1PT1A

Unprocessed pyruvoyl dependent aspartate decarboxylase with histidine 11 mutated to alanine
Total Genus 35
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
117
structure length
117
Chain Sequence
b'GSMIRTMLQGKLARVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMK'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Aspartate 1-decarboxylase
molecule tags Lyase
source organism Escherichia coli
publication title Structural constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
total genus 35
structure length 117
sequence length 117
chains with identical sequence B
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-06-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1pt1A00
1Y1WA 1VC3B 1H5NA 5FTLA 5FTMA 2Y0SA 1UHEA 3GTGA 3H0GA 1I3QA 2R93A 3FKIA 2B63A 1E61A 5EPPA 1R9TA 1SFOA 4QIWA 2JA7A 1S3SA 2NYAA 4AZDA 2VPYA 3GTMA 2JIPA 1TWHA 1E60A 1AA6A 5FTKA 1WCMA 1E18A 1PQHA 3OUGA 3QC8A 4RV0A 3GTLA 3HU2A 3DMRA 1TWCA 2WAQA 2JA6A 3QQ8A 2JIOA 2JIRA 4AOKB 1CZ5A 1R27A 3IR7A 1TWFA 4CRZA 1Y4ZA 3HU1A 4GA5A 2C45A 2NVYA 1PQFA 1CZ4A 2JIQA 4KO8A 4KODA 2PMZA 3O5AA 4C2MA 1CR5A 2YU9A 2IV2X 5T5ID 1E32A 1G8JA 3GTJA 4CS0A 1PPYA 1Y1VA 3CQZA 3TIWA 1I50A 4GA6A 2NVXA 5DYGA 4DMRA 1TWAA 1SIWA 1KQGA 2WB1A 4AAYA 1Y5IA 5C1BA 2VPXA 1KQFA 1QDNA 3GTOA 2JA5A 4KDIA 3HKZA 2KI8A 4AONB 1FDOA 1FDIA 1QCSA 2VPZA 1AW8B 1E5VA 1TMOA 3ML1A 1G8KA 2E7ZA 5GLFA 2VUMA 3HU3A 1DMRA 3GTQA 4KDLA 2DMRA 2JIMA 2NAPA 5FTJA 2PJHB 3CF2A 5DYIA 3QQ7A 5FTNA 1TWGA 1H0HA 1WLFA 3IR6A 5C18A 1DMSA 2E2IA 2V3VA 3QWZA 2EEOB 1PYUB 1PQEA 1OGYA 1K83A 3TM7B 3GTPA 4CRYG 1Q16A 1EU1A 1UHDA 5B6CA 1PYQA 4D7ZB 1PT0A 1YLEA 3PLXB 2E2HA 2R92A 1R7RA 5T5MD 1PT1A 4AYBA 4KLNA 1IW7D 2R7ZA 2VPWA 3GTKA 2V45A 3IR5A
chains in the Genus database with same CATH superfamily
