4AZDA

T57v mutant of aspartate decarboxylase
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
122
structure length
122
Chain Sequence
VPRGSMIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSVYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords ASPARTATE 1-DECARBOXYLASE
publication title Threonine 57 is Required for the Post-Translational Activation of Escherichia Coli Aspartate Alpha-Decarboxylase
pubmed doi rcsb
source organism Escherichia coli
total genus 35
structure length 122
sequence length 122
chains with identical sequence B
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2012-06-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 4azdA00
1KQGA 3IR7A 3TIWA 1TWAA 1E32A 1PT1A 2JIRA 2NAPA 5B6CA 3CF2A 2JA5A 2VPYA 4CRYG 3HU1A 3HU2A 1Y5IA 2NVYA 1PYUB 1UHDA 3QWZA 1I50A 1R7RA 5C1BA 5T5MD 2WAQA 1CZ4A 2NVXA 5FTKA 3GTLA 3FKIA 2EEOB 1CZ5A 1H0HA 4RV0A 2V45A 5FTNA 1Y1WA 4C2MA 5DYGA 4AONB 3IR5A 1PT0A 1E61A 3HKZA 2R93A 5GLFA 1QCSA 4CS0A 1FDOA 4KO8A 2PMZA 3QC8A 3TM7B 2JIPA 1K83A 5FTMA 1S3SA 1TWFA 2VPZA 2JIQA 3GTGA 1G8KA 1DMRA 1R9TA 1PQHA 3QQ8A 3GTKA 4GA6A 2YU9A 3CQZA 2VUMA 1TWCA 4CRZA 4AYBA 4QIWA 2Y0SA 4AZDA 2V3VA 1E60A 1E18A 2JIOA 1R27A 1WLFA 1I3QA 4GA5A 3GTQA 4KDLA 1E5VA 1KQFA 5EPPA 4AAYA 5FTJA 4KLNA 2WB1A 1TMOA 3DMRA 1OGYA 2E7ZA 5FTLA 3GTOA 2R92A 2IV2X 1VC3B 1FDIA 4D7ZB 2VPXA 5C18A 3GTJA 5T5ID 1TWHA 2JIMA 5DYIA 1Y4ZA 3GTPA 1G8JA 2NYAA 3QQ7A 1AA6A 1PYQA 2KI8A 1UHEA 3O5AA 2VPWA 1YLEA 4DMRA 1EU1A 2JA6A 1PQFA 1SFOA 1TWGA 3GTMA 1AW8B 2PJHB 4AOKB 1WCMA 1PQEA 2R7ZA 1CR5A 3H0GA 2E2IA 2E2HA 2B63A 3ML1A 3OUGA 3IR6A 4KODA 1SIWA 1QDNA 2DMRA 3PLXB 1PPYA 1IW7D 4KDIA 2C45A 1Y1VA 3HU3A 1H5NA 1Q16A 1DMSA 2JA7A
chains in the Genus database with same CATH superfamily
3X2JA 1KQGA 3IR7A 3TIWA 1TWAA 4JP6A 1E32A 1PT1A 2JIRA 2NAPA 4ZM7A 3CF2A 5B6CA 1ZYRD 2JA5A 2VPYA 2GAEA 4CRYG 3HU1A 2BE5D 3HU2A 1Y5IA 2NVYA 1PYUB 1UHDA 2YUJA 3QWZA 3SULA 2CW0D 2KQAA 5GLYA 1I50A 1R7RA 5C1BA 5T5MD 3D30A 2WAQA 1CZ4A 3SUMA 3SUJA 4JCWA 5GM9A 5FTKA 2A69D 3GTLA 2NVXA 3FKIA 2EEOB 3X2PA 1CZ5A 1H0HA 4RV0A 3X2IA 2V45A 5FTNA 1Y1WA 3ENGA 4C2MA 5DYGA 2G5DA 4AONB 3IR5A 1PT0A 2PI8A 1E61A 4FFTA 3HKZA 2R93A 1OA9A 5GLFA 1QCSA 4CS0A 1FDOA 4FG2A 2PMZA 3QC8A 4KO8A 4L48A 2JIPA 3TM7B 1K83A 5FTMA 1S3SA 1TWFA 2A6ED 2VPZA 3X2HA 2JIQA 3GTGA 1G8KA 1DMRA 4AVRA 1YNND 1R9TA 1PQHA 3QQ8A 3GTKA 4GA6A 2YU9A 