5DEP | Genus

Total Genus 107

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	107
sequence length	258
structure length	258
Chain Sequence	MSLIDPRAIIDPSARLAADVQVGPWSIVGAEVEIGEGTVIGPHVVLKGPTKIGKHNRIYQFSSVGEDTPDLKYKGEPTRLVIGDHNVIREGVTIHRGTVQDRAETTIGDHNLIMAYAHIGHDSVIGNHCILVNNTALAGHVHVDDWAILSGYTLVHQYCRIGAHSFSGMGSAIGKDVPAYVTVFGNPAEARSMNFEGMRRRGFSSEAIHALRRAYKVVYRQGHTVEEALAELAESAAQFPEVAVFRDSIQSATRGITR

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Pseudomonas aeruginosa (strain pa7)
publication title	Structures of Pseudomonas aeruginosa LpxA Reveal the Basis for Its Substrate Selectivity. pubmed doi rcsb
molecule keywords	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acylt
total genus	107
structure length	258
sequence length	258
chains with identical sequence	B, C, D, E, F
ec nomenclature	ec 2.3.1.129: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase.
pdb deposition date	2015-08-25

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00132	Hexapep	Bacterial transferase hexapeptide (six repeats)
A	PF13720	Acetyltransf_11	Udp N-acetylglucosamine O-acyltransferase; Domain 2

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1180.10	Mainly Alpha	Up-down Bundle	Udp N-acetylglucosamine O-acyltransferase; Domain 2	Udp N-acetylglucosamine O-acyltransferase, C-terminal domain	5depA02
2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase; domain 1	Hexapeptide repeat proteins	5depA01

1XHDA 3GOSA 2WLDA 1S80A 2IC7A 2V0JA 2WLGA 3Q1XA 4KPXA 1V67A 3FSCA 3IXCA 4M2AA 4N27A 3DJ4A 3R5CA 3TISA 3ECTA 4HCQA 1G95A 1KK4A 3BSSA 4M98A 3T57A 1KK5A 5E3PA 2JF2A 5E3QA 4J09A 3EEVA 3BXYA 3MQHA 2OEFA 3FOQA 2P2OA 1KRUA 3R5BA 3SPTA 3R3RA 2OI7A 3D8VA 4G3PA 2V0IA 1XATA 3BSWA 1T3DA 3OW5A 2W0WA 1HM9A 5ADXV 2V0LA 3C8VA 3R3IA 4HZDA 3VBLA 2WLCA 1MR7A 1OCXA 1FWYA 1QRMA 1TDTA 4EABA 4ISXA 3TWDA 3OTZA 1SSQA 3V4EA 1HM0A 4IHFA 4M9CA 1YP4A 2TDTA 1J2ZA 3VNPA 4R36A 1QRGA 4IHGA 3R8YA 2AQ9A 3DK5A 3KWEA 4HUSA 4EQYA 3TK8A 2ICXA 2OI6A 3FTTA 3VBJA 1QQ0A 2NPOA 2OEGA 4EGGA 3P1BA 1THJA 3GVDA 4HURA 4K6RA 4H7OA 2QIVX 1SSMA 2V0KA 2RIJA 2Q4JA 3R5AA 4AAWA 3NZ2A 2XATA 4N6AA 3CJ8A 3R1WA 4FCEA 2GGQA 1KHRA 4E1KA 4DCLA 3VBNA 4E75A 4E6UA 4G3QA 4KPZA 4EAAA 2IU9A 5F42A 2I5KA 1LXAA 5DG3A 1Z90A 3BFPA 5DEMA 4G87A 2QIAA 3I3XA 1SSTA 2IUAA 4EA9A 4MZUA 2JF3A 1QREA 