1PQEA

S25a mutant of pyruvoyl dependent aspartate decarboxylase
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
117
structure length
117
Chain Sequence
MIRTMLQGKLHRVKVTHADLHYEGACAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Aspartate 1-decarboxylase
publication title Structural constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
source organism Escherichia coli
molecule tags Lyase
total genus 35
structure length 117
sequence length 117
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-06-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1pqeA00
2JIQA 2VPXA 5EPPA 1OGYA 2PJHB 1QCSA 4KDLA 2VPZA 5DYIA 1SIWA 2JIPA 3QC8A 3DMRA 4QIWA 4CRYG 1AW8B 1PYQA 4AOKB 1TMOA 1VC3B 3GTMA 1G8JA 2NYAA 4AYBA 1SFOA 1DMRA 1H5NA 1K83A 1S3SA 4D7ZB 2R93A 1PQHA 3HU2A 3GTGA 5FTJA 2EEOB 1E18A 3CQZA 3IR7A 3PLXB 2C45A 4GA5A 3GTLA 1H0HA 2NVYA 1AA6A 3GTJA 2VPWA 1CZ4A 1E5VA 2R92A 3TM7B 1WCMA 5B6CA 3GTQA 2JA5A 3OUGA 2DMRA 2E2HA 5T5MD 4AZDA 2B63A 1DMSA 3IR6A 1PYUB 1UHEA 5FTLA 1EU1A 1Y1VA 3ML1A 2WB1A 2JA7A 5C1BA 3QQ7A 5T5ID 1TWHA 2NAPA 3GTPA 1Q16A 3TIWA 1R9TA 1E32A 1IW7D 1TWGA 1TWFA 1FDIA 2JA6A 2E7ZA 1E61A 1Y5IA 3FKIA 1KQFA 2WAQA 2R7ZA 3HKZA 2JIRA 2E2IA 1Y4ZA 2Y0SA 3QWZA 4AAYA 3CF2A 3QQ8A 1QDNA 4AONB 4KODA 1CZ5A 3GTKA 1PQEA 2V3VA 1G8KA 2YU9A 4C2MA 1R7RA 4DMRA 2V45A 1UHDA 1Y1WA 3HU1A 1TWAA 1PPYA 2IV2X 1I50A 1YLEA 3H0GA 2NVXA 5FTKA 4RV0A 4GA6A 1PT0A 4CRZA 1KQGA 2PMZA 5C18A 1PT1A 1R27A 3O5AA 3IR5A 2KI8A 1CR5A 1WLFA 3HU3A 2JIMA 1I3QA 5FTMA 2VPYA 4CS0A 4KDIA 2VUMA 1TWCA 2JIOA 5DYGA 3GTOA 1E60A 1FDOA 1PQFA 5FTNA 5GLFA 4KO8A 4KLNA
chains in the Genus database with same CATH superfamily
2JIQA 2VPXA 5EPPA 3SUMA 1OGYA 2PJHB 1QCSA 4KDLA 2ENGA 4JP6A 2VPZA 5DYIA 1ZYRD 1SIWA 2JIPA 3QC8A 3DMRA 2PNWA 4QIWA 1BW4A 2BE5D 4CRYG 1AW8B 3SULA 1PYQA 4AOKB 4ENGA 1TMOA 1VC3B 3GTMA 1G8JA 2NYAA 4AYBA 1SFOA 1DMRA 1BW3A 2HCZX 2YUJA 3X2KA 1H5NA 1K83A 1S3SA 4D7ZB 3SUKA 2R93A 2O5JD 1PQHA 3HU2A 3GTGA 5FTJA 2PI8A 2EEOB 