4AZDA

T57v mutant of aspartate decarboxylase
Total Genus 35
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
122
structure length
122
Chain Sequence
b'VPRGSMIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSVYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRT'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords ASPARTATE 1-DECARBOXYLASE
molecule tags Lyase
source organism Escherichia coli
publication title Threonine 57 is Required for the Post-Translational Activation of Escherichia Coli Aspartate Alpha-Decarboxylase
pubmed doi rcsb
total genus 35
structure length 122
sequence length 122
chains with identical sequence B
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2012-06-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 4azdA00
1E32A 4QIWA 1R7RA 5DYIA 3PLXB 1DMRA 1S3SA 1R27A 3GTLA 4DMRA 2VPZA 1PT1A 2R93A 2R7ZA 3CQZA 1PQHA 2VPYA 4GA5A 5GLFA 1AW8B 2E7ZA 3TM7B 5DYGA 2JIQA 4AAYA 1PT0A 3GTQA 4KO8A 3GTOA 5B6CA 1PYQA 2NVXA 5T5ID 1IW7D 1Y5IA 1G8JA 3H0GA 3DMRA 2VUMA 3QQ7A 1PQFA 3QWZA 3FKIA 4RV0A 5EPPA 1E5VA 2JIMA 1WCMA 1SIWA 2DMRA 1SFOA 2V3VA 1WLFA 3IR6A 4GA6A 5FTNA 1FDIA 2KI8A 2PMZA 4KDLA 2JIRA 1CR5A 2VPXA 2R92A 1AA6A 1Q16A 3HU1A 4CRYG 1R9TA 1VC3B 1I50A 1CZ4A 3GTPA 4AYBA 2V45A 2B63A 4KODA 3OUGA 4AONB 1FDOA 1H0HA 1E60A 2YU9A 1TWGA 3HKZA 1TWCA 2PJHB 1EU1A 3HU2A 3HU3A 5C18A 1YLEA 2JIPA 2JIOA 2WAQA 2NVYA 2WB1A 1KQGA 1KQFA 4AOKB 2EEOB 1QCSA 2IV2X 3GTGA 3IR5A 3TIWA 1PYUB 5FTMA 3O5AA 4CRZA 1TMOA 1H5NA 3ML1A 1Y1VA 1Y4ZA 3CF2A 1UHEA 2E2HA 1CZ5A 3GTMA 4KLNA 1Y1WA 3GTJA 2JA6A 1TWAA 1PQEA 2NYAA 2VPWA 1G8KA 3QQ8A 4D7ZB 1K83A 2JA7A 5FTKA 4C2MA 5T5MD 1TWHA 5FTJA 4AZDA 1TWFA 1DMSA 1PPYA 2Y0SA 1QDNA 5FTLA 2E2IA 3GTKA 3IR7A 2C45A 4KDIA 5C1BA 4CS0A 1E61A 2JA5A 3QC8A 1OGYA 2NAPA 1E18A 1I3QA 1UHDA
chains in the Genus database with same CATH superfamily
