1PQEA

S25a mutant of pyruvoyl dependent aspartate decarboxylase
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
117
structure length
117
Chain Sequence
MIRTMLQGKLHRVKVTHADLHYEGACAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
source organism Escherichia coli
publication title Structural constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
molecule keywords Aspartate 1-decarboxylase
total genus 35
structure length 117
sequence length 117
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-06-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1pqeA00
2KI8A 3TM7B 1Y1VA 2E2HA 2JIRA 1Y1WA 1PT1A 1CR5A 2VPWA 2WAQA 3QWZA 1E32A 2JIMA 3GTOA 1Y4ZA 4CRZA 3IR7A 1YLEA 1AA6A 1R27A 1CZ4A 2NYAA 4KODA 2B63A 1QCSA 1SIWA 3H0GA 2R92A 2VUMA 1FDIA 5EPPA 4GA6A 1Y5IA 3HKZA 2EEOB 1S3SA 4C2MA 1VC3B 2E7ZA 3GTPA 1KQFA 2JA5A 4AZDA 4DMRA 1TWFA 2E2IA 1CZ5A 3GTGA 2JIQA 2Y0SA 1Q16A 4CS0A 3GTLA 4AONB 4GA5A 5DYIA 3GTMA 4D7ZB 1G8JA 5FTNA 1WCMA 4KDLA 4KDIA 1EU1A 1WLFA 1TWHA 2PJHB 3O5AA 1IW7D 2JIOA 3GTQA 1PPYA 3DMRA 5FTLA 2VPYA 1PQEA 1I50A 4RV0A 2VPXA 1E61A 1DMRA 2NVYA 4AOKB 3PLXB 2YU9A 5B6CA 3IR5A 3QQ8A 1FDOA 1I3QA 2R7ZA 1UHEA 5DYGA 1G8KA 1K83A 3TIWA 2JA7A 4CRYG 4AAYA 2V3VA 2IV2X 1DMSA 3HU1A 3GTKA 1R7RA 2VPZA 3CF2A 1TWCA 5FTKA 2R93A 2NVXA 1QDNA 3QQ7A 1R9TA 1H0HA 1TWAA 5C1BA 1PQFA 2C45A 3OUGA 3GTJA 3CQZA 1H5NA 5T5ID 1E18A 3HU3A 5GLFA 1KQGA 1OGYA 2V45A 5FTMA 1SFOA 2JIPA 5C18A 5FTJA 1TWGA 3HU2A 1TMOA 2NAPA 3QC8A 4QIWA 3ML1A 4KLNA 3IR6A 2DMRA 1E60A 1PYUB 4KO8A 2WB1A 2PMZA 1PYQA 3FKIA 1AW8B 5T5MD 4AYBA 1E5VA 1UHDA 1PQHA 1PT0A 2JA6A
chains in the Genus database with same CATH superfamily
2KI8A 3TM7B 1N10A 1Y1VA 2E2HA 2JIRA 1Y1WA 1PT1A 3SULA 1CR5A 2VPWA 2WAQA 3QWZA 3SUJA 1E32A 2JIMA 3GTOA 1Y4ZA 4CRZA 3IR7A 1YLEA 4FG2A 3SUMA 1AA6A 2KQAA 1R27A 2O5JD 1CZ4A 2NYAA 4KODA 5H4UA 2B63A 1QCSA 1SIWA 3H0GA 2R92A 2VUMA 1FDIA 2G5DA 5EPPA 1SMYD 1L8FA 4GA6A 1Y5IA 3HKZA 2EEOB 1S3SA 3X2PA 3X2LA 1VC3B 2E7ZA 4C2MA 