1BW3A

Three-dimensional structure in solution of barwin, a protein from barley seed
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
125
structure length
125
Chain Sequence
EQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords BARWIN, BASIC BARLEY SEED PROTEIN
publication title Three-dimensional structure in solution of barwin, a protein from barley seed.
pubmed doi rcsb
source organism Hordeum vulgare
molecule tags Lectin
total genus 22
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 1992-07-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00967 Barwin Barwin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 1bw3A00
2AE0X 4JCWA 1OA7A 5GM9A 5GLYA 4JP7A 4AVRA 3X2KA 1L8FA 4FFTA 3X2IA 3X2LA 1BW4A 2PNWA 1HD5A 3X2PA 4JS7A 3X2JA 3ENGA 5H4UA 1BW3A 4JP6A 2G6GA 5GLXA 3X2HA 2PI8A 2HCZX 1OA9A 2KQAA 3SUJA 4ENGA 3X2NA 2BH0A 2G5DA 2PICA 4L48A 3SULA 3X2OA 3D30A 1N10A 3SUKA 3M3GA 2GAEA 4JJOA 3X2MA 3SUMA 4FG4A 3X2GA 4ZM7A 2ENGA 4FG2A 3CZBA 1WC2A 4FERA 2PJJA
chains in the Genus database with same CATH superfamily
1E18A 5GLYA 5GLFA 4AVRA 3HKZA 3X2KA 1L8FA 1UHEA 3X2IA 1BW4A 1QDNA 1Y5IA 3X2PA 3IR7A 1Q16A 5DYGA 4AYBA 2JIOA 1BW3A 1CZ5A 1TWCA 3X2NA 2NYAA 2PICA 3D30A 1WCMA 2A69D 3M3GA 1QCSA 1Y1VA 2GAEA 4JJOA 4GA5A 5DYIA 2JA5A 3IR5A 1TMOA 4ZM7A 2YU9A 2JA7A 1OGYA 3CZBA 2EEOB 1S3SA 2R7ZA 2VPYA 3FKIA 1R9TA 4JCWA 1OA7A 5T5ID 1KQFA 3H0GA 3TIWA 4D7ZB 2O5JD 2VUMA 3GTMA 3IR6A 4AZDA 1IW7D 2PNWA 1G8JA 2PJHB 1Y4ZA 1DMSA 1TWHA 3ENGA 2E2IA 1H0HA 5H4UA 3HU2A 2G6GA 5GLXA 3X2HA 1YNJD 2E7ZA 3GTOA 2PI8A 2V3VA 5FTKA 3QQ8A 3HU1A 3SUJA 2JIQA 3GTPA 2NVYA 1YLEA 4L48A 3X2OA 2JIMA 2WB1A 2CW0D 3QC8A 1PQFA 4FG4A 2JA6A 4AONB 1E60A 2ENGA 4NOHA 3SUKA 2A6HD 4KDIA 1PYUB 5FTNA 4AOKB 5FTLA 2E2HA 2AE0X 5GM9A 2R92A 3OUGA 2DMRA 4JP7A 3GTQA 1E5VA 4FFTA 3TM7B 1SIWA 5FTJA 4DMRA 1E61A 4KLNA 2A68D 5EPPA 5C18A 1I50A 3PLXB 4AAYA 2C45A 2HCZX 1OA9A 1PQHA 1TWFA 2KQAA 2NAPA 1WLFA 2V45A 2VPXA 4KODA 2BH0A 4CS0A 1I3QA 3DMRA 3GTLA 1EU1A 2YUJA 1PT0A 1G8KA 1DMRA 4CRZA 3CQZA 5FTMA 2BE5D 3X2MA 3GTKA 1PYQA 1ZC1A 4RV0A 2NVXA 3X2GA 2VPZA 4FG2A 2PMZA 1WC2A 