1Y1WA 1VC3B 1H5NA 2YUJA 5FTLA 5FTMA 2Y0SA 1UHEA 3GTGA 2O5JD 3H0GA 1I3QA 2R93A 3FKIA 2PJJA 4JP7A 1YNJD 2B63A 1E61A 5EPPA 4ZM7A 1R9TA 4QIWA 1SFOA 2JA7A 1S3SA 2NYAA 3X2IA 4AZDA 2VPYA 3GTMA 4FFTA 2JIPA 1TWHA 2A6ED 1E60A 1AA6A 5FTKA 1WCMA 1E18A 1PQHA 3OUGA 4JS7A 3X2NA 3QC8A 4FG2A 4RV0A 1N10A 3DMRA 3HU2A 3GTLA 1TWCA 2WAQA 2JA6A 3QQ8A 2JIOA 2BH0A 2JIRA 4AOKB 1ZYRD 1CZ5A 1R27A 3IR7A 1TWFA 4CRZA 1Y4ZA 3HU1A 1L8FA 4GA5A 2C45A 2NVYA 1PQFA 1CZ4A 2JIQA 5H4UA 3D30A 4KO8A 4KODA 2PMZA 3O5AA 4C2MA 1CR5A 1HD5A 2CW0D 2YU9A 2IV2X 5T5ID 1E32A 1G8JA 5GLYA 3CZBA 4CS0A 3GTJA 1PPYA 1Y1VA 3CQZA 1WC2A 3TIWA 4GA6A 2A68D 1I50A 2NVXA 5DYGA 4DMRA 2JA5A 2ENGA 4NOHA 1TWAA 2AE0X 1SIWA 1KQGA 2WB1A 3M3GA 2GAEA 4AAYA 1Y5IA 5C1BA 2VPXA 3SULA 1QDNA 5GM9A 1KQFA 4KDIA 3HKZA 3GTOA 2KI8A 2A69D 4AONB 3X2OA 1FDOA 1FDIA 2A6HD 1QCSA 2VPZA 3X2MA 3X2PA 1ZC1A 1AW8B 1E5VA 1TMOA 3ML1A 1G8KA 4AVRA 4JCWA 2E7ZA 2BE5D 5GLFA 2VUMA 3ENGA 3HU3A 1DMRA 4FERA 3GTQA 4KDLA 5GLXA 2DMRA 2JIMA 2NAPA 5FTJA 3SUJA 2PJHB 3CF2A 5DYIA 3QQ7A 5FTNA 3X2LA 1TWGA 1H0HA 1WLFA 3IR6A 5C18A 1DMSA 2PNWA 2V3VA 3QWZA 2E2IA 1BW3A 2EEOB 1PYUB 1PQEA 1OGYA 1K83A 3TM7B 3GTPA 4CRYG 1Q16A 1EU1A 1UHDA 2PICA 5B6CA 1PYQA 1OA9A 1PT0A 1YLEA 3SUMA 4D7ZB 3X2HA 4ENGA 4L48A 1SMYD 3PLXB 1OA7A 2E2HA 4FG4A 2R92A 3X2KA 2G6GA 2KQAA 3X2GA 2PI8A 1R7RA 1YNND 3X2JA 5T5MD 1PT1A 2G5DA 4AYBA 4KLNA 1IW7D 4JP6A 3SUKA 4JJOA 2R7ZA 2VPWA 3GTKA 2V45A 1BW4A 3IR5A 2HCZX
chains in the Genus database with same CATH topology
1Y1WA 1VC3B 1H5NA 2YUJA 5FTLA 5FTMA 2Y0SA 1UHEA 3GTGA 2O5JD 3H0GA 1I3QA 2R93A 3FKIA 2PJJA 1YNJD 2B63A 1E61A 5EPPA 1R9TA 1SFOA 4QIWA 2JA7A 1S3SA 2NYAA 4AZDA 2VPYA 3GTMA 2JIPA 1TWHA 1E60A 2A6ED 1AA6A 5FTKA 1WCMA 1E18A 1PQHA 3OUGA 3QC8A 4RV0A 3GTLA 3DMRA 3HU2A 1TWCA 2WAQA 2JA6A 3QQ8A 2JIOA 2JIRA 4AOKB 1ZYRD 1CZ5A 1R27A 3IR7A 1TWFA 4CRZA 1Y4ZA 3HU1A 4GA5A 2C45A 2NVYA 1PQFA 1CZ4A 2JIQA 4KO8A 4KODA 2PMZA 3O5AA 4C2MA 1CR5A 2CW0D 2YU9A 2IV2X 5T5ID 1E32A 1G8JA 3CZBA 4CS0A 3GTJA 1PPYA 1Y1VA 3CQZA 3TIWA 1I50A 4GA6A 2A68D 2NVXA 5DYGA 4DMRA 4NOHA 1TWAA 2AE0X 1SIWA 1KQGA 2WB1A 2GAEA 4AAYA 1Y5IA 5C1BA 2VPXA 1KQFA 1QDNA 3GTOA 2JA5A 4KDIA 3HKZA 2KI8A 2A69D 4AONB 1FDOA 1FDIA 2A6HD 1QCSA 2VPZA 1ZC1A 