1PT1A

Unprocessed pyruvoyl dependent aspartate decarboxylase with histidine 11 mutated to alanine
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
117
structure length
117
Chain Sequence
GSMIRTMLQGKLARVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
source organism Escherichia coli
molecule tags Lyase
molecule keywords Aspartate 1-decarboxylase
total genus 35
structure length 117
sequence length 117
chains with identical sequence B
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-06-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1pt1A00
1H0HA 1WLFA 3HU3A 1G8JA 1IW7D 1PT0A 3O5AA 1G8KA 4GA6A 2V45A 3OUGA 4KDLA 3CQZA 2JA6A 2EEOB 1AW8B 1TMOA 4CRYG 2E2IA 4AONB 1VC3B 4KODA 2JIMA 1PQEA 3IR7A 5FTMA 2VUMA 3QWZA 2YU9A 3GTQA 1DMRA 5B6CA 2JA5A 3DMRA 5EPPA 3TIWA 3H0GA 3FKIA 3QQ8A 3GTJA 1FDIA 2B63A 5C1BA 2R92A 1SFOA 5C18A 2JIOA 1QCSA 5FTKA 4RV0A 1CR5A 1Y1WA 1YLEA 3HU1A 4C2MA 1E5VA 4KLNA 3GTPA 2IV2X 2VPXA 1Y5IA 2VPWA 3GTKA 1E32A 5GLFA 1EU1A 4DMRA 1TWGA 3IR5A 2E7ZA 1PYQA 1H5NA 3QQ7A 1OGYA 1WCMA 4QIWA 1KQFA 1PPYA 2VPZA 1Y4ZA 2DMRA 3GTLA 1AA6A 2V3VA 4KDIA 2NAPA 3PLXB 5FTNA 1TWFA 1I3QA 1Q16A 1FDOA 1UHDA 3ML1A 3GTGA 2PJHB 2E2HA 3GTOA 5T5ID 3TM7B 2PMZA 5FTJA 2NYAA 1R9TA 1PT1A 1CZ5A 4AZDA 2WAQA 1KQGA 3GTMA 1DMSA 2JA7A 1CZ4A 1QDNA 2JIQA 5FTLA 2KI8A 4KO8A 2JIRA 3HKZA 2JIPA 5DYGA 1S3SA 1E61A 3IR6A 1TWHA 1SIWA 4D7ZB 2NVXA 3HU2A 1E18A 2R7ZA 4GA5A 5DYIA 1PQHA 1TWCA 5T5MD 2Y0SA 2VPYA 1TWAA 4AOKB 1K83A 1E60A 2WB1A 4CRZA 4AAYA 1R7RA 1Y1VA 1PQFA 1I50A 2NVYA 3CF2A 4AYBA 3QC8A 4CS0A 1PYUB 2C45A 1R27A 1UHEA 2R93A
chains in the Genus database with same CATH superfamily
1H0HA 1WLFA 3HU3A 5GLXA 1G8JA 2HCZX 1IW7D 4L48A 2CW0D 3ENGA 1PT0A 3O5AA 1G8KA 4GA6A 2O5JD 3X2LA 2V45A 3OUGA 4KDLA 3CQZA 2A6HD 2EEOB 2JA6A 1AW8B 1TMOA 3CZBA 4CRYG 2E2IA 4AONB 1VC3B 4KODA 2JIMA 1PQEA 3X2HA 2G6GA 3IR7A 5FTMA 2VUMA 3QWZA 2YU9A 3GTQA 1DMRA 5B6CA 2JA5A 3DMRA 5EPPA 3TIWA 3H0GA 3FKIA 3QQ8A 3GTJA 1FDIA 2B63A 5C1BA 