1PT1A

Unprocessed pyruvoyl dependent aspartate decarboxylase with histidine 11 mutated to alanine
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
117
structure length
117
Chain Sequence
GSMIRTMLQGKLARVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Aspartate 1-decarboxylase
publication title Structural constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
source organism Escherichia coli
molecule tags Lyase
total genus 35
structure length 117
sequence length 117
chains with identical sequence B
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-06-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1pt1A00
1VC3B 5GLFA 4RV0A 1G8JA 3H0GA 4GA5A 1FDIA 3GTGA 2JIOA 4CRYG 1R27A 2KI8A 3GTKA 2R92A 2VUMA 2JIRA 4KDLA 1UHEA 3QQ8A 1SFOA 3GTOA 1QDNA 1Y1VA 4KLNA 4AYBA 1E32A 2NVYA 1G8KA 1E61A 4KDIA 4AOKB 5C18A 5C1BA 1QCSA 1WCMA 2YU9A 2JA5A 3GTJA 3DMRA 1I3QA 3GTQA 2E2HA 3IR6A 2WB1A 1TWAA 1S3SA 3FKIA 1Y5IA 5FTMA 3GTLA 4DMRA 5EPPA 4AZDA 1PPYA 2JIMA 3CQZA 1R7RA 1H5NA 1IW7D 2NVXA 1EU1A 2IV2X 1CZ5A 2V45A 4KO8A 1TWCA 2C45A 2B63A 1PQEA 3ML1A 1R9TA 1PQFA 1TWFA 1DMSA 2VPYA 2Y0SA 1PQHA 1TMOA 1AA6A 1Y4ZA 3GTPA 2DMRA 1H0HA 3HU2A 2VPZA 4AAYA 2EEOB 1Y1WA 2NYAA 2VPWA 5FTJA 1KQFA 3IR7A 3GTMA 1YLEA 2JA7A 1E60A 3CF2A 2R93A 1I50A 3OUGA 3HKZA 3O5AA 4D7ZB 1UHDA 4QIWA 4KODA 3QWZA 5DYIA 5B6CA 1CZ4A 5T5ID 1PT0A 2JA6A 1CR5A 1TWGA 1Q16A 1SIWA 2E2IA 5FTLA 5T5MD 1OGYA 2VPXA 2E7ZA 3HU3A 3HU1A 3QQ7A 4AONB 4CS0A 4CRZA 2R7ZA 1K83A 3TM7B 2NAPA 2V3VA 1PYQA 1PT1A 4C2MA 4GA6A 1AW8B 1TWHA 5DYGA 5FTKA 1PYUB 2PJHB 3PLXB 1WLFA 1KQGA 2JIQA 2PMZA 1FDOA 3IR5A 5FTNA 3QC8A 2JIPA 3TIWA 1E5VA 2WAQA 1DMRA 1E18A
chains in the Genus database with same CATH superfamily
