1PQEA

S25a mutant of pyruvoyl dependent aspartate decarboxylase
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
117
structure length
117
Chain Sequence
MIRTMLQGKLHRVKVTHADLHYEGACAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
source organism Escherichia coli
molecule tags Lyase
molecule keywords Aspartate 1-decarboxylase
total genus 35
structure length 117
sequence length 117
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-06-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1pqeA00
1S3SA 5DYIA 2V3VA 1DMSA 3GTGA 3IR6A 1TWAA 1R9TA 3GTQA 1DMRA 3IR7A 2VPZA 2PJHB 2JA7A 2DMRA 1UHDA 5FTKA 4AYBA 4CS0A 1K83A 1E18A 1E61A 2V45A 2JIMA 5C1BA 1PQFA 1TWFA 3FKIA 4KODA 4KDIA 4CRZA 1AA6A 3GTJA 1QCSA 1PQEA 4GA6A 3DMRA 4AOKB 4AONB 2R92A 1EU1A 5DYGA 5FTLA 1AW8B 4CRYG 1Y1WA 2NAPA 2VPXA 1IW7D 2C45A 3O5AA 2Y0SA 1QDNA 1SFOA 5T5ID 1CZ5A 1E60A 1Y4ZA 2JIQA 3GTMA 2NVYA 4GA5A 2R7ZA 2IV2X 1KQFA 1Y5IA 3OUGA 3HU3A 2YU9A 1PYUB 1H5NA 2R93A 1R27A 5EPPA 3CQZA 2NYAA 5FTMA 4RV0A 3HKZA 1E5VA 3QQ8A 2JA5A 1PT0A 1OGYA 3GTLA 3QQ7A 3IR5A 2E2IA 2B63A 2VPYA 1PPYA 3GTPA 1YLEA 3CF2A 3HU1A 1VC3B 2NVXA 3TM7B 1WLFA 2JIPA 1PQHA 3PLXB 2VPWA 4QIWA 1WCMA 5B6CA 2KI8A 5FTNA 1CR5A 4KLNA 4KO8A 5FTJA 3GTOA 1TWGA 2E7ZA 2VUMA 1I50A 4D7ZB 1H0HA 1KQGA 3TIWA 1Q16A 2EEOB 3QWZA 1G8KA 1UHEA 1SIWA 4C2MA 4AZDA 1PT1A 1TWCA 1TMOA 1E32A 3QC8A 3H0GA 4DMRA 1R7RA 2E2HA 2JIRA 2JIOA 1Y1VA 5T5MD 1FDIA 1FDOA 1I3QA 2PMZA 3ML1A 2WAQA 1CZ4A 4AAYA 4KDLA 3HU2A 3GTKA 2JA6A 1TWHA 2WB1A 1PYQA 1G8JA 5GLFA 5C18A
chains in the Genus database with same CATH superfamily
4FG2A 5GM9A 3X2OA 1S3SA 3D30A 5DYIA 3X2LA 2V3VA 4JP6A 2A6ED 4JJOA 1DMSA 3GTGA 4JP7A 3IR6A 1TWAA 3SUMA 1R9TA 3GTQA 1DMRA 3IR7A 2VPZA 3X2KA 1OA9A 2PJHB 2JA7A 2DMRA 1UHDA 5FTKA 4AYBA 4CS0A 1BW4A 1K83A 1E18A 1SMYD 5H4UA 3X2NA 1E61A 2V45A 2JIMA 2A68D 3M3GA 5C1BA 1BW3A 1PQFA 1TWFA 3FKIA 4KODA 4KDIA 4CRZA 1AA6A 3GTJA 1QCSA 1PQEA 3CZBA 4GA6A 3DMRA 4AOKB 4AONB 2R92A 1ZC1A 