1E32A 4QIWA 4FERA 1R7RA 2PNWA 5DYIA 3PLXB 1DMRA 1S3SA 1R27A 3GTLA 2KQAA 3X2NA 1N10A 4JP7A 1HD5A 4DMRA 2VPZA 3X2HA 1WC2A 5GLXA 1PT1A 3X2IA 2G5DA 3ENGA 2R93A 2R7ZA 3CQZA 1PQHA 2VPYA 4GA5A 3X2OA 3SUKA 4FFTA 5GLFA 1AW8B 2GAEA 4ENGA 2E7ZA 3TM7B 5DYGA 2JIQA 4AAYA 1PT0A 1BW3A 3GTQA 4L48A 2A6HD 4KO8A 5GLYA 3GTOA 2ENGA 5B6CA 1PYQA 2NVXA 5T5ID 4JP6A 1IW7D 1Y5IA 1G8JA 3H0GA 3DMRA 2VUMA 3QQ7A 1PQFA 3D30A 3QWZA 1YNND 3FKIA 1OA7A 4RV0A 1E5VA 2JIMA 5EPPA 1WCMA 2HCZX 1SIWA 2DMRA 1SFOA 2V3VA 3SULA 1WLFA 3IR6A 3CZBA 4GA6A 5FTNA 1FDIA 2KI8A 2YUJA 4NOHA 2PMZA 4KDLA 2JIRA 1CR5A 4FG2A 2VPXA 2R92A 2PICA 1Q16A 1AA6A 3HU1A 4CRYG 1R9TA 1VC3B 1I50A 1CZ4A 4FG4A 3GTPA 4AYBA 2V45A 2B63A 4KODA 3OUGA 4AONB 1FDOA 1YNJD 1H0HA 1E60A 2YU9A 4ZM7A 1TWGA 3HKZA 4AVRA 1TWCA 3X2PA 3M3GA 2PJHB 3X2GA 1EU1A 1ZYRD 3HU2A 2CW0D 3HU3A 4JJOA 1YLEA 5C18A 2JIPA 2JIOA 2WAQA 2NVYA 2WB1A 1KQGA 1KQFA 2BE5D 4JS7A 2EEOB 4AOKB 1QCSA 2IV2X 3GTGA 3IR5A 3TIWA 1PYUB 5FTMA 3O5AA 1BW4A 4CRZA 1TMOA 5H4UA 2G6GA 2O5JD 1H5NA 1Y1VA 3ML1A 1Y4ZA 3CF2A 1SMYD 1UHEA 2E2HA 1CZ5A 5GM9A 3GTMA 4KLNA 1Y1WA 3GTJA 2JA6A 2AE0X 1TWAA 1PQEA 2NYAA 2VPWA 1G8KA 2A6ED 3QQ8A 3SUJA 4D7ZB 1K83A 2JA7A 2A68D 5FTKA 4C2MA 5T5MD 1TWHA 5FTJA 4AZDA 4JCWA 3X2JA 1TWFA 1DMSA 3X2MA 1PPYA 2Y0SA 1QDNA 5FTLA 2BH0A 2E2IA 1L8FA 1OA9A 3X2KA 3GTKA 2PJJA 3X2LA 3IR7A 2C45A 4KDIA 5C1BA 2A69D 1ZC1A 4CS0A 1E61A 2JA5A 3SUMA 3QC8A 2PI8A 1OGYA 2NAPA 1E18A 1I3QA 1UHDA
chains in the Genus database with same CATH topology
1E32A 4QIWA 1R7RA 2PNWA 5DYIA 3PLXB 1DMRA 1S3SA 1R27A 3GTLA 4DMRA 2VPZA 1PT1A 2G5DA 2R93A 2R7ZA 3CQZA 1PQHA 2VPYA 4GA5A 5GLFA 1AW8B 2GAEA 2E7ZA 3TM7B 5DYGA 2JIQA 4AAYA 1PT0A 3GTQA 2A6HD 4KO8A 3GTOA 5B6CA 1PYQA 2NVXA 5T5ID 1IW7D 1Y5IA 1G8JA 3H0GA 3DMRA 2VUMA 3QQ7A 1PQFA 3QWZA 1YNND 3FKIA 4RV0A 5EPPA 1E5VA 2JIMA 1WCMA 1SIWA 2DMRA 1SFOA 2V3VA 1WLFA 3IR6A 3CZBA 4GA6A 5FTNA 1FDIA 2KI8A 2YUJA 4NOHA 2PMZA 4KDLA 2JIRA 1CR5A 2VPXA 2R92A 2PICA 1Q16A 1AA6A 3HU1A 4CRYG 1R9TA 1VC3B 1I50A 1CZ4A 3GTPA 4AYBA 2V45A 2B63A 4KODA 3OUGA 4AONB 1FDOA 1YNJD 1H0HA 1E60A 2YU9A 1TWGA 3HKZA 1TWCA 2PJHB 1EU1A 1ZYRD 3HU2A 2CW0D 3HU3A 5C18A 1YLEA 2JIPA 2JIOA 2WAQA 2NVYA 2WB1A 