5DG3 | Genus

Total Genus 103

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	103
sequence length	256
structure length	256
Chain Sequence	LIDPRAIIDPSARLAADVQVGPWSIVGAEVEIGEGTVIGPHVVLKGPTKIGKHNRIYQFSSVGEDTPDLKYKGEPTRLVIGDHNVIREGVTIHRGTVQDRAETTIGDHNLIMAYAHIGHDSVIGNHCILVNNTALAGHVHVDDWAILSGYTLVHQYCRIGAHSFSGMGSAIGKDVPAYVTVFGNPAEARSMNFEGMRRRGFSSEAIHALRRAYKVVYRQGHTVEEALAELAESAAQFPEVAVFRDSIQSATRGITR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Pseudomonas aeruginosa (strain pa7)
publication title	Structures of Pseudomonas aeruginosa LpxA Reveal the Basis for Its Substrate Selectivity. pubmed doi rcsb
molecule keywords	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acylt
total genus	103
structure length	256
sequence length	256
chains with identical sequence	B, C, D, E, F
ec nomenclature	ec 2.3.1.129: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase.
pdb deposition date	2015-08-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00132	Hexapep	Bacterial transferase hexapeptide (six repeats)
A	PF13720	Acetyltransf_11	Udp N-acetylglucosamine O-acyltransferase; Domain 2

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1180.10	Mainly Alpha	Up-down Bundle	Udp N-acetylglucosamine O-acyltransferase; Domain 2	Udp N-acetylglucosamine O-acyltransferase, C-terminal domain	5dg3A02
2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase; domain 1	Hexapeptide repeat proteins	5dg3A01

1G97A 3P47A 2GGQA 3TK8A 2NPOA 4E6UA 3R1WA 1SSMA 3GVDA 3V4EA 2W0WA 3Q1XA 3FSYA 5AFUV 2V0IA 3SRTA 3I3XA 1QQ0A 4E75A 4HURA 2OEGA 2QIVX 2Q4JA 2WLGA 3R5CA 3HSQA 3D98A 4N69A 1MR7A 4R37A 3VBMA 3VBJA 4EA8A 3EH0A 3VNPA 5E3RA 4DCLA 3BFPA 5DEPA 4EA9A 5ADXU 2WLFA 5F42A 4MZUA 5E3QA 2GGOA 1FXJA 3OTZA 1KGQA 1S80A 3KWDA 4R36A 1KRUA 5U2KA 2OI5A 5L6VA 1YP4A 3VBPA 1HM9A 3FS8A 3DJ4A 4AAWA 1V3WA 2IU8A 3CJ8A 4HZDA 2W0VA 4EABA 3TV0A 1G95A 4EAAA 1Z90A 1J2ZA 4HCQA 3OUPA 3OTMA 4N6AA 2QKXA 1V67A 3BSWA 3FWWA 4EQYA 1XATA 3F1XA 5L6SA 1KHRA 3OW5A 2FKOA 2WLEA 3NZ2A 4K6RA 2OI6A 2WLCA 1QRMA 3EEVA 3IGJA 1TDTA 3MQGA 4ISXA 4N6BA 1MRLA 3R3IA 4HUSA 3IXCA 3EG4A 4MFGA 3BRKX 2XATA 1SSTA 2WLDA 3TISA 2I5KA 4G3PA 4N27A 3FTTA 3I3AA 2ICYA 1KRVA 3BSYA 4M98A 4KPZA 4J09A 1QRFA 4IHHA 3R8YA 2JF2A 1HM8A 3GOSA 1KK4A 3VBLA 2V0LA 1YP3A 4G87A 4M9CA 1KGTA 1MR9A 3DK5A 4HZCA 2OEFA 4IHGA 2RIJA 2JF3A 2V0JA 3PMOA 3ECTA 3FSCA 4KPXA 1OCXA 3VBKA 2ICXA 3R5AA 3FSXA 3BSSA 3KWEA 4H7OA 4AA7A 3ST8A 1YP2A 3HJJA 4M28A 1XHDA 5ADXV 4G3QA 4G3SA 1KK6A 1QRGA 1KQAA 5DG3A 3T57A 4KQLA 3R2WA 4MYOA 1QRLA 3MQHA 4KNRA 2IU9A 3DHOA 5E3PA 4J18A 3FOQA 4R7PA 1KK5A 5AFUU 1LXAA 1THJA 1SSQA 4E6TA 2P2OA 4M99A 3R5DA 4EGGA 3VBNA 2VHEA 3C8VA 4EA7A 2QIAA 3GUEA 4E79A 2OI7A 3TIOA 3MC4A 2V0HA 3SPTA 3R0SA 4FCEA 3VBIA 1QREA 2IUAA 2AQ9A 3OU9A 1HV9A 3TDTA 3KWCA 2VD4A 4E1KA 3R3RA 1HM0A 3BXYA 3P1BA 3TWDA 4KNXA 2TDTA 3FSBA 4IHFA 5DEMA 2V0KA 1T3DA 3R5BA 4M2AA 3JQYA 2IC7A 4AC3A 4M2BA 3D8VA 1KRRA 1FWYA
chains in the Genus database with same CATH superfamily

1G97A 3P47A 2GGQA 3TK8A 2NPOA 4E6UA 3R1WA 1SSMA 3GVDA 3V4EA 2W0WA 3Q1XA 3FSYA 3SUCA 5AFUV 2V0IA 3SRTA 3I3XA 1QQ0A 4E75A 1M8NA 4HURA 2OEGA 2QIVX 2Q4JA 3GQ8A 2WLGA 3OGZA 3R5CA 3HSQA 3D98A 4N69A 1MR7A 4R37A 3VBMA 3VBJA 4EA8A 3EH0A 3VNPA 5E3RA 4DCLA 3BFPA 5DEPA 4EA9A 5ADXU 2WLFA 5F42A 4MZUA 5E3QA 2GGOA 1FXJA 3OTZA 1KGQA 1S80A 3KWDA 4R36A 1KRUA 5U2KA 2OI5A 5L6VA 1YP4A 3VBPA 3OH3A 1HM9A 3FS8A 3DJ4A 3OH0A 1V3WA 2IU8A 3CJ8A 4HZDA 2W0VA 4AAWA 4EABA 1G95A 4EAAA 1Z90A 1J2ZA 4HCQA 3OUPA 3OTMA 4N6AA 2QKXA 1V67A 3BSWA 3FWWA 4EQYA 1XATA 3F1XA 5L6SA 1KHRA 3OW5A 2FKOA 2WLEA 3NZ2A 4K6RA 2OI6A 2WLCA 1QRMA 3EEVA 3IGJA 1TDTA 3MQGA 4ISXA 4N6BA 1MRLA 3R3IA 4HUSA 3IXCA 3EG4A 4MFGA 3BRKX 2XATA 1SSTA 2WLDA 3TISA 2I5KA 4G3PA 4N27A 3FTTA 3I3AA 2ICYA 1KRVA 3BSYA 4M98A 4KPZA 4J09A 1QRFA 4IHHA 3R8YA 2JF2A 1HM8A 3GOSA 1KK4A 3VBLA 2V0LA 1YP3A 4G87A 4M9CA 1KGTA 1MR9A 3OH2A 1N4IA 3DK5A 4HZCA 2OEFA 4IHGA 3GQ9A 2RIJA 2JF3A 2V0JA 3PMOA 3ECTA 3FSCA 4KPXA 1OCXA 3VBKA 2ICXA 3R5AA 3FSXA 3BSSA 3KWEA 4H7OA 4AA7A 3ST8A 1YP2A 3HJJA 4M28A 1XHDA 5ADXV 4G3QA 4G3SA 1KK6A 1QRGA 1KQAA 5DG3A 3T57A 4KQLA 3R2WA 1EWWA 4MYOA 1QRLA 3MQHA 4KNRA 2IU9A 3DHOA 5E3PA 4J18A 3FOQA 4R7PA 1KK5A 5AFUU 3GQ7A 1LXAA 1L0SA 3GQAA 1THJA 1SSQA 4E6TA 2P2OA 3TV0A 4M99A 3R5DA 4EGGA 3VBNA 2VHEA 3C8VA 4EA7A 2QIAA 3OH1A 3GUEA 4E79A 2OI7A 3TIOA 3MC4A 2V0HA 3SPTA 3R0SA 4FCEA 3VBIA 1QREA 2IUAA 2AQ9A 3OU9A 1HV9A 3TDTA 3KWCA 2VD4A 3OH4A 4E1KA 3R3RA 1HM0A 3BXYA 3P1BA 3TWDA 4KNXA 2TDTA 3FSBA 4IHFA 5DEMA 2V0KA 1T3DA 3R5BA 4M2AA 3JQYA 2IC7A 4AC3A 4M2BA 1Z2FA 3D8VA 1KRRA 1FWYA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1G97 A;  3P47 A;  2GGQ A;  3TK8 A;  2NPO A;  