1AW8B 1E5VA 1TMOA 3ML1A 1G8KA 2E7ZA 2BE5D 5GLFA 2VUMA 3HU3A 1DMRA 3GTQA 4KDLA 2DMRA 2JIMA 2NAPA 5FTJA 2PJHB 3CF2A 5DYIA 3QQ7A 5FTNA 1TWGA 1H0HA 1WLFA 3IR6A 5C18A 1DMSA 2PNWA 2V3VA 3QWZA 2E2IA 2EEOB 1PYUB 1PQEA 1OGYA 1K83A 3TM7B 3GTPA 4CRYG 1Q16A 1EU1A 1UHDA 2PICA 5B6CA 1PYQA 4D7ZB 1PT0A 1YLEA 1SMYD 3PLXB 2E2HA 2R92A 2G6GA 2PI8A 1R7RA 1YNND 5T5MD 1PT1A 2G5DA 4AYBA 4KLNA 1IW7D 2R7ZA 2VPWA 3GTKA 2V45A 3IR5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Y1W A;  1VC3 B;  1H5N A;  5FTL A;  5FTM A;  2Y0S A;  1UHE A;  3GTG A;  3H0G A;  1I3Q A;  2R93 A;  3FKI A;  2B63 A;  1E61 A;  5EPP A;  1R9T A;  1SFO A;  4QIW A;  2JA7 A;  1S3S A;  2NYA A;  4AZD A;  2VPY A;  3GTM A;  2JIP A;  1TWH A;  1E60 A;  1AA6 A;  5FTK A;  1WCM A;  1E18 A;  1PQH A;  3OUG A;  3QC8 A;  4RV0 A;  3GTL A;  3HU2 A;  3DMR A;  1TWC A;  2WAQ A;  2JA6 A;  3QQ8 A;  2JIO A;  2JIR A;  4AOK B;  1CZ5 A;  1R27 A;  3IR7 A;  1TWF A;  4CRZ A;  1Y4Z A;  3HU1 A;  4GA5 A;  2C45 A;  2NVY A;  1PQF A;  1CZ4 A;  2JIQ A;  4KO8 A;  4KOD A;  2PMZ A;  3O5A A;  4C2M A;  1CR5 A;  2YU9 A;  2IV2 X;  5T5I D;  1E32 A;  1G8J A;  3GTJ A;  4CS0 A;  1PPY A;  1Y1V A;  3CQZ A;  3TIW A;  1I50 A;  4GA6 A;  2NVX A;  5DYG A;  4DMR A;  1TWA A;  1SIW A;  1KQG A;  2WB1 A;  4AAY A;  1Y5I A;  5C1B A;  2VPX A;  1KQF A;  1QDN A;  3GTO A;  2JA5 A;  4KDI A;  3HKZ A;  2KI8 A;  4AON B;  1FDO A;  1FDI A;  1QCS A;  2VPZ A;  1AW8 B;  1E5V A;  1TMO A;  3ML1 A;  1G8K A;  2E7Z A;  5GLF A;  2VUM A;  3HU3 A;  1DMR A;  3GTQ A;  4KDL A;  2DMR A;  2JIM A;  2NAP A;  5FTJ A;  2PJH B;  3CF2 A;  5DYI A;  3QQ7 A;  5FTN A;  1TWG A;  1H0H A;  1WLF A;  3IR6 A;  5C18 A;  1DMS A;  2E2I A;  2V3V A;  3QWZ A;  2EEO B;  1PYU B;  1PQE A;  1OGY A;  1K83 A;  3TM7 B;  3GTP A;  4CRY G;  1Q16 A;  1EU1 A;  1UHD A;  5B6C A;  1PYQ A;  4D7Z B;  1PT0 A;  1YLE A;  3PLX B;  2E2H A;  2R92 A;  1R7R A;  5T5M D;  1PT1 A;  4AYB A;  4KLN A;  1IW7 D;  2R7Z A;  2VPW A;  3GTK A;  2V45 A;  3IR5 A; 
