1BW3A

Three-dimensional structure in solution of barwin, a protein from barley seed
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
125
structure length
125
Chain Sequence
b'EQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords BARWIN, BASIC BARLEY SEED PROTEIN
publication title Three-dimensional structure in solution of barwin, a protein from barley seed.
pubmed doi rcsb
source organism Hordeum vulgare
molecule tags Lectin
total genus 22
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 1992-07-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00967 Barwin Barwin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 1bw3A00
5H4UA 4ENGA 1OA9A 4L48A 5GM9A 2AE0X 4AVRA 2ENGA 1BW4A 4FFTA 3X2OA 1BW3A 2PICA 3X2PA 3X2NA 3SUKA 2PJJA 2GAEA 2BH0A 3ENGA 4JP7A 3X2KA 2G5DA 3X2IA 3X2MA 2G6GA 3CZBA 5GLXA 4JJOA 3X2JA 4JP6A 4FERA 2PNWA 2KQAA 2PI8A 3M3GA 4FG4A 4JS7A 1HD5A 3SUJA 3X2LA 4JCWA 4ZM7A 5GLYA 4FG2A 3SULA 2HCZX 1L8FA 3D30A 1WC2A 3X2GA 3X2HA 1N10A 3SUMA 1OA7A
chains in the Genus database with same CATH superfamily
1OA9A 1QDNA 2JA7A 3GTJA 5EPPA 3GTKA 1BW3A 4AYBA 2GAEA 1ZYRD 1PQEA 4CS0A 1PYUB 1DMRA 1YNJD 3X2KA 3O5AA 5FTLA 1H5NA 1E32A 3X2IA 1AW8B 2WB1A 3CF2A 3CZBA 4GA5A 5GLFA 4C2MA 5DYIA 5GLXA 2WAQA 2C45A 2E2IA 2KQAA 2R93A 4JS7A 1HD5A 4KO8A 2R7ZA 2BE5D 2CW0D 2Y0SA 5GLYA 2NVXA 2VPZA 5T5ID 1G8JA 2E7ZA 3HU1A 3SULA 3ML1A 2NYAA 3D30A 1Y4ZA 3IR5A 3X2HA 2JIQA 3HU3A 3SUMA 4CRYG 1FDOA 1K83A 3IR7A 2E2HA 2A6HD 4KDIA 1I3QA 4L48A 2YU9A 2AE0X 4AVRA 2VPXA 2ENGA 3OUGA 2A69D 1TMOA 1Y1VA 2VPYA 1WLFA 2A68D 3QWZA 4GA6A 2BH0A 1TWHA 1UHDA 3GTQA 1R7RA 1PT0A 3GTGA 2PMZA 4CRZA 2VUMA 3CQZA 3HKZA 1CZ4A 2JIPA 4QIWA 1DMSA 4ZM7A 1UHEA 2YUJA 1E61A 1E5VA 1G8KA 1R9TA 3PLXB 3TM7B 4FG2A 2PJHB 2JIOA 4KDLA 3H0GA 1TWAA 3IR6A 1OA7A 2V3VA 2NAPA 1WCMA 5GM9A 3GTPA 4KODA 1IW7D 5C1BA 1BW4A 2JIMA 1CZ5A 1Y1WA 1I50A 2V45A 3X2PA 1YNND 2JIRA 5FTKA 1PQHA 3HU2A 3TIWA 4AAYA 3GTMA 2R92A 2JA5A 1H0HA 4JP7A 2B63A 1E18A 4RV0A 2G5DA 1YLEA 3DMRA 1TWCA 5FTJA 5DYGA 2JA6A 4JJOA 1FDIA 3X2JA 2NVYA 4FERA 1SIWA 1TWFA 2PI8A 3SUJA 1SFOA 4JCWA 1KQGA 3FKIA 4AONB 