1EU1A 5DYGA 3X2MA 2BE5D 5FTLA 1AW8B 4CRYG 3X2JA 1Y1WA 2NAPA 2VPXA 1IW7D 2C45A 3O5AA 2YUJA 2Y0SA 1QDNA 1SFOA 4JCWA 5T5ID 1CZ5A 4FFTA 1E60A 1WC2A 1Y4ZA 2JIQA 2NVYA 4GA5A 3X2HA 3GTMA 2R7ZA 2IV2X 2HCZX 1KQFA 1Y5IA 3OUGA 3HU3A 2YU9A 2BH0A 1PYUB 1H5NA 2R93A 1R27A 4FERA 4NOHA 5EPPA 3CQZA 4ENGA 2NYAA 5FTMA 4RV0A 3SUKA 2PICA 3HKZA 1E5VA 3QQ8A 2JA5A 1PT0A 1HD5A 2AE0X 1OGYA 3GTLA 1L8FA 3QQ7A 1N10A 3IR5A 4AVRA 2KQAA 2E2IA 2B63A 2VPYA 3X2IA 2G6GA 1PPYA 3GTPA 1YLEA 2PI8A 2A6HD 3CF2A 3HU1A 1VC3B 2NVXA 3X2PA 3ENGA 3TM7B 1WLFA 2JIPA 1PQHA 2G5DA 2CW0D 3PLXB 2VPWA 4QIWA 1WCMA 5GLYA 5B6CA 2O5JD 2KI8A 5FTNA 1CR5A 4KLNA 4KO8A 2ENGA 2GAEA 5FTJA 3GTOA 1TWGA 4FG4A 2E7ZA 2A69D 2VUMA 1I50A 4JS7A 1H0HA 4D7ZB 1KQGA 3TIWA 1Q16A 2EEOB 3QWZA 5GLXA 1OA7A 2PJJA 1G8KA 1UHEA 1SIWA 4L48A 3SUJA 4AZDA 4C2MA 1PT1A 1TWCA 1TMOA 4ZM7A 1E32A 1ZYRD 3QC8A 3H0GA 1YNND 4DMRA 3SULA 1R7RA 2E2HA 2JIRA 2JIOA 1Y1VA 5T5MD 1FDIA 1FDOA 1I3QA 2PMZA 3ML1A 2WAQA 1CZ4A 4AAYA 1YNJD 2PNWA 4KDLA 3HU2A 3GTKA 2JA6A 1TWHA 2WB1A 3X2GA 1PYQA 1G8JA 5GLFA 5C18A
chains in the Genus database with same CATH topology
1S3SA 5DYIA 2V3VA 2A6ED 1DMSA 3GTGA 3IR6A 1TWAA 1R9TA 3GTQA 1DMRA 3IR7A 2VPZA 2PJHB 2JA7A 2DMRA 1UHDA 5FTKA 4AYBA 4CS0A 1K83A 1E18A 1SMYD 1E61A 2V45A 2JIMA 2A68D 5C1BA 1PQFA 1TWFA 3FKIA 4KODA 4KDIA 4CRZA 1AA6A 3GTJA 1QCSA 1PQEA 3CZBA 4GA6A 3DMRA 4AOKB 4AONB 2R92A 1ZC1A 1EU1A 5DYGA 2BE5D 5FTLA 1AW8B 4CRYG 1Y1WA 2NAPA 2VPXA 1IW7D 2C45A 3O5AA 2YUJA 2Y0SA 1QDNA 1SFOA 5T5ID 1CZ5A 1E60A 1Y4ZA 2JIQA 3GTMA 2NVYA 4GA5A 2R7ZA 2IV2X 1KQFA 1Y5IA 3OUGA 3HU3A 2YU9A 1PYUB 1H5NA 2R93A 1R27A 4NOHA 5EPPA 3CQZA 2NYAA 5FTMA 4RV0A 2PICA 3HKZA 1E5VA 3QQ8A 2JA5A 1PT0A 2AE0X 1OGYA 3GTLA 3QQ7A 3IR5A 2E2IA 2B63A 2VPYA 2G6GA 1PPYA 3GTPA 1YLEA 2PI8A 2A6HD 3CF2A 3HU1A 1VC3B 2NVXA 3TM7B 1WLFA 2JIPA 1PQHA 2G5DA 2CW0D 3PLXB 2VPWA 4QIWA 1WCMA 5B6CA 2O5JD 2KI8A 5FTNA 1CR5A 4KLNA 4KO8A 2GAEA 5FTJA 3GTOA 1TWGA 2E7ZA 2A69D 2VUMA 1I50A 4D7ZB 1H0HA 1KQGA 3TIWA 1Q16A 2EEOB 3QWZA 2PJJA 1G8KA 1UHEA 1SIWA 4C2MA 4AZDA 1PT1A 1TWCA 1TMOA 1E32A 1ZYRD 3QC8A 3H0GA 1YNND 4DMRA 1R7RA 2E2HA 2JIRA 2JIOA 1Y1VA 5T5MD 1FDIA 1FDOA 1I3QA 2PMZA 3ML1A 2WAQA 1CZ4A 4AAYA 1YNJD 2PNWA 4KDLA 3HU2A 3GTKA 2JA6A 1TWHA 2WB1A 1PYQA 1G8JA 5GLFA 5C18A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1S3S A;  5DYI A;  2V3V A;  1DMS A;  3GTG A;  3IR6 A;  1TWA A;  1R9T A;  3GTQ A;  1DMR A;  3IR7 A;  2VPZ A;  2PJH B;  2JA7 A;  2DMR A;  1UHD A;  5FTK A;  4AYB A;  4CS0 A;  1K83 A;  1E18 A;  1E61 A;  2V45 A;  2JIM A;  5C1B A;  1PQF A;  1TWF A;  3FKI A;  4KOD A;  4KDI A;  4CRZ A;  1AA6 A;  3GTJ A;  1QCS A;  1PQE A;  4GA6 A;  3DMR A;  4AOK B;  4AON B;  2R92 A;  1EU1 A;  5DYG A;  5FTL A;  1AW8 B;  4CRY G;  1Y1W A;  2NAP A;  2VPX A;  1IW7 D;  2C45 A;  3O5A A;  2Y0S A;  1QDN A;  1SFO A;  5T5I D;  1CZ5 A;  1E60 A;  1Y4Z A;  2JIQ A;  3GTM A;  2NVY A;  4GA5 A;  2R7Z A;  2IV2 X;  1KQF A;  1Y5I A;  3OUG A;  3HU3 A;  2YU9 A;  1PYU B;  1H5N A;  2R93 A;  1R27 A;  5EPP A;  3CQZ A;  2NYA A;  5FTM A;  4RV0 A;  3HKZ A;  1E5V A;  3QQ8 A;  2JA5 A;  1PT0 A;  1OGY A;  3GTL A;  3QQ7 A;  3IR5 A;  2E2I A;  2B63 A;  2VPY A;  1PPY A;  3GTP A;  1YLE A;  3CF2 A;  3HU1 A;  1VC3 B;  2NVX A;  3TM7 B;  1WLF A;  2JIP A;  1PQH A;  3PLX B;  2VPW A;  4QIW A;  1WCM A;  5B6C A;  2KI8 A;  5FTN A;  1CR5 A;  4KLN A;  4KO8 A;  5FTJ A;  3GTO A;  1TWG A;  2E7Z A;  2VUM A;  1I50 A;  4D7Z B;  1H0H A;  1KQG A;  3TIW A;  1Q16 A;  2EEO B;  3QWZ A;  1G8K A;  1UHE A;  1SIW A;  4C2M A;  4AZD A;  1PT1 A;  1TWC A;  1TMO A;  1E32 A;  3QC8 A;  3H0G A;  4DMR A;  1R7R A;  2E2H A;  2JIR A;  2JIO A;  1Y1V A;  5T5M D;  1FDI A;  1FDO A;  1I3Q A;  2PMZ A;  3ML1 A;  2WAQ A;  1CZ4 A;  4AAY A;  4KDL A;  3HU2 A;  3GTK A;  2JA6 A;  1TWH A;  2WB1 A;  1PYQ A;  1G8J A;  5GLF A;  5C18 A; 
#chains in the Genus database with same CATH topology
 4FG2 A;  5GM9 A;  3X2O A;  1S3S A;  3D30 A;  5DYI A;  3X2L A;  2V3V A;  4JP6 A;  2A6E D;  4JJO A;  1DMS A;  3GTG A;  4JP7 A;  3IR6 A;  1TWA A;  3SUM A;  1R9T A;  3GTQ A;  1DMR A;  3IR7 A;  2VPZ A;  3X2K A;  1OA9 A;  2PJH B;  2JA7 A;  2DMR A;  1UHD A;  5FTK A;  4AYB A;  4CS0 A;  1BW4 A;  1K83 A;  1E18 A;  1SMY D;  5H4U A;  3X2N A;  1E61 A;  2V45 A;  2JIM A;  2A68 D;  3M3G A;  5C1B A;  1BW3 A;  1PQF A;  1TWF A;  3FKI A;  4KOD A;  4KDI A;  4CRZ A;  1AA6 A;  3GTJ A;  1QCS A;  1PQE A;  3CZB A;  4GA6 A;  3DMR A;  4AOK B;  4AON B;  2R92 A;  1ZC1 A;  1EU1 A;  5DYG A;  3X2M A;  2BE5 D;  5FTL A;  1AW8 B;  4CRY G;  3X2J A;  1Y1W A;  2NAP A;  2VPX A;  1IW7 D;  2C45 A;  3O5A A;  2YUJ A;  2Y0S A;  1QDN A;  1SFO A;  4JCW A;  5T5I D;  1CZ5 A;  4FFT A;  1E60 A;  1WC2 A;  1Y4Z A;  2JIQ A;  2NVY A;  4GA5 A;  3X2H A;  3GTM A;  2R7Z A;  2IV2 X;  2HCZ X;  1KQF A;  1Y5I A;  3OUG A;  3HU3 A;  2YU9 A;  2BH0 A;  1PYU B;  1H5N A;  2R93 A;  1R27 A;  4FER A;  4NOH A;  5EPP A;  3CQZ A;  4ENG A;  2NYA A;  5FTM A;  4RV0 A;  3SUK A;  2PIC A;  3HKZ A;  1E5V A;  3QQ8 A;  2JA5 A;  1PT0 A;  1HD5 A;  2AE0 X;  1OGY A;  3GTL A;  1L8F A;  3QQ7 A;  1N10 A;  3IR5 A;  4AVR A;  2KQA A;  2E2I A;  2B63 A;  2VPY A;  3X2I A;  2G6G A;  1PPY A;  3GTP A;  1YLE A;  2PI8 A;  2A6H D;  3CF2 A;  3HU1 A;  1VC3 B;  2NVX A;  3X2P A;  3ENG A;  3TM7 B;  1WLF A;  2JIP A;  1PQH A;  2G5D A;  2CW0 D;  3PLX B;  2VPW A;  4QIW A;  1WCM A;  5GLY A;  5B6C A;  2O5J D;  2KI8 A;  5FTN A;  1CR5 A;  4KLN A;  4KO8 A;  2ENG A;  2GAE A;  5FTJ A;  3GTO A;  1TWG A;  4FG4 A;  2E7Z A;  2A69 D;  2VUM A;  1I50 A;  4JS7 A;  1H0H A;  4D7Z B;  1KQG A;  3TIW A;  1Q16 A;  2EEO B;  3QWZ A;  5GLX A;  1OA7 A;  2PJJ A;  1G8K A;  1UHE A;  1SIW A;  4L48 A;  3SUJ A;  4AZD A;  4C2M A;  1PT1 A;  1TWC A;  1TMO A;  4ZM7 A;  1E32 A;  1ZYR D;  3QC8 A;  3H0G A;  1YNN D;  4DMR A;  3SUL A;  1R7R A;  2E2H A;  2JIR A;  2JIO A;  1Y1V A;  5T5M D;  1FDI A;  1FDO A;  1I3Q A;  2PMZ A;  3ML1 A;  2WAQ A;  1CZ4 A;  4AAY A;  1YNJ D;  2PNW A;  4KDL A;  3HU2 A;  3GTK A;  2JA6 A;  1TWH A;  2WB1 A;  3X2G A;  1PYQ A;  1G8J A;  5GLF A;  5C18 A; 
#chains in the Genus database with same CATH homology
 1S3S A;  5DYI A;  2V3V A;  2A6E D;  1DMS A;  3GTG A;  3IR6 A;  1TWA A;  1R9T A;  3GTQ A;  1DMR A;  3IR7 A;  2VPZ A;  2PJH B;  2JA7 A;  2DMR A;  1UHD A;  5FTK A;  4AYB A;  4CS0 A;  1K83 A;  1E18 A;  1SMY D;  1E61 A;  2V45 A;  2JIM A;  2A68 D;  5C1B A;  1PQF A;  1TWF A;  3FKI A;  4KOD A;  4KDI A;  4CRZ A;  1AA6 A;  3GTJ A;  1QCS A;  1PQE A;  3CZB A;  4GA6 A;  3DMR A;  4AOK B;  4AON B;  2R92 A;  1ZC1 A;  1EU1 A;  5DYG A;  2BE5 D;  5FTL A;  1AW8 B;  4CRY G;  1Y1W A;  2NAP A;  2VPX A;  1IW7 D;  2C45 A;  3O5A A;  2YUJ A;  2Y0S A;  1QDN A;  1SFO A;  5T5I D;  1CZ5 A;  1E60 A;  1Y4Z A;  2JIQ A;  3GTM A;  2NVY A;  4GA5 A;  2R7Z A;  2IV2 X;  1KQF A;  1Y5I A;  3OUG A;  3HU3 A;  2YU9 A;  1PYU B;  1H5N A;  2R93 A;  1R27 A;  4NOH A;  5EPP A;  3CQZ A;  2NYA A;  5FTM A;  4RV0 A;  2PIC A;  3HKZ A;  1E5V A;  3QQ8 A;  2JA5 A;  1PT0 A;  2AE0 X;  1OGY A;  3GTL A;  3QQ7 A;  3IR5 A;  2E2I A;  2B63 A;  2VPY A;  2G6G A;  1PPY A;  3GTP A;  1YLE A;  2PI8 A;  2A6H D;  3CF2 A;  3HU1 A;  1VC3 B;  2NVX A;  3TM7 B;  1WLF A;  2JIP A;  1PQH A;  2G5D A;  2CW0 D;  3PLX B;  2VPW A;  4QIW A;  1WCM A;  5B6C A;  2O5J D;  2KI8 A;  5FTN A;  1CR5 A;  4KLN A;  4KO8 A;  2GAE A;  5FTJ A;  3GTO A;  1TWG A;  2E7Z A;  2A69 D;  2VUM A;  1I50 A;  4D7Z B;  1H0H A;  1KQG A;  3TIW A;  1Q16 A;  2EEO B;  3QWZ A;  2PJJ A;  1G8K A;  1UHE A;  1SIW A;  4C2M A;  4AZD A;  1PT1 A;  1TWC A;  1TMO A;  1E32 A;  1ZYR D;  3QC8 A;  3H0G A;  1YNN D;  4DMR A;  1R7R A;  2E2H A;  2JIR A;  2JIO A;  1Y1V A;  5T5M D;  1FDI A;  1FDO A;  1I3Q A;  2PMZ A;  3ML1 A;  2WAQ A;  1CZ4 A;  4AAY A;  1YNJ D;  2PNW A;  4KDL A;  3HU2 A;  3GTK A;  2JA6 A;  1TWH A;  2WB1 A;  1PYQ A;  1G8J A;  5GLF A;  5C18 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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