4AVRA

Crystal structure of the hypothetical protein pa4485 from pseudomonas aeruginosa
Total Genus 34
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
94
structure length
94
Chain Sequence
MDTGEASYYGSRHAGLRTASGERYNPNAMTAAHRTLPFGARVRVTNLDNRRSVVVRINDRGPFRRGRIIDVSRKAAEGLGMIRSGVAPVRIESL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Unknown function
source organism Pseudomonas aeruginosa pa01
publication title The Aeropath Project Targeting Pseudomonas Aeruginosa: Crystallographic Studies for Assessment of Potential Targets in Early-Stage Drug Discovery.
pubmed doi rcsb
molecule keywords PA4485
total genus 34
structure length 94
sequence length 94
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-05-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 4avrA00
1HD5A 3X2LA 1OA7A 3SUJA 2PICA 1N10A 2PI8A 4AVRA 5GM9A 2AE0X 1WC2A 4FG4A 3X2JA 2G5DA 1BW4A 1L8FA 5GLXA 2PJJA 2PNWA 3SUKA 3X2OA 1BW3A 4JP7A 4JS7A 3X2HA 3CZBA 4L48A 1OA9A 2G6GA 4JP6A 4ZM7A 2HCZX 3X2IA 3X2NA 3X2PA 4FFTA 4FG2A 4ENGA 2ENGA 3X2GA 3ENGA 4JJOA 3SUMA 3M3GA 5GLYA 4JCWA 3SULA 2BH0A 3D30A 5H4UA 3X2MA 4FERA 3X2KA 2KQAA 2GAEA
chains in the Genus database with same CATH superfamily
2PMZA 5T5MD 5FTLA 1TWFA 4CRZA 2JIQA 2WAQA 3GTQA 4AONB 1DMSA 2A6ED 3X2JA 2G5DA 1G8JA 3QC8A 5DYIA 2E2HA 2E2IA 1SFOA 5EPPA 4CRYG 2CW0D 1KQGA 1YNJD 1PYQA 2C45A 2PJJA 3GTPA 1TWGA 4KODA 1OA9A 2YUJA 1OGYA 4NOHA 2HCZX 3X2PA 2PJHB 4ENGA 3CF2A 1YLEA 1QCSA 3X2GA 3SUMA 3ML1A 2VUMA 2Y0SA 3GTLA 1CZ4A 3CQZA 3QQ8A 5H4UA 1Y5IA 4DMRA 1PT1A 1TWHA 5C1BA 3X2HA 3OUGA 4QIWA 1AW8B 3GTGA 2R92A 3QQ7A 1UHEA 3H0GA 2JIPA 2PI8A 1E60A 4C2MA 4GA6A 1K83A 3GTMA 1BW4A 1L8FA 1TWCA 2NAPA 5GLXA 3QWZA 2V45A 3PLXB 3X2OA 1BW3A 1SMYD 1Y1VA 2A6HD 2WB1A 4KO8A 4L48A 1Y1WA 3GTKA 3FKIA 3GTOA 2JA6A 4KLNA 3X2IA 3X2NA 1ZYRD 4FG2A 5B6CA 2A69D 1E61A 5FTJA 4KDLA 1E32A 4JCWA 4AZDA 2VPZA 4AOKB 3D30A 3X2MA 4FERA 1FDIA 2KQAA 2GAEA 1G8KA 1E5VA 2NYAA 3GTJA 4KDIA 1OA7A 1I50A 2PICA 3TM7B 2E7ZA 1PQHA 4AVRA 1EU1A 1WCMA 3IR6A 3HU1A 2KI8A 2B63A 2YU9A 1R7RA 5T5ID 4GA5A 1PPYA 1TMOA 1YNND 2EEOB 1QDNA 2PNWA 3SUKA 2VPYA 5FTKA 4JP7A 4JS7A 1Q16A 3CZBA 2JIMA 3HU2A 1R9TA 2G6GA 2BE5D 1ZC1A 4ZM7A 1KQFA 3IR7A 1E18A 5DYGA 4AAYA 1CZ5A 5C18A 1PQFA 1Y4ZA 2ENGA 5GLFA 1DMRA 3ENGA 2IV2X 1VC3B 3M3GA 1PQEA 3HU3A 2DMRA 1SIWA 3HKZA 3TIWA 1I3QA 2NVXA 2JA7A 2O5JD 1S3SA 1PYUB 2JIOA 5FTNA 1AA6A 1HD5A 3X2LA 3O5AA 3SUJA 4RV0A 2R93A 1N10A 1H5NA 1CR5A 2VPXA 5GM9A 1PT0A 1WC2A 2AE0X 4FG4A 1FDOA 1IW7D 4AYBA 5FTMA 2VPWA 2V3VA 2NVYA 4D7ZB 1TWAA 4JP6A 2A68D 4CS0A 2R7ZA 4FFTA 1H0HA 1R27A 3IR5A 2JIRA 4JJOA 2JA5A 5GLYA 1UHDA 3SULA 2BH0A 3X2KA 1WLFA 3DMRA
chains in the Genus database with same CATH topology
1HD5A 3X2LA 1OA7A 3SUJA 2PICA 1N10A 2PI8A 4AVRA 5GM9A 2AE0X 1WC2A 4FG4A 3X2JA 2G5DA 1BW4A 1L8FA 5GLXA 2PJJA 2PNWA 3SUKA 3X2OA 1BW3A 4JP7A 4JS7A 3X2HA 3CZBA 4L48A 1OA9A 2G6GA 4JP6A 4ZM7A 2HCZX 3X2IA 3X2NA 3X2PA 4FFTA 4FG2A 4ENGA 2ENGA 3X2GA 3ENGA 4JJOA 3SUMA 3M3GA 5GLYA 4JCWA 3SULA 2BH0A 3D30A 5H4UA 3X2MA 4FERA 3X2KA 2KQAA 2GAEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HD5 A;  3X2L A;  1OA7 A;  3SUJ A;  2PIC A;  1N10 A;  2PI8 A;  4AVR A;  5GM9 A;  2AE0 X;  1WC2 A;  4FG4 A;  3X2J A;  2G5D A;  1BW4 A;  1L8F A;  5GLX A;  2PJJ A;  2PNW A;  3SUK A;  3X2O A;  1BW3 A;  4JP7 A;  4JS7 A;  3X2H A;  3CZB A;  4L48 A;  1OA9 A;  2G6G A;  4JP6 A;  4ZM7 A;  2HCZ X;  3X2I A;  3X2N A;  3X2P A;  4FFT A;  4FG2 A;  4ENG A;  2ENG A;  3X2G A;  3ENG A;  4JJO A;  3SUM A;  3M3G A;  5GLY A;  4JCW A;  3SUL A;  2BH0 A;  3D30 A;  5H4U A;  3X2M A;  4FER A;  3X2K A;  2KQA A;  2GAE A; 
#chains in the Genus database with same CATH topology
 2PMZ A;  5T5M D;  5FTL A;  1TWF A;  4CRZ A;  2JIQ A;  2WAQ A;  3GTQ A;  4AON B;  1DMS A;  2A6E D;  3X2J A;  2G5D A;  1G8J A;  3QC8 A;  5DYI A;  2E2H A;  2E2I A;  1SFO A;  5EPP A;  4CRY G;  2CW0 D;  1KQG A;  1YNJ D;  1PYQ A;  2C45 A;  2PJJ A;  3GTP A;  1TWG A;  4KOD A;  1OA9 A;  2YUJ A;  1OGY A;  4NOH A;  2HCZ X;  3X2P A;  2PJH B;  4ENG A;  3CF2 A;  1YLE A;  1QCS A;  3X2G A;  3SUM A;  3ML1 A;  2VUM A;  2Y0S A;  3GTL A;  1CZ4 A;  3CQZ A;  3QQ8 A;  5H4U A;  1Y5I A;  4DMR A;  1PT1 A;  1TWH A;  5C1B A;  3X2H A;  3OUG A;  4QIW A;  1AW8 B;  3GTG A;  2R92 A;  3QQ7 A;  1UHE A;  3H0G A;  2JIP A;  2PI8 A;  1E60 A;  4C2M A;  4GA6 A;  1K83 A;  3GTM A;  1BW4 A;  1L8F A;  1TWC A;  2NAP A;  5GLX A;  3QWZ A;  2V45 A;  3PLX B;  3X2O A;  1BW3 A;  1SMY D;  1Y1V A;  2A6H D;  2WB1 A;  4KO8 A;  4L48 A;  1Y1W A;  3GTK A;  3FKI A;  3GTO A;  2JA6 A;  4KLN A;  3X2I A;  3X2N A;  1ZYR D;  4FG2 A;  5B6C A;  2A69 D;  1E61 A;  5FTJ A;  4KDL A;  1E32 A;  4JCW A;  4AZD A;  2VPZ A;  4AOK B;  3D30 A;  3X2M A;  4FER A;  1FDI A;  2KQA A;  2GAE A;  1G8K A;  1E5V A;  2NYA A;  3GTJ A;  4KDI A;  1OA7 A;  1I50 A;  2PIC A;  3TM7 B;  2E7Z A;  1PQH A;  4AVR A;  1EU1 A;  1WCM A;  3IR6 A;  3HU1 A;  2KI8 A;  2B63 A;  2YU9 A;  1R7R A;  5T5I D;  4GA5 A;  1PPY A;  1TMO A;  1YNN D;  2EEO B;  1QDN A;  2PNW A;  3SUK A;  2VPY A;  5FTK A;  4JP7 A;  4JS7 A;  1Q16 A;  3CZB A;  2JIM A;  3HU2 A;  1R9T A;  2G6G A;  2BE5 D;  1ZC1 A;  4ZM7 A;  1KQF A;  3IR7 A;  1E18 A;  5DYG A;  4AAY A;  1CZ5 A;  5C18 A;  1PQF A;  1Y4Z A;  2ENG A;  5GLF A;  1DMR A;  3ENG A;  2IV2 X;  1VC3 B;  3M3G A;  1PQE A;  3HU3 A;  2DMR A;  1SIW A;  3HKZ A;  3TIW A;  1I3Q A;  2NVX A;  2JA7 A;  2O5J D;  1S3S A;  1PYU B;  2JIO A;  5FTN A;  1AA6 A;  1HD5 A;  3X2L A;  3O5A A;  3SUJ A;  4RV0 A;  2R93 A;  1N10 A;  1H5N A;  1CR5 A;  2VPX A;  5GM9 A;  1PT0 A;  1WC2 A;  2AE0 X;  4FG4 A;  1FDO A;  1IW7 D;  4AYB A;  5FTM A;  2VPW A;  2V3V A;  2NVY A;  4D7Z B;  1TWA A;  4JP6 A;  2A68 D;  4CS0 A;  2R7Z A;  4FFT A;  1H0H A;  1R27 A;  3IR5 A;  2JIR A;  4JJO A;  2JA5 A;  5GLY A;  1UHD A;  3SUL A;  2BH0 A;  3X2K A;  1WLF A;  3DMR A; 
#chains in the Genus database with same CATH homology
 1HD5 A;  3X2L A;  1OA7 A;  3SUJ A;  2PIC A;  1N10 A;  2PI8 A;  4AVR A;  5GM9 A;  2AE0 X;  1WC2 A;  4FG4 A;  3X2J A;  2G5D A;  1BW4 A;  1L8F A;  5GLX A;  2PJJ A;  2PNW A;  3SUK A;  3X2O A;  1BW3 A;  4JP7 A;  4JS7 A;  3X2H A;  3CZB A;  4L48 A;  1OA9 A;  2G6G A;  4JP6 A;  4ZM7 A;  2HCZ X;  3X2I A;  3X2N A;  3X2P A;  4FFT A;  4FG2 A;  4ENG A;  2ENG A;  3X2G A;  3ENG A;  4JJO A;  3SUM A;  3M3G A;  5GLY A;  4JCW A;  3SUL A;  2BH0 A;  3D30 A;  5H4U A;  3X2M A;  4FER A;  3X2K A;  2KQA A;  2GAE A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...