1KQFA 3GTPA 2JA5A 4AZDA 4DMRA 1TWFA 2E2IA 1WC2A 1CZ5A 3GTGA 2JIQA 2Y0SA 1Q16A 4FERA 4CS0A 3GTLA 4AONB 4GA5A 2PNWA 2A6ED 5DYIA 3GTMA 3X2KA 4D7ZB 1G8JA 5FTNA 1HD5A 1OA7A 1WCMA 3CZBA 1EU1A 1WLFA 1TWHA 3M3GA 1ZYRD 4KDLA 4KDIA 2PJHB 1YNJD 3O5AA 1IW7D 4JP7A 2JIOA 3GTQA 1PPYA 3DMRA 5FTLA 2HCZX 2VPYA 1PQEA 1I50A 1BW3A 4RV0A 2A6HD 2VPXA 5GLXA 1E61A 1DMRA 1BW4A 2NVYA 4AOKB 3PLXB 2YU9A 5B6CA 3IR5A 5GM9A 3QQ8A 4FG4A 1FDOA 1I3QA 2R7ZA 1UHEA 5DYGA 2G6GA 4NOHA 1G8KA 2YUJA 4FFTA 1K83A 3TIWA 4ZM7A 1ZC1A 2JA7A 4CRYG 4AAYA 2V3VA 2IV2X 4JP6A 5GLYA 1DMSA 3HU1A 2A69D 3GTKA 3ENGA 2A68D 1R7RA 4JJOA 2VPZA 3CF2A 1TWCA 5FTKA 4AVRA 2R93A 2ENGA 2NVXA 2CW0D 1QDNA 3QQ7A 4JS7A 1R9TA 1H0HA 2PI8A 2PJJA 1TWAA 4JCWA 1PQFA 2C45A 3OUGA 5C1BA 3GTJA 3D30A 1OA9A 3X2IA 2BH0A 3CQZA 1H5NA 5T5ID 4ENGA 1E18A 2BE5D 2GAEA 3HU3A 1OGYA 2V45A 5FTMA 5GLFA 3X2JA 1KQGA 1SFOA 2JIPA 5C18A 5FTJA 1TWGA 3HU2A 2AE0X 1TMOA 2NAPA 3QC8A 4QIWA 3ML1A 4KLNA 3IR6A 3X2GA 2DMRA 1E60A 1PYUB 4KO8A 2WB1A 3X2NA 3X2HA 2PMZA 1PYQA 1YNND 4L48A 3FKIA 1AW8B 3X2MA 3X2OA 5T5MD 2PICA 4AYBA 1E5VA 3SUKA 1UHDA 1PQHA 1PT0A 2JA6A
chains in the Genus database with same CATH topology
2KI8A 3TM7B 1Y1VA 2E2HA 2JIRA 1Y1WA 1PT1A 1CR5A 2VPWA 2WAQA 3QWZA 1E32A 2JIMA 3GTOA 1Y4ZA 4CRZA 3IR7A 1YLEA 1AA6A 1R27A 2O5JD 1CZ4A 2NYAA 4KODA 2B63A 1QCSA 1SIWA 3H0GA 2R92A 2VUMA 1FDIA 2G5DA 5EPPA 1SMYD 4GA6A 1Y5IA 3HKZA 2EEOB 1S3SA 4C2MA 1VC3B 2E7ZA 3GTPA 1KQFA 2JA5A 4AZDA 4DMRA 1TWFA 2E2IA 1CZ5A 3GTGA 2JIQA 2Y0SA 1Q16A 4CS0A 3GTLA 4AONB 4GA5A 2PNWA 2A6ED 5DYIA 3GTMA 4D7ZB 1G8JA 5FTNA 1WCMA 4KDLA 3CZBA 1EU1A 1WLFA 1TWHA 4KDIA 1ZYRD 2PJHB 1YNJD 3O5AA 1IW7D 2JIOA 3GTQA 1PPYA 3DMRA 5FTLA 2VPYA 1PQEA 1I50A 4RV0A 2A6HD 2VPXA 1E61A 1DMRA 2NVYA 4AOKB 3PLXB 2YU9A 5B6CA 3IR5A 3QQ8A 1FDOA 1I3QA 2R7ZA 1UHEA 5DYGA 2G6GA 4NOHA 1G8KA 2YUJA 1K83A 3TIWA 1ZC1A 2JA7A 4CRYG 4AAYA 2V3VA 2IV2X 1DMSA 3HU1A 2A69D 3GTKA 2A68D 1R7RA 2VPZA 3CF2A 1TWCA 5FTKA 2R93A 2NVXA 2CW0D 1QDNA 3QQ7A 1R9TA 1H0HA 2PI8A 