3CQZA 2VUMA 1TWCA 4CRZA 4JP7A 4AYBA 4QIWA 2Y0SA 4AZDA 3X2OA 2V3VA 1BW3A 1E60A 1E18A 2JIOA 1R27A 1WLFA 2A6HD 1I3QA 4GA5A 1N10A 3GTQA 2G6GA 4KDLA 1E5VA 1KQFA 2HCZX 4JJOA 5EPPA 4AAYA 5FTJA 2PICA 2WB1A 4KLNA 1TMOA 3DMRA 1OGYA 2E7ZA 5FTLA 3GTOA 1L8FA 2R92A 2IV2X 1HD5A 1VC3B 1OA7A 2ENGA 1FDIA 5GLXA 2O5JD 1ZC1A 4D7ZB 2VPXA 5C18A 3GTJA 2PNWA 5T5ID 1TWHA 2JIMA 3X2MA 5DYIA 1SMYD 1Y4ZA 3GTPA 1G8JA 2NYAA 3QQ7A 1AA6A 1BW4A 1PYQA 4NOHA 2KI8A 1UHEA 3O5AA 2VPWA 1YLEA 1YNJD 1WC2A 1EU1A 3X2NA 4DMRA 2JA6A 1PQFA 1SFOA 4FG4A 1TWGA 3X2LA 4ENGA 2BH0A 3GTMA 5H4UA 3X2GA 2AE0X 1AW8B 2PJHB 4AOKB 1WCMA 1PQEA 2R7ZA 1CR5A 3X2KA 3H0GA 2E2IA 2E2HA 2B63A 2A68D 3ML1A 2PJJA 3IR6A 3OUGA 3CZBA 4KODA 1SIWA 1QDNA 2DMRA 3SUKA 3PLXB 1PPYA 1IW7D 4KDIA 4JS7A 3M3GA 2C45A 1Y1VA 3HU3A 4FERA 1H5NA 1Q16A 1DMSA 2JA7A
chains in the Genus database with same CATH topology
1KQGA 3IR7A 3TIWA 1TWAA 1E32A 1PT1A 2JIRA 2NAPA 5B6CA 3CF2A 2JA5A 1ZYRD 2VPYA 2GAEA 4CRYG 3HU1A 2BE5D 3HU2A 1Y5IA 2NVYA 1PYUB 1UHDA 2YUJA 3QWZA 2CW0D 1I50A 1R7RA 5C1BA 5T5MD 2WAQA 1CZ4A 2NVXA 5FTKA 2A69D 3GTLA 3FKIA 2EEOB 1CZ5A 1H0HA 4RV0A 2V45A 5FTNA 1Y1WA 4C2MA 5DYGA 2G5DA 4AONB 3IR5A 1PT0A 2PI8A 1E61A 3HKZA 2R93A 5GLFA 1QCSA 4CS0A 1FDOA 4KO8A 2PMZA 3QC8A 3TM7B 2JIPA 1K83A 5FTMA 1S3SA 1TWFA 2A6ED 2VPZA 2JIQA 3GTGA 1G8KA 1DMRA 1YNND 1R9TA 1PQHA 3QQ8A 3GTKA 4GA6A 2YU9A 3CQZA 2VUMA 1TWCA 4CRZA 4AYBA 4QIWA 2Y0SA 4AZDA 2V3VA 1E60A 1E18A 2JIOA 1R27A 1WLFA 2A6HD 1I3QA 4GA5A 3GTQA 2G6GA 4KDLA 1E5VA 1KQFA 5EPPA 4AAYA 5FTJA 2PICA 2WB1A 4KLNA 1TMOA 3DMRA 1OGYA 2E7ZA 5FTLA 3GTOA 2R92A 2IV2X 1VC3B 1FDIA 2O5JD 1ZC1A 4D7ZB 2VPXA 5C18A 3GTJA 2PNWA 5T5ID 1TWHA 2JIMA 5DYIA 1SMYD 1Y4ZA 3GTPA 1G8JA 2NYAA 3QQ7A 1AA6A 1PYQA 4NOHA 2KI8A 1UHEA 3O5AA 2VPWA 1YLEA 1YNJD 4DMRA 1EU1A 2JA6A 1PQFA 1SFOA 1TWGA 3GTMA 2AE0X 1AW8B 2PJHB 4AOKB 1WCMA 1PQEA 2R7ZA 1CR5A 3H0GA 2E2IA 2E2HA 2B63A 2A68D 3ML1A 2PJJA 3IR6A 3OUGA 3CZBA 4KODA 1SIWA 1QDNA 2DMRA 3PLXB 1PPYA 1IW7D 4KDIA 2C45A 1Y1VA 3HU3A 1H5NA 1Q16A 1DMSA 2JA7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KQG A;  3IR7 A;  3TIW A;  1TWA A;  1E32 A;  1PT1 A;  2JIR A;  2NAP A;  5B6C A;  3CF2 A;  2JA5 A;  2VPY A;  4CRY G;  3HU1 A;  3HU2 A;  1Y5I A;  2NVY A;  1PYU B;  1UHD A;  3QWZ A;  1I50 A;  1R7R A;  5C1B A;  5T5M D;  2WAQ A;  1CZ4 A;  2NVX A;  5FTK A;  3GTL A;  3FKI A;  2EEO B;  1CZ5 A;  1H0H A;  4RV0 A;  