1PT1A

Unprocessed pyruvoyl dependent aspartate decarboxylase with histidine 11 mutated to alanine
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
117
structure length
117
Chain Sequence
GSMIRTMLQGKLARVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Aspartate 1-decarboxylase
publication title Structural constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
source organism Escherichia coli
molecule tags Lyase
total genus 35
structure length 117
sequence length 117
chains with identical sequence B
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-06-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1pt1A00
1YLEA 5B6CA 2JIQA 1CR5A 2VUMA 1PQFA 1E18A 2VPYA 2JA5A 3PLXB 5FTLA 1PQHA 3DMRA 4CRZA 1PT0A 5FTKA 3O5AA 1I3QA 3GTPA 4RV0A 1SIWA 3IR6A 5C18A 1KQGA 1G8JA 2DMRA 2R92A 2E2HA 2JA6A 3CQZA 3ML1A 3HU1A 1R9TA 4AYBA 3GTGA 2JIMA 4CRYG 2E2IA 1S3SA 1PT1A 1CZ5A 1UHDA 1Q16A 4AOKB 4KLNA 1AA6A 1H0HA 3OUGA 3FKIA 3TIWA 5DYGA 1PYQA 1G8KA 1Y4ZA 3QC8A 4GA6A 3GTMA 2VPZA 2B63A 2JIPA 1OGYA 2NAPA 1WCMA 5C1BA 4QIWA 1QCSA 1I50A 1PYUB 4AZDA 2PJHB 2VPWA 2WB1A 2Y0SA 1R7RA 1Y5IA 2NVXA 1E32A 2YU9A 5T5MD 3IR7A 1Y1WA 1DMSA 1TMOA 5GLFA 1E61A 3QWZA 4D7ZB 2JA7A 3GTKA 1E5VA 2JIOA 3GTJA 1CZ4A 3TM7B 2IV2X 2WAQA 4KDLA 3GTQA 1Y1VA 1VC3B 1QDNA 3IR5A 2V45A 1TWGA 2JIRA 2E7ZA 1FDIA 3HKZA 4KDIA 4KO8A 2NVYA 5FTMA 4AAYA 1SFOA 1EU1A 1TWHA 1FDOA 1R27A 4GA5A 1TWFA 2KI8A 1K83A 1AW8B 1PQEA 1H5NA 3HU3A 1UHEA 1E60A 1PPYA 1WLFA 1IW7D 5FTJA 4C2MA 4AONB 3CF2A 5T5ID 1KQFA 5EPPA 3GTOA 1TWCA 4KODA 1TWAA 2VPXA 3QQ8A 3GTLA 4DMRA 5DYIA 2R7ZA 3H0GA 1DMRA 2R93A 4CS0A 2EEOB 3HU2A 2NYAA 2PMZA 2C45A 5FTNA 3QQ7A 2V3VA
chains in the Genus database with same CATH superfamily