2PJJA 1TWAA 5C1BA 1PQFA 2C45A 3OUGA 3GTJA 3CQZA 1H5NA 5T5ID 1E18A 2BE5D 2GAEA 3HU3A 1OGYA 2V45A 5FTMA 5GLFA 1KQGA 1SFOA 2JIPA 5C18A 5FTJA 1TWGA 3HU2A 2AE0X 1TMOA 2NAPA 3QC8A 4QIWA 3ML1A 4KLNA 3IR6A 2DMRA 1E60A 1PYUB 4KO8A 2WB1A 2PMZA 1PYQA 1YNND 3FKIA 1AW8B 5T5MD 2PICA 4AYBA 1E5VA 1UHDA 1PQHA 1PT0A 2JA6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KI8 A;  3TM7 B;  1Y1V A;  2E2H A;  2JIR A;  1Y1W A;  1PT1 A;  1CR5 A;  2VPW A;  2WAQ A;  3QWZ A;  1E32 A;  2JIM A;  3GTO A;  1Y4Z A;  4CRZ A;  3IR7 A;  1YLE A;  1AA6 A;  1R27 A;  1CZ4 A;  2NYA A;  4KOD A;  2B63 A;  1QCS A;  1SIW A;  3H0G A;  2R92 A;  2VUM A;  1FDI A;  5EPP A;  4GA6 A;  1Y5I A;  3HKZ A;  2EEO B;  1S3S A;  4C2M A;  1VC3 B;  2E7Z A;  3GTP A;  1KQF A;  2JA5 A;  4AZD A;  4DMR A;  1TWF A;  2E2I A;  1CZ5 A;  3GTG A;  2JIQ A;  2Y0S A;  1Q16 A;  4CS0 A;  3GTL A;  4AON B;  4GA5 A;  5DYI A;  3GTM A;  4D7Z B;  1G8J A;  5FTN A;  1WCM A;  4KDL A;  4KDI A;  1EU1 A;  1WLF A;  1TWH A;  2PJH B;  3O5A A;  1IW7 D;  2JIO A;  3GTQ A;  1PPY A;  3DMR A;  5FTL A;  2VPY A;  1PQE A;  1I50 A;  4RV0 A;  2VPX A;  1E61 A;  1DMR A;  2NVY A;  4AOK B;  3PLX B;  2YU9 A;  5B6C A;  3IR5 A;  3QQ8 A;  1FDO A;  1I3Q A;  2R7Z A;  1UHE A;  5DYG A;  1G8K A;  1K83 A;  3TIW A;  2JA7 A;  4CRY G;  4AAY A;  2V3V A;  2IV2 X;  1DMS A;  3HU1 A;  3GTK A;  1R7R A;  2VPZ A;  3CF2 A;  1TWC A;  5FTK A;  2R93 A;  2NVX A;  1QDN A;  3QQ7 A;  1R9T A;  1H0H A;  1TWA A;  5C1B A;  1PQF A;  2C45 A;  3OUG A;  3GTJ A;  3CQZ A;  1H5N A;  5T5I D;  1E18 A;  3HU3 A;  5GLF A;  1KQG A;  1OGY A;  2V45 A;  5FTM A;  1SFO A;  2JIP A;  5C18 A;  5FTJ A;  1TWG A;  3HU2 A;  1TMO A;  2NAP A;  3QC8 A;  4QIW A;  3ML1 A;  4KLN A;  3IR6 A;  2DMR A;  1E60 A;  1PYU B;  4KO8 A;  2WB1 A;  2PMZ A;  1PYQ A;  3FKI A;  1AW8 B;  5T5M D;  4AYB A;  1E5V A;  1UHD A;  1PQH A;  1PT0 A;  2JA6 A; 
#chains in the Genus database with same CATH topology