4N69A 3D98A 4M99A 3ST8A 4R7PA 2VHEA 2QKXA 3OTMA 4EA7A 1MR9A 3F1XA 1YP2A 3TV0A 4M28A 3VBMA 5L6SA 5AFUU 3VBPA 1QRLA 3BRKX 3FSYA 1V3WA 3FSBA 3FS8A 3EG4A 4M2BA 2VD4A 4J18A 3FWWA 5E3RA 3VBKA 2V0HA 1KK6A 3EH0A 3KWDA 3P47A 1KGQA 1KRRA 2GGOA 4AA7A 2WLEA 2FKOA 3GUEA 3JQYA 3I3AA 4E6TA 5U2KA 3HSQA 3OU9A 3TDTA 3MC4A 3HJJA 3KWCA 1KRVA 1FXJA 3PMOA 3OUPA 4MFGA 1KGTA 3R5DA 4IHHA 3VBIA 4E79A 1MRLA 4G3SA 5L6VA 5ADXU 4AC3A 3BSYA 3DHOA 3SRTA 2W0VA 4MYOA 5DEPA 3TIOA 3FSXA 4EA8A 1YP3A 1QRFA 4KNRA 2IU8A 3R0SA 1G97A 4KQLA 5AFUV 4HZCA 3R2WA 4KNXA 1HV9A 1KQAA 2ICYA 2WLFA 3MQGA 4R37A 2OI5A 4N6BA 3IGJA 1HM8A
chains in the Genus database with same CATH superfamily

1XHDA 3GOSA 2WLDA 1S80A 2IC7A 2V0JA 2WLGA 3Q1XA 4KPXA 1V67A 3FSCA 3IXCA 1EWWA 4M2AA 4N27A 1Z2FA 3DJ4A 3R5CA 3TISA 3ECTA 3OH3A 4HCQA 1G95A 1KK4A 3BSSA 4M98A 3T57A 1KK5A 5E3PA 2JF2A 5E3QA 4J09A 3EEVA 3BXYA 3MQHA 2OEFA 3FOQA 2P2OA 1KRUA 3R5BA 3SPTA 3GQ8A 3R3RA 2OI7A 3D8VA 4G3PA 2V0IA 1XATA 3BSWA 1T3DA 3OW5A 2W0WA 3OGZA 1HM9A 5ADXV 2V0LA 3SUCA 3C8VA 3GQ7A 3R3IA 4HZDA 3VBLA 2WLCA 1M8NA 1MR7A 1OCXA 1FWYA 1QRMA 1TDTA 4EABA 4ISXA 3TWDA 3OTZA 1SSQA 3V4EA 1HM0A 4IHFA 4M9CA 1YP4A 2TDTA 1J2ZA 3VNPA 4R36A 1QRGA 4IHGA 3R8YA 2AQ9A 3DK5A 3KWEA 4HUSA 4EQYA 3TK8A 2ICXA 2OI6A 3FTTA 3VBJA 1QQ0A 2NPOA 2OEGA 4EGGA 3P1BA 1THJA 3GVDA 4HURA 4K6RA 4H7OA 2QIVX 1SSMA 2V0KA 2RIJA 2Q4JA 3R5AA 4AAWA 3NZ2A 2XATA 4N6AA 3CJ8A 3R1WA 4FCEA 3OH0A 2GGQA 1KHRA 3OH4A 4E1KA 4DCLA 3VBNA 4E75A 4E6UA 3GQAA 4G3QA 4KPZA 4EAAA 2IU9A 5F42A 2I5KA 1LXAA 5DG3A 1Z90A 3BFPA 5DEMA 4G87A 2QIAA 3I3XA 1SSTA 2IUAA 3GQ9A 4EA9A 4MZUA 2JF3A 1QREA 4N69A 3D98A 4M99A 3ST8A 4R7PA 2VHEA 2QKXA 3OTMA 4EA7A 1MR9A 3F1XA 1YP2A 3TV0A 4M28A 3VBMA 5L6SA 5AFUU 3VBPA 1QRLA 3BRKX 3FSYA 1V3WA 3FSBA 3FS8A 3EG4A 4M2BA 2VD4A 4J18A 3FWWA 5E3RA 3VBKA 2V0HA 1KK6A 3EH0A 3KWDA 3P47A 1KGQA 1KRRA 2GGOA 4AA7A 2WLEA 2FKOA 3GUEA 3JQYA 3I3AA 4E6TA 5U2KA 3HSQA 3OU9A 3TDTA 3MC4A 3HJJA 3KWCA 3OH1A 1KRVA 1FXJA 3PMOA 3OUPA 4MFGA 1KGTA 3R5DA 4IHHA 3VBIA 4E79A 1MRLA 4G3SA 1L0SA 5L6VA 5ADXU 4AC3A 3BSYA 3DHOA 3SRTA 2W0VA 4MYOA 5DEPA 1N4IA 3TIOA 3FSXA 4EA8A 1YP3A 1QRFA 4KNRA 2IU8A 3R0SA 1G97A 4KQLA 5AFUV 3OH2A 3R2WA 4HZCA 4KNXA 1HV9A 1KQAA 2ICYA 2WLFA 3MQGA 4R37A 2OI5A 4N6BA 3IGJA 1HM8A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1XHD A;  3GOS A;  2WLD A;  1S80 A;  2IC7 