1YLEA 5B6CA 2JIQA 3ENGA 1CR5A 4JJOA 2VUMA 1PQFA 1E18A 2VPYA 2JA5A 3PLXB 3SUMA 5FTLA 1BW3A 1SMYD 1ZYRD 5GLXA 1PQHA 3DMRA 2A6HD 4CRZA 1PT0A 5FTKA 3O5AA 2A68D 1I3QA 3GTPA 4RV0A 1SIWA 3IR6A 1YNND 5C18A 1KQGA 1G8JA 2DMRA 4JP6A 2A69D 1WC2A 2R92A 2E2HA 2JA6A 3CQZA 3ML1A 3HU1A 1R9TA 4AYBA 3GTGA 3SUKA 4ENGA 4AVRA 2JIMA 3X2IA 4CRYG 2E2IA 1S3SA 3X2JA 1ZC1A 1PT1A 4FFTA 1CZ5A 1UHDA 1Q16A 4AOKB 4KLNA 1AA6A 1H0HA 3OUGA 3FKIA 3TIWA 2BE5D 2GAEA 3X2GA 5DYGA 5GM9A 1PYQA 1G8KA 1Y4ZA 3QC8A 4GA6A 3X2MA 3GTMA 2VPZA 2B63A 2JIPA 1OGYA 2NAPA 1WCMA 5C1BA 4QIWA 1QCSA 1L8FA 1I50A 1PYUB 2CW0D 4AZDA 4FG2A 2PJHB 2VPWA 2WB1A 2ENGA 2Y0SA 3X2HA 1R7RA 3SULA 2G5DA 2PI8A 1Y5IA 2O5JD 2NVXA 1E32A 2YU9A 5T5MD 3IR7A 4JS7A 1Y1WA 1DMSA 1TMOA 2A6ED 5GLFA 2PICA 1E61A 3QWZA 4D7ZB 2JA7A 2KQAA 1E5VA 3GTKA 1BW4A 3X2OA 2JIOA 3GTJA 1CZ4A 5GLYA 3TM7B 2PJJA 2IV2X 2WAQA 4KDLA 3SUJA 3X2KA 1Y1VA 3GTQA 1VC3B 1QDNA 3IR5A 1OA7A 2V45A 1TWGA 2JIRA 2E7ZA 1OA9A 1FDIA 3HKZA 4KDIA 4KO8A 2NVYA 4ZM7A 5FTMA 4AAYA 1SFOA 1EU1A 1TWHA 1FDOA 1R27A 4L48A 1N10A 3X2NA 3CZBA 2HCZX 4GA5A 1TWFA 2KI8A 2BH0A 1K83A 1AW8B 1PQEA 1H5NA 3HU3A 1UHEA 2YUJA 1E60A 1PPYA 4NOHA 3M3GA 3X2LA 1WLFA 1IW7D 5FTJA 4C2MA 4JP7A 4JCWA 4AONB 2G6GA 3CF2A 5T5ID 1KQFA 2PNWA 5EPPA 3GTOA 1HD5A 1TWCA 4KODA 4FERA 2AE0X 1TWAA 2VPXA 4FG4A 3QQ8A 3GTLA 4DMRA 1YNJD 5DYIA 2R7ZA 3D30A 3H0GA 5H4UA 1DMRA 2R93A 4CS0A 2EEOB 3HU2A 3X2PA 2NYAA 2PMZA 2C45A 5FTNA 3QQ7A 2V3VA
chains in the Genus database with same CATH topology
1YLEA 5B6CA 2JIQA 1CR5A 2VUMA 1PQFA 1E18A 2VPYA 2JA5A 3PLXB 5FTLA 1SMYD 1ZYRD 1PQHA 3DMRA 2A6HD 4CRZA 1PT0A 5FTKA 3O5AA 2A68D 1I3QA 3GTPA 4RV0A 1SIWA 3IR6A 1YNND 5C18A 1KQGA 1G8JA 2DMRA 2A69D 2R92A 2E2HA 2NYAA 2JA6A 3CQZA 3ML1A 3HU1A 1R9TA 4AYBA 3GTGA 2JIMA 4CRYG 2E2IA 1S3SA 1ZC1A 1PT1A 1CZ5A 1UHDA 1Q16A 4AOKB 4KLNA 1AA6A 1H0HA 3OUGA 3FKIA 3TIWA 2BE5D 2GAEA 5DYGA 1PYQA 1G8KA 1Y4ZA 3QC8A 4GA6A 3GTMA 2VPZA 2B63A 2JIPA 1OGYA 2NAPA 1WCMA 5C1BA 4QIWA 1QCSA 1I50A 1PYUB 2CW0D 4AZDA 2PJHB 2VPWA 2WB1A 2Y0SA 1R7RA 2G5DA 2PI8A 1Y5IA 2O5JD 2NVXA 1E32A 2YU9A 5T5MD 3IR7A 1Y1WA 1DMSA 1TMOA 2A6ED 5GLFA 1E61A 3QWZA 4D7ZB 2JA7A 3GTKA 1E5VA 2JIOA 3GTJA 1CZ4A 3TM7B 2PJJA 2IV2X 2WAQA 4KDLA 3GTQA 1Y1VA 1VC3B 1QDNA 3IR5A 2V45A 1TWGA 2JIRA 2E7ZA 1FDIA 3HKZA 4KDIA 4KO8A 