2V45 A;  5FTN A;  1Y1W A;  4C2M A;  5DYG A;  4AON B;  3IR5 A;  1PT0 A;  1E61 A;  3HKZ A;  2R93 A;  5GLF A;  1QCS A;  4CS0 A;  1FDO A;  4KO8 A;  2PMZ A;  3QC8 A;  3TM7 B;  2JIP A;  1K83 A;  5FTM A;  1S3S A;  1TWF A;  2VPZ A;  2JIQ A;  3GTG A;  1G8K A;  1DMR A;  1R9T A;  1PQH A;  3QQ8 A;  3GTK A;  4GA6 A;  2YU9 A;  3CQZ A;  2VUM A;  1TWC A;  4CRZ A;  4AYB A;  4QIW A;  2Y0S A;  4AZD A;  2V3V A;  1E60 A;  1E18 A;  2JIO A;  1R27 A;  1WLF A;  1I3Q A;  4GA5 A;  3GTQ A;  4KDL A;  1E5V A;  1KQF A;  5EPP A;  4AAY A;  5FTJ A;  4KLN A;  2WB1 A;  1TMO A;  3DMR A;  1OGY A;  2E7Z A;  5FTL A;  3GTO A;  2R92 A;  2IV2 X;  1VC3 B;  1FDI A;  4D7Z B;  2VPX A;  5C18 A;  3GTJ A;  5T5I D;  1TWH A;  2JIM A;  5DYI A;  1Y4Z A;  3GTP A;  1G8J A;  2NYA A;  3QQ7 A;  1AA6 A;  1PYQ A;  2KI8 A;  1UHE A;  3O5A A;  2VPW A;  1YLE A;  4DMR A;  1EU1 A;  2JA6 A;  1PQF A;  1SFO A;  1TWG A;  3GTM A;  1AW8 B;  2PJH B;  4AOK B;  1WCM A;  1PQE A;  2R7Z A;  1CR5 A;  3H0G A;  2E2I A;  2E2H A;  2B63 A;  3ML1 A;  3OUG A;  3IR6 A;  4KOD A;  1SIW A;  1QDN A;  2DMR A;  3PLX B;  1PPY A;  1IW7 D;  4KDI A;  2C45 A;  1Y1V A;  3HU3 A;  1H5N A;  1Q16 A;  1DMS A;  2JA7 A; 
#chains in the Genus database with same CATH topology
 3X2J A;  1KQG A;  3IR7 A;  3TIW A;  1TWA A;  4JP6 A;  1E32 A;  1PT1 A;  2JIR A;  2NAP A;  4ZM7 A;  3CF2 A;  5B6C A;  1ZYR D;  2JA5 A;  2VPY A;  2GAE A;  4CRY G;  3HU1 A;  2BE5 D;  3HU2 A;  1Y5I A;  2NVY A;  1PYU B;  1UHD A;  2YUJ A;  3QWZ A;  3SUL A;  2CW0 D;  2KQA A;  5GLY A;  1I50 A;  1R7R A;  5C1B A;  5T5M D;  3D30 A;  2WAQ A;  1CZ4 A;  3SUM A;  3SUJ A;  4JCW A;  5GM9 A;  5FTK A;  2A69 D;  3GTL A;  2NVX A;  3FKI A;  2EEO B;  3X2P A;  1CZ5 A;  1H0H A;  4RV0 A;  3X2I A;  2V45 A;  5FTN A;  1Y1W A;  3ENG A;  4C2M A;  5DYG A;  2G5D A;  4AON B;  3IR5 A;  1PT0 A;  2PI8 A;  1E61 A;  4FFT A;  3HKZ A;  2R93 A;  1OA9 A;  5GLF A;  1QCS A;  4CS0 A;  1FDO A;  4FG2 A;  2PMZ A;  3QC8 A;  4KO8 A;  4L48 A;  2JIP A;  3TM7 B;  1K83 A;  5FTM A;  1S3S A;  1TWF A;  2A6E D;  2VPZ A;  3X2H A;  2JIQ A;  3GTG A;  1G8K A;  1DMR A;  4AVR A;  1YNN D;  1R9T A;  1PQH A;  3QQ8 A;  3GTK A;  4GA6 A;  2YU9 A;  3CQZ A;  2VUM A;  1TWC A;  4CRZ A;  4JP7 A;  4AYB A;  4QIW A;  2Y0S A;  4AZD A;  3X2O A;  2V3V A;  1BW3 A;  1E60 A;  1E18 A;  2JIO A;  1R27 A;  1WLF A;  2A6H D;  1I3Q A;  4GA5 A;  1N10 A;  3GTQ A;  2G6G A;  4