A;  2V0J A;  2WLG A;  3Q1X A;  4KPX A;  1V67 A;  3FSC A;  3IXC A;  4M2A A;  4N27 A;  3DJ4 A;  3R5C A;  3TIS A;  3ECT A;  4HCQ A;  1G95 A;  1KK4 A;  3BSS A;  4M98 A;  3T57 A;  1KK5 A;  5E3P A;  2JF2 A;  5E3Q A;  4J09 A;  3EEV A;  3BXY A;  3MQH A;  2OEF A;  3FOQ A;  2P2O A;  1KRU A;  3R5B A;  3SPT A;  3R3R A;  2OI7 A;  3D8V A;  4G3P A;  2V0I A;  1XAT A;  3BSW A;  1T3D A;  3OW5 A;  2W0W A;  1HM9 A;  5ADX V;  2V0L A;  3C8V A;  3R3I A;  4HZD A;  3VBL A;  2WLC A;  1MR7 A;  1OCX A;  1FWY A;  1QRM A;  1TDT A;  4EAB A;  4ISX A;  3TWD A;  3OTZ A;  1SSQ A;  3V4E A;  1HM0 A;  4IHF A;  4M9C A;  1YP4 A;  2TDT A;  1J2Z A;  3VNP A;  4R36 A;  1QRG A;  4IHG A;  3R8Y A;  2AQ9 A;  3DK5 A;  3KWE A;  4HUS A;  4EQY A;  3TK8 A;  2ICX A;  2OI6 A;  3FTT A;  3VBJ A;  1QQ0 A;  2NPO A;  2OEG A;  4EGG A;  3P1B A;  1THJ A;  3GVD A;  4HUR A;  4K6R A;  4H7O A;  2QIV X;  1SSM A;  2V0K A;  2RIJ A;  2Q4J A;  3R5A A;  4AAW A;  3NZ2 A;  2XAT A;  4N6A A;  3CJ8 A;  3R1W A;  4FCE A;  2GGQ A;  1KHR A;  4E1K A;  4DCL A;  3VBN A;  4E75 A;  4E6U A;  4G3Q A;  4KPZ A;  4EAA A;  2IU9 A;  5F42 A;  2I5K A;  1LXA A;  5DG3 A;  1Z90 A;  3BFP A;  5DEM A;  4G87 A;  2QIA A;  3I3X A;  1SST A;  2IUA A;  4EA9 A;  4MZU A;  2JF3 A;  1QRE A;  4N69 A;  3D98 A;  4M99 A;  3ST8 A;  4R7P A;  2VHE A;  2QKX A;  3OTM A;  4EA7 A;  1MR9 A;  3F1X A;  1YP2 A;  3TV0 A;  4M28 A;  3VBM A;  5L6S A;  5AFU U;  3VBP A;  1QRL A;  3BRK X;  3FSY A;  1V3W A;  3FSB A;  3FS8 A;  3EG4 A;  4M2B A;  2VD4 A;  4J18 A;  3FWW A;  5E3R A;  3VBK A;  2V0H A;  1KK6 A;  3EH0 A;  3KWD A;  3P47 A;  1KGQ A;  1KRR A;  2GGO A;  4AA7 A;  2WLE A;  2FKO A;  3GUE A;  3JQY A;  3I3A A;  4E6T A;  5U2K A;  3HSQ A;  3OU9 A;  3TDT A;  3MC4 A;  3HJJ A;  3KWC A;  1KRV A;  1FXJ A;  3PMO A;  3OUP A;  4MFG A;  1KGT A;  3R5D A;  4IHH A;  3VBI A;  4E79 A;  1MRL A;  4G3S A;  5L6V A;  5ADX U;  4AC3 A;  3BSY A;  3DHO A;  3SRT A;  2W0V A;  4MYO A;  5DEP A;  3TIO A;  3FSX A;  4EA8 A;  1YP3 A;  1QRF A;  4KNR A;  2IU8 A;  3R0S A;  1G97 A;  4KQL A;  5AFU V;  4HZC A;  3R2W A;  4KNX A;  1HV9 A;  1KQA A;  2ICY A;  2WLF A;  3MQG A;  4R37 A;  2OI5 A;  4N6B A;  3IGJ A;  1HM8 A; 
#chains in the Genus database with same CATH topology