1ZC1A 1OGYA 2HCZX 1WC2A 3X2GA 1KQFA 1N10A 1EU1A 5T5MD 2VPWA 4NOHA 5H4UA 4ENGA 1Q16A 3QQ7A 1TWGA 4AOKB 2EEOB 1PQFA 3QQ8A 3GTLA 4FFTA 3X2OA 2PICA 3X2NA 3SUKA 2PJJA 3QC8A 5C18A 4AZDA 3GTOA 1CR5A 3ENGA 5B6CA 1R27A 2IV2X 1PT1A 4KLNA 1PPYA 3X2MA 2G6GA 2A6ED 5FTMA 5FTNA 4JP6A 2PNWA 2O5JD 1S3SA 3M3GA 4FG4A 3X2LA 1AA6A 1PYQA 2DMRA 1SMYD 4DMRA 2KI8A 1VC3B 1L8FA 1QCSA 1Y5IA 1E60A 4D7ZB
chains in the Genus database with same CATH topology
5H4UA 4ENGA 1OA9A 4L48A 5GM9A 2AE0X 4AVRA 2ENGA 1BW4A 4FFTA 3X2OA 1BW3A 2PICA 3X2PA 3X2NA 3SUKA 2PJJA 2GAEA 2BH0A 3ENGA 4JP7A 3X2KA 2G5DA 3X2IA 3X2MA 2G6GA 3CZBA 5GLXA 4JJOA 3X2JA 4JP6A 4FERA 2PNWA 2KQAA 2PI8A 3M3GA 4FG4A 4JS7A 1HD5A 3SUJA 3X2LA 4JCWA 4ZM7A 5GLYA 4FG2A 3SULA 2HCZX 1L8FA 3D30A 1WC2A 3X2GA 3X2HA 1N10A 3SUMA 1OA7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5H4U A;  4ENG A;  1OA9 A;  4L48 A;  5GM9 A;  2AE0 X;  4AVR A;  2ENG A;  1BW4 A;  4FFT A;  3X2O A;  1BW3 A;  2PIC A;  3X2P A;  3X2N A;  3SUK A;  2PJJ A;  2GAE A;  2BH0 A;  3ENG A;  4JP7 A;  3X2K A;  2G5D A;  3X2I A;  3X2M A;  2G6G A;  3CZB A;  5GLX A;  4JJO A;  3X2J A;  4JP6 A;  4FER A;  2PNW A;  2KQA A;  2PI8 A;  3M3G A;  4FG4 A;  4JS7 A;  1HD5 A;  3SUJ A;  3X2L A;  4JCW A;  4ZM7 A;  5GLY A;  4FG2 A;  3SUL A;  2HCZ X;  1L8F A;  3D30 A;  1WC2 A;  3X2G A;  3X2H A;  1N10 A;  3SUM A;  1OA7 A; 
#chains in the Genus database with same CATH topology
 1OA9 A;  1QDN A;  2JA7 A;  3GTJ A;  5EPP A;  3GTK A;  1BW3 A;  4AYB A;  2GAE A;  1ZYR D;  1PQE A;  4CS0 A;  1PYU B;  1DMR A;  1YNJ D;  3X2K A;  3O5A A;  5FTL A;  1H5N A;  1E32 A;  3X2I A;  1AW8 B;  2WB1 A;  3CF2 A;  3CZB A;  4GA5 A;  5GLF A;  4C2M A;  5DYI A;  5GLX A;  2WAQ A;  2C45 A;  2E2I A;  2KQA A;  2R93 A;  4JS7 A;  1HD5 A;  4KO8 A;  2R7Z A;  2BE5 D;  2CW0 D;  2Y0S A;  5GLY A;  2NVX A;  2VPZ A;  5T5I D;  1G8J A;  2E7Z A;  3HU1 A;  3SUL A;  3ML1 A;  2NYA A;  3D30 A;  1Y4Z A;  3IR5 A;  3X2H A;  2JIQ A;  3HU3 A;  3SUM A;  4CRY G;  1FDO A;  1K83 A;  3IR7 A;  2E2H A;  2A6H D;  4KDI A;  1I3Q A;  4L48 A;  2YU9 A;  2AE0 X;  4AVR A;  2VPX A;  2ENG A;  3OUG A;  2A69 D;  