 2KI8 A;  3TM7 B;  1N10 A;  1Y1V A;  2E2H A;  2JIR A;  1Y1W A;  1PT1 A;  3SUL A;  1CR5 A;  2VPW A;  2WAQ A;  3QWZ A;  3SUJ A;  1E32 A;  2JIM A;  3GTO A;  1Y4Z A;  4CRZ A;  3IR7 A;  1YLE A;  4FG2 A;  3SUM A;  1AA6 A;  2KQA A;  1R27 A;  2O5J D;  1CZ4 A;  2NYA A;  4KOD A;  5H4U A;  2B63 A;  1QCS A;  1SIW A;  3H0G A;  2R92 A;  2VUM A;  1FDI A;  2G5D A;  5EPP A;  1SMY D;  1L8F A;  4GA6 A;  1Y5I A;  3HKZ A;  2EEO B;  1S3S A;  3X2P A;  3X2L A;  1VC3 B;  2E7Z A;  4C2M A;  1KQF A;  3GTP A;  2JA5 A;  4AZD A;  4DMR A;  1TWF A;  2E2I A;  1WC2 A;  1CZ5 A;  3GTG A;  2JIQ A;  2Y0S A;  1Q16 A;  4FER A;  4CS0 A;  3GTL A;  4AON B;  4GA5 A;  2PNW A;  2A6E D;  5DYI A;  3GTM A;  3X2K A;  4D7Z B;  1G8J A;  5FTN A;  1HD5 A;  1OA7 A;  1WCM A;  3CZB A;  1EU1 A;  1WLF A;  1TWH A;  3M3G A;  1ZYR D;  4KDL A;  4KDI A;  2PJH B;  1YNJ D;  3O5A A;  1IW7 D;  4JP7 A;  2JIO A;  3GTQ A;  1PPY A;  3DMR A;  5FTL A;  2HCZ X;  2VPY A;  1PQE A;  1I50 A;  1BW3 A;  4RV0 A;  2A6H D;  2VPX A;  5GLX A;  1E61 A;  1DMR A;  1BW4 A;  2NVY A;  4AOK B;  3PLX B;  2YU9 A;  5B6C A;  3IR5 A;  5GM9 A;  3QQ8 A;  4FG4 A;  1FDO A;  1I3Q A;  2R7Z A;  1UHE A;  5DYG A;  2G6G A;  4NOH A;  1G8K A;  2YUJ A;  4FFT A;  1K83 A;  3TIW A;  4ZM7 A;  1ZC1 A;  2JA7 A;  4CRY G;  4AAY A;  2V3V A;  2IV2 X;  4JP6 A;  5GLY A;  1DMS A;  3HU1 A;  2A69 D;  3GTK A;  3ENG A;  2A68 D;  1R7R A;  4JJO A;  2VPZ A;  3CF2 A;  1TWC A;  5FTK A;  4AVR A;  2R93 A;  2ENG A;  2NVX A;  2CW0 D;  1QDN A;  3QQ7 A;  4JS7 A;  1R9T A;  1H0H A;  2PI8 A;  2PJJ A;  1TWA A;  4JCW A;  1PQF A;  2C45 A;  3OUG A;  5C1B A;  3GTJ A;  3D30 A;  1OA9 A;  3X2I A;  2BH0 A;  3CQZ A;  1H5N A;  5T5I D;  4ENG A;  1E18 A;  2BE5 D;  2GAE A;  3HU3 A;  1OGY A;  2V45 A;  5FTM A;  5GLF A;  3X2J A;  1KQG A;  1SFO A;  2JIP A;  5C18 A;  5FTJ A;  1TWG A;  3HU2 A;  2AE0 X;  1TMO A;  2NAP A;  3QC8 A;  4QIW A;  3ML1 A;  4KLN A;  3IR6 A;  3X2G A;  2DMR A;  1E60 A;  1PYU B;  4KO8 A;  2WB1 A;  3X2N A;  3X2H A;  2PMZ A;  1PYQ A;  1YNN D;  4L48 A;  3FKI A;  1AW8 B;  3X2M A;  3X2O A;  5T5M D;  2PIC A;  4AYB A;  1E5V A;  3SUK A;  1UHD A;  1PQH A;  1PT0 A;  2JA6 A; 
