1PQEA

S25a mutant of pyruvoyl dependent aspartate decarboxylase
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
117
structure length
117
Chain Sequence
b'MIRTMLQGKLHRVKVTHADLHYEGACAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRT'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Aspartate 1-decarboxylase
molecule tags Lyase
source organism Escherichia coli
publication title Structural constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
total genus 35
structure length 117
sequence length 117
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-06-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1pqeA00
3GTPA 2JA6A 1PT1A 1WLFA 2JIPA 4GA5A 5FTKA 1E5VA 2IV2X 1K83A 2PMZA 5FTLA 1CZ5A 1UHEA 3QC8A 1KQGA 1I3QA 1PYUB 3IR7A 2NAPA 1DMRA 3DMRA 3O5AA 2R92A 4AONB 3ML1A 1OGYA 5FTJA 3GTQA 4AAYA 1UHDA 5C18A 1PYQA 1S3SA 2WAQA 2NVXA 4AYBA 1Y5IA 2JIOA 1Y1WA 1YLEA 3HU1A 3IR6A 1H0HA 1R7RA 1AA6A 2JIRA 1EU1A 4KODA 5FTNA 1IW7D 1Y1VA 1E18A 2JA5A 2KI8A 3IR5A 2JA7A 1TMOA 1TWHA 3CQZA 2PJHB 1FDIA 1SFOA 2VPYA 3GTMA 2NVYA 2E7ZA 1WCMA 1PQFA 2VPWA 3GTLA 3GTGA 4CRZA 4QIWA 5DYGA 1TWCA 4CRYG 3H0GA 2VPXA 4KDLA 5C1BA 1TWGA 2VUMA 1G8JA 2R7ZA 4GA6A 1PQEA 3TM7B 4KO8A 1QDNA 2R93A 2Y0SA 2JIMA 2E2IA 4CS0A 5T5MD 5B6CA 1I50A 3QWZA 3GTJA 2VPZA 5GLFA 1CR5A 1E60A 4AOKB 3GTOA 1FDOA 1KQFA 2NYAA 3TIWA 3HU2A 1G8KA 1PQHA 1Q16A 5DYIA 1TWAA 1TWFA 5EPPA 3PLXB 2B63A 1CZ4A 2DMRA 1Y4ZA 4D7ZB 5T5ID 2E2HA 4C2MA 1QCSA 2WB1A 4AZDA 1H5NA 3FKIA 2YU9A 1PT0A 1SIWA 3HU3A 3QQ7A 3OUGA 1R9TA 1R27A 3QQ8A 4KLNA 4RV0A 4DMRA 1DMSA 1PPYA 3HKZA 1E32A 1VC3B 2EEOB 1E61A 4KDIA 2JIQA 1AW8B 5FTMA 3GTKA 2V45A 3CF2A 2V3VA 2C45A
chains in the Genus database with same CATH superfamily