4FERA 1SMYD 2IV2X 2B63A 1ZYRD 2JIPA 1PT1A 4KO8A 1R27A 1Y1WA 3X2LA 1PPYA 4GA6A 1HD5A 1CR5A 2WAQA 3QWZA 4CRYG 1KQGA 4JS7A 3X2JA 2KI8A 4QIWA 1UHDA 5B6CA 1TWAA 1SFOA 2A6ED 1PQEA 4JP6A 3GTJA 3QQ7A 4C2MA 1YNND 1K83A 1TWGA 3O5AA 4ENGA 3HU3A 2R93A 5T5MD 3ML1A 1H5NA 2G5DA 3SULA 2VPWA 1N10A 1FDOA 2JIRA 4KDLA 1R7RA 3CF2A 3SUMA 2Y0SA 3GTGA 1AA6A 1AW8B 5C1BA 1VC3B 1CZ4A 1FDIA 1E32A 2PJJA
chains in the Genus database with same CATH topology
2AE0X 4JCWA 1OA7A 5GM9A 5GLYA 4JP7A 4AVRA 3X2KA 1L8FA 4FFTA 3X2IA 3X2LA 1BW4A 2PNWA 1HD5A 3X2PA 4JS7A 3X2JA 3ENGA 5H4UA 1BW3A 4JP6A 2G6GA 5GLXA 3X2HA 2PI8A 2HCZX 1OA9A 2KQAA 3SUJA 4ENGA 3X2NA 2BH0A 2G5DA 2PICA 4L48A 3SULA 3X2OA 3D30A 1N10A 3SUKA 3M3GA 2GAEA 4JJOA 3X2MA 3SUMA 4FG4A 3X2GA 4ZM7A 2ENGA 4FG2A 3CZBA 1WC2A 4FERA 2PJJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AE0 X;  4JCW A;  1OA7 A;  5GM9 A;  5GLY A;  4JP7 A;  4AVR A;  3X2K A;  1L8F A;  4FFT A;  3X2I A;  3X2L A;  1BW4 A;  2PNW A;  1HD5 A;  3X2P A;  4JS7 A;  3X2J A;  3ENG A;  5H4U A;  1BW3 A;  4JP6 A;  2G6G A;  5GLX A;  3X2H A;  2PI8 A;  2HCZ X;  1OA9 A;  2KQA A;  3SUJ A;  4ENG A;  3X2N A;  2BH0 A;  2G5D A;  2PIC A;  4L48 A;  3SUL A;  3X2O A;  3D30 A;  1N10 A;  3SUK A;  3M3G A;  2GAE A;  4JJO A;  3X2M A;  3SUM A;  4FG4 A;  3X2G A;  4ZM7 A;  2ENG A;  4FG2 A;  3CZB A;  1WC2 A;  4FER A;  2PJJ A; 
#chains in the Genus database with same CATH topology
 1E18 A;  5GLY A;  5GLF A;  4AVR A;  3HKZ A;  3X2K A;  1L8F A;  1UHE A;  3X2I A;  1BW4 A;  1QDN A;  1Y5I A;  3X2P A;  3IR7 A;  1Q16 A;  5DYG A;  4AYB A;  2JIO A;  1BW3 A;  1CZ5 A;  1TWC A;  3X2N A;  2NYA A;  2PIC A;  3D30 A;  1WCM A;  2A69 D;  3M3G A;  1QCS A;  1Y1V A;  2GAE A;  4JJO A;  4GA5 A;  5DYI A;  2JA5 A;  3IR5 A;  1TMO A;  4ZM7 A;  2YU9 A;  2JA7 A;  1OGY A;  3CZB A;  2EEO B;  1S3S A;  2R7Z A;  2VPY A;  3FKI A;  1R9T A;  4JCW A;  1OA7 A;  5T5I D;  1KQF A;  3H0G A;  3TIW A;  4D7Z B;  2O5J D;  2VUM A;  3GTM A;  3IR6 A;  4AZD A;  1IW7 D;  2PNW A;  1G8J A;  2PJH B;  1Y4Z A;  1DMS A;  1TWH A;  3ENG A;  2E2I A;  1H0H A;  5H4U A;  3HU2 A;  2G6G A;  5GLX A;  3X2H A;  