#chains in the Genus database with same CATH homology
 2KI8 A;  3TM7 B;  1Y1V A;  2E2H A;  2JIR A;  1Y1W A;  1PT1 A;  1CR5 A;  2VPW A;  2WAQ A;  3QWZ A;  1E32 A;  2JIM A;  3GTO A;  1Y4Z A;  4CRZ A;  3IR7 A;  1YLE A;  1AA6 A;  1R27 A;  2O5J D;  1CZ4 A;  2NYA A;  4KOD A;  2B63 A;  1QCS A;  1SIW A;  3H0G A;  2R92 A;  2VUM A;  1FDI A;  2G5D A;  5EPP A;  1SMY D;  4GA6 A;  1Y5I A;  3HKZ A;  2EEO B;  1S3S A;  4C2M A;  1VC3 B;  2E7Z A;  3GTP A;  1KQF A;  2JA5 A;  4AZD A;  4DMR A;  1TWF A;  2E2I A;  1CZ5 A;  3GTG A;  2JIQ A;  2Y0S A;  1Q16 A;  4CS0 A;  3GTL A;  4AON B;  4GA5 A;  2PNW A;  2A6E D;  5DYI A;  3GTM A;  4D7Z B;  1G8J A;  5FTN A;  1WCM A;  4KDL A;  3CZB A;  1EU1 A;  1WLF A;  1TWH A;  4KDI A;  1ZYR D;  2PJH B;  1YNJ D;  3O5A A;  1IW7 D;  2JIO A;  3GTQ A;  1PPY A;  3DMR A;  5FTL A;  2VPY A;  1PQE A;  1I50 A;  4RV0 A;  2A6H D;  2VPX A;  1E61 A;  1DMR A;  2NVY A;  4AOK B;  3PLX B;  2YU9 A;  5B6C A;  3IR5 A;  3QQ8 A;  1FDO A;  1I3Q A;  2R7Z A;  1UHE A;  5DYG A;  2G6G A;  4NOH A;  1G8K A;  2YUJ A;  1K83 A;  3TIW A;  1ZC1 A;  2JA7 A;  4CRY G;  4AAY A;  2V3V A;  2IV2 X;  1DMS A;  3HU1 A;  2A69 D;  3GTK A;  2A68 D;  1R7R A;  2VPZ A;  3CF2 A;  1TWC A;  5FTK A;  2R93 A;  2NVX A;  2CW0 D;  1QDN A;  3QQ7 A;  1R9T A;  1H0H A;  2PI8 A;  2PJJ A;  1TWA A;  5C1B A;  1PQF A;  2C45 A;  3OUG A;  3GTJ A;  3CQZ A;  1H5N A;  5T5I D;  1E18 A;  2BE5 D;  2GAE A;  3HU3 A;  1OGY A;  2V45 A;  5FTM A;  5GLF A;  1KQG A;  1SFO A;  2JIP A;  5C18 A;  5FTJ A;  1TWG A;  3HU2 A;  2AE0 X;  1TMO A;  2NAP A;  3QC8 A;  4QIW A;  3ML1 A;  4KLN A;  3IR6 A;  2DMR A;  1E60 A;  1PYU B;  4KO8 A;  2WB1 A;  2PMZ A;  1PYQ A;  1YNN D;  3FKI A;  1AW8 B;  5T5M D;  2PIC A;  4AYB A;  1E5V A;  1UHD A;  1PQH A;  1PT0 A;  2JA6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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