3GTPA 2O5JD 2KQAA 1OA7A 2JA6A 1PT1A 1WLFA 2JIPA 4GA5A 4FFTA 3SULA 5FTKA 1E5VA 2IV2X 1K83A 3X2PA 2PMZA 5FTLA 4FG4A 2A6HD 1BW3A 4FERA 1CZ5A 1UHEA 3QC8A 1KQGA 1I3QA 1BW4A 1PYUB 3IR7A 2NAPA 1DMRA 2A68D 2GAEA 3DMRA 3O5AA 5GLYA 2R92A 4AONB 3X2JA 3ML1A 4JS7A 1HD5A 1OGYA 5FTJA 4AAYA 3GTQA 1UHDA 2HCZX 1PYQA 5C18A 1S3SA 2WAQA 3M3GA 2NVXA 4AYBA 1Y5IA 4ENGA 2JIOA 3ENGA 4L48A 2PICA 1YLEA 3SUJA 4JJOA 1Y1WA 3X2OA 3HU1A 1N10A 3IR6A 1H0HA 1R7RA 1AA6A 2JIRA 1EU1A 4KODA 5FTNA 1IW7D 1Y1VA 2BE5D 3X2NA 1E18A 2JA5A 2KI8A 3IR5A 2JA7A 3X2IA 1TMOA 1TWHA 3CQZA 2PJHB 1FDIA 1SFOA 2VPYA 3GTMA 2NVYA 2E7ZA 1WCMA 2A69D 1PQFA 2VPWA 3GTLA 3GTGA 4CRZA 1ZC1A 2BH0A 4QIWA 5DYGA 5H4UA 2PJJA 1TWCA 4CRYG 3H0GA 2VPXA 4AVRA 4KDLA 5C1BA 1TWGA 2VUMA 4FG2A 1G8JA 4JP6A 2R7ZA 4GA6A 1OA9A 1PQEA 3TM7B 4KO8A 1L8FA 1QDNA 2R93A 2Y0SA 2JIMA 4JP7A 2E2IA 4CS0A 4NOHA 5T5MD 5B6CA 2CW0D 1I50A 3QWZA 3GTJA 2VPZA 5GLFA 1CR5A 1E60A 3X2HA 3D30A 4AOKB 3GTOA 1FDOA 1WC2A 3SUKA 2NYAA 3SUMA 1KQFA 3TIWA 5GLXA 3HU2A 2G5DA 1G8KA 1PQHA 1Q16A 5DYIA 1TWAA 1TWFA 5EPPA 1SMYD 3PLXB 2YUJA 2B63A 1CZ4A 2DMRA 2PI8A 2ENGA 1Y4ZA 4D7ZB 5T5ID 4ZM7A 3CZBA 2E2HA 4C2MA 1QCSA 2WB1A 3X2GA 4AZDA 2PNWA 3X2LA 1H5NA 3FKIA 4JCWA 2YU9A 1PT0A 1SIWA 3HU3A 3QQ7A 3OUGA 1R9TA 1YNND 1R27A 3QQ8A 4KLNA 4RV0A 4DMRA 1DMSA 1ZYRD 1PPYA 3HKZA 3X2MA 1E32A 2A6ED 1VC3B 2EEOB 2AE0X 1E61A 4KDIA 5GM9A 2JIQA 1AW8B 2G6GA 5FTMA 1YNJD 3X2KA 3GTKA 2V45A 3CF2A 2V3VA 2C45A
chains in the Genus database with same CATH topology
3GTPA 2O5JD 2JA6A 1PT1A 1WLFA 2JIPA 4GA5A 5FTKA 1E5VA 2IV2X 1K83A 2PMZA 5FTLA 2A6HD 1CZ5A 1UHEA 3QC8A 1KQGA 1I3QA 1PYUB 3IR7A 2NAPA 1DMRA 2A68D 2GAEA 3DMRA 3O5AA 2R92A 4AONB 3ML1A 1OGYA 5FTJA 3GTQA 4AAYA 1UHDA 5C18A 1PYQA 1S3SA 2WAQA 2NVXA 4AYBA 1Y5IA 2JIOA 2PICA 1YLEA 1Y1WA 3HU1A 3IR6A 1H0HA 1R7RA 1AA6A 2JIRA 1EU1A 4KODA 5FTNA 1IW7D 1Y1VA 2BE5D 1E18A 2JA5A 2KI8A 3IR5A 2JA7A 1TMOA 1TWHA 3CQZA 2PJHB 1FDIA 1SFOA 2VPYA 3GTMA 2NVYA 2E7ZA 1WCMA 2A69D 1PQFA 2VPWA 3GTLA 3GTGA 4CRZA 1ZC1A 4QIWA 5DYGA 2PJJA 1TWCA 4CRYG 3H0GA 2VPXA 4KDLA 5C1BA 1TWGA 2VUMA 1G8JA 2R7ZA 4GA6A 1PQEA 3TM7B 4KO8A 1QDNA 2R93A 2Y0SA 2JIMA 2E2IA 4CS0A 4NOHA 5T5MD 5B6CA 2CW0D 1I50A 3QWZA 3GTJA 2VPZA 5GLFA 1CR5A 1E60A 4AOKB 3GTOA 1FDOA 1KQFA 2NYAA 3TIWA 3HU2A 2G5DA 1G8KA 1PQHA 1Q16A 