 1XHD A;  3GOS A;  2WLD A;  1S80 A;  2IC7 A;  2V0J A;  2WLG A;  3Q1X A;  4KPX A;  1V67 A;  3FSC A;  3IXC A;  1EWW A;  4M2A A;  4N27 A;  1Z2F A;  3DJ4 A;  3R5C A;  3TIS A;  3ECT A;  3OH3 A;  4HCQ A;  1G95 A;  1KK4 A;  3BSS A;  4M98 A;  3T57 A;  1KK5 A;  5E3P A;  2JF2 A;  5E3Q A;  4J09 A;  3EEV A;  3BXY A;  3MQH A;  2OEF A;  3FOQ A;  2P2O A;  1KRU A;  3R5B A;  3SPT A;  3GQ8 A;  3R3R A;  2OI7 A;  3D8V A;  4G3P A;  2V0I A;  1XAT A;  3BSW A;  1T3D A;  3OW5 A;  2W0W A;  3OGZ A;  1HM9 A;  5ADX V;  2V0L A;  3SUC A;  3C8V A;  3GQ7 A;  3R3I A;  4HZD A;  3VBL A;  2WLC A;  1M8N A;  1MR7 A;  1OCX A;  1FWY A;  1QRM A;  1TDT A;  4EAB A;  4ISX A;  3TWD A;  3OTZ A;  1SSQ A;  3V4E A;  1HM0 A;  4IHF A;  4M9C A;  1YP4 A;  2TDT A;  1J2Z A;  3VNP A;  4R36 A;  1QRG A;  4IHG A;  3R8Y A;  2AQ9 A;  3DK5 A;  3KWE A;  4HUS A;  4EQY A;  3TK8 A;  2ICX A;  2OI6 A;  3FTT A;  3VBJ A;  1QQ0 A;  2NPO A;  2OEG A;  4EGG A;  3P1B A;  1THJ A;  3GVD A;  4HUR A;  4K6R A;  4H7O A;  2QIV X;  1SSM A;  2V0K A;  2RIJ A;  2Q4J A;  3R5A A;  4AAW A;  3NZ2 A;  2XAT A;  4N6A A;  3CJ8 A;  3R1W A;  4FCE A;  3OH0 A;  2GGQ A;  1KHR A;  3OH4 A;  4E1K A;  4DCL A;  3VBN A;  4E75 A;  4E6U A;  3GQA A;  4G3Q A;  4KPZ A;  4EAA A;  2IU9 A;  5F42 A;  2I5K A;  1LXA A;  5DG3 A;  1Z90 A;  3BFP A;  5DEM A;  4G87 A;  2QIA A;  3I3X A;  1SST A;  2IUA A;  3GQ9 A;  4EA9 A;  4MZU A;  2JF3 A;  1QRE A;  4N69 A;  3D98 A;  4M99 A;  3ST8 A;  4R7P A;  2VHE A;  2QKX A;  3OTM A;  4EA7 A;  1MR9 A;  3F1X A;  1YP2 A;  3TV0 A;  4M28 A;  3VBM A;  5L6S A;  5AFU U;  3VBP A;  1QRL A;  3BRK X;  3FSY A;  1V3W A;  3FSB A;  3FS8 A;  3EG4 A;  4M2B A;  2VD4 A;  4J18 A;  3FWW A;  5E3R A;  3VBK A;  2V0H A;  1KK6 A;  3EH0 A;  3KWD A;  3P47 A;  1KGQ A;  1KRR A;  2GGO A;  4AA7 A;  2WLE A;  2FKO A;  3GUE A;  3JQY A;  3I3A A;  4E6T A;  5U2K A;  3HSQ A;  3OU9 A;  3TDT A;  3MC4 A;  3HJJ A;  3KWC A;  3OH1 A;  1KRV A;  1FXJ A;  3PMO A;  3OUP A;  4MFG A;  1KGT A;  3R5D A;  4IHH A;  3VBI A;  4E79 A;  1MRL A;  4G3S A;  1L0S A;  5L6V A;  5ADX U;  4AC3 A;  3BSY A;  3DHO A;  3SRT A;  2W0V A;  4MYO A;  5DEP A;  1N4I A;  3TIO A;  3FSX A;  4EA8 A;  1YP3 A;  1QRF A;  4KNR A;  2IU8 A;  3R0S A;  1G97 A;  4KQL A;  5AFU V;  3OH2 A;  3R2W A;  4HZC A;  4KNX A;  1HV9 A;  1KQA A;  2ICY A;  2WLF A;  3MQG A;  4R37 A;  2OI5 A;  4N6B A;  3IGJ A;  1HM8 A; 
#chains in the Genus database with same CATH homology