1VC3B 5GLFA 3X2OA 1YNJD 4RV0A 1G8JA 2AE0X 3H0GA 1FDIA 4GA5A 2JIOA 3GTGA 3X2IA 4CRYG 1R27A 2KI8A 3GTKA 5GLXA 4JCWA 2R92A 2VUMA 2JIRA 4KDLA 1UHEA 3QQ8A 5GLYA 1ZYRD 1SFOA 1QDNA 3GTOA 1Y1VA 4KLNA 4AYBA 1E32A 2KQAA 2NVYA 1G8KA 5H4UA 1E61A 4KDIA 3X2HA 4AOKB 5C18A 5C1BA 1QCSA 1WCMA 2YU9A 2JA5A 2PNWA 5GM9A 3SUJA 3DMRA 3X2NA 4FG2A 4JP6A 1I3QA 4AVRA 3GTJA 3GTQA 2E2HA 3IR6A 1BW4A 2WB1A 1TWAA 1S3SA 3FKIA 1Y5IA 5FTMA 4JJOA 3GTLA 4DMRA 5EPPA 4AZDA 1HD5A 1PPYA 4FFTA 1ZC1A 2JIMA 4L48A 3X2MA 3CQZA 1R7RA 1H5NA 1IW7D 3X2GA 2NVXA 3ENGA 1EU1A 2IV2X 1CZ5A 3M3GA 2PI8A 2V45A 1SMYD 4KO8A 1TWCA 3X2LA 2C45A 1L8FA 2B63A 1PQEA 2G5DA 3ML1A 2GAEA 1PQFA 1R9TA 1TWFA 1DMSA 2VPYA 2Y0SA 1PQHA 1TMOA 1WC2A 3SUKA 1AA6A 1BW3A 1Y4ZA 3GTPA 2DMRA 1H0HA 3HU2A 2VPZA 4AAYA 2EEOB 1Y1WA 2NYAA 2PJJA 2VPWA 2A69D 4JS7A 5FTJA 1KQFA 4JP7A 3IR7A 3GTMA 1YLEA 1OA7A 3X2KA 4ENGA 2JA7A 1E60A 3CF2A 3CZBA 2R93A 1I50A 3OUGA 3HKZA 1E18A 3O5AA 2PICA 2BH0A 2A68D 2A6HD 2ENGA 4D7ZB 2CW0D 1UHDA 4QIWA 4KODA 3QWZA 5DYIA 5B6CA 1CZ4A 5T5ID 1PT0A 2JA6A 2G6GA 1CR5A 1TWGA 1Q16A 1SIWA 2YUJA 2E2IA 5FTLA 3SULA 5T5MD 1OGYA 2VPXA 2E7ZA 3D30A 3HU3A 3HU1A 4ZM7A 3QQ7A 4AONB 3X2JA 4CS0A 4CRZA 2R7ZA 1K83A 3TM7B 4NOHA 2HCZX 4FG4A 2NAPA 2V3VA 1PYQA 1PT1A 4C2MA 4GA6A 1AW8B 1TWHA 5DYGA 5FTKA 1PYUB 3SUMA 2BE5D 2O5JD 2PJHB 3PLXB 1WLFA 1KQGA 3X2PA 2JIQA 2PMZA 1FDOA 3IR5A 5FTNA 3QC8A 2A6ED 1YNND 2JIPA 4FERA 3TIWA 1E5VA 1OA9A 2WAQA 1DMRA 1N10A
chains in the Genus database with same CATH topology
1VC3B 5GLFA 1YNJD 4RV0A 1G8JA 2AE0X 3H0GA 1FDIA 4GA5A 2JIOA 3GTGA 4CRYG 1R27A 2KI8A 3GTKA 2R92A 2VUMA 2JIRA 4KDLA 1UHEA 3QQ8A 1ZYRD 1SFOA 1QDNA 3GTOA 1Y1VA 4KLNA 4AYBA 1E32A 2NVYA 1G8KA 1E61A 4KDIA 4AOKB 5C18A 5C1BA 1QCSA 1WCMA 2YU9A 2JA5A 2PNWA 3GTJA 3DMRA 1I3QA 3GTQA 2E2HA 3IR6A 2WB1A 1TWAA 1S3SA 3FKIA 1Y5IA 5FTMA 3GTLA 4DMRA 5EPPA 4AZDA 1PPYA 1ZC1A 2JIMA 3CQZA 1R7RA 1H5NA 1IW7D 2NVXA 1EU1A 2IV2X 1CZ5A 2PI8A 2V45A 1SMYD 4KO8A 1TWCA 2C45A 2B63A 1PQEA 2G5DA 3ML1A 2GAEA 1PQFA 1R9TA 1TWFA 1DMSA 2VPYA 2Y0SA 1PQHA 1TMOA 1AA6A 1Y4ZA 3GTPA 2DMRA 1H0HA 3HU2A 2VPZA 4AAYA 2EEOB 1Y1WA 2NYAA 2PJJA 2VPWA 2A69D 5FTJA 1KQFA 3IR7A 3GTMA 1YLEA 2JA7A 1E60A 3CF2A 3CZBA 2R93A 1I50A 3OUGA 3HKZA 3O5AA 2PICA 2A68D 2A6HD 4D7ZB 2CW0D 1UHDA 4QIWA 4KODA 3QWZA 5DYIA 5B6CA 1CZ4A 5T5ID 1PT0A 2JA6A 2G6GA 1CR5A 1TWGA 1Q16A 1SIWA 2YUJA 2E2IA 5FTLA 5T5MD 1OGYA 2VPXA 2E7ZA 3HU3A 3HU1A 3QQ7A 4AONB 4CS0A 4CRZA 2R7ZA 1K83A 3TM7B 4NOHA 2NAPA 2V3VA 1PYQA 1PT1A 4C2MA 4GA6A 1AW8B 1TWHA 5DYGA 5FTKA 1PYUB 2BE5D 2O5JD 2PJHB 3PLXB 1WLFA 1KQGA 2JIQA 2PMZA 1FDOA 3IR5A 5FTNA 3QC8A 2A6ED 1YNND 2JIPA 3TIWA 1E5VA 2WAQA 1DMRA 1E18A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VC3 B;  5GLF A;  4RV0 A;  1G8J A;  3H0G A;  4GA5 A;  1FDI A;  3GTG A;  2JIO A;  4CRY G;  1R27 A;  2KI8 A;  3GTK A;  2R92 A;  2VUM A;  2JIR A;  4KDL A;  1UHE A;  3QQ8 A;  1SFO A;  3GTO A;  1QDN A;  1Y1V A;  4KLN A;  4AYB A;  1E32 A;  2NVY A;  1G8K A;  1E61 A;  4KDI A;  4AOK B;  5C18 A;  5C1B A;  1QCS A;  1WCM A;  2YU9 A;  2JA5 A;  3GTJ A;  3DMR A;  1I3Q A;  3GTQ A;  2E2H A;  3IR6 A;  2WB1 A;  1TWA A;  1S3S A;  3FKI A;  1Y5I A;  5FTM A;  3GTL A;  4DMR A;  5EPP A;  4AZD A;  1PPY A;  2JIM A;  3CQZ A;  1R7R A;  1H5N A;  1IW7 D;  2NVX A;  1EU1 A;  2IV2 X;  1CZ5 A;  2V45 A;  4KO8 A;  1TWC A;  2C45 A;  2B63 A;  1PQE A;  3ML1 A;  1R9T A;  1PQF A;  1TWF A;  1DMS A;  2VPY A;  2Y0S A;  1PQH A;  1TMO A;  1AA6 A;  1Y4Z A;  3GTP A;  2DMR A;  1H0H A;  3HU2 A;  2VPZ A;  4AAY A;  2EEO B;  1Y1W A;  2NYA A;  2VPW A;  5FTJ A;  1KQF A;  3IR7 A;  3GTM A;  1YLE A;  2JA7 A;  1E60 A;  3CF2 A;  2R93 A;  1I50 A;  3OUG A;  3HKZ A;  3O5A A;  4D7Z B;  1UHD A;  4QIW A;  4KOD A;  3QWZ A;  5DYI A;  5B6C A;  1CZ4 A;  5T5I D;  1PT0 A;  2JA6 A;  1CR5 A;  1TWG A;  1Q16 A;  1SIW A;  2E2I A;  5FTL A;  5T5M D;  1OGY A;  2VPX A;  2E7Z A;  3HU3 A;  3HU1 A;  3QQ7 A;  4AON B;  4CS0 A;  4CRZ A;  2R7Z A;  1K83 A;  3TM7 B;  2NAP A;  2V3V A;  1PYQ A;  1PT1 A;  4C2M A;  4GA6 A;  1AW8 B;  1TWH A;  5DYG A;  5FTK A;  1PYU B;  2PJH B;  3PLX B;  1WLF A;  1KQG A;  2JIQ A;  2PMZ A;  1FDO A;  3IR5 A;  5FTN A;  3QC8 A;  2JIP A;  3TIW A;  1E5V A;  2WAQ A;  1DMR A;  1E18 A; 
#chains in the Genus database with same CATH topology