1KQGA 1KQFA 2BE5D 4AOKB 2EEOB 1QCSA 2IV2X 3GTGA 3IR5A 3TIWA 1PYUB 5FTMA 3O5AA 4CRZA 1TMOA 2G6GA 2O5JD 1H5NA 1Y1VA 3ML1A 1Y4ZA 3CF2A 1SMYD 1UHEA 2E2HA 1CZ5A 3GTMA 4KLNA 1Y1WA 3GTJA 2JA6A 2AE0X 1TWAA 1PQEA 2NYAA 2VPWA 1G8KA 2A6ED 3QQ8A 4D7ZB 1K83A 2JA7A 2A68D 5FTKA 4C2MA 5T5MD 1TWHA 5FTJA 4AZDA 1TWFA 1DMSA 1PPYA 2Y0SA 1QDNA 5FTLA 2E2IA 3GTKA 2PJJA 3IR7A 2C45A 4KDIA 5C1BA 2A69D 1ZC1A 4CS0A 1E61A 2JA5A 3QC8A 2PI8A 1OGYA 2NAPA 1E18A 1I3QA 1UHDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E32 A;  4QIW A;  1R7R A;  5DYI A;  3PLX B;  1DMR A;  1S3S A;  1R27 A;  3GTL A;  4DMR A;  2VPZ A;  1PT1 A;  2R93 A;  2R7Z A;  3CQZ A;  1PQH A;  2VPY A;  4GA5 A;  5GLF A;  1AW8 B;  2E7Z A;  3TM7 B;  5DYG A;  2JIQ A;  4AAY A;  1PT0 A;  3GTQ A;  4KO8 A;  3GTO A;  5B6C A;  1PYQ A;  2NVX A;  5T5I D;  1IW7 D;  1Y5I A;  1G8J A;  3H0G A;  3DMR A;  2VUM A;  3QQ7 A;  1PQF A;  3QWZ A;  3FKI A;  4RV0 A;  5EPP A;  1E5V A;  2JIM A;  1WCM A;  1SIW A;  2DMR A;  1SFO A;  2V3V A;  1WLF A;  3IR6 A;  4GA6 A;  5FTN A;  1FDI A;  2KI8 A;  2PMZ A;  4KDL A;  2JIR A;  1CR5 A;  2VPX A;  2R92 A;  1AA6 A;  1Q16 A;  3HU1 A;  4CRY G;  1R9T A;  1VC3 B;  1I50 A;  1CZ4 A;  3GTP A;  4AYB A;  2V45 A;  2B63 A;  4KOD A;  3OUG A;  4AON B;  1FDO A;  1H0H A;  1E60 A;  2YU9 A;  1TWG A;  3HKZ A;  1TWC A;  2PJH B;  1EU1 A;  3HU2 A;  3HU3 A;  5C18 A;  1YLE A;  2JIP A;  2JIO A;  2WAQ A;  2NVY A;  2WB1 A;  1KQG A;  1KQF A;  4AOK B;  2EEO B;  1QCS A;  2IV2 X;  3GTG A;  3IR5 A;  3TIW A;  1PYU B;  5FTM A;  3O5A A;  4CRZ A;  1TMO A;  1H5N A;  3ML1 A;  1Y1V A;  1Y4Z A;  3CF2 A;  1UHE A;  2E2H A;  1CZ5 A;  3GTM A;  4KLN A;  1Y1W A;  3GTJ A;  2JA6 A;  1TWA A;  1PQE A;  2NYA A;  2VPW A;  1G8K A;  3QQ8 A;  4D7Z B;  1K83 A;  2JA7 A;  5FTK A;  4C2M A;  5T5M D;  1TWH A;  5FTJ A;  4AZD A;  1TWF A;  1DMS A;  1PPY A;  2Y0S A;  1QDN A;  5FTL A;  2E2I A;  3GTK A;  3IR7 A;  2C45 A;  4KDI A;  5C1B A;  4CS0 A;  1E61 A;  2JA5 A;  3QC8 A;  1OGY A;  2NAP A;  1E18 A;  1I3Q A;  1UHD A; 