2R92A 1SFOA 5C18A 2JIOA 1QCSA 2R93A 5FTKA 4RV0A 1CR5A 1Y1WA 1YLEA 3HU1A 4C2MA 1E5VA 4KLNA 3M3GA 3GTPA 2IV2X 2VPXA 1Y5IA 2VPWA 4FFTA 3X2OA 3GTKA 1E32A 5GLFA 1EU1A 4DMRA 1TWGA 1BW4A 2A69D 3IR5A 4JS7A 4FG4A 2KQAA 2E7ZA 1PYQA 1N10A 1H5NA 3QQ7A 1OGYA 5GM9A 4JCWA 1WCMA 4AVRA 3SUMA 4QIWA 1KQFA 1PPYA 1BW3A 2VPZA 4FG2A 1Y4ZA 2BH0A 1WC2A 3X2NA 2DMRA 2A68D 3GTLA 1AA6A 1ZC1A 2V3VA 1ZYRD 4KDIA 2NAPA 3PLXB 4NOHA 3SULA 3X2GA 1HD5A 1YNND 5FTNA 2PJJA 1TWFA 1I3QA 1Q16A 1FDOA 1UHDA 3ML1A 3GTGA 2A6ED 2PJHB 3GTOA 2E2HA 5T5ID 3TM7B 2PMZA 5FTJA 2NYAA 2PICA 4JP7A 1R9TA 1PT1A 1CZ5A 4JJOA 2BE5D 4AZDA 2WAQA 1KQGA 3GTMA 1DMSA 1OA7A 1SMYD 5GLYA 2JA7A 1CZ4A 1QDNA 2JIQA 5FTLA 2KI8A 4KO8A 2JIRA 3HKZA 3SUJA 2JIPA 5DYGA 1S3SA 1E61A 3D30A 3IR6A 4ENGA 1L8FA 1TWHA 1SIWA 4D7ZB 2NVXA 1OA9A 3HU2A 1E18A 2R7ZA 4GA5A 3SUKA 2AE0X 2PI8A 3X2KA 5DYIA 3X2PA 1PQHA 1TWCA 3X2IA 4ZM7A 4FERA 5T5MD 2Y0SA 3X2MA 1YNJD 2VPYA 1TWAA 4AOKB 1K83A 1E60A 2G5DA 2WB1A 4CRZA 4AAYA 1R7RA 1Y1VA 2PNWA 1PQFA 5H4UA 1I50A 2NVYA 3CF2A 4AYBA 3QC8A 4CS0A 2GAEA 3X2JA 1PYUB 2C45A 2YUJA 1R27A 4JP6A 1UHEA 2ENGA
chains in the Genus database with same CATH topology
1H0HA 1WLFA 3HU3A 1G8JA 1IW7D 2CW0D 1PT0A 3O5AA 1G8KA 4GA6A 2O5JD 2V45A 3OUGA 4KDLA 3CQZA 2A6HD 2EEOB 2JA6A 1AW8B 1TMOA 3CZBA 4CRYG 2E2IA 4AONB 1VC3B 4KODA 2JIMA 1PQEA 2G6GA 3IR7A 5FTMA 2VUMA 3QWZA 2YU9A 3GTQA 1DMRA 5B6CA 2JA5A 3DMRA 5EPPA 3TIWA 3H0GA 3FKIA 3QQ8A 3GTJA 1FDIA 2B63A 5C1BA 2R92A 1SFOA 5C18A 2JIOA 1QCSA 5FTKA 4RV0A 1CR5A 1Y1WA 1YLEA 3HU1A 4C2MA 1E5VA 4KLNA 3GTPA 2IV2X 2VPXA 1Y5IA 2VPWA 3GTKA 1E32A 5GLFA 1EU1A 4DMRA 1TWGA 2A69D 3IR5A 2E7ZA 1PYQA 1H5NA 3QQ7A 1OGYA 1WCMA 4QIWA 1KQFA 1PPYA 2VPZA 1Y4ZA 2DMRA 2A68D 3GTLA 1AA6A 1ZC1A 2V3VA 1ZYRD 4KDIA 2NAPA 3PLXB 4NOHA 1YNND 5FTNA 2PJJA 1TWFA 1I3QA 1Q16A 1FDOA 1UHDA 3ML1A 3GTGA 2A6ED 2PJHB 3GTOA 2E2HA 5T5ID 3TM7B 2PMZA 5FTJA 2NYAA 2PICA 1R9TA 1PT1A 1CZ5A 2BE5D 4AZDA 2WAQA 1KQGA 3GTMA 1DMSA 1SMYD 2JA7A 1CZ4A 1QDNA 2JIQA 5FTLA 2KI8A 