4E6U A;  3R1W A;  1SSM A;  3GVD A;  3V4E A;  2W0W A;  3Q1X A;  3FSY A;  5AFU V;  2V0I A;  3SRT A;  3I3X A;  1QQ0 A;  4E75 A;  4HUR A;  2OEG A;  2QIV X;  2Q4J A;  2WLG A;  3R5C A;  3HSQ A;  3D98 A;  4N69 A;  1MR7 A;  4R37 A;  3VBM A;  3VBJ A;  4EA8 A;  3EH0 A;  3VNP A;  5E3R A;  4DCL A;  3BFP A;  5DEP A;  4EA9 A;  5ADX U;  2WLF A;  5F42 A;  4MZU A;  5E3Q A;  2GGO A;  1FXJ A;  3OTZ A;  1KGQ A;  1S80 A;  3KWD A;  4R36 A;  1KRU A;  5U2K A;  2OI5 A;  5L6V A;  1YP4 A;  3VBP A;  1HM9 A;  3FS8 A;  3DJ4 A;  4AAW A;  1V3W A;  2IU8 A;  3CJ8 A;  4HZD A;  2W0V A;  4EAB A;  3TV0 A;  1G95 A;  4EAA A;  1Z90 A;  1J2Z A;  4HCQ A;  3OUP A;  3OTM A;  4N6A A;  2QKX A;  1V67 A;  3BSW A;  3FWW A;  4EQY A;  1XAT A;  3F1X A;  5L6S A;  1KHR A;  3OW5 A;  2FKO A;  2WLE A;  3NZ2 A;  4K6R A;  2OI6 A;  2WLC A;  1QRM A;  3EEV A;  3IGJ A;  1TDT A;  3MQG A;  4ISX A;  4N6B A;  1MRL A;  3R3I A;  4HUS A;  3IXC A;  3EG4 A;  4MFG A;  3BRK X;  2XAT A;  1SST A;  2WLD A;  3TIS A;  2I5K A;  4G3P A;  4N27 A;  3FTT A;  3I3A A;  2ICY A;  1KRV A;  3BSY A;  4M98 A;  4KPZ A;  4J09 A;  1QRF A;  4IHH A;  3R8Y A;  2JF2 A;  1HM8 A;  3GOS A;  1KK4 A;  3VBL A;  2V0L A;  1YP3 A;  4G87 A;  4M9C A;  1KGT A;  1MR9 A;  3DK5 A;  4HZC A;  2OEF A;  4IHG A;  2RIJ A;  2JF3 A;  2V0J A;  3PMO A;  3ECT A;  3FSC A;  4KPX A;  1OCX A;  3VBK A;  2ICX A;  3R5A A;  3FSX A;  3BSS A;  3KWE A;  4H7O A;  4AA7 A;  3ST8 A;  1YP2 A;  3HJJ A;  4M28 A;  1XHD A;  5ADX V;  4G3Q A;  4G3S A;  1KK6 A;  1QRG A;  1KQA A;  5DG3 A;  3T57 A;  4KQL A;  3R2W A;  4MYO A;  1QRL A;  3MQH A;  4KNR A;  2IU9 A;  3DHO A;  5E3P A;  4J18 A;  3FOQ A;  4R7P A;  1KK5 A;  5AFU U;  1LXA A;  1THJ A;  1SSQ A;  4E6T A;  2P2O A;  4M99 A;  3R5D A;  4EGG A;  3VBN A;  2VHE A;  3C8V A;  4EA7 A;  2QIA A;  3GUE A;  4E79 A;  2OI7 A;  3TIO A;  3MC4 A;  2V0H A;  3SPT A;  3R0S A;  4FCE A;  3VBI A;  1QRE A;  2IUA A;  2AQ9 A;  3OU9 A;  1HV9 A;  3TDT A;  3KWC A;  2VD4 A;  4E1K A;  3R3R A;  1HM0 A;  3BXY A;  3P1B A;  3TWD A;  4KNX A;  2TDT A;  3FSB A;  4IHF A;  5DEM A;  2V0K A;  1T3D A;  3R5B A;  4M2A A;  3JQY A;  2IC7 A;  4AC3 A;  4M2B A;  3D8V A;  1KRR A;  1FWY A; 
#chains in the Genus database with same CATH topology
