1PQEA

S25a mutant of pyruvoyl dependent aspartate decarboxylase
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
117
structure length
117
Chain Sequence
MIRTMLQGKLHRVKVTHADLHYEGACAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
source organism Escherichia coli
molecule tags Lyase
molecule keywords Aspartate 1-decarboxylase
total genus 35
structure length 117
sequence length 117
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-06-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1pqeA00
1VC3B 2E7ZA 1IW7D 4AZDA 3QQ7A 2VPZA 5EPPA 2V3VA 3QWZA 3HU1A 1OGYA 4KODA 1Y1VA 1Q16A 3HKZA 2IV2X 2VUMA 1E61A 4D7ZB 1Y1WA 1TWGA 3DMRA 5DYGA 1Y5IA 3HU2A 5FTJA 3GTMA 2JIQA 1PQHA 2JIPA 2YU9A 1UHDA 1E60A 1PYUB 1TWFA 2JIMA 4KDLA 1FDIA 1WCMA 1Y4ZA 2EEOB 2VPXA 1CZ4A 2NYAA 4CS0A 1H0HA 1I3QA 5FTLA 4GA5A 4KLNA 1CZ5A 5GLFA 3GTJA 3CQZA 1FDOA 4CRYG 2DMRA 1SFOA 5DYIA 3GTLA 1UHEA 4C2MA 5C18A 4GA6A 2E2IA 2PJHB 3GTGA 1H5NA 1PQFA 1EU1A 3OUGA 2R93A 1AW8B 1SIWA 2E2HA 1R27A 2WAQA 1PT0A 4AOKB 3QQ8A 2KI8A 1YLEA 5C1BA 3CF2A 4AYBA 1R7RA 2Y0SA 1CR5A 4AAYA 3ML1A 3GTPA 3H0GA 3IR5A 2JA7A 4QIWA 1TMOA 2V45A 1DMSA 1PQEA 2B63A 1E18A 3FKIA 1TWHA 1QCSA 1E32A 4KDIA 1PPYA 1TWAA 4AONB 2JIRA 3HU3A 3IR7A 2NVXA 1K83A 3GTOA 3TM7B 4CRZA 2WB1A 3QC8A 5FTMA 5B6CA 5T5ID 4KO8A 5T5MD 2VPWA 4DMRA 2VPYA 1R9TA 3GTKA 2R7ZA 4RV0A 3PLXB 1I50A 2NAPA 1KQGA 3IR6A 5FTNA 5FTKA 1G8JA 1KQFA 2PMZA 2JIOA 1TWCA 1WLFA 1E5VA 2C45A 3O5AA 1DMRA 2NVYA 1PYQA 3TIWA 1AA6A 1G8KA 1QDNA 1S3SA 3GTQA 2R92A 1PT1A 2JA5A 2JA6A
chains in the Genus database with same CATH superfamily
1VC3B 2E7ZA 1IW7D 4AZDA 3SUJA 3QQ7A 2VPZA 5EPPA 3X2IA 2V3VA 3QWZA 1OA7A 3SUKA 3ENGA 3HU1A 1BW3A 1OGYA 4KODA 1Y1VA 1Q16A 3HKZA 2PJJA 2IV2X 2VUMA 3M3GA 1E61A 2PI8A 3SULA 4D7ZB 1Y1WA 1TWGA 1L8FA 3DMRA 2ENGA 5DYGA 1Y5IA 3HU2A 5FTJA 4FFTA 2JIQA 1PQHA 3GTMA 2JIPA 2PICA 1UHDA 2YU9A 1E60A 1PYUB 2G5DA 1TWFA 2JIMA 4KDLA 1FDIA 3X2MA 1WCMA 1Y4ZA 2EEOB 2VPXA 1CZ4A 2NYAA 3SUMA 