4KO8A 2JIRA 3HKZA 2JIPA 5DYGA 1S3SA 1E61A 3IR6A 1TWHA 1SIWA 4D7ZB 2NVXA 3HU2A 1E18A 2R7ZA 4GA5A 2AE0X 2PI8A 5DYIA 1PQHA 1TWCA 5T5MD 2Y0SA 1YNJD 2VPYA 1TWAA 4AOKB 1K83A 1E60A 2G5DA 2WB1A 4CRZA 4AAYA 1R7RA 1Y1VA 2PNWA 1PQFA 1I50A 2NVYA 3CF2A 4AYBA 3QC8A 4CS0A 2GAEA 1PYUB 2C45A 2YUJA 1R27A 1UHEA 2R93A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1H0H A;  1WLF A;  3HU3 A;  1G8J A;  1IW7 D;  1PT0 A;  3O5A A;  1G8K A;  4GA6 A;  2V45 A;  3OUG A;  4KDL A;  3CQZ A;  2JA6 A;  2EEO B;  1AW8 B;  1TMO A;  4CRY G;  2E2I A;  4AON B;  1VC3 B;  4KOD A;  2JIM A;  1PQE A;  3IR7 A;  5FTM A;  2VUM A;  3QWZ A;  2YU9 A;  3GTQ A;  1DMR A;  5B6C A;  2JA5 A;  3DMR A;  5EPP A;  3TIW A;  3H0G A;  3FKI A;  3QQ8 A;  3GTJ A;  1FDI A;  2B63 A;  5C1B A;  2R92 A;  1SFO A;  5C18 A;  2JIO A;  1QCS A;  5FTK A;  4RV0 A;  1CR5 A;  1Y1W A;  1YLE A;  3HU1 A;  4C2M A;  1E5V A;  4KLN A;  3GTP A;  2IV2 X;  2VPX A;  1Y5I A;  2VPW A;  3GTK A;  1E32 A;  5GLF A;  1EU1 A;  4DMR A;  1TWG A;  3IR5 A;  2E7Z A;  1PYQ A;  1H5N A;  3QQ7 A;  1OGY A;  1WCM A;  4QIW A;  1KQF A;  1PPY A;  2VPZ A;  1Y4Z A;  2DMR A;  3GTL A;  1AA6 A;  2V3V A;  4KDI A;  2NAP A;  3PLX B;  5FTN A;  1TWF A;  1I3Q A;  1Q16 A;  1FDO A;  1UHD A;  3ML1 A;  3GTG A;  2PJH B;  2E2H A;  3GTO A;  5T5I D;  3TM7 B;  2PMZ A;  5FTJ A;  2NYA A;  1R9T A;  1PT1 A;  1CZ5 A;  4AZD A;  2WAQ A;  1KQG A;  3GTM A;  1DMS A;  2JA7 A;  1CZ4 A;  1QDN A;  2JIQ A;  5FTL A;  2KI8 A;  4KO8 A;  2JIR A;  3HKZ A;  2JIP A;  5DYG A;  1S3S A;  1E61 A;  3IR6 A;  1TWH A;  1SIW A;  4D7Z B;  2NVX A;  3HU2 A;  1E18 A;  2R7Z A;  4GA5 A;  5DYI A;  1PQH A;  1TWC A;  5T5M D;  2Y0S A;  2VPY A;  1TWA A;  4AOK B;  1K83 A;  1E60 A;  2WB1 A;  4CRZ A;  4AAY A;  1R7R A;  1Y1V A;  1PQF A;  1I50 A;  2NVY A;  3CF2 A;  4AYB A;  3QC8 A;  4CS0 A;  1PYU B;  2C45 A;  1R27 A;  1UHE A;  2R93 A; 
#chains in the Genus database with same CATH topology