 1VC3 B;  5GLF A;  3X2O A;  1YNJ D;  4RV0 A;  1G8J A;  2AE0 X;  3H0G A;  1FDI A;  4GA5 A;  2JIO A;  3GTG A;  3X2I A;  4CRY G;  1R27 A;  2KI8 A;  3GTK A;  5GLX A;  4JCW A;  2R92 A;  2VUM A;  2JIR A;  4KDL A;  1UHE A;  3QQ8 A;  5GLY A;  1ZYR D;  1SFO A;  1QDN A;  3GTO A;  1Y1V A;  4KLN A;  4AYB A;  1E32 A;  2KQA A;  2NVY A;  1G8K A;  5H4U A;  1E61 A;  4KDI A;  3X2H A;  4AOK B;  5C18 A;  5C1B A;  1QCS A;  1WCM A;  2YU9 A;  2JA5 A;  2PNW A;  5GM9 A;  3SUJ A;  3DMR A;  3X2N A;  4FG2 A;  4JP6 A;  1I3Q A;  4AVR A;  3GTJ A;  3GTQ A;  2E2H A;  3IR6 A;  1BW4 A;  2WB1 A;  1TWA A;  1S3S A;  3FKI A;  1Y5I A;  5FTM A;  4JJO A;  3GTL A;  4DMR A;  5EPP A;  4AZD A;  1HD5 A;  1PPY A;  4FFT A;  1ZC1 A;  2JIM A;  4L48 A;  3X2M A;  3CQZ A;  1R7R A;  1H5N A;  1IW7 D;  3X2G A;  2NVX A;  3ENG A;  1EU1 A;  2IV2 X;  1CZ5 A;  3M3G A;  2PI8 A;  2V45 A;  1SMY D;  4KO8 A;  1TWC A;  3X2L A;  2C45 A;  1L8F A;  2B63 A;  1PQE A;  2G5D A;  3ML1 A;  2GAE A;  1PQF A;  1R9T A;  1TWF A;  1DMS A;  2VPY A;  2Y0S A;  1PQH A;  1TMO A;  1WC2 A;  3SUK A;  1AA6 A;  1BW3 A;  1Y4Z A;  3GTP A;  2DMR A;  1H0H A;  3HU2 A;  2VPZ A;  4AAY A;  2EEO B;  1Y1W A;  2NYA A;  2PJJ A;  2VPW A;  2A69 D;  4JS7 A;  5FTJ A;  1KQF A;  4JP7 A;  3IR7 A;  3GTM A;  1YLE A;  1OA7 A;  3X2K A;  4ENG A;  2JA7 A;  1E60 A;  3CF2 A;  3CZB A;  2R93 A;  1I50 A;  3OUG A;  3HKZ A;  1E18 A;  3O5A A;  2PIC A;  2BH0 A;  2A68 D;  2A6H D;  2ENG A;  4D7Z B;  2CW0 D;  1UHD A;  4QIW A;  4KOD A;  3QWZ A;  5DYI A;  5B6C A;  1CZ4 A;  5T5I D;  1PT0 A;  2JA6 A;  2G6G A;  1CR5 A;  1TWG A;  1Q16 A;  1SIW A;  2YUJ A;  2E2I A;  5FTL A;  3SUL A;  5T5M D;  1OGY A;  2VPX A;  2E7Z A;  3D30 A;  3HU3 A;  3HU1 A;  4ZM7 A;  3QQ7 A;  4AON B;  3X2J A;  4CS0 A;  4CRZ A;  2R7Z A;  1K83 A;  3TM7 B;  4NOH A;  2HCZ X;  4FG4 A;  2NAP A;  2V3V A;  1PYQ A;  1PT1 A;  4C2M A;  4GA6 A;  1AW8 B;  1TWH A;  5DYG A;  5FTK A;  1PYU B;  3SUM A;  2BE5 D;  2O5J D;  2PJH B;  3PLX B;  1WLF A;  1KQG A;  3X2P A;  2JIQ A;  2PMZ A;  1FDO A;  3IR5 A;  5FTN A;  3QC8 A;  2A6E D;  1YNN D;  2JIP A;  4FER A;  3TIW A;  1E5V A;  1OA9 A;  2WAQ A;  1DMR A;  1N10 A; 