1H0HA 3X2PA 4CS0A 4ZM7A 5FTLA 4GA5A 1I3QA 4KLNA 4FERA 1ZC1A 1CZ5A 5GLFA 3GTJA 4FG4A 3CQZA 1FDOA 4CRYG 2DMRA 1SFOA 5DYIA 3GTLA 3X2GA 5H4UA 1UHEA 2G6GA 4C2MA 2HCZX 5C18A 2O5JD 4ENGA 4GA6A 2E2IA 2PJHB 3GTGA 1H5NA 1PQFA 1EU1A 3OUGA 2R93A 1N10A 4JCWA 1AW8B 1SIWA 1OA9A 3D30A 2E2HA 1R27A 2BE5D 2AE0X 1PT0A 2WAQA 2YUJA 3QQ8A 2KI8A 1YNND 4AOKB 2A6ED 1YLEA 5C1BA 3CF2A 3X2KA 4JJOA 4AYBA 1R7RA 2Y0SA 1CR5A 4AAYA 4NOHA 3X2NA 3ML1A 5GM9A 2KQAA 2PNWA 3GTPA 3H0GA 1BW4A 3IR5A 3X2OA 2JA7A 4QIWA 1TMOA 2V45A 1DMSA 1PQEA 2B63A 1E18A 1YNJD 4FG2A 1TWHA 1QCSA 3FKIA 1E32A 4JS7A 4KDIA 1PPYA 4JP6A 1TWAA 4AONB 2JIRA 3HU3A 3IR7A 2CW0D 5GLXA 3X2LA 2NVXA 1ZYRD 3X2HA 1K83A 3GTOA 2A69D 3TM7B 4CRZA 2WB1A 3QC8A 5FTMA 3CZBA 5B6CA 5T5ID 4KO8A 2A68D 5T5MD 2VPWA 4DMRA 2VPYA 1R9TA 5GLYA 3GTKA 1HD5A 2R7ZA 4RV0A 3PLXB 3X2JA 1I50A 2NAPA 1KQGA 2BH0A 3IR6A 5FTNA 5FTKA 1G8JA 1SMYD 4AVRA 1KQFA 2GAEA 2PMZA 2JIOA 1TWCA 2A6HD 1WLFA 1E5VA 2C45A 3O5AA 1DMRA 2NVYA 4L48A 4JP7A 1PYQA 1WC2A 3TIWA 1G8KA 1QDNA 1S3SA 1AA6A 3GTQA 2R92A 1PT1A 2JA5A 2JA6A
chains in the Genus database with same CATH topology
1VC3B 2E7ZA 1IW7D 4AZDA 3QQ7A 2VPZA 5EPPA 2V3VA 3QWZA 3HU1A 1OGYA 4KODA 1Y1VA 1Q16A 3HKZA 2PJJA 2IV2X 2VUMA 1E61A 2PI8A 4D7ZB 1Y1WA 1TWGA 3DMRA 5DYGA 1Y5IA 3HU2A 5FTJA 3GTMA 2JIQA 1PQHA 2JIPA 2PICA 1UHDA 2YU9A 1E60A 1PYUB 2G5DA 1TWFA 2JIMA 4KDLA 1FDIA 1WCMA 1Y4ZA 2EEOB 2VPXA 1CZ4A 2NYAA 4CS0A 1H0HA 1I3QA 5FTLA 4GA5A 4KLNA 1ZC1A 1CZ5A 5GLFA 3GTJA 3CQZA 1FDOA 4CRYG 2DMRA 1SFOA 5DYIA 3GTLA 1UHEA 2G6GA 4C2MA 5C18A 2O5JD 4GA6A 2E2IA 2PJHB 3GTGA 1H5NA 1PQFA 1EU1A 3OUGA 2R93A 1AW8B 1SIWA 2E2HA 1R27A 2BE5D 2AE0X 1PT0A 2WAQA 2YUJA 3QQ8A 2KI8A 1YNND 4AOKB 2A6ED 1YLEA 5C1BA 3CF2A 4AYBA 1R7RA 2Y0SA 1CR5A 4AAYA 4NOHA 3ML1A 3GTPA 2PNWA 3H0GA 3IR5A 2JA7A 4QIWA 2V45A 1TMOA 1DMSA 1PQEA 2B63A 1E18A 1YNJD 1TWHA 1QCSA 3FKIA 1E32A 4KDIA 1PPYA 1TWAA 4AONB 2JIRA 3HU3A 3IR7A 2CW0D 2NVXA 1ZYRD 1K83A 3GTOA 2A69D 3TM7B 4CRZA 2WB1A 3QC8A 5FTMA 