5DYIA 1TWAA 1TWFA 5EPPA 1SMYD 3PLXB 2YUJA 2B63A 1CZ4A 2DMRA 2PI8A 1Y4ZA 4D7ZB 5T5ID 3CZBA 2E2HA 4C2MA 1QCSA 2WB1A 4AZDA 2PNWA 1H5NA 3FKIA 2YU9A 1PT0A 1SIWA 3HU3A 3QQ7A 3OUGA 1R9TA 1YNND 1R27A 3QQ8A 4KLNA 4RV0A 4DMRA 1DMSA 1ZYRD 1PPYA 3HKZA 1E32A 2A6ED 1VC3B 2EEOB 2AE0X 1E61A 4KDIA 2JIQA 1AW8B 2G6GA 5FTMA 1YNJD 3GTKA 2V45A 3CF2A 2V3VA 2C45A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GTP A;  2JA6 A;  1PT1 A;  1WLF A;  2JIP A;  4GA5 A;  5FTK A;  1E5V A;  2IV2 X;  1K83 A;  2PMZ A;  5FTL A;  1CZ5 A;  1UHE A;  3QC8 A;  1KQG A;  1I3Q A;  1PYU B;  3IR7 A;  2NAP A;  1DMR A;  3DMR A;  3O5A A;  2R92 A;  4AON B;  3ML1 A;  1OGY A;  5FTJ A;  3GTQ A;  4AAY A;  1UHD A;  5C18 A;  1PYQ A;  1S3S A;  2WAQ A;  2NVX A;  4AYB A;  1Y5I A;  2JIO A;  1Y1W A;  1YLE A;  3HU1 A;  3IR6 A;  1H0H A;  1R7R A;  1AA6 A;  2JIR A;  1EU1 A;  4KOD A;  5FTN A;  1IW7 D;  1Y1V A;  1E18 A;  2JA5 A;  2KI8 A;  3IR5 A;  2JA7 A;  1TMO A;  1TWH A;  3CQZ A;  2PJH B;  1FDI A;  1SFO A;  2VPY A;  3GTM A;  2NVY A;  2E7Z A;  1WCM A;  1PQF A;  2VPW A;  3GTL A;  3GTG A;  4CRZ A;  4QIW A;  5DYG A;  1TWC A;  4CRY G;  3H0G A;  2VPX A;  4KDL A;  5C1B A;  1TWG A;  2VUM A;  1G8J A;  2R7Z A;  4GA6 A;  1PQE A;  3TM7 B;  4KO8 A;  1QDN A;  2R93 A;  2Y0S A;  2JIM A;  2E2I A;  4CS0 A;  5T5M D;  5B6C A;  1I50 A;  3QWZ A;  3GTJ A;  2VPZ A;  5GLF A;  1CR5 A;  1E60 A;  4AOK B;  3GTO A;  1FDO A;  1KQF A;  2NYA A;  3TIW A;  3HU2 A;  1G8K A;  1PQH A;  1Q16 A;  5DYI A;  1TWA A;  1TWF A;  5EPP A;  3PLX B;  2B63 A;  1CZ4 A;  2DMR A;  1Y4Z A;  4D7Z B;  5T5I D;  2E2H A;  4C2M A;  1QCS A;  2WB1 A;  4AZD A;  1H5N A;  3FKI A;  2YU9 A;  1PT0 A;  1SIW A;  3HU3 A;  3QQ7 A;  3OUG A;  1R9T A;  1R27 A;  3QQ8 A;  4KLN A;  4RV0 A;  4DMR A;  1DMS A;  1PPY A;  3HKZ A;  1E32 A;  1VC3 B;  2EEO B;  1E61 A;  4KDI A;  2JIQ A;  1AW8 B;  5FTM A;  3GTK A;  2V45 A;  3CF2 A;  2V3V A;  2C45 A; 
#chains in the Genus database with same CATH topology