#chains in the Genus database with same CATH homology
 1VC3 B;  5GLF A;  1YNJ D;  4RV0 A;  1G8J A;  2AE0 X;  3H0G A;  1FDI A;  4GA5 A;  2JIO A;  3GTG A;  4CRY G;  1R27 A;  2KI8 A;  3GTK A;  2R92 A;  2VUM A;  2JIR A;  4KDL A;  1UHE A;  3QQ8 A;  1ZYR D;  1SFO A;  1QDN A;  3GTO A;  1Y1V A;  4KLN A;  4AYB A;  1E32 A;  2NVY A;  1G8K A;  1E61 A;  4KDI A;  4AOK B;  5C18 A;  5C1B A;  1QCS A;  1WCM A;  2YU9 A;  2JA5 A;  2PNW A;  3GTJ A;  3DMR A;  1I3Q A;  3GTQ A;  2E2H A;  3IR6 A;  2WB1 A;  1TWA A;  1S3S A;  3FKI A;  1Y5I A;  5FTM A;  3GTL A;  4DMR A;  5EPP A;  4AZD A;  1PPY A;  1ZC1 A;  2JIM A;  3CQZ A;  1R7R A;  1H5N A;  1IW7 D;  2NVX A;  1EU1 A;  2IV2 X;  1CZ5 A;  2PI8 A;  2V45 A;  1SMY D;  4KO8 A;  1TWC A;  2C45 A;  2B63 A;  1PQE A;  2G5D A;  3ML1 A;  2GAE A;  1PQF A;  1R9T A;  1TWF A;  1DMS A;  2VPY A;  2Y0S A;  1PQH A;  1TMO A;  1AA6 A;  1Y4Z A;  3GTP A;  2DMR A;  1H0H A;  3HU2 A;  2VPZ A;  4AAY A;  2EEO B;  1Y1W A;  2NYA A;  2PJJ A;  2VPW A;  2A69 D;  5FTJ A;  1KQF A;  3IR7 A;  3GTM A;  1YLE A;  2JA7 A;  1E60 A;  3CF2 A;  3CZB A;  2R93 A;  1I50 A;  3OUG A;  3HKZ A;  3O5A A;  2PIC A;  2A68 D;  2A6H D;  4D7Z B;  2CW0 D;  1UHD A;  4QIW A;  4KOD A;  3QWZ A;  5DYI A;  5B6C A;  1CZ4 A;  5T5I D;  1PT0 A;  2JA6 A;  2G6G A;  1CR5 A;  1TWG A;  1Q16 A;  1SIW A;  2YUJ A;  2E2I A;  5FTL A;  5T5M D;  1OGY A;  2VPX A;  2E7Z A;  3HU3 A;  3HU1 A;  3QQ7 A;  4AON B;  4CS0 A;  4CRZ A;  2R7Z A;  1K83 A;  3TM7 B;  4NOH A;  2NAP A;  2V3V A;  1PYQ A;  1PT1 A;  4C2M A;  4GA6 A;  1AW8 B;  1TWH A;  5DYG A;  5FTK A;  1PYU B;  2BE5 D;  2O5J D;  2PJH B;  3PLX B;  1WLF A;  1KQG A;  2JIQ A;  2PMZ A;  1FDO A;  3IR5 A;  5FTN A;  3QC8 A;  2A6E D;  1YNN D;  2JIP A;  3TIW A;  1E5V A;  2WAQ A;  1DMR A;  1E18 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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