 1H0H A;  1WLF A;  3HU3 A;  5GLX A;  1G8J A;  2HCZ X;  1IW7 D;  4L48 A;  2CW0 D;  3ENG A;  1PT0 A;  3O5A A;  1G8K A;  4GA6 A;  2O5J D;  3X2L A;  2V45 A;  3OUG A;  4KDL A;  3CQZ A;  2A6H D;  2EEO B;  2JA6 A;  1AW8 B;  1TMO A;  3CZB A;  4CRY G;  2E2I A;  4AON B;  1VC3 B;  4KOD A;  2JIM A;  1PQE A;  3X2H A;  2G6G A;  3IR7 A;  5FTM A;  2VUM A;  3QWZ A;  2YU9 A;  3GTQ A;  1DMR A;  5B6C A;  2JA5 A;  3DMR A;  5EPP A;  3TIW A;  3H0G A;  3FKI A;  3QQ8 A;  3GTJ A;  1FDI A;  2B63 A;  5C1B A;  2R92 A;  1SFO A;  5C18 A;  2JIO A;  1QCS A;  2R93 A;  5FTK A;  4RV0 A;  1CR5 A;  1Y1W A;  1YLE A;  3HU1 A;  4C2M A;  1E5V A;  4KLN A;  3M3G A;  3GTP A;  2IV2 X;  2VPX A;  1Y5I A;  2VPW A;  4FFT A;  3X2O A;  3GTK A;  1E32 A;  5GLF A;  1EU1 A;  4DMR A;  1TWG A;  1BW4 A;  2A69 D;  3IR5 A;  4JS7 A;  4FG4 A;  2KQA A;  2E7Z A;  1PYQ A;  1N10 A;  1H5N A;  3QQ7 A;  1OGY A;  5GM9 A;  4JCW A;  1WCM A;  4AVR A;  3SUM A;  4QIW A;  1KQF A;  1PPY A;  1BW3 A;  2VPZ A;  4FG2 A;  1Y4Z A;  2BH0 A;  1WC2 A;  3X2N A;  2DMR A;  2A68 D;  3GTL A;  1AA6 A;  1ZC1 A;  2V3V A;  1ZYR D;  4KDI A;  2NAP A;  3PLX B;  4NOH A;  3SUL A;  3X2G A;  1HD5 A;  1YNN D;  5FTN A;  2PJJ A;  1TWF A;  1I3Q A;  1Q16 A;  1FDO A;  1UHD A;  3ML1 A;  3GTG A;  2A6E D;  2PJH B;  3GTO A;  2E2H A;  5T5I D;  3TM7 B;  2PMZ A;  5FTJ A;  2NYA A;  2PIC A;  4JP7 A;  1R9T A;  1PT1 A;  1CZ5 A;  4JJO A;  2BE5 D;  4AZD A;  2WAQ A;  1KQG A;  3GTM A;  1DMS A;  1OA7 A;  1SMY D;  5GLY A;  2JA7 A;  1CZ4 A;  1QDN A;  2JIQ A;  5FTL A;  2KI8 A;  4KO8 A;  2JIR A;  3HKZ A;  3SUJ A;  2JIP A;  5DYG A;  1S3S A;  1E61 A;  3D30 A;  3IR6 A;  4ENG A;  1L8F A;  1TWH A;  1SIW A;  4D7Z B;  2NVX A;  1OA9 A;  3HU2 A;  1E18 A;  2R7Z A;  4GA5 A;  3SUK A;  2AE0 X;  2PI8 A;  3X2K A;  5DYI A;  3X2P A;  1PQH A;  1TWC A;  3X2I A;  4ZM7 A;  4FER A;  5T5M D;  2Y0S A;  3X2M A;  1YNJ D;  2VPY A;  1TWA A;  4AOK B;  1K83 A;  1E60 A;  2G5D A;  2WB1 A;  4CRZ A;  4AAY A;  1R7R A;  1Y1V A;  2PNW A;  1PQF A;  5H4U A;  1I50 A;  2NVY A;  3CF2 A;  4AYB A;  3QC8 A;  4CS0 A;  2GAE A;  3X2J A;  1PYU B;  2C45 A;  2YUJ A;  1R27 A;  4JP6 A;  1UHE A;  2ENG A; 
#chains in the Genus database with same CATH homology
 1H0H A;  1WLF A;  3HU3 A;  1G8J A;  1IW7 D;  2CW0 D;  1PT0 A;  3O5A A;  1G8K A;  4GA6 A;  2O5J D;  2V45 A;  3OUG A;  4KDL A;  3CQZ A;  2A6H D;  2EEO B;  2JA6 A;  1AW8 B;  1TMO A;  3CZB A;  4CRY G;  2E2I A;  4AON B;  1VC3 B;  4KOD A;  2JIM A;  1PQE A;  2G6G A;  3IR7 A;  5FTM A;  2VUM A;  3QWZ A;  2YU9 A;  3GTQ A;  1DMR A;  5B6C A;  2JA5 A;  3DMR A;  5EPP A;  3TIW A;  3H0G A;  3FKI A;  3QQ8 A;  3GTJ A;  1FDI A;  2B63 A;  5C1B A;  2R92 A;  1SFO A;  5C18 A;  2JIO A;  1QCS A;  5FTK A;  4RV0 A;  1CR5 A;  1Y1W A;  1YLE A;  3HU1 A;  4C2M A;  1E5V A;  4KLN A;  3GTP A;  2IV2 X;  2VPX A;  1Y5I A;  2VPW A;  3GTK A;  1E32 A;  5GLF A;  1EU1 A;  4DMR A;  1TWG A;  2A69 D;  3IR5 A;  2E7Z A;  1PYQ A;  1H5N A;  3QQ7 A;  1OGY A;  1WCM A;  4QIW A;  1KQF A;  1PPY A;  2VPZ A;  1Y4Z A;  2DMR A;  2A68 D;  3GTL A;  1AA6 A;  1ZC1 A;  2V3V A;  1ZYR D;  4KDI A;  2NAP A;  3PLX B;  4NOH A;  1YNN D;  5FTN A;  2PJJ A;  1TWF A;  1I3Q A;  1Q16 A;  1FDO A;  1UHD A;  3ML1 A;  3GTG A;  2A6E D;  2PJH B;  3GTO A;  2E2H A;  5T5I D;  3TM7 B;  2PMZ A;  5FTJ A;  2NYA A;  2PIC A;  1R9T A;  1PT1 A;  1CZ5 A;  2BE5 D;  4AZD A;  2WAQ A;  1KQG A;  3GTM A;  1DMS A;  1SMY D;  2JA7 A;  1CZ4 A;  1QDN A;  2JIQ A;  5FTL A;  2KI8 A;  4KO8 A;  2JIR A;  3HKZ A;  2JIP A;  5DYG A;  1S3S A;  1E61 A;  3IR6 A;  1TWH A;  1SIW A;  4D7Z B;  2NVX A;  3HU2 A;  1E18 A;  2R7Z A;  4GA5 A;  2AE0 X;  2PI8 A;  5DYI A;  1PQH A;  1TWC A;  5T5M D;  2Y0S A;  1YNJ D;  2VPY A;  1TWA A;  4AOK B;  1K83 A;  1E60 A;  2G5D A;  2WB1 A;  4CRZ A;  4AAY A;  1R7R A;  1Y1V A;  2PNW A;  1PQF A;  1I50 A;  2NVY A;  3CF2 A;  4AYB A;  3QC8 A;  4CS0 A;  2GAE A;  1PYU B;  2C45 A;  2YUJ A;  1R27 A;  1UHE A;  2R93 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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