 3GTP A;  2O5J D;  2KQA A;  1OA7 A;  2JA6 A;  1PT1 A;  1WLF A;  2JIP A;  4GA5 A;  4FFT A;  3SUL A;  5FTK A;  1E5V A;  2IV2 X;  1K83 A;  3X2P A;  2PMZ A;  5FTL A;  4FG4 A;  2A6H D;  1BW3 A;  4FER A;  1CZ5 A;  1UHE A;  3QC8 A;  1KQG A;  1I3Q A;  1BW4 A;  1PYU B;  3IR7 A;  2NAP A;  1DMR A;  2A68 D;  2GAE A;  3DMR A;  3O5A A;  5GLY A;  2R92 A;  4AON B;  3X2J A;  3ML1 A;  4JS7 A;  1HD5 A;  1OGY A;  5FTJ A;  4AAY A;  3GTQ A;  1UHD A;  2HCZ X;  1PYQ A;  5C18 A;  1S3S A;  2WAQ A;  3M3G A;  2NVX A;  4AYB A;  1Y5I A;  4ENG A;  2JIO A;  3ENG A;  4L48 A;  2PIC A;  1YLE A;  3SUJ A;  4JJO A;  1Y1W A;  3X2O A;  3HU1 A;  1N10 A;  3IR6 A;  1H0H A;  1R7R A;  1AA6 A;  2JIR A;  1EU1 A;  4KOD A;  5FTN A;  1IW7 D;  1Y1V A;  2BE5 D;  3X2N A;  1E18 A;  2JA5 A;  2KI8 A;  3IR5 A;  2JA7 A;  3X2I A;  1TMO A;  1TWH A;  3CQZ A;  2PJH B;  1FDI A;  1SFO A;  2VPY A;  3GTM A;  2NVY A;  2E7Z A;  1WCM A;  2A69 D;  1PQF A;  2VPW A;  3GTL A;  3GTG A;  4CRZ A;  1ZC1 A;  2BH0 A;  4QIW A;  5DYG A;  5H4U A;  2PJJ A;  1TWC A;  4CRY G;  3H0G A;  2VPX A;  4AVR A;  4KDL A;  5C1B A;  1TWG A;  2VUM A;  4FG2 A;  1G8J A;  4JP6 A;  2R7Z A;  4GA6 A;  1OA9 A;  1PQE A;  3TM7 B;  4KO8 A;  1L8F A;  1QDN A;  2R93 A;  2Y0S A;  2JIM A;  4JP7 A;  2E2I A;  4CS0 A;  4NOH A;  5T5M D;  5B6C A;  2CW0 D;  1I50 A;  3QWZ A;  3GTJ A;  2VPZ A;  5GLF A;  1CR5 A;  1E60 A;  3X2H A;  3D30 A;  4AOK B;  3GTO A;  1FDO A;  1WC2 A;  3SUK A;  2NYA A;  3SUM A;  1KQF A;  3TIW A;  5GLX A;  3HU2 A;  2G5D A;  1G8K A;  1PQH A;  1Q16 A;  5DYI A;  1TWA A;  1TWF A;  5EPP A;  1SMY D;  3PLX B;  2YUJ A;  2B63 A;  1CZ4 A;  2DMR A;  2PI8 A;  2ENG A;  1Y4Z A;  4D7Z B;  5T5I D;  4ZM7 A;  3CZB A;  2E2H A;  4C2M A;  1QCS A;  2WB1 A;  3X2G A;  4AZD A;  2PNW A;  3X2L A;  1H5N A;  3FKI A;  4JCW A;  2YU9 A;  1PT0 A;  1SIW A;  3HU3 A;  3QQ7 A;  3OUG A;  1R9T A;  1YNN D;  1R27 A;  3QQ8 A;  4KLN A;  4RV0 A;  4DMR A;  1DMS A;  1ZYR D;  1PPY A;  3HKZ A;  3X2M A;  1E32 A;  2A6E D;  1VC3 B;  2EEO B;  2AE0 X;  1E61 A;  4KDI A;  5GM9 A;  2JIQ A;  1AW8 B;  2G6G A;  5FTM A;  1YNJ D;  3X2K A;  3GTK A;  2V45 A;  3CF2 A;  2V3V A;  2C45 A; 
#chains in the Genus database with same CATH homology
 3GTP A;  2O5J D;  2JA6 A;  1PT1 A;  1WLF A;  2JIP A;  4GA5 A;  5FTK A;  1E5V A;  2IV2 X;  1K83 A;  2PMZ A;  5FTL A;  2A6H D;  1CZ5 A;  1UHE A;  3QC8 A;  1KQG A;  1I3Q A;  1PYU B;  3IR7 A;  2NAP A;  1DMR A;  2A68 D;  2GAE A;  3DMR A;  3O5A A;  2R92 A;  4AON B;  3ML1 A;  1OGY A;  5FTJ A;  3GTQ A;  4AAY A;  1UHD A;  5C18 A;  1PYQ A;  1S3S A;  2WAQ A;  2NVX A;  4AYB A;  1Y5I A;  2JIO A;  2PIC A;  1YLE A;  1Y1W A;  3HU1 A;  3IR6 A;  1H0H A;  1R7R A;  1AA6 A;  2JIR A;  1EU1 A;  4KOD A;  5FTN A;  1IW7 D;  1Y1V A;  2BE5 D;  1E18 A;  2JA5 A;  2KI8 A;  3IR5 A;  2JA7 A;  1TMO A;  1TWH A;  3CQZ A;  2PJH B;  1FDI A;  1SFO A;  2VPY A;  3GTM A;  2NVY A;  2E7Z A;  1WCM A;  2A69 D;  1PQF A;  2VPW A;  3GTL A;  3GTG A;  4CRZ A;  1ZC1 A;  4QIW A;  5DYG A;  2PJJ A;  1TWC A;  4CRY G;  3H0G A;  2VPX A;  4KDL A;  5C1B A;  1TWG A;  2VUM A;  1G8J A;  2R7Z A;  4GA6 A;  1PQE A;  3TM7 B;  4KO8 A;  1QDN A;  2R93 A;  2Y0S A;  2JIM A;  2E2I A;  4CS0 A;  4NOH A;  5T5M D;  5B6C A;  2CW0 D;  1I50 A;  3QWZ A;  3GTJ A;  2VPZ A;  5GLF A;  1CR5 A;  1E60 A;  4AOK B;  3GTO A;  1FDO A;  1KQF A;  2NYA A;  3TIW A;  3HU2 A;  2G5D A;  1G8K A;  1PQH A;  1Q16 A;  5DYI A;  1TWA A;  1TWF A;  5EPP A;  1SMY D;  3PLX B;  2YUJ A;  2B63 A;  1CZ4 A;  2DMR A;  2PI8 A;  1Y4Z A;  4D7Z B;  5T5I D;  3CZB A;  2E2H A;  4C2M A;  1QCS A;  2WB1 A;  4AZD A;  2PNW A;  1H5N A;  3FKI A;  2YU9 A;  1PT0 A;  1SIW A;  3HU3 A;  3QQ7 A;  3OUG A;  1R9T A;  1YNN D;  1R27 A;  3QQ8 A;  4KLN A;  4RV0 A;  4DMR A;  1DMS A;  1ZYR D;  1PPY A;  3HKZ A;  1E32 A;  2A6E D;  1VC3 B;  2EEO B;  2AE0 X;  1E61 A;  4KDI A;  2JIQ A;  1AW8 B;  2G6G A;  5FTM A;  1YNJ D;  3GTK A;  2V45 A;  3CF2 A;  2V3V A;  2C45 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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