#chains in the Genus database with same CATH topology
 1E32 A;  4QIW A;  4FER A;  1R7R A;  2PNW A;  5DYI A;  3PLX B;  1DMR A;  1S3S A;  1R27 A;  3GTL A;  2KQA A;  3X2N A;  1N10 A;  4JP7 A;  1HD5 A;  4DMR A;  2VPZ A;  3X2H A;  1WC2 A;  5GLX A;  1PT1 A;  3X2I A;  2G5D A;  3ENG A;  2R93 A;  2R7Z A;  3CQZ A;  1PQH A;  2VPY A;  4GA5 A;  3X2O A;  3SUK A;  4FFT A;  5GLF A;  1AW8 B;  2GAE A;  4ENG A;  2E7Z A;  3TM7 B;  5DYG A;  2JIQ A;  4AAY A;  1PT0 A;  1BW3 A;  3GTQ A;  4L48 A;  2A6H D;  4KO8 A;  5GLY A;  3GTO A;  2ENG A;  5B6C A;  1PYQ A;  2NVX A;  5T5I D;  4JP6 A;  1IW7 D;  1Y5I A;  1G8J A;  3H0G A;  3DMR A;  2VUM A;  3QQ7 A;  1PQF A;  3D30 A;  3QWZ A;  1YNN D;  3FKI A;  1OA7 A;  4RV0 A;  1E5V A;  2JIM A;  5EPP A;  1WCM A;  2HCZ X;  1SIW A;  2DMR A;  1SFO A;  2V3V A;  3SUL A;  1WLF A;  3IR6 A;  3CZB A;  4GA6 A;  5FTN A;  1FDI A;  2KI8 A;  2YUJ A;  4NOH A;  2PMZ A;  4KDL A;  2JIR A;  1CR5 A;  4FG2 A;  2VPX A;  2R92 A;  2PIC A;  1Q16 A;  1AA6 A;  3HU1 A;  4CRY G;  1R9T A;  1VC3 B;  1I50 A;  1CZ4 A;  4FG4 A;  3GTP A;  4AYB A;  2V45 A;  2B63 A;  4KOD A;  3OUG A;  4AON B;  1FDO A;  1YNJ D;  1H0H A;  1E60 A;  2YU9 A;  4ZM7 A;  1TWG A;  3HKZ A;  4AVR A;  1TWC A;  3X2P A;  3M3G A;  2PJH B;  3X2G A;  1EU1 A;  1ZYR D;  3HU2 A;  2CW0 D;  3HU3 A;  4JJO A;  1YLE A;  5C18 A;  2JIP A;  2JIO A;  2WAQ A;  2NVY A;  2WB1 A;  1KQG A;  1KQF A;  2BE5 D;  4JS7 A;  2EEO B;  4AOK B;  1QCS A;  2IV2 X;  3GTG A;  3IR5 A;  3TIW A;  1PYU B;  5FTM A;  3O5A A;  1BW4 A;  4CRZ A;  1TMO A;  5H4U A;  2G6G A;  2O5J D;  1H5N A;  1Y1V A;  3ML1 A;  1Y4Z A;  3CF2 A;  1SMY D;  1UHE A;  2E2H A;  1CZ5 A;  5GM9 A;  3GTM A;  4KLN A;  1Y1W A;  3GTJ A;  2JA6 A;  2AE0 X;  1TWA A;  1PQE A;  2NYA A;  2VPW A;  1G8K A;  2A6E D;  3QQ8 A;  3SUJ A;  4D7Z B;  1K83 A;  2JA7 A;  2A68 D;  5FTK A;  4C2M A;  5T5M D;  1TWH A;  5FTJ A;  4AZD A;  4JCW A;  3X2J A;  1TWF A;  1DMS A;  3X2M A;  1PPY A;  2Y0S A;  1QDN A;  5FTL A;  2BH0 A;  2E2I A;  1L8F A;  1OA9 A;  3X2K A;  3GTK A;  2PJJ A;  3X2L A;  3IR7 A;  2C45 A;  4KDI A;  5C1B A;  2A69 D;  1ZC1 A;  4CS0 A;  1E61 A;  2JA5 A;  3SUM A;  3QC8 A;  2PI8 A;  1OGY A;  2NAP A;  1E18 A;  1I3Q A;  1UHD A; 
