1BW3A

Three-dimensional structure in solution of barwin, a protein from barley seed
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
125
structure length
125
Chain Sequence
EQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lectin
molecule keywords BARWIN, BASIC BARLEY SEED PROTEIN
publication title Three-dimensional structure in solution of barwin, a protein from barley seed.
pubmed doi rcsb
source organism Hordeum vulgare
total genus 22
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 1992-07-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00967 Barwin Barwin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 1bw3A00
2KQAA 4JP6A 3D30A 2G6GA 3X2PA 4FG4A 1WC2A 3SUJA 4AVRA 2BH0A 3X2MA 3X2NA 4JCWA 4ZM7A 5H4UA 3CZBA 4JS7A 5GLYA 2GAEA 3SUKA 4FERA 4FFTA 2AE0X 2PICA 2PNWA 2PJJA 2ENGA 1L8FA 4FG2A 4JJOA 3X2HA 3X2OA 1BW4A 1BW3A 1OA7A 2PI8A 3SULA 5GLXA 3X2KA 4ENGA 3X2JA 1OA9A 3X2IA 4L48A 3X2GA 3X2LA 3SUMA 2HCZX 3ENGA 4JP7A 3M3GA 2G5DA 1N10A 5GM9A 1HD5A
chains in the Genus database with same CATH superfamily
2E2HA 3CF2A 1QDNA 2VPWA 2E7ZA 2NAPA 1E61A 4ZM7A 4RV0A 1WCMA 5T5MD 3CZBA 1R9TA 3GTMA 2NVXA 2JA5A 4FERA 1CZ4A 2A69D 4AZDA 1G8JA 3IR6A 1DMRA 3GTOA 2R92A 4JJOA 1BW3A 3ML1A 4CS0A 1Y1WA 1FDOA 2JIQA 2VPXA 1I50A 5GLXA 3X2KA 1OA9A 1VC3B 4KODA 2C45A 3X2IA 3CQZA 1TWCA 4QIWA 3GTPA 1YLEA 1YNJD 1K83A 5DYGA 1S3SA 4NOHA 1PQEA 4KDIA 4C2MA 1PPYA 4JP6A 2G6GA 3X2PA 1E18A 1AA6A 2B63A 2R7ZA 3QQ7A 2V3VA 5T5ID 3GTLA 1PQHA 1OGYA 2JIOA 1Y4ZA 1ZC1A 5GLYA 1AW8B 3O5AA 2WAQA 4GA6A 2JA6A 2PJJA 1WLFA 4FG2A 3X2HA 5DYIA 3HKZA 4KO8A 1E5VA 4AAYA 2A6HD 1KQGA 2A68D 3SULA 1E32A 4CRYG 1PQFA 2VUMA 4L48A 3X2LA 2HCZX 4AYBA 1FDIA 3M3GA 1EU1A 5FTNA 2KI8A 4AONB 2DMRA 2BE5D 1HD5A 2KQAA 2YUJA 1TWFA 2JA7A 4KDLA 1R27A 4FG4A 1WC2A 3QC8A 4AVRA 5B6CA 1H5NA 3HU3A 4JCWA 2IV2X 5H4UA 4JS7A 5FTMA 3HU2A 3PLXB 4DMRA 5C18A 5FTJA 2R93A 2VPZA 1TWHA 2AE0X 2VPYA 1TWAA 2PICA 2V45A 2PNWA 2ENGA 3QQ8A 3GTGA 1PYUB 1TMOA 2O5JD 1TWGA 1H0HA 1OA7A 3TIWA 3GTJA 2E2IA 3FKIA 1G8KA 1I3QA 1SMYD 3GTQA 2JIRA 1SIWA 3X2GA 4CRZA 3GTKA 4D7ZB 2EEOB 3SUMA 4JP7A 4KLNA 3IR5A 1UHEA 2A6ED 2G5DA 1N10A 5FTLA 5GM9A 3TM7B 3QWZA 1PYQA 1IW7D 1UHDA 2PJHB 3D30A 1R7RA 1Y5IA 3DMRA 2CW0D 3IR7A 1YNND 5EPPA 3SUJA 2BH0A 1E60A 3X2NA 2WB1A 3X2MA 1QCSA 2PMZA 2GAEA 1PT0A 3SUKA 2NYAA 2YU9A 4FFTA 1KQFA 1SFOA 5C1BA 1L8FA 1BW4A 3X2OA 1DMSA 3OUGA 2JIMA 1ZYRD 5FTKA 3HU1A 2PI8A 1Q16A 1PT1A 2Y0SA 5GLFA 4ENGA 3X2JA 1CR5A 2JIPA 1CZ5A 4GA5A 4AOKB 3ENGA 2NVYA 3H0GA 1Y1VA
chains in the Genus database with same CATH topology
2KQAA 4JP6A 3D30A 2G6GA 3X2PA 4FG4A 1WC2A 3SUJA 4AVRA 2BH0A 3X2MA 3X2NA 4JCWA 4ZM7A 5H4UA 3CZBA 4JS7A 5GLYA 2GAEA 3SUKA 4FERA 4FFTA 2AE0X 2PICA 2PNWA 2PJJA 2ENGA 1L8FA 4FG2A 4JJOA 3X2HA 3X2OA 1BW4A 1BW3A 1OA7A 2PI8A 3SULA 5GLXA 3X2KA 4ENGA 3X2JA 1OA9A 3X2IA 4L48A 3X2GA 3X2LA 3SUMA 2HCZX 3ENGA 4JP7A 3M3GA 2G5DA 1N10A 5GM9A 1HD5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KQA A;  4JP6 A;  3D30 A;  2G6G A;  3X2P A;  4FG4 A;  1WC2 A;  3SUJ A;  4AVR A;  2BH0 A;  3X2M A;  3X2N A;  4JCW A;  4ZM7 A;  5H4U A;  3CZB A;  4JS7 A;  5GLY A;  2GAE A;  3SUK A;  4FER A;  4FFT A;  2AE0 X;  2PIC A;  2PNW A;  2PJJ A;  2ENG A;  1L8F A;  4FG2 A;  4JJO A;  3X2H A;  3X2O A;  1BW4 A;  1BW3 A;  1OA7 A;  2PI8 A;  3SUL A;  5GLX A;  3X2K A;  4ENG A;  3X2J A;  1OA9 A;  3X2I A;  4L48 A;  3X2G A;  3X2L A;  3SUM A;  2HCZ X;  3ENG A;  4JP7 A;  3M3G A;  2G5D A;  1N10 A;  5GM9 A;  1HD5 A; 
#chains in the Genus database with same CATH topology
 2E2H A;  3CF2 A;  1QDN A;  2VPW A;  2E7Z A;  2NAP A;  1E61 A;  4ZM7 A;  4RV0 A;  1WCM A;  5T5M D;  3CZB A;  1R9T A;  3GTM A;  2NVX A;  2JA5 A;  4FER A;  1CZ4 A;  2A69 D;  4AZD A;  1G8J A;  3IR6 A;  1DMR A;  3GTO A;  2R92 A;  4JJO A;  1BW3 A;  3ML1 A;  4CS0 A;  1Y1W A;  1FDO A;  2JIQ A;  2VPX A;  1I50 A;  5GLX A;  3X2K A;  1OA9 A;  1VC3 B;  4KOD A;  2C45 A;  3X2I A;  3CQZ A;  1TWC A;  4QIW A;  3GTP A;  1YLE A;  1YNJ D;  1K83 A;  5DYG A;  1S3S A;  4NOH A;  1PQE A;  4KDI A;  4C2M A;  1PPY A;  4JP6 A;  2G6G A;  3X2P A;  1E18 A;  1AA6 A;  2B63 A;  2R7Z A;  3QQ7 A;  2V3V A;  5T5I D;  3GTL A;  1PQH A;  1OGY A;  2JIO A;  1Y4Z A;  1ZC1 A;  5GLY A;  1AW8 B;  3O5A A;  2WAQ A;  4GA6 A;  2JA6 A;  2PJJ A;  1WLF A;  4FG2 A;  3X2H A;  5DYI A;  3HKZ A;  4KO8 A;  1E5V A;  4AAY A;  2A6H D;  1KQG A;  2A68 D;  3SUL A;  1E32 A;  4CRY G;  1PQF A;  2VUM A;  4L48 A;  3X2L A;  2HCZ X;  4AYB A;  1FDI A;  3M3G A;  1EU1 A;  5FTN A;  2KI8 A;  4AON B;  2DMR A;  2BE5 D;  1HD5 A;  2KQA A;  2YUJ A;  1TWF A;  2JA7 A;  4KDL A;  1R27 A;  4FG4 A;  1WC2 A;  3QC8 A;  4AVR A;  5B6C A;  1H5N A;  3HU3 A;  4JCW A;  2IV2 X;  5H4U A;  4JS7 A;  5FTM A;  3HU2 A;  3PLX B;  4DMR A;  5C18 A;  5FTJ A;  2R93 A;  2VPZ A;  1TWH A;  2AE0 X;  2VPY A;  1TWA A;  2PIC A;  2V45 A;  2PNW A;  2ENG A;  3QQ8 A;  3GTG A;  1PYU B;  1TMO A;  2O5J D;  1TWG A;  1H0H A;  1OA7 A;  3TIW A;  3GTJ A;  2E2I A;  3FKI A;  1G8K A;  1I3Q A;  1SMY D;  3GTQ A;  2JIR A;  1SIW A;  3X2G A;  4CRZ A;  3GTK A;  4D7Z B;  2EEO B;  3SUM A;  4JP7 A;  4KLN A;  3IR5 A;  1UHE A;  2A6E D;  2G5D A;  1N10 A;  5FTL A;  5GM9 A;  3TM7 B;  3QWZ A;  1PYQ A;  1IW7 D;  1UHD A;  2PJH B;  3D30 A;  1R7R A;  1Y5I A;  3DMR A;  2CW0 D;  3IR7 A;  1YNN D;  5EPP A;  3SUJ A;  2BH0 A;  1E60 A;  3X2N A;  2WB1 A;  3X2M A;  1QCS A;  2PMZ A;  2GAE A;  1PT0 A;  3SUK A;  2NYA A;  2YU9 A;  4FFT A;  1KQF A;  1SFO A;  5C1B A;  1L8F A;  1BW4 A;  3X2O A;  1DMS A;  3OUG A;  2JIM A;  1ZYR D;  5FTK A;  3HU1 A;  2PI8 A;  1Q16 A;  1PT1 A;  2Y0S A;  5GLF A;  4ENG A;  3X2J A;  1CR5 A;  2JIP A;  1CZ5 A;  4GA5 A;  4AOK B;  3ENG A;  2NVY A;  3H0G A;  1Y1V A; 
#chains in the Genus database with same CATH homology
 2KQA A;  4JP6 A;  3D30 A;  2G6G A;  3X2P A;  4FG4 A;  1WC2 A;  3SUJ A;  4AVR A;  2BH0 A;  3X2M A;  3X2N A;  4JCW A;  4ZM7 A;  5H4U A;  3CZB A;  4JS7 A;  5GLY A;  2GAE A;  3SUK A;  4FER A;  4FFT A;  2AE0 X;  2PIC A;  2PNW A;  2PJJ A;  2ENG A;  1L8F A;  4FG2 A;  4JJO A;  3X2H A;  3X2O A;  1BW4 A;  1BW3 A;  1OA7 A;  2PI8 A;  3SUL A;  5GLX A;  3X2K A;  4ENG A;  3X2J A;  1OA9 A;  3X2I A;  4L48 A;  3X2G A;  3X2L A;  3SUM A;  2HCZ X;  3ENG A;  4JP7 A;  3M3G A;  2G5D A;  1N10 A;  5GM9 A;  1HD5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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