1E18A 3CQZA 3X2HA 3IR7A 3PLXB 2C45A 4GA5A 3GTLA 1H0HA 2NVYA 1AA6A 3GTJA 2VPWA 1CZ4A 1E5VA 2A68D 2R92A 1YNND 4L48A 3TM7B 1WCMA 4FERA 3X2IA 2KQAA 5B6CA 3GTQA 2JA5A 3OUGA 2DMRA 2E2HA 5T5MD 4FFTA 4AZDA 2B63A 1DMSA 3IR6A 3X2OA 1PYUB 1UHEA 5FTLA 4FG2A 4JJOA 1HD5A 1EU1A 1Y1VA 3ML1A 2WB1A 2JA7A 5C1BA 3QQ7A 5T5ID 1TWHA 2NAPA 3GTPA 5H4UA 1Q16A 3TIWA 1R9TA 4JS7A 4ZM7A 1E32A 1IW7D 1TWGA 1TWFA 1FDIA 2JA6A 2E7ZA 2PJJA 4JP7A 1SMYD 3CZBA 1E61A 1Y5IA 3FKIA 1KQFA 2WAQA 2R7ZA 3HKZA 2JIRA 2E2IA 1Y4ZA 2Y0SA 3QWZA 4AAYA 4JCWA 3CF2A 3QQ8A 1QDNA 5GLXA 4AONB 4KODA 5GLYA 3GTKA 1CZ5A 1PQEA 4NOHA 1N10A 2V3VA 1G8KA 3ENGA 5GM9A 2G6GA 2PICA 4C2MA 3X2LA 1R7RA 2YU9A 2A6HD 4FG4A 4DMRA 4AVRA 2V45A 1UHDA 1Y1WA 1OA9A 1TWAA 1PPYA 3HU1A 2IV2X 2A69D 3SUJA 1I50A 1YLEA 3H0GA 2G5DA 3X2MA 1OA7A 3X2JA 2NVXA 2CW0D 5FTKA 3X2NA 3X2GA 4RV0A 4GA6A 1PT0A 4CRZA 1L8FA 1KQGA 2PMZA 1WC2A 5C18A 1PT1A 1R27A 2BH0A 3IR5A 3O5AA 2KI8A 1CR5A 1WLFA 1YNJD 2JIMA 3HU3A 2A6ED 5FTMA 1I3QA 2AE0X 2VPYA 3X2PA 4CS0A 4KDIA 2VUMA 1ZC1A 1TWCA 2JIOA 5DYGA 3GTOA 3M3GA 1E60A 3D30A 1FDOA 1PQFA 5FTNA 2GAEA 5GLFA 4KO8A 4KLNA
chains in the Genus database with same CATH topology
2JIQA 2VPXA 5EPPA 1OGYA 2PJHB 1QCSA 4KDLA 2VPZA 5DYIA 1ZYRD 1SIWA 2JIPA 3QC8A 3DMRA 2PNWA 4QIWA 2BE5D 4CRYG 1AW8B 1PYQA 4AOKB 1TMOA 1VC3B 3GTMA 1G8JA 2NYAA 4AYBA 1SFOA 1DMRA 2YUJA 1H5NA 1K83A 1S3SA 4D7ZB 2R93A 2O5JD 1PQHA 3HU2A 3GTGA 5FTJA 2PI8A 2EEOB 1E18A 3CQZA 3IR7A 3PLXB 2C45A 4GA5A 3GTLA 1H0HA 2NVYA 1AA6A 3GTJA 2VPWA 1CZ4A 1E5VA 2A68D 2R92A 1YNND 3TM7B 1WCMA 5B6CA 3GTQA 2JA5A 3OUGA 2DMRA 2E2HA 5T5MD 4AZDA 2B63A 1DMSA 3IR6A 1PYUB 1UHEA 5FTLA 1EU1A 1Y1VA 3ML1A 2WB1A 2JA7A 5C1BA 3QQ7A 5T5ID 1TWHA 2NAPA 3GTPA 1Q16A 3TIWA 1R9TA 1E32A 1IW7D 1TWGA 1TWFA 1FDIA 2JA6A 2E7ZA 2PJJA 1SMYD 3CZBA 1E61A 1Y5IA 3FKIA 1KQFA 2WAQA 2R7ZA 3HKZA 2JIRA 2E2IA 1Y4ZA 2Y0SA 3QWZA 4AAYA 3CF2A 3QQ8A 1QDNA 4AONB 4KODA 1CZ5A 3GTKA 1PQEA 4NOHA 2V3VA 1G8KA 2YU9A 2G6GA 2PICA 4C2MA 1R7RA 2A6HD 4DMRA 2V45A 