 1G97 A;  3P47 A;  2GGQ A;  3TK8 A;  2NPO A;  4E6U A;  3R1W A;  1SSM A;  3GVD A;  3V4E A;  2W0W A;  3Q1X A;  3FSY A;  3SUC A;  5AFU V;  2V0I A;  3SRT A;  3I3X A;  1QQ0 A;  4E75 A;  1M8N A;  4HUR A;  2OEG A;  2QIV X;  2Q4J A;  3GQ8 A;  2WLG A;  3OGZ A;  3R5C A;  3HSQ A;  3D98 A;  4N69 A;  1MR7 A;  4R37 A;  3VBM A;  3VBJ A;  4EA8 A;  3EH0 A;  3VNP A;  5E3R A;  4DCL A;  3BFP A;  5DEP A;  4EA9 A;  5ADX U;  2WLF A;  5F42 A;  4MZU A;  5E3Q A;  2GGO A;  1FXJ A;  3OTZ A;  1KGQ A;  1S80 A;  3KWD A;  4R36 A;  1KRU A;  5U2K A;  2OI5 A;  5L6V A;  1YP4 A;  3VBP A;  3OH3 A;  1HM9 A;  3FS8 A;  3DJ4 A;  3OH0 A;  1V3W A;  2IU8 A;  3CJ8 A;  4HZD A;  2W0V A;  4AAW A;  4EAB A;  1G95 A;  4EAA A;  1Z90 A;  1J2Z A;  4HCQ A;  3OUP A;  3OTM A;  4N6A A;  2QKX A;  1V67 A;  3BSW A;  3FWW A;  4EQY A;  1XAT A;  3F1X A;  5L6S A;  1KHR A;  3OW5 A;  2FKO A;  2WLE A;  3NZ2 A;  4K6R A;  2OI6 A;  2WLC A;  1QRM A;  3EEV A;  3IGJ A;  1TDT A;  3MQG A;  4ISX A;  4N6B A;  1MRL A;  3R3I A;  4HUS A;  3IXC A;  3EG4 A;  4MFG A;  3BRK X;  2XAT A;  1SST A;  2WLD A;  3TIS A;  2I5K A;  4G3P A;  4N27 A;  3FTT A;  3I3A A;  2ICY A;  1KRV A;  3BSY A;  4M98 A;  4KPZ A;  4J09 A;  1QRF A;  4IHH A;  3R8Y A;  2JF2 A;  1HM8 A;  3GOS A;  1KK4 A;  3VBL A;  2V0L A;  1YP3 A;  4G87 A;  4M9C A;  1KGT A;  1MR9 A;  3OH2 A;  1N4I A;  3DK5 A;  4HZC A;  2OEF A;  4IHG A;  3GQ9 A;  2RIJ A;  2JF3 A;  2V0J A;  3PMO A;  3ECT A;  3FSC A;  4KPX A;  1OCX A;  3VBK A;  2ICX A;  3R5A A;  3FSX A;  3BSS A;  3KWE A;  4H7O A;  4AA7 A;  3ST8 A;  1YP2 A;  3HJJ A;  4M28 A;  1XHD A;  5ADX V;  4G3Q A;  4G3S A;  1KK6 A;  1QRG A;  1KQA A;  5DG3 A;  3T57 A;  4KQL A;  3R2W A;  1EWW A;  4MYO A;  1QRL A;  3MQH A;  4KNR A;  2IU9 A;  3DHO A;  5E3P A;  4J18 A;  3FOQ A;  4R7P A;  1KK5 A;  5AFU U;  3GQ7 A;  1LXA A;  1L0S A;  3GQA A;  1THJ A;  1SSQ A;  4E6T A;  2P2O A;  3TV0 A;  4M99 A;  3R5D A;  4EGG A;  3VBN A;  2VHE A;  3C8V A;  4EA7 A;  2QIA A;  3OH1 A;  3GUE A;  4E79 A;  2OI7 A;  3TIO A;  3MC4 A;  2V0H A;  3SPT A;  3R0S A;  4FCE A;  3VBI A;  1QRE A;  2IUA A;  2AQ9 A;  3OU9 A;  1HV9 A;  3TDT A;  3KWC A;  2VD4 A;  3OH4 A;  4E1K A;  3R3R A;  1HM0 A;  3BXY A;  3P1B A;  3TWD A;  4KNX A;  2TDT A;  3FSB A;  4IHF A;  5DEM A;  2V0K A;  1T3D A;  3R5B A;  4M2A A;  3JQY A;  2IC7 A;  4AC3 A;  4M2B A;  1Z2F A;  3D8V A;  1KRR A;  1FWY A; 
#chains in the Genus database with same CATH homology