3CZBA 5B6CA 5T5ID 4KO8A 2A68D 5T5MD 2VPWA 4DMRA 2VPYA 1R9TA 3GTKA 2R7ZA 4RV0A 3PLXB 1I50A 2NAPA 1KQGA 3IR6A 5FTNA 5FTKA 1G8JA 1SMYD 1KQFA 2GAEA 2PMZA 2JIOA 1TWCA 2A6HD 1WLFA 1E5VA 2C45A 3O5AA 1DMRA 2NVYA 1PYQA 3TIWA 1AA6A 1G8KA 1QDNA 1S3SA 3GTQA 2R92A 1PT1A 2JA5A 2JA6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VC3 B;  2E7Z A;  1IW7 D;  4AZD A;  3QQ7 A;  2VPZ A;  5EPP A;  2V3V A;  3QWZ A;  3HU1 A;  1OGY A;  4KOD A;  1Y1V A;  1Q16 A;  3HKZ A;  2IV2 X;  2VUM A;  1E61 A;  4D7Z B;  1Y1W A;  1TWG A;  3DMR A;  5DYG A;  1Y5I A;  3HU2 A;  5FTJ A;  3GTM A;  2JIQ A;  1PQH A;  2JIP A;  2YU9 A;  1UHD A;  1E60 A;  1PYU B;  1TWF A;  2JIM A;  4KDL A;  1FDI A;  1WCM A;  1Y4Z A;  2EEO B;  2VPX A;  1CZ4 A;  2NYA A;  4CS0 A;  1H0H A;  1I3Q A;  5FTL A;  4GA5 A;  4KLN A;  1CZ5 A;  5GLF A;  3GTJ A;  3CQZ A;  1FDO A;  4CRY G;  2DMR A;  1SFO A;  5DYI A;  3GTL A;  1UHE A;  4C2M A;  5C18 A;  4GA6 A;  2E2I A;  2PJH B;  3GTG A;  1H5N A;  1PQF A;  1EU1 A;  3OUG A;  2R93 A;  1AW8 B;  1SIW A;  2E2H A;  1R27 A;  2WAQ A;  1PT0 A;  4AOK B;  3QQ8 A;  2KI8 A;  1YLE A;  5C1B A;  3CF2 A;  4AYB A;  1R7R A;  2Y0S A;  1CR5 A;  4AAY A;  3ML1 A;  3GTP A;  3H0G A;  3IR5 A;  2JA7 A;  4QIW A;  1TMO A;  2V45 A;  1DMS A;  1PQE A;  2B63 A;  1E18 A;  3FKI A;  1TWH A;  1QCS A;  1E32 A;  4KDI A;  1PPY A;  1TWA A;  4AON B;  2JIR A;  3HU3 A;  3IR7 A;  2NVX A;  1K83 A;  3GTO A;  3TM7 B;  4CRZ A;  2WB1 A;  3QC8 A;  5FTM A;  5B6C A;  5T5I D;  4KO8 A;  5T5M D;  2VPW A;  4DMR A;  2VPY A;  1R9T A;  3GTK A;  2R7Z A;  4RV0 A;  3PLX B;  1I50 A;  2NAP A;  1KQG A;  3IR6 A;  5FTN A;  5FTK A;  1G8J A;  1KQF A;  2PMZ A;  2JIO A;  1TWC A;  1WLF A;  1E5V A;  2C45 A;  3O5A A;  1DMR A;  2NVY A;  1PYQ A;  3TIW A;  1AA6 A;  1G8K A;  1QDN A;  1S3S A;  3GTQ A;  2R92 A;  1PT1 A;  2JA5 A;  2JA6 A; 
#chains in the Genus database with same CATH topology