#chains in the Genus database with same CATH topology
 1Y1W A;  1VC3 B;  1H5N A;  2YUJ A;  5FTL A;  5FTM A;  2Y0S A;  1UHE A;  3GTG A;  2O5J D;  3H0G A;  1I3Q A;  2R93 A;  3FKI A;  2PJJ A;  4JP7 A;  1YNJ D;  2B63 A;  1E61 A;  5EPP A;  4ZM7 A;  1R9T A;  4QIW A;  1SFO A;  2JA7 A;  1S3S A;  2NYA A;  3X2I A;  4AZD A;  2VPY A;  3GTM A;  4FFT A;  2JIP A;  1TWH A;  2A6E D;  1E60 A;  1AA6 A;  5FTK A;  1WCM A;  1E18 A;  1PQH A;  3OUG A;  4JS7 A;  3X2N A;  3QC8 A;  4FG2 A;  4RV0 A;  1N10 A;  3DMR A;  3HU2 A;  3GTL A;  1TWC A;  2WAQ A;  2JA6 A;  3QQ8 A;  2JIO A;  2BH0 A;  2JIR A;  4AOK B;  1ZYR D;  1CZ5 A;  1R27 A;  3IR7 A;  1TWF A;  4CRZ A;  1Y4Z A;  3HU1 A;  1L8F A;  4GA5 A;  2C45 A;  2NVY A;  1PQF A;  1CZ4 A;  2JIQ A;  5H4U A;  3D30 A;  4KO8 A;  4KOD A;  2PMZ A;  3O5A A;  4C2M A;  1CR5 A;  1HD5 A;  2CW0 D;  2YU9 A;  2IV2 X;  5T5I D;  1E32 A;  1G8J A;  5GLY A;  3CZB A;  4CS0 A;  3GTJ A;  1PPY A;  1Y1V A;  3CQZ A;  1WC2 A;  3TIW A;  4GA6 A;  2A68 D;  1I50 A;  2NVX A;  5DYG A;  4DMR A;  2JA5 A;  2ENG A;  4NOH A;  1TWA A;  2AE0 X;  1SIW A;  1KQG A;  2WB1 A;  3M3G A;  2GAE A;  4AAY A;  1Y5I A;  5C1B A;  2VPX A;  3SUL A;  1QDN A;  5GM9 A;  1KQF A;  4KDI A;  3HKZ A;  3GTO A;  2KI8 A;  2A69 D;  4AON B;  3X2O A;  1FDO A;  1FDI A;  2A6H D;  1QCS A;  2VPZ A;  3X2M A;  3X2P A;  1ZC1 A;  1AW8 B;  1E5V A;  1TMO A;  3ML1 A;  1G8K A;  4AVR A;  4JCW A;  2E7Z A;  2BE5 D;  5GLF A;  2VUM A;  3ENG A;  3HU3 A;  1DMR A;  4FER A;  3GTQ A;  4KDL A;  5GLX A;  2DMR A;  2JIM A;  2NAP A;  5FTJ A;  3SUJ A;  2PJH B;  3CF2 A;  5DYI A;  3QQ7 A;  5FTN A;  3X2L A;  1TWG A;  1H0H A;  1WLF A;  3IR6 A;  5C18 A;  1DMS A;  2PNW A;  2V3V A;  3QWZ A;  2E2I A;  1BW3 A;  2EEO B;  1PYU B;  1PQE A;  1OGY A;  1K83 A;  3TM7 B;  3GTP A;  4CRY G;  1Q16 A;  1EU1 A;  1UHD A;  2PIC A;  5B6C A;  1PYQ A;  1OA9 A;  1PT0 A;  1YLE A;  3SUM A;  4D7Z B;  3X2H A;  4ENG A;  4L48 A;  1SMY D;  3PLX B;  1OA7 A;  2E2H A;  4FG4 A;  2R92 A;  3X2K A;  2G6G A;  2KQA A;  3X2G A;  2PI8 A;  1R7R A;  1YNN D;  3X2J A;  5T5M D;  1PT1 A;  2G5D A;  4AYB A;  4KLN A;  1IW7 D;  4JP6 A;  3SUK A;  4JJO A;  2R7Z A;  2VPW A;  3GTK A;  2V45 A;  1BW4 A;  3IR5 A;  2HCZ X; 
