPO A; 3D98 A; 4M9C A; 4E79 A; 1KRV A; 5L6V A; 3SPT A; 3HJJ A; 1KK6 A; 5AFU V; 1TDT A; 2WLF A; 2XAT A; 4HZC A; 3VBK A; 4FCE A; 3KWC A; 4KNR A; 3FS8 A; 3FSX A; 5DG3 A; 1QRL A; 3FTT A; 2GGQ A; 2QIA A; 3HSQ A; 4AAW A; 2P2O A; 3DK5 A; 1Z90 A; 1QRG A; 2VD4 A; 1KK5 A; 1M8N A; 4R7P A; 1J2Z A; #chains in the Genus database with same CATH homology 2OEG A; 2W0V A; 2V0I A; 4EA7 A; 3R3I A; 3FSY A; 4R37 A; 2OI7 A; 3R5C A; 2ICY A; 2JF3 A; 2WLG A; 3C8V A; 3R0S A; 3BSY A; 1XHD A; 3BSS A; 1XAT A; 2IUA A; 3IGJ A; 3PMO A; 1HM8 A; 1HM0 A; 3OTM A; 4MZU A; 2VHE A; 5AFU U; 2V0H A; 4N6A A; 3VNP A; 2TDT A; 2WLC A; 3MQG A; 3OU9 A; 1KK4 A; 3Q1X A; 2IC7 A; 4E6U A; 2I5K A; 3R1W A; 4J18 A; 5L6S A; 3VBL A; 2Q4J A; 4M28 A; 4EA9 A; 3OUP A; 1QRF A; 4KPZ A; 3EEV A; 3TK8 A; 5E3Q A; 1HM9 A; 3EG4 A; 3D8V A; 3GUE A; 1T3D A; 3T57 A; 4IHH A; 4E75 A; 4HUR A; 3BRK X; 2OI6 A; 4KPX A; 3ECT A; 4K6R A; 1QRE A; 3R5D A; 1G95 A; 1YP4 A; 2OI5 A; 3I3X A; 4M99 A; 4G87 A; 1G97 A; 2JF2 A; 3OTZ A; 5E3R A; 1QQ0 A; 5E3P A; 3VBJ A; 2V0J A; 2V0K A; 3NZ2 A; 1KQA A; 3OW5 A; 4N27 A; 4N6B A; 4EAA A; 4E6T A; 1V67 A; 3I3A A; 3F1X A; 4N69 A; 4G3S A; 1KRR A; 1SSQ A; 2AQ9 A; 3CJ8 A; 5DEP A; 3P47 A; 4M2A A; 4IHG A; 1SSM A; 4HZD A; 1YP2 A; 3GOS A; 3TWD A; 4AC3 A; 3R3R A; 1KHR A; 2ICX A; 5DEM A; 3TIS A; 3GVD A; 3BSW A; 3KWD A; 4J09 A; 3R2W A; 4EAB A; 4AA7 A; 4EGG A; 5F42 A; 5U2K A; 4HCQ A; 1S80 A; 3BXY A; 3P1B A; 4IHF A; 3ST8 A; 1KGT A; 2W0W A; 3FSB A; 1QRM A; 3R5B A; 3IXC A; 2IU8 A; 3MC4 A; 2V0L A; 4G3P A; 3BFP A; 3SRT A; 3VBM A; 4HUS A; 1THJ A; 3MQH A; 2QIV X; 4H7O A; 2RIJ A; 3VBP A; 4MFG A; 1SST A; 1V3W A; 3FOQ A; 1MR9 A; 3JQY A; 3VBI A; 1LXA A; 4DCL A; 3R8Y A; 1YP3 A; 4KQL A; 4KNX A; 4M2B A; 4M98 A; 3TIO A; 5ADX U; 3KWE A; 4MYO A; 1OCX A; 2IU9 A; 3TV0 A; 3FWW A; 1FWY A; 4G3Q A; 1KGQ A; 5ADX V; 3TDT A; 2OEF A; 2FKO A; 1HV9 A; 3V4E A; 3EH0 A; 4ISX A; 1MRL A; 3DJ4 A; 4EA8 A; 4R36 A; 1KRU A; 4EQY A; 2WLE A; 3R5A A; 2WLD A; 2QKX A; 1MR7 A; 2GGO A; 3FSC A; 3VBN A; 4E1K A; 3DHO A; 1FXJ A; 2NPO A; 3D98 A; 4M9C A; 4E79 A; 1KRV A; 5L6V A; 3SPT A; 3HJJ A; 1KK6 A; 5AFU V; 1TDT A; 2WLF A; 2XAT A; 4HZC A; 3VBK A; 4FCE A; 3KWC A; 4KNR A; 3FS8 A; 3FSX A; 5DG3 A; 1QRL A; 3FTT A; 2GGQ A; 2QIA A; 3HSQ A; 4AAW A; 2P2O A; 3DK5 A; 1Z90 A; 1QRG A; 2VD4 A; 1KK5 A; 4R7P A; 1J2Z A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