2NVYA 5FTMA 4AAYA 1SFOA 1EU1A 1TWHA 1FDOA 1R27A 3CZBA 4GA5A 1TWFA 2KI8A 1K83A 1AW8B 1PQEA 1H5NA 3HU3A 1UHEA 2YUJA 1E60A 1PPYA 4NOHA 1WLFA 1IW7D 5FTJA 4C2MA 4AONB 2G6GA 3CF2A 5T5ID 1KQFA 2PNWA 5EPPA 3GTOA 1TWCA 4KODA 2AE0X 1TWAA 2VPXA 3QQ8A 3GTLA 4DMRA 1YNJD 5DYIA 2R7ZA 3H0GA 1DMRA 2R93A 4CS0A 2EEOB 3HU2A 2PICA 2PMZA 2C45A 5FTNA 3QQ7A 2V3VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YLE A;  5B6C A;  2JIQ A;  1CR5 A;  2VUM A;  1PQF A;  1E18 A;  2VPY A;  2JA5 A;  3PLX B;  5FTL A;  1PQH A;  3DMR A;  4CRZ A;  1PT0 A;  5FTK A;  3O5A A;  1I3Q A;  3GTP A;  4RV0 A;  1SIW A;  3IR6 A;  5C18 A;  1KQG A;  1G8J A;  2DMR A;  2R92 A;  2E2H A;  2JA6 A;  3CQZ A;  3ML1 A;  3HU1 A;  1R9T A;  4AYB A;  3GTG A;  2JIM A;  4CRY G;  2E2I A;  1S3S A;  1PT1 A;  1CZ5 A;  1UHD A;  1Q16 A;  4AOK B;  4KLN A;  1AA6 A;  1H0H A;  3OUG A;  3FKI A;  3TIW A;  5DYG A;  1PYQ A;  1G8K A;  1Y4Z A;  3QC8 A;  4GA6 A;  3GTM A;  2VPZ A;  2B63 A;  2JIP A;  1OGY A;  2NAP A;  1WCM A;  5C1B A;  4QIW A;  1QCS A;  1I50 A;  1PYU B;  4AZD A;  2PJH B;  2VPW A;  2WB1 A;  2Y0S A;  1R7R A;  1Y5I A;  2NVX A;  1E32 A;  2YU9 A;  5T5M D;  3IR7 A;  1Y1W A;  1DMS A;  1TMO A;  5GLF A;  1E61 A;  3QWZ A;  4D7Z B;  2JA7 A;  3GTK A;  1E5V A;  2JIO A;  3GTJ A;  1CZ4 A;  3TM7 B;  2IV2 X;  2WAQ A;  4KDL A;  3GTQ A;  1Y1V A;  1VC3 B;  1QDN A;  3IR5 A;  2V45 A;  1TWG A;  2JIR A;  2E7Z A;  1FDI A;  3HKZ A;  4KDI A;  4KO8 A;  2NVY A;  5FTM A;  4AAY A;  1SFO A;  1EU1 A;  1TWH A;  1FDO A;  1R27 A;  4GA5 A;  1TWF A;  2KI8 A;  1K83 A;  1AW8 B;  1PQE A;  1H5N A;  3HU3 A;  1UHE A;  1E60 A;  1PPY A;  1WLF A;  1IW7 D;  5FTJ A;  4C2M A;  4AON B;  3CF2 A;  5T5I D;  1KQF A;  5EPP A;  3GTO A;  1TWC A;  4KOD A;  1TWA A;  2VPX A;  3QQ8 A;  3GTL A;  4DMR A;  5DYI A;  2R7Z A;  3H0G A;  1DMR A;  2R93 A;  4CS0 A;  2EEO B;  3HU2 A;  2NYA A;  2PMZ A;  2C45 A;  5FTN A;  3QQ7 A;  2V3V A; 
#chains in the Genus database with same CATH topology
 1YLE A;  5B6C A;  2JIQ A;  3ENG A;  1CR5 A;  4JJO A;  2VUM A;  1PQF A;  1E18 A;  2VPY A;  2JA5 A;  3PLX B;  3SUM A;  5FTL A;  1BW3 A;  1SMY D;  1ZYR D;  5GLX A;  1PQH A;  3DMR A;  2A6H D;  4CRZ A;  1PT0 A;  5FTK A;  3O5A A;  2A68 D;  1I3Q A;  3GTP A;  4RV0 A;  1SIW A;  3IR6 A;  1YNN D;  5C18 A;  1KQG A;  1G8J A;  2DMR A;  4JP6 A;  2A69 D;  1WC2 A;  2R92 A;  2E2H A;  2JA6 A;  3CQZ A;  3ML1 A;  3HU1 A;  1R9T A;  4AYB A;  3GTG A;  3SUK A;  4ENG A;  4AVR A;  2JIM A;  3X2I A;  4CRY G;  2E2I A;  1S3S A;  3X2J A;  1ZC1 A;  1PT1 A;  4FFT A;  1CZ5 A;  1UHD A;  1Q16 A;  4AOK B;  4KLN A;  1AA6 A;  1H0H A;  3OUG A;  3FKI A;  3TIW A;  2BE5 D;  2GAE A;  3X2G A;  5DYG A;  5GM9 A;  1PYQ A;  1G8K A;  1Y4Z A;  3QC8 A;  4GA6 A;  3X2M A;  3GTM A;  2VPZ A;  2B63 A;  2JIP A;  1OGY A;  2NAP A;  1WCM A;  5C1B A;  4QIW A;  1QCS A;  1L8F A;  1I50 A;  1PYU B;  2CW0 D;  4AZD A;  4FG2 A;  2PJH B;  2VPW A;  2WB1 A;  2ENG A;  2Y0S A;  3X2H A;  1R7R A;  3SUL A;  2G5D A;  2PI8 A;  1Y5I A;  2O5J D;  2NVX A;  1E32 A;  2YU9 A;  5T5M D;  3IR7 A;  4JS7 A;  1Y1W A;  1DMS A;  1TMO A;  2A6E D;  5GLF A;  2PIC A;  1E61 A;  3QWZ A;  4D7Z B;  2JA7 A;  2KQA A;  1E5V A;  3GTK A;  1BW4 A;  3X2O A;  2JIO A;  3GTJ A;  1CZ4 A;  5GLY A;  3TM7 B;  2PJJ A;  2IV2 X;  2WAQ A;  4KDL A;  3SUJ A;  3X2K A;  1Y1V A;  3GTQ A;  1VC3 B;  1QDN A;  3IR5 A;  1OA7 A;  2V45 A;  1TWG A;  2JIR A;  2E7Z A;  1OA9 A;  1FDI A;  3HKZ A;  4KDI A;  4KO8 A;  2NVY A;  4ZM7 A;  5FTM A;  4AAY A;  1SFO A;  1EU1 A;  1TWH A;  1FDO A;  1R27 A;  4L48 A;  1N10 A;  3X2N A;  3CZB A;  2HCZ X;  4GA5 A;  1TWF A;  2KI8 A;  2BH0 A;  1K83 A;  1AW8 B;  1PQE A;  1H5N A;  3HU3 A;  1UHE A;  2YUJ A;  1E60 A;  1PPY A;  4NOH A;  3M3G A;  3X2L A;  1WLF A;  1IW7 D;  5FTJ A;  4C2M A;  4JP7 A;  4JCW A;  4AON B;  2G6G A;  3CF2 A;  5T5I D;  1KQF A;  2PNW A;  5EPP A;  3GTO A;  1HD5 A;  1TWC A;  4KOD A;  4FER A;  2AE0 X;  1TWA A;  2VPX A;  4FG4 A;  3QQ8 A;  3GTL A;  4DMR A;  1YNJ D;  5DYI A;  2R7Z A;  3D30 A;  3H0G A;  5H4U A;  1DMR A;  2R93 A;  4CS0 A;  2EEO B;  3HU2 A;  3X2P A;  2NYA A;  2PMZ A;  2C45 A;  5FTN A;  3QQ7 A;  2V3V A; 
#chains in the Genus database with same CATH homology
 1YLE A;  5B6C A;  2JIQ A;  1CR5 A;  2VUM A;  1PQF A;  1E18 A;  2VPY A;  2JA5 A;  3PLX B;  5FTL A;  1SMY D;  1ZYR D;  1PQH A;  3DMR A;  2A6H D;  4CRZ A;  1PT0 A;  5FTK A;  3O5A A;  2A68 D;  1I3Q A;  3GTP A;  4RV0 A;  1SIW A;  3IR6 A;  1YNN D;  5C18 A;  1KQG A;  1G8J A;  2DMR A;  2A69 D;  2R92 A;  2E2H A;  2NYA A;  2JA6 A;  3CQZ A;  3ML1 A;  3HU1 A;  1R9T A;  4AYB A;  3GTG A;  2JIM A;  4CRY G;  2E2I A;  1S3S A;  1ZC1 A;  1PT1 A;  1CZ5 A;  1UHD A;  1Q16 A;  4AOK B;  4KLN A;  1AA6 A;  1H0H A;  3OUG A;  3FKI A;  3TIW A;  2BE5 D;  2GAE A;  5DYG A;  1PYQ A;  1G8K A;  1Y4Z A;  3QC8 A;  4GA6 A;  3GTM A;  2VPZ A;  2B63 A;  2JIP A;  1OGY A;  2NAP A;  1WCM A;  5C1B A;  4QIW A;  1QCS A;  1I50 A;  1PYU B;  2CW0 D;  4AZD A;  2PJH B;  2VPW A;  2WB1 A;  2Y0S A;  1R7R A;  2G5D A;  2PI8 A;  1Y5I A;  2O5J D;  2NVX A;  1E32 A;  2YU9 A;  5T5M D;  3IR7 A;  1Y1W A;  1DMS A;  1TMO A;  2A6E D;  5GLF A;  1E61 A;  3QWZ A;  4D7Z B;  2JA7 A;  3GTK A;  1E5V A;  2JIO A;  3GTJ A;  1CZ4 A;  3TM7 B;  2PJJ A;  2IV2 X;  2WAQ A;  4KDL A;  3GTQ A;  1Y1V A;  1VC3 B;  1QDN A;  3IR5 A;  2V45 A;  1TWG A;  2JIR A;  2E7Z A;  1FDI A;  3HKZ A;  4KDI A;  4KO8 A;  2NVY A;  5FTM A;  4AAY A;  1SFO A;  1EU1 A;  1TWH A;  1FDO A;  1R27 A;  3CZB A;  4GA5 A;  1TWF A;  2KI8 A;  1K83 A;  1AW8 B;  1PQE A;  1H5N A;  3HU3 A;  1UHE A;  2YUJ A;  1E60 A;  1PPY A;  4NOH A;  1WLF A;  1IW7 D;  5FTJ A;  4C2M A;  4AON B;  2G6G A;  3CF2 A;  5T5I D;  1KQF A;  2PNW A;  5EPP A;  3GTO A;  1TWC A;  4KOD A;  2AE0 X;  1TWA A;  2VPX A;  3QQ8 A;  3GTL A;  4DMR A;  1YNJ D;  5DYI A;  2R7Z A;  3H0G A;  1DMR A;  2R93 A;  4CS0 A;  2EEO B;  3HU2 A;  2PIC A;  2PMZ A;  2C45 A;  5FTN A;  3QQ7 A;  2V3V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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