1TMO A;  1Y1V A;  2VPY A;  1WLF A;  2A68 D;  3QWZ A;  4GA6 A;  2BH0 A;  1TWH A;  1UHD A;  3GTQ A;  1R7R A;  1PT0 A;  3GTG A;  2PMZ A;  4CRZ A;  2VUM A;  3CQZ A;  3HKZ A;  1CZ4 A;  2JIP A;  4QIW A;  1DMS A;  4ZM7 A;  1UHE A;  2YUJ A;  1E61 A;  1E5V A;  1G8K A;  1R9T A;  3PLX B;  3TM7 B;  4FG2 A;  2PJH B;  2JIO A;  4KDL A;  3H0G A;  1TWA A;  3IR6 A;  1OA7 A;  2V3V A;  2NAP A;  1WCM A;  5GM9 A;  3GTP A;  4KOD A;  1IW7 D;  5C1B A;  1BW4 A;  2JIM A;  1CZ5 A;  1Y1W A;  1I50 A;  2V45 A;  3X2P A;  1YNN D;  2JIR A;  5FTK A;  1PQH A;  3HU2 A;  3TIW A;  4AAY A;  3GTM A;  2R92 A;  2JA5 A;  1H0H A;  4JP7 A;  2B63 A;  1E18 A;  4RV0 A;  2G5D A;  1YLE A;  3DMR A;  1TWC A;  5FTJ A;  5DYG A;  2JA6 A;  4JJO A;  1FDI A;  3X2J A;  2NVY A;  4FER A;  1SIW A;  1TWF A;  2PI8 A;  3SUJ A;  1SFO A;  4JCW A;  1KQG A;  3FKI A;  4AON B;  1ZC1 A;  1OGY A;  2HCZ X;  1WC2 A;  3X2G A;  1KQF A;  1N10 A;  1EU1 A;  5T5M D;  2VPW A;  4NOH A;  5H4U A;  4ENG A;  1Q16 A;  3QQ7 A;  1TWG A;  4AOK B;  2EEO B;  1PQF A;  3QQ8 A;  3GTL A;  4FFT A;  3X2O A;  2PIC A;  3X2N A;  3SUK A;  2PJJ A;  3QC8 A;  5C18 A;  4AZD A;  3GTO A;  1CR5 A;  3ENG A;  5B6C A;  1R27 A;  2IV2 X;  1PT1 A;  4KLN A;  1PPY A;  3X2M A;  2G6G A;  2A6E D;  5FTM A;  5FTN A;  4JP6 A;  2PNW A;  2O5J D;  1S3S A;  3M3G A;  4FG4 A;  3X2L A;  1AA6 A;  1PYQ A;  2DMR A;  1SMY D;  4DMR A;  2KI8 A;  1VC3 B;  1L8F A;  1QCS A;  1Y5I A;  1E60 A;  4D7Z B; 
#chains in the Genus database with same CATH homology
 5H4U A;  4ENG A;  1OA9 A;  4L48 A;  5GM9 A;  2AE0 X;  4AVR A;  2ENG A;  1BW4 A;  4FFT A;  3X2O A;  1BW3 A;  2PIC A;  3X2P A;  3X2N A;  3SUK A;  2PJJ A;  2GAE A;  2BH0 A;  3ENG A;  4JP7 A;  3X2K A;  2G5D A;  3X2I A;  3X2M A;  2G6G A;  3CZB A;  5GLX A;  4JJO A;  3X2J A;  4JP6 A;  4FER A;  2PNW A;  2KQA A;  2PI8 A;  3M3G A;  4FG4 A;  4JS7 A;  1HD5 A;  3SUJ A;  3X2L A;  4JCW A;  4ZM7 A;  5GLY A;  4FG2 A;  3SUL A;  2HCZ X;  1L8F A;  3D30 A;  1WC2 A;  3X2G A;  3X2H A;  1N10 A;  3SUM A;  1OA7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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