#chains in the Genus database with same CATH homology
 1Y1W A;  1VC3 B;  1H5N A;  2YUJ A;  5FTL A;  5FTM A;  2Y0S A;  1UHE A;  3GTG A;  2O5J D;  3H0G A;  1I3Q A;  2R93 A;  3FKI A;  2PJJ A;  1YNJ D;  2B63 A;  1E61 A;  5EPP A;  1R9T A;  1SFO A;  4QIW A;  2JA7 A;  1S3S A;  2NYA A;  4AZD A;  2VPY A;  3GTM A;  2JIP A;  1TWH A;  1E60 A;  2A6E D;  1AA6 A;  5FTK A;  1WCM A;  1E18 A;  1PQH A;  3OUG A;  3QC8 A;  4RV0 A;  3GTL A;  3DMR A;  3HU2 A;  1TWC A;  2WAQ A;  2JA6 A;  3QQ8 A;  2JIO A;  2JIR A;  4AOK B;  1ZYR D;  1CZ5 A;  1R27 A;  3IR7 A;  1TWF A;  4CRZ A;  1Y4Z A;  3HU1 A;  4GA5 A;  2C45 A;  2NVY A;  1PQF A;  1CZ4 A;  2JIQ A;  4KO8 A;  4KOD A;  2PMZ A;  3O5A A;  4C2M A;  1CR5 A;  2CW0 D;  2YU9 A;  2IV2 X;  5T5I D;  1E32 A;  1G8J A;  3CZB A;  4CS0 A;  3GTJ A;  1PPY A;  1Y1V A;  3CQZ A;  3TIW A;  1I50 A;  4GA6 A;  2A68 D;  2NVX A;  5DYG A;  4DMR A;  4NOH A;  1TWA A;  2AE0 X;  1SIW A;  1KQG A;  2WB1 A;  2GAE A;  4AAY A;  1Y5I A;  5C1B A;  2VPX A;  1KQF A;  1QDN A;  3GTO A;  2JA5 A;  4KDI A;  3HKZ A;  2KI8 A;  2A69 D;  4AON B;  1FDO A;  1FDI A;  2A6H D;  1QCS A;  2VPZ A;  1ZC1 A;  1AW8 B;  1E5V A;  1TMO A;  3ML1 A;  1G8K A;  2E7Z A;  2BE5 D;  5GLF A;  2VUM A;  3HU3 A;  1DMR A;  3GTQ A;  4KDL A;  2DMR A;  2JIM A;  2NAP A;  5FTJ A;  2PJH B;  3CF2 A;  5DYI A;  3QQ7 A;  5FTN A;  1TWG A;  1H0H A;  1WLF A;  3IR6 A;  5C18 A;  1DMS A;  2PNW A;  2V3V A;  3QWZ A;  2E2I A;  2EEO B;  1PYU B;  1PQE A;  1OGY A;  1K83 A;  3TM7 B;  3GTP A;  4CRY G;  1Q16 A;  1EU1 A;  1UHD A;  2PIC A;  5B6C A;  1PYQ A;  4D7Z B;  1PT0 A;  1YLE A;  1SMY D;  3PLX B;  2E2H A;  2R92 A;  2G6G A;  2PI8 A;  1R7R A;  1YNN D;  5T5M D;  1PT1 A;  2G5D A;  4AYB A;  4KLN A;  1IW7 D;  2R7Z A;  2VPW A;  3GTK A;  2V45 A;  3IR5 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...