1UHDA 1Y1WA 3HU1A 1TWAA 1PPYA 2IV2X 2A69D 1I50A 1YLEA 3H0GA 2G5DA 2NVXA 2CW0D 5FTKA 4RV0A 4GA6A 1PT0A 4CRZA 1KQGA 2PMZA 5C18A 1PT1A 1R27A 3O5AA 3IR5A 2KI8A 1CR5A 1WLFA 1YNJD 2JIMA 3HU3A 2A6ED 5FTMA 1I3QA 2AE0X 2VPYA 4CS0A 4KDIA 2VUMA 1ZC1A 1TWCA 2JIOA 5DYGA 3GTOA 1E60A 1FDOA 1PQFA 5FTNA 2GAEA 5GLFA 4KO8A 4KLNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JIQ A;  2VPX A;  5EPP A;  1OGY A;  2PJH B;  1QCS A;  4KDL A;  2VPZ A;  5DYI A;  1SIW A;  2JIP A;  3QC8 A;  3DMR A;  4QIW A;  4CRY G;  1AW8 B;  1PYQ A;  4AOK B;  1TMO A;  1VC3 B;  3GTM A;  1G8J A;  2NYA A;  4AYB A;  1SFO A;  1DMR A;  1H5N A;  1K83 A;  1S3S A;  4D7Z B;  2R93 A;  1PQH A;  3HU2 A;  3GTG A;  5FTJ A;  2EEO B;  1E18 A;  3CQZ A;  3IR7 A;  3PLX B;  2C45 A;  4GA5 A;  3GTL A;  1H0H A;  2NVY A;  1AA6 A;  3GTJ A;  2VPW A;  1CZ4 A;  1E5V A;  2R92 A;  3TM7 B;  1WCM A;  5B6C A;  3GTQ A;  2JA5 A;  3OUG A;  2DMR A;  2E2H A;  5T5M D;  4AZD A;  2B63 A;  1DMS A;  3IR6 A;  1PYU B;  1UHE A;  5FTL A;  1EU1 A;  1Y1V A;  3ML1 A;  2WB1 A;  2JA7 A;  5C1B A;  3QQ7 A;  5T5I D;  1TWH A;  2NAP A;  3GTP A;  1Q16 A;  3TIW A;  1R9T A;  1E32 A;  1IW7 D;  1TWG A;  1TWF A;  1FDI A;  2JA6 A;  2E7Z A;  1E61 A;  1Y5I A;  3FKI A;  1KQF A;  2WAQ A;  2R7Z A;  3HKZ A;  2JIR A;  2E2I A;  1Y4Z A;  2Y0S A;  3QWZ A;  4AAY A;  3CF2 A;  3QQ8 A;  1QDN A;  4AON B;  4KOD A;  1CZ5 A;  3GTK A;  1PQE A;  2V3V A;  1G8K A;  2YU9 A;  4C2M A;  1R7R A;  4DMR A;  2V45 A;  1UHD A;  1Y1W A;  3HU1 A;  1TWA A;  1PPY A;  2IV2 X;  1I50 A;  1YLE A;  3H0G A;  2NVX A;  5FTK A;  4RV0 A;  4GA6 A;  1PT0 A;  4CRZ A;  1KQG A;  2PMZ A;  5C18 A;  1PT1 A;  1R27 A;  3O5A A;  3IR5 A;  2KI8 A;  1CR5 A;  1WLF A;  3HU3 A;  2JIM A;  1I3Q A;  5FTM A;  2VPY A;  4CS0 A;  4KDI A;  2VUM A;  1TWC A;  2JIO A;  5DYG A;  3GTO A;  1E60 A;  1FDO A;  1PQF A;  5FTN A;  5GLF A;  4KO8 A;  4KLN A; 
#chains in the Genus database with same CATH topology
 2JIQ A;  2VPX A;  5EPP A;  3SUM A;  1OGY A;  2PJH B;  1QCS A;  4KDL A;  2ENG A;  4JP6 A;  2VPZ A;  5DYI A;  1ZYR D;  1SIW A;  2JIP A;  3QC8 A;  3DMR A;  2PNW A;  4QIW A;  1BW4 A;  2BE5 D;  4CRY G;  1AW8 B;  3SUL A;  1PYQ A;  4AOK B;  4ENG A;  1TMO A;  1VC3 B;  3GTM A;  1G8J A;  2NYA A;  4AYB A;  1SFO A;  1DMR A;  1BW3 A;  2HCZ X;  2YUJ A;  3X2K A;  1H5N A;  1K83 A;  1S3S A;  4D7Z B;  3SUK A;  2R93 A;  2O5J D;  1PQH A;  3HU2 A;  3GTG A;  5FTJ A;  2PI8 A;  2EEO B;  1E18 A;  3CQZ A;  3X2H A;  3IR7 A;  3PLX B;  2C45 A;  4GA5 A;  3GTL A;  1H0H A;  2NVY A;  1AA6 A;  3GTJ A;  2VPW A;  1CZ4 A;  1E5V A;  2A68 D;  2R92 A;  1YNN D;  4L48 A;  3TM7 B;  1WCM A;  4FER A;  3X2I A;  2KQA A;  5B6C A;  3GTQ A;  2JA5 A;  3OUG A;  2DMR A;  2E2H A;  5T5M D;  4FFT A;  4AZD A;  2B63 A;  1DMS A;  3IR6 A;  3X2O A;  1PYU B;  1UHE A;  5FTL A;  4FG2 A;  4JJO A;  1HD5 A;  1EU1 A;  1Y1V A;  3ML1 A;  2WB1 A;  2JA7 A;  5C1B A;  3QQ7 A;  5T5I D;  1TWH A;  2NAP A;  3GTP A;  5H4U A;  1Q16 A;  3TIW A;  1R9T A;  4JS7 A;  4ZM7 A;  1E32 A;  1IW7 D;  1TWG A;  1TWF A;  1FDI A;  2JA6 A;  2E7Z A;  2PJJ A;  4JP7 A;  1SMY D;  3CZB A;  1E61 A;  1Y5I A;  3FKI A;  1KQF A;  2WAQ A;  2R7Z A;  3HKZ A;  2JIR A;  2E2I A;  1Y4Z A;  2Y0S A;  3QWZ A;  4AAY A;  4JCW A;  3CF2 A;  3QQ8 A;  1QDN A;  5GLX A;  4AON B;  4KOD A;  5GLY A;  3GTK A;  1CZ5 A;  1PQE A;  4NOH A;  1N10 A;  2V3V A;  1G8K A;  3ENG A;  5GM9 A;  2G6G A;  2PIC A;  4C2M A;  3X2L A;  1R7R A;  2YU9 A;  2A6H D;  4FG4 A;  4DMR A;  4AVR A;  2V45 A;  1UHD A;  1Y1W A;  1OA9 A;  1TWA A;  1PPY A;  3HU1 A;  2IV2 X;  2A69 D;  3SUJ A;  1I50 A;  1YLE A;  3H0G A;  2G5D A;  3X2M A;  1OA7 A;  3X2J A;  2NVX A;  2CW0 D;  5FTK A;  3X2N A;  3X2G A;  4RV0 A;  4GA6 A;  1PT0 A;  4CRZ A;  1L8F A;  1KQG A;  2PMZ A;  1WC2 A;  5C18 A;  1PT1 A;  1R27 A;  2BH0 A;  3IR5 A;  3O5A A;  2KI8 A;  1CR5 A;  1WLF A;  1YNJ D;  2JIM A;  3HU3 A;  2A6E D;  5FTM A;  1I3Q A;  2AE0 X;  2VPY A;  3X2P A;  4CS0 A;  4KDI A;  2VUM A;  1ZC1 A;  1TWC A;  2JIO A;  5DYG A;  3GTO A;  3M3G A;  1E60 A;  3D30 A;  1FDO A;  1PQF A;  5FTN A;  2GAE A;  5GLF A;  4KO8 A;  4KLN A; 
#chains in the Genus database with same CATH homology
 2JIQ A;  2VPX A;  5EPP A;  1OGY A;  2PJH B;  1QCS A;  4KDL A;  2VPZ A;  5DYI A;  1ZYR D;  1SIW A;  2JIP A;  3QC8 A;  3DMR A;  2PNW A;  4QIW A;  2BE5 D;  4CRY G;  1AW8 B;  1PYQ A;  4AOK B;  1TMO A;  1VC3 B;  3GTM A;  1G8J A;  2NYA A;  4AYB A;  1SFO A;  1DMR A;  2YUJ A;  1H5N A;  1K83 A;  1S3S A;  4D7Z B;  2R93 A;  2O5J D;  1PQH A;  3HU2 A;  3GTG A;  5FTJ A;  2PI8 A;  2EEO B;  1E18 A;  3CQZ A;  3IR7 A;  3PLX B;  2C45 A;  4GA5 A;  3GTL A;  1H0H A;  2NVY A;  1AA6 A;  3GTJ A;  2VPW A;  1CZ4 A;  1E5V A;  2A68 D;  2R92 A;  1YNN D;  3TM7 B;  1WCM A;  5B6C A;  3GTQ A;  2JA5 A;  3OUG A;  2DMR A;  2E2H A;  5T5M D;  4AZD A;  2B63 A;  1DMS A;  3IR6 A;  1PYU B;  1UHE A;  5FTL A;  1EU1 A;  1Y1V A;  3ML1 A;  2WB1 A;  2JA7 A;  5C1B A;  3QQ7 A;  5T5I D;  1TWH A;  2NAP A;  3GTP A;  1Q16 A;  3TIW A;  1R9T A;  1E32 A;  1IW7 D;  1TWG A;  1TWF A;  1FDI A;  2JA6 A;  2E7Z A;  2PJJ A;  1SMY D;  3CZB A;  1E61 A;  1Y5I A;  3FKI A;  1KQF A;  2WAQ A;  2R7Z A;  3HKZ A;  2JIR A;  2E2I A;  1Y4Z A;  2Y0S A;  3QWZ A;  4AAY A;  3CF2 A;  3QQ8 A;  1QDN A;  4AON B;  4KOD A;  1CZ5 A;  3GTK A;  1PQE A;  4NOH A;  2V3V A;  1G8K A;  2YU9 A;  2G6G A;  2PIC A;  4C2M A;  1R7R A;  2A6H D;  4DMR A;  2V45 A;  1UHD A;  1Y1W A;  3HU1 A;  1TWA A;  1PPY A;  2IV2 X;  2A69 D;  1I50 A;  1YLE A;  3H0G A;  2G5D A;  2NVX A;  2CW0 D;  5FTK A;  4RV0 A;  4GA6 A;  1PT0 A;  4CRZ A;  1KQG A;  2PMZ A;  5C18 A;  1PT1 A;  1R27 A;  3O5A A;  3IR5 A;  2KI8 A;  1CR5 A;  1WLF A;  1YNJ D;  2JIM A;  3HU3 A;  2A6E D;  5FTM A;  1I3Q A;  2AE0 X;  2VPY A;  4CS0 A;  4KDI A;  2VUM A;  1ZC1 A;  1TWC A;  2JIO A;  5DYG A;  3GTO A;  1E60 A;  1FDO A;  1PQF A;  5FTN A;  2GAE A;  5GLF A;  4KO8 A;  4KLN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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