 1XHD A;  3GOS A;  2WLD A;  1S80 A;  2IC7 A;  2V0J A;  2WLG A;  3Q1X A;  4KPX A;  1V67 A;  3FSC A;  3IXC A;  4M2A A;  4N27 A;  3DJ4 A;  3R5C A;  3TIS A;  3ECT A;  4HCQ A;  1G95 A;  1KK4 A;  3BSS A;  4M98 A;  3T57 A;  1KK5 A;  5E3P A;  2JF2 A;  5E3Q A;  4J09 A;  3EEV A;  3BXY A;  3MQH A;  2OEF A;  3FOQ A;  2P2O A;  1KRU A;  3R5B A;  3SPT A;  3R3R A;  2OI7 A;  3D8V A;  4G3P A;  2V0I A;  1XAT A;  3BSW A;  1T3D A;  3OW5 A;  2W0W A;  1HM9 A;  5ADX V;  2V0L A;  3C8V A;  3R3I A;  4HZD A;  3VBL A;  2WLC A;  1MR7 A;  1OCX A;  1FWY A;  1QRM A;  1TDT A;  4EAB A;  4ISX A;  3TWD A;  3OTZ A;  1SSQ A;  3V4E A;  1HM0 A;  4IHF A;  4M9C A;  1YP4 A;  2TDT A;  1J2Z A;  3VNP A;  4R36 A;  1QRG A;  4IHG A;  3R8Y A;  2AQ9 A;  3DK5 A;  3KWE A;  4HUS A;  4EQY A;  3TK8 A;  2ICX A;  2OI6 A;  3FTT A;  3VBJ A;  1QQ0 A;  2NPO A;  2OEG A;  4EGG A;  3P1B A;  1THJ A;  3GVD A;  4HUR A;  4K6R A;  4H7O A;  2QIV X;  1SSM A;  2V0K A;  2RIJ A;  2Q4J A;  3R5A A;  4AAW A;  3NZ2 A;  2XAT A;  4N6A A;  3CJ8 A;  3R1W A;  4FCE A;  2GGQ A;  1KHR A;  4E1K A;  4DCL A;  3VBN A;  4E75 A;  4E6U A;  4G3Q A;  4KPZ A;  4EAA A;  2IU9 A;  5F42 A;  2I5K A;  1LXA A;  5DG3 A;  1Z90 A;  3BFP A;  5DEM A;  4G87 A;  2QIA A;  3I3X A;  1SST A;  2IUA A;  4EA9 A;  4MZU A;  2JF3 A;  1QRE A;  4N69 A;  3D98 A;  4M99 A;  3ST8 A;  4R7P A;  2VHE A;  2QKX A;  3OTM A;  4EA7 A;  1MR9 A;  3F1X A;  1YP2 A;  3TV0 A;  4M28 A;  3VBM A;  5L6S A;  5AFU U;  3VBP A;  1QRL A;  3BRK X;  3FSY A;  1V3W A;  3FSB A;  3FS8 A;  3EG4 A;  4M2B A;  2VD4 A;  4J18 A;  3FWW A;  5E3R A;  3VBK A;  2V0H A;  1KK6 A;  3EH0 A;  3KWD A;  3P47 A;  1KGQ A;  1KRR A;  2GGO A;  4AA7 A;  2WLE A;  2FKO A;  3GUE A;  3JQY A;  3I3A A;  4E6T A;  5U2K A;  3HSQ A;  3OU9 A;  3TDT A;  3MC4 A;  3HJJ A;  3KWC A;  1KRV A;  1FXJ A;  3PMO A;  3OUP A;  4MFG A;  1KGT A;  3R5D A;  4IHH A;  3VBI A;  4E79 A;  1MRL A;  4G3S A;  5L6V A;  5ADX U;  4AC3 A;  3BSY A;  3DHO A;  3SRT A;  2W0V A;  4MYO A;  5DEP A;  3TIO A;  3FSX A;  4EA8 A;  1YP3 A;  1QRF A;  4KNR A;  2IU8 A;  3R0S A;  1G97 A;  4KQL A;  5AFU V;  4HZC A;  3R2W A;  4KNX A;  1HV9 A;  1KQA A;  2ICY A;  2WLF A;  3MQG A;  4R37 A;  2OI5 A;  4N6B A;  3IGJ A;  1HM8 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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5DEPA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations