4AVRA

Crystal structure of the hypothetical protein pa4485 from pseudomonas aeruginosa
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
94
structure length
94
Chain Sequence
MDTGEASYYGSRHAGLRTASGERYNPNAMTAAHRTLPFGARVRVTNLDNRRSVVVRINDRGPFRRGRIIDVSRKAAEGLGMIRSGVAPVRIESL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords PA4485
publication title The Aeropath Project Targeting Pseudomonas Aeruginosa: Crystallographic Studies for Assessment of Potential Targets in Early-Stage Drug Discovery.
pubmed doi rcsb
source organism Pseudomonas aeruginosa pa01
total genus 34
structure length 94
sequence length 94
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-05-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 4avrA00
3M3GA 4JCWA 3SUKA 4FFTA 4AVRA 3SUJA 1L8FA 5GM9A 3SUMA 5H4UA 3SULA 2KQAA 3X2NA 3X2GA 1WC2A 4FG2A 4JP6A 1HD5A 2HCZX 4FERA 1BW4A 3X2OA 3X2PA 2BH0A 3X2KA 2GAEA 3X2LA 4ENGA 5GLXA 3D30A 3X2MA 1BW3A 2PJJA 3X2HA 2G6GA 4L48A 2PI8A 2AE0X 2PNWA 4JJOA 3ENGA 1OA7A 2PICA 4ZM7A 3X2JA 4JS7A 2G5DA 1N10A 2ENGA 3CZBA 4JP7A 1OA9A 3X2IA 5GLYA 4FG4A
chains in the Genus database with same CATH superfamily
4QIWA 2VPXA 3CF2A 4JCWA 4FFTA 2WB1A 1L8FA 1SMYD 3SUMA 3GTPA 3GTQA 3QWZA 2PJHB 4CS0A 2JA6A 1PQEA 1WC2A 3PLXB 2YU9A 3HU2A 5DYGA 1PPYA 4JP6A 1DMRA 1PYUB 1TWCA 2HCZX 3QQ8A 5FTLA 1BW4A 2R7ZA 1YNND 1R9TA 5FTNA 3X2PA 1CZ5A 5GLFA 3X2KA 3X2MA 1H0HA 2PJJA 4L48A 3GTLA 1WLFA 1TMOA 4JJOA 5FTMA 1TWHA 1PT0A 2PMZA 3ENGA 5B6CA 3X2JA 2NVYA 2JIRA 1E61A 1Y1WA 3CQZA 1CZ4A 3FKIA 4AYBA 4AOKB 3GTGA 1ZYRD 2VPZA 3O5AA 1Y4ZA 1PT1A 3CZBA 1OA9A 1PQHA 4JP7A 2R92A 2Y0SA 2EEOB 1YLEA 2YUJA 4CRZA 1PYQA 3ML1A 3SUKA 3SUJA 1ZC1A 1S3SA 3SULA 2KQAA 1OGYA 4C2MA 1UHDA 1Y1VA 2B63A 1CR5A 2A68D 3TIWA 1AW8B 2JA7A 1QDNA 3QC8A 3HKZA 5GLXA 5GLYA 1E5VA 2G6GA 1SIWA 2BE5D 1WCMA 2PI8A 2AE0X 5T5MD 1E32A 2JIQA 1OA7A 2PICA 4ZM7A 2A69D 5EPPA 1UHEA 2IV2X 2A6HD 4AONB 2E7ZA 1FDOA 2E2HA 3HU1A 2JIMA 3DMRA 2ENGA 3IR6A 4NOHA 1KQGA 1I3QA 4GA6A 3X2IA 5FTKA 4KDIA 1Q16A 1H5NA 5C1BA 1FDIA 2O5JD 4AAYA 5H4UA 3X2NA 3X2GA 1YNJD 1EU1A 1E18A 2NYAA 2DMRA 1SFOA 1KQFA 5DYIA 3X2OA 2BH0A 4ENGA 2GAEA 2WAQA 3X2LA 1E60A 1PQFA 2PNWA 3HU3A 2CW0D 1R7RA 4KDLA 1R27A 1TWGA 1TWFA 3OUGA 4JS7A 3GTMA 2G5DA 2VUMA 5T5ID 1N10A 3IR5A 2JIPA 1IW7D 2KI8A 3TM7B 1VC3B 4FG4A 3GTJA 3M3GA 3GTOA 2R93A 3IR7A 5C18A 4RV0A 4AVRA 5GM9A 4CRYG 2NVXA 1AA6A 1I50A 4KLNA 4FG2A 4KO8A 3QQ7A 1HD5A 4FERA 2NAPA 1TWAA 3D30A 2V3VA 3H0GA 3X2HA 2C45A 4D7ZB 2E2IA 1BW3A 2VPYA 2A6ED 2JA5A 2JIOA 5FTJA 4AZDA 4DMRA 4GA5A 2VPWA 1DMSA 2V45A 4KODA 1Y5IA 1G8JA 3GTKA 1K83A 1QCSA 1G8KA
chains in the Genus database with same CATH topology
3M3GA 4JCWA 3SUKA 4FFTA 4AVRA 3SUJA 1L8FA 5GM9A 3SUMA 5H4UA 3SULA 2KQAA 3X2NA 3X2GA 1WC2A 4FG2A 4JP6A 1HD5A 2HCZX 4FERA 1BW4A 3X2OA 3X2PA 2BH0A 3X2KA 2GAEA 3X2LA 4ENGA 5GLXA 3D30A 3X2MA 1BW3A 2PJJA 3X2HA 2G6GA 4L48A 2PI8A 2AE0X 2PNWA 4JJOA 3ENGA 1OA7A 2PICA 4ZM7A 3X2JA 4JS7A 2G5DA 1N10A 2ENGA 3CZBA 4JP7A 1OA9A 3X2IA 5GLYA 4FG4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3M3G A;  4JCW A;  3SUK A;  4FFT A;  4AVR A;  3SUJ A;  1L8F A;  5GM9 A;  3SUM A;  5H4U A;  3SUL A;  2KQA A;  3X2N A;  3X2G A;  1WC2 A;  4FG2 A;  4JP6 A;  1HD5 A;  2HCZ X;  4FER A;  1BW4 A;  3X2O A;  3X2P A;  2BH0 A;  3X2K A;  2GAE A;  3X2L A;  4ENG A;  5GLX A;  3D30 A;  3X2M A;  1BW3 A;  2PJJ A;  3X2H A;  2G6G A;  4L48 A;  2PI8 A;  2AE0 X;  2PNW A;  4JJO A;  3ENG A;  1OA7 A;  2PIC A;  4ZM7 A;  3X2J A;  4JS7 A;  2G5D A;  1N10 A;  2ENG A;  3CZB A;  4JP7 A;  1OA9 A;  3X2I A;  5GLY A;  4FG4 A; 
#chains in the Genus database with same CATH topology
 4QIW A;  2VPX A;  3CF2 A;  4JCW A;  4FFT A;  2WB1 A;  1L8F A;  1SMY D;  3SUM A;  3GTP A;  3GTQ A;  3QWZ A;  2PJH B;  4CS0 A;  2JA6 A;  1PQE A;  1WC2 A;  3PLX B;  2YU9 A;  3HU2 A;  5DYG A;  1PPY A;  4JP6 A;  1DMR A;  1PYU B;  1TWC A;  2HCZ X;  3QQ8 A;  5FTL A;  1BW4 A;  2R7Z A;  1YNN D;  1R9T A;  5FTN A;  3X2P A;  1CZ5 A;  5GLF A;  3X2K A;  3X2M A;  1H0H A;  2PJJ A;  4L48 A;  3GTL A;  1WLF A;  1TMO A;  4JJO A;  5FTM A;  1TWH A;  1PT0 A;  2PMZ A;  3ENG A;  5B6C A;  3X2J A;  2NVY A;  2JIR A;  1E61 A;  1Y1W A;  3CQZ A;  1CZ4 A;  3FKI A;  4AYB A;  4AOK B;  3GTG A;  1ZYR D;  2VPZ A;  3O5A A;  1Y4Z A;  1PT1 A;  3CZB A;  1OA9 A;  1PQH A;  4JP7 A;  2R92 A;  2Y0S A;  2EEO B;  1YLE A;  2YUJ A;  4CRZ A;  1PYQ A;  3ML1 A;  3SUK A;  3SUJ A;  1ZC1 A;  1S3S A;  3SUL A;  2KQA A;  1OGY A;  4C2M A;  1UHD A;  1Y1V A;  2B63 A;  1CR5 A;  2A68 D;  3TIW A;  1AW8 B;  2JA7 A;  1QDN A;  3QC8 A;  3HKZ A;  5GLX A;  5GLY A;  1E5V A;  2G6G A;  1SIW A;  2BE5 D;  1WCM A;  2PI8 A;  2AE0 X;  5T5M D;  1E32 A;  2JIQ A;  1OA7 A;  2PIC A;  4ZM7 A;  2A69 D;  5EPP A;  1UHE A;  2IV2 X;  2A6H D;  4AON B;  2E7Z A;  1FDO A;  2E2H A;  3HU1 A;  2JIM A;  3DMR A;  2ENG A;  3IR6 A;  4NOH A;  1KQG A;  1I3Q A;  4GA6 A;  3X2I A;  5FTK A;  4KDI A;  1Q16 A;  1H5N A;  5C1B A;  1FDI A;  2O5J D;  4AAY A;  5H4U A;  3X2N A;  3X2G A;  1YNJ D;  1EU1 A;  1E18 A;  2NYA A;  2DMR A;  1SFO A;  1KQF A;  5DYI A;  3X2O A;  2BH0 A;  4ENG A;  2GAE A;  2WAQ A;  3X2L A;  1E60 A;  1PQF A;  2PNW A;  3HU3 A;  2CW0 D;  1R7R A;  4KDL A;  1R27 A;  1TWG A;  1TWF A;  3OUG A;  4JS7 A;  3GTM A;  2G5D A;  2VUM A;  5T5I D;  1N10 A;  3IR5 A;  2JIP A;  1IW7 D;  2KI8 A;  3TM7 B;  1VC3 B;  4FG4 A;  3GTJ A;  3M3G A;  3GTO A;  2R93 A;  3IR7 A;  5C18 A;  4RV0 A;  4AVR A;  5GM9 A;  4CRY G;  2NVX A;  1AA6 A;  1I50 A;  4KLN A;  4FG2 A;  4KO8 A;  3QQ7 A;  1HD5 A;  4FER A;  2NAP A;  1TWA A;  3D30 A;  2V3V A;  3H0G A;  3X2H A;  2C45 A;  4D7Z B;  2E2I A;  1BW3 A;  2VPY A;  2A6E D;  2JA5 A;  2JIO A;  5FTJ A;  4AZD A;  4DMR A;  4GA5 A;  2VPW A;  1DMS A;  2V45 A;  4KOD A;  1Y5I A;  1G8J A;  3GTK A;  1K83 A;  1QCS A;  1G8K A; 
#chains in the Genus database with same CATH homology
 3M3G A;  4JCW A;  3SUK A;  4FFT A;  4AVR A;  3SUJ A;  1L8F A;  5GM9 A;  3SUM A;  5H4U A;  3SUL A;  2KQA A;  3X2N A;  3X2G A;  1WC2 A;  4FG2 A;  4JP6 A;  1HD5 A;  2HCZ X;  4FER A;  1BW4 A;  3X2O A;  3X2P A;  2BH0 A;  3X2K A;  2GAE A;  3X2L A;  4ENG A;  5GLX A;  3D30 A;  3X2M A;  1BW3 A;  2PJJ A;  3X2H A;  2G6G A;  4L48 A;  2PI8 A;  2AE0 X;  2PNW A;  4JJO A;  3ENG A;  1OA7 A;  2PIC A;  4ZM7 A;  3X2J A;  4JS7 A;  2G5D A;  1N10 A;  2ENG A;  3CZB A;  4JP7 A;  1OA9 A;  3X2I A;  5GLY A;  4FG4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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