 1VC3 B;  2E7Z A;  1IW7 D;  4AZD A;  3SUJ A;  3QQ7 A;  2VPZ A;  5EPP A;  3X2I A;  2V3V A;  3QWZ A;  1OA7 A;  3SUK A;  3ENG A;  3HU1 A;  1BW3 A;  1OGY A;  4KOD A;  1Y1V A;  1Q16 A;  3HKZ A;  2PJJ A;  2IV2 X;  2VUM A;  3M3G A;  1E61 A;  2PI8 A;  3SUL A;  4D7Z B;  1Y1W A;  1TWG A;  1L8F A;  3DMR A;  2ENG A;  5DYG A;  1Y5I A;  3HU2 A;  5FTJ A;  4FFT A;  2JIQ A;  1PQH A;  3GTM A;  2JIP A;  2PIC A;  1UHD A;  2YU9 A;  1E60 A;  1PYU B;  2G5D A;  1TWF A;  2JIM A;  4KDL A;  1FDI A;  3X2M A;  1WCM A;  1Y4Z A;  2EEO B;  2VPX A;  1CZ4 A;  2NYA A;  3SUM A;  1H0H A;  3X2P A;  4CS0 A;  4ZM7 A;  5FTL A;  4GA5 A;  1I3Q A;  4KLN A;  4FER A;  1ZC1 A;  1CZ5 A;  5GLF A;  3GTJ A;  4FG4 A;  3CQZ A;  1FDO A;  4CRY G;  2DMR A;  1SFO A;  5DYI A;  3GTL A;  3X2G A;  5H4U A;  1UHE A;  2G6G A;  4C2M A;  2HCZ X;  5C18 A;  2O5J D;  4ENG A;  4GA6 A;  2E2I A;  2PJH B;  3GTG A;  1H5N A;  1PQF A;  1EU1 A;  3OUG A;  2R93 A;  1N10 A;  4JCW A;  1AW8 B;  1SIW A;  1OA9 A;  3D30 A;  2E2H A;  1R27 A;  2BE5 D;  2AE0 X;  1PT0 A;  2WAQ A;  2YUJ A;  3QQ8 A;  2KI8 A;  1YNN D;  4AOK B;  2A6E D;  1YLE A;  5C1B A;  3CF2 A;  3X2K A;  4JJO A;  4AYB A;  1R7R A;  2Y0S A;  1CR5 A;  4AAY A;  4NOH A;  3X2N A;  3ML1 A;  5GM9 A;  2KQA A;  2PNW A;  3GTP A;  3H0G A;  1BW4 A;  3IR5 A;  3X2O A;  2JA7 A;  4QIW A;  1TMO A;  2V45 A;  1DMS A;  1PQE A;  2B63 A;  1E18 A;  1YNJ D;  4FG2 A;  1TWH A;  1QCS A;  3FKI A;  1E32 A;  4JS7 A;  4KDI A;  1PPY A;  4JP6 A;  1TWA A;  4AON B;  2JIR A;  3HU3 A;  3IR7 A;  2CW0 D;  5GLX A;  3X2L A;  2NVX A;  1ZYR D;  3X2H A;  1K83 A;  3GTO A;  2A69 D;  3TM7 B;  4CRZ A;  2WB1 A;  3QC8 A;  5FTM A;  3CZB A;  5B6C A;  5T5I D;  4KO8 A;  2A68 D;  5T5M D;  2VPW A;  4DMR A;  2VPY A;  1R9T A;  5GLY A;  3GTK A;  1HD5 A;  2R7Z A;  4RV0 A;  3PLX B;  3X2J A;  1I50 A;  2NAP A;  1KQG A;  2BH0 A;  3IR6 A;  5FTN A;  5FTK A;  1G8J A;  1SMY D;  4AVR A;  1KQF A;  2GAE A;  2PMZ A;  2JIO A;  1TWC A;  2A6H D;  1WLF A;  1E5V A;  2C45 A;  3O5A A;  1DMR A;  2NVY A;  4L48 A;  4JP7 A;  1PYQ A;  1WC2 A;  3TIW A;  1G8K A;  1QDN A;  1S3S A;  1AA6 A;  3GTQ A;  2R92 A;  1PT1 A;  2JA5 A;  2JA6 A; 