 1G97 A;  3P47 A;  2GGQ A;  3TK8 A;  2NPO A;  4E6U A;  3R1W A;  1SSM A;  3GVD A;  3V4E A;  2W0W A;  3Q1X A;  3FSY A;  5AFU V;  2V0I A;  3SRT A;  3I3X A;  1QQ0 A;  4E75 A;  4HUR A;  2OEG A;  2QIV X;  2Q4J A;  2WLG A;  3R5C A;  3HSQ A;  3D98 A;  4N69 A;  1MR7 A;  4R37 A;  3VBM A;  3VBJ A;  4EA8 A;  3EH0 A;  3VNP A;  5E3R A;  4DCL A;  3BFP A;  5DEP A;  4EA9 A;  5ADX U;  2WLF A;  5F42 A;  4MZU A;  5E3Q A;  2GGO A;  1FXJ A;  3OTZ A;  1KGQ A;  1S80 A;  3KWD A;  4R36 A;  1KRU A;  5U2K A;  2OI5 A;  5L6V A;  1YP4 A;  3VBP A;  1HM9 A;  3FS8 A;  3DJ4 A;  4AAW A;  1V3W A;  2IU8 A;  3CJ8 A;  4HZD A;  2W0V A;  4EAB A;  3TV0 A;  1G95 A;  4EAA A;  1Z90 A;  1J2Z A;  4HCQ A;  3OUP A;  3OTM A;  4N6A A;  2QKX A;  1V67 A;  3BSW A;  3FWW A;  4EQY A;  1XAT A;  3F1X A;  5L6S A;  1KHR A;  3OW5 A;  2FKO A;  2WLE A;  3NZ2 A;  4K6R A;  2OI6 A;  2WLC A;  1QRM A;  3EEV A;  3IGJ A;  1TDT A;  3MQG A;  4ISX A;  4N6B A;  1MRL A;  3R3I A;  4HUS A;  3IXC A;  3EG4 A;  4MFG A;  3BRK X;  2XAT A;  1SST A;  2WLD A;  3TIS A;  2I5K A;  4G3P A;  4N27 A;  3FTT A;  3I3A A;  2ICY A;  1KRV A;  3BSY A;  4M98 A;  4KPZ A;  4J09 A;  1QRF A;  4IHH A;  3R8Y A;  2JF2 A;  1HM8 A;  3GOS A;  1KK4 A;  3VBL A;  2V0L A;  1YP3 A;  4G87 A;  4M9C A;  1KGT A;  1MR9 A;  3DK5 A;  4HZC A;  2OEF A;  4IHG A;  2RIJ A;  2JF3 A;  2V0J A;  3PMO A;  3ECT A;  3FSC A;  4KPX A;  1OCX A;  3VBK A;  2ICX A;  3R5A A;  3FSX A;  3BSS A;  3KWE A;  4H7O A;  4AA7 A;  3ST8 A;  1YP2 A;  3HJJ A;  4M28 A;  1XHD A;  5ADX V;  4G3Q A;  4G3S A;  1KK6 A;  1QRG A;  1KQA A;  5DG3 A;  3T57 A;  4KQL A;  3R2W A;  4MYO A;  1QRL A;  3MQH A;  4KNR A;  2IU9 A;  3DHO A;  5E3P A;  4J18 A;  3FOQ A;  4R7P A;  1KK5 A;  5AFU U;  1LXA A;  1THJ A;  1SSQ A;  4E6T A;  2P2O A;  4M99 A;  3R5D A;  4EGG A;  3VBN A;  2VHE A;  3C8V A;  4EA7 A;  2QIA A;  3GUE A;  4E79 A;  2OI7 A;  3TIO A;  3MC4 A;  2V0H A;  3SPT A;  3R0S A;  4FCE A;  3VBI A;  1QRE A;  2IUA A;  2AQ9 A;  3OU9 A;  1HV9 A;  3TDT A;  3KWC A;  2VD4 A;  4E1K A;  3R3R A;  1HM0 A;  3BXY A;  3P1B A;  3TWD A;  4KNX A;  2TDT A;  3FSB A;  4IHF A;  5DEM A;  2V0K A;  1T3D A;  3R5B A;  4M2A A;  3JQY A;  2IC7 A;  4AC3 A;  4M2B A;  3D8V A;  1KRR A;  1FWY A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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5DG3A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations