The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
22
|
sequence length |
125
|
structure length |
125
|
Chain Sequence |
EQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Three-dimensional structure in solution of barwin, a protein from barley seed.
pubmed doi rcsb |
| molecule keywords |
BARWIN, BASIC BARLEY SEED PROTEIN
|
| molecule tags |
Lectin
|
| source organism |
Hordeum vulgare
|
| total genus |
22
|
| structure length |
125
|
| sequence length |
125
|
| ec nomenclature | |
| pdb deposition date | 1992-07-06 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00967 | Barwin | Barwin family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Barwin-like endoglucanases | RlpA-like domain |
#chains in the Genus database with same CATH superfamily 1WC2 A; 1BW4 A; 2HCZ X; 4FG2 A; 3X2L A; 2BH0 A; 3SUJ A; 3X2I A; 1BW3 A; 4FFT A; 4FER A; 5GLY A; 3ENG A; 1OA9 A; 2PI8 A; 2G6G A; 3X2J A; 3M3G A; 3X2H A; 2G5D A; 3X2N A; 4JS7 A; 5GM9 A; 3X2P A; 3SUL A; 2ENG A; 1OA7 A; 3SUM A; 5H4U A; 4JP6 A; 2GAE A; 1HD5 A; 4ENG A; 3X2K A; 5GLX A; 4AVR A; 4FG4 A; 2PJJ A; 2KQA A; 3X2G A; 4JP7 A; 3X2O A; 3D30 A; 1L8F A; 3X2M A; 3SUK A; 2PNW A; 4JCW A; 2AE0 X; 4L48 A; 4JJO A; 3CZB A; 4ZM7 A; 1N10 A; 2PIC A; #chains in the Genus database with same CATH topology 1QDN A; 3IR6 A; 4FG2 A; 1YNN D; 3X2L A; 1E61 A; 1IW7 D; 3IR7 A; 1PT0 A; 1VC3 B; 4FFT A; 5GLY A; 2JIR A; 2A68 D; 1E5V A; 4KDI A; 4C2M A; 3GTP A; 1EU1 A; 2JA6 A; 1R9T A; 4CRZ A; 2NYA A; 3GTM A; 2B63 A; 2PMZ A; 1OA7 A; 3GTJ A; 2VPY A; 1HD5 A; 1H0H A; 4CRY G; 1UHD A; 2WAQ A; 2YUJ A; 3CF2 A; 2KQA A; 2PJH B; 1G8K A; 4JP7 A; 3X2O A; 1DMS A; 1PYQ A; 2PNW A; 1SFO A; 3GTO A; 1TMO A; 2VPX A; 2JIP A; 1SMY D; 3CZB A; 1QCS A; 2O5J D; 3O5A A; 2A69 D; 4D7Z B; 4KLN A; 2E2H A; 2HCZ X; 1KQF A; 1G8J A; 3QQ8 A; 2BH0 A; 1PQE A; 5DYG A; 3X2I A; 1BW3 A; 2NAP A; 1TWC A; 1OA9 A; 4CS0 A; 3X2H A; 2VUM A; 1Y1W A; 2G5D A; 3DMR A; 5GM9 A; 3SUL A; 2R93 A; 3HU3 A; 3HU1 A; 4QIW A; 2R92 A; 3QQ7 A; 1R7R A; 5H4U A; 1E18 A; 2GAE A; 1WCM A; 4JP6 A; 1H5N A; 5T5M D; 3X2K A; 5FTN A; 1AA6 A; 2JIQ A; 3GTQ A; 1PPY A; 1PQH A; 1CZ5 A; 1E32 A; 1UHE A; 1Y5I A; 4JCW A; 3GTK A; 2AE0 X; 4L48 A; 4AON B; 2E7Z A; 4JJO A; 2JA5 A; 2NVX A; 2PIC A; 1WC2 A; 4AZD A; 2V45 A; 2IV2 X; 2A6H D; 5FTM A; 3HKZ A; 1AW8 B; 1CZ4 A; 1Q16 A; 1KQG A; 3ENG A; 3OUG A; 4KO8 A; 4KOD A; 3X2J A; 1PYU B; 3M3G A; 1YLE A; 2VPZ A; 5FTL A; 1TWG A; 3X2N A; 1TWH A; 2E2I A; 1FDO A; 1CR5 A; 1SIW A; 4JS7 A; 3X2P A; 5FTK A; 2EEO B; 2KI8 A; 3SUM A; 3TM7 B; 5C18 A; 2A6E D; 3GTL A; 2JA7 A; 2WB1 A; 1S3S A; 1FDI A; 4ENG A; 1Y4Z A; 5FTJ A; 1YNJ D; 1WLF A; 1R27 A; 2JIO A; 2PJJ A; 4FG4 A; 3X2G A; 5C1B A; 3D30 A; 3H0G A; 2DMR A; 4NOH A; 2C45 A; 3ML1 A; 2Y0S A; 4ZM7 A; 1N10 A; 3SUJ A; 1ZC1 A; 3CQZ A; 4AOK B; 1ZYR D; 1BW4 A; 1TWA A; 2JIM A; 1PT1 A; 4FER A; 2G6G A; 2PI8 A; 2CW0 D; 2NVY A; 5GLF A; 3FKI A; 2YU9 A; 3IR5 A; 1I3Q A; 2ENG A; 1K83 A; 4GA5 A; 3PLX B; 4KDL A; 3QWZ A; 4AYB A; 1E60 A; 1TWF A; 1DMR A; 5GLX A; 5T5I D; 4AVR A; 3GTG A; 2R7Z A; 4AAY A; 2VPW A; 1PQF A; 1L8F A; 1Y1V A; 4RV0 A; 3HU2 A; 3SUK A; 3X2M A; 3TIW A; 3QC8 A; 5EPP A; 1OGY A; 2V3V A; 4GA6 A; 5B6C A; 2BE5 D; 5DYI A; 1I50 A; 4DMR A; #chains in the Genus database with same CATH homology 1WC2 A; 1BW4 A; 2HCZ X; 4FG2 A; 3X2L A; 2BH0 A; 3SUJ A; 3X2I A; 1BW3 A; 4FFT A; 4FER A; 5GLY A; 3ENG A; 1OA9 A; 2PI8 A; 2G6G A; 3X2J A; 3M3G A; 3X2H A; 2G5D A; 3X2N A; 4JS7 A; 5GM9 A; 3X2P A; 3SUL A; 2ENG A; 1OA7 A; 3SUM A; 5H4U A; 4JP6 A; 2GAE A; 1HD5 A; 4ENG A; 3X2K A; 5GLX A; 4AVR A; 4FG4 A; 2PJJ A; 2KQA A; 3X2G A; 4JP7 A; 3X2O A; 3D30 A; 1L8F A; 3X2M A; 3SUK A; 2PNW A; 4JCW A; 2AE0 X; 4L48 A; 4JJO A; 3CZB A; 4ZM7 A; 1N10 A; 2PIC A;
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