#chains in the Genus database with same CATH homology
 1E32 A;  4QIW A;  1R7R A;  2PNW A;  5DYI A;  3PLX B;  1DMR A;  1S3S A;  1R27 A;  3GTL A;  4DMR A;  2VPZ A;  1PT1 A;  2G5D A;  2R93 A;  2R7Z A;  3CQZ A;  1PQH A;  2VPY A;  4GA5 A;  5GLF A;  1AW8 B;  2GAE A;  2E7Z A;  3TM7 B;  5DYG A;  2JIQ A;  4AAY A;  1PT0 A;  3GTQ A;  2A6H D;  4KO8 A;  3GTO A;  5B6C A;  1PYQ A;  2NVX A;  5T5I D;  1IW7 D;  1Y5I A;  1G8J A;  3H0G A;  3DMR A;  2VUM A;  3QQ7 A;  1PQF A;  3QWZ A;  1YNN D;  3FKI A;  4RV0 A;  5EPP A;  1E5V A;  2JIM A;  1WCM A;  1SIW A;  2DMR A;  1SFO A;  2V3V A;  1WLF A;  3IR6 A;  3CZB A;  4GA6 A;  5FTN A;  1FDI A;  2KI8 A;  2YUJ A;  4NOH A;  2PMZ A;  4KDL A;  2JIR A;  1CR5 A;  2VPX A;  2R92 A;  2PIC A;  1Q16 A;  1AA6 A;  3HU1 A;  4CRY G;  1R9T A;  1VC3 B;  1I50 A;  1CZ4 A;  3GTP A;  4AYB A;  2V45 A;  2B63 A;  4KOD A;  3OUG A;  4AON B;  1FDO A;  1YNJ D;  1H0H A;  1E60 A;  2YU9 A;  1TWG A;  3HKZ A;  1TWC A;  2PJH B;  1EU1 A;  1ZYR D;  3HU2 A;  2CW0 D;  3HU3 A;  5C18 A;  1YLE A;  2JIP A;  2JIO A;  2WAQ A;  2NVY A;  2WB1 A;  1KQG A;  1KQF A;  2BE5 D;  4AOK B;  2EEO B;  1QCS A;  2IV2 X;  3GTG A;  3IR5 A;  3TIW A;  1PYU B;  5FTM A;  3O5A A;  4CRZ A;  1TMO A;  2G6G A;  2O5J D;  1H5N A;  1Y1V A;  3ML1 A;  1Y4Z A;  3CF2 A;  1SMY D;  1UHE A;  2E2H A;  1CZ5 A;  3GTM A;  4KLN A;  1Y1W A;  3GTJ A;  2JA6 A;  2AE0 X;  1TWA A;  1PQE A;  2NYA A;  2VPW A;  1G8K A;  2A6E D;  3QQ8 A;  4D7Z B;  1K83 A;  2JA7 A;  2A68 D;  5FTK A;  4C2M A;  5T5M D;  1TWH A;  5FTJ A;  4AZD A;  1TWF A;  1DMS A;  1PPY A;  2Y0S A;  1QDN A;  5FTL A;  2E2I A;  3GTK A;  2PJJ A;  3IR7 A;  2C45 A;  4KDI A;  5C1B A;  2A69 D;  1ZC1 A;  4CS0 A;  1E61 A;  2JA5 A;  3QC8 A;  2PI8 A;  1OGY A;  2NAP A;  1E18 A;  1I3Q A;  1UHD A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...