#chains in the Genus database with same CATH homology
 1VC3 B;  2E7Z A;  1IW7 D;  4AZD A;  3QQ7 A;  2VPZ A;  5EPP A;  2V3V A;  3QWZ A;  3HU1 A;  1OGY A;  4KOD A;  1Y1V A;  1Q16 A;  3HKZ A;  2PJJ A;  2IV2 X;  2VUM A;  1E61 A;  2PI8 A;  4D7Z B;  1Y1W A;  1TWG A;  3DMR A;  5DYG A;  1Y5I A;  3HU2 A;  5FTJ A;  3GTM A;  2JIQ A;  1PQH A;  2JIP A;  2PIC A;  1UHD A;  2YU9 A;  1E60 A;  1PYU B;  2G5D A;  1TWF A;  2JIM A;  4KDL A;  1FDI A;  1WCM A;  1Y4Z A;  2EEO B;  2VPX A;  1CZ4 A;  2NYA A;  4CS0 A;  1H0H A;  1I3Q A;  5FTL A;  4GA5 A;  4KLN A;  1ZC1 A;  1CZ5 A;  5GLF A;  3GTJ A;  3CQZ A;  1FDO A;  4CRY G;  2DMR A;  1SFO A;  5DYI A;  3GTL A;  1UHE A;  2G6G A;  4C2M A;  5C18 A;  2O5J D;  4GA6 A;  2E2I A;  2PJH B;  3GTG A;  1H5N A;  1PQF A;  1EU1 A;  3OUG A;  2R93 A;  1AW8 B;  1SIW A;  2E2H A;  1R27 A;  2BE5 D;  2AE0 X;  1PT0 A;  2WAQ A;  2YUJ A;  3QQ8 A;  2KI8 A;  1YNN D;  4AOK B;  2A6E D;  1YLE A;  5C1B A;  3CF2 A;  4AYB A;  1R7R A;  2Y0S A;  1CR5 A;  4AAY A;  4NOH A;  3ML1 A;  3GTP A;  2PNW A;  3H0G A;  3IR5 A;  2JA7 A;  4QIW A;  2V45 A;  1TMO A;  1DMS A;  1PQE A;  2B63 A;  1E18 A;  1YNJ D;  1TWH A;  1QCS A;  3FKI A;  1E32 A;  4KDI A;  1PPY A;  1TWA A;  4AON B;  2JIR A;  3HU3 A;  3IR7 A;  2CW0 D;  2NVX A;  1ZYR D;  1K83 A;  3GTO A;  2A69 D;  3TM7 B;  4CRZ A;  2WB1 A;  3QC8 A;  5FTM A;  3CZB A;  5B6C A;  5T5I D;  4KO8 A;  2A68 D;  5T5M D;  2VPW A;  4DMR A;  2VPY A;  1R9T A;  3GTK A;  2R7Z A;  4RV0 A;  3PLX B;  1I50 A;  2NAP A;  1KQG A;  3IR6 A;  5FTN A;  5FTK A;  1G8J A;  1SMY D;  1KQF A;  2GAE A;  2PMZ A;  2JIO A;  1TWC A;  2A6H D;  1WLF A;  1E5V A;  2C45 A;  3O5A A;  1DMR A;  2NVY A;  1PYQ A;  3TIW A;  1AA6 A;  1G8K A;  1QDN A;  1S3S A;  3GTQ A;  2R92 A;  1PT1 A;  2JA5 A;  2JA6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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