1YNJ D;  2E7Z A;  3GTO A;  2PI8 A;  2V3V A;  5FTK A;  3QQ8 A;  3HU1 A;  3SUJ A;  2JIQ A;  3GTP A;  2NVY A;  1YLE A;  4L48 A;  3X2O A;  2JIM A;  2WB1 A;  2CW0 D;  3QC8 A;  1PQF A;  4FG4 A;  2JA6 A;  4AON B;  1E60 A;  2ENG A;  4NOH A;  3SUK A;  2A6H D;  4KDI A;  1PYU B;  5FTN A;  4AOK B;  5FTL A;  2E2H A;  2AE0 X;  5GM9 A;  2R92 A;  3OUG A;  2DMR A;  4JP7 A;  3GTQ A;  1E5V A;  4FFT A;  3TM7 B;  1SIW A;  5FTJ A;  4DMR A;  1E61 A;  4KLN A;  2A68 D;  5EPP A;  5C18 A;  1I50 A;  3PLX B;  4AAY A;  2C45 A;  2HCZ X;  1OA9 A;  1PQH A;  1TWF A;  2KQA A;  2NAP A;  1WLF A;  2V45 A;  2VPX A;  4KOD A;  2BH0 A;  4CS0 A;  1I3Q A;  3DMR A;  3GTL A;  1EU1 A;  2YUJ A;  1PT0 A;  1G8K A;  1DMR A;  4CRZ A;  3CQZ A;  5FTM A;  2BE5 D;  3X2M A;  3GTK A;  1PYQ A;  1ZC1 A;  4RV0 A;  2NVX A;  3X2G A;  2VPZ A;  4FG2 A;  2PMZ A;  1WC2 A;  4FER A;  1SMY D;  2IV2 X;  2B63 A;  1ZYR D;  2JIP A;  1PT1 A;  4KO8 A;  1R27 A;  1Y1W A;  3X2L A;  1PPY A;  4GA6 A;  1HD5 A;  1CR5 A;  2WAQ A;  3QWZ A;  4CRY G;  1KQG A;  4JS7 A;  3X2J A;  2KI8 A;  4QIW A;  1UHD A;  5B6C A;  1TWA A;  1SFO A;  2A6E D;  1PQE A;  4JP6 A;  3GTJ A;  3QQ7 A;  4C2M A;  1YNN D;  1K83 A;  1TWG A;  3O5A A;  4ENG A;  3HU3 A;  2R93 A;  5T5M D;  3ML1 A;  1H5N A;  2G5D A;  3SUL A;  2VPW A;  1N10 A;  1FDO A;  2JIR A;  4KDL A;  1R7R A;  3CF2 A;  3SUM A;  2Y0S A;  3GTG A;  1AA6 A;  1AW8 B;  5C1B A;  1VC3 B;  1CZ4 A;  1FDI A;  1E32 A;  2PJJ A; 
#chains in the Genus database with same CATH homology
 2AE0 X;  4JCW A;  1OA7 A;  5GM9 A;  5GLY A;  4JP7 A;  4AVR A;  3X2K A;  1L8F A;  4FFT A;  3X2I A;  3X2L A;  1BW4 A;  2PNW A;  1HD5 A;  3X2P A;  4JS7 A;  3X2J A;  3ENG A;  5H4U A;  1BW3 A;  4JP6 A;  2G6G A;  5GLX A;  3X2H A;  2PI8 A;  2HCZ X;  1OA9 A;  2KQA A;  3SUJ A;  4ENG A;  3X2N A;  2BH0 A;  2G5D A;  2PIC A;  4L48 A;  3SUL A;  3X2O A;  3D30 A;  1N10 A;  3SUK A;  3M3G A;  2GAE A;  4JJO A;  3X2M A;  3SUM A;  4FG4 A;  3X2G A;  4ZM7 A;  2ENG A;  4FG2 A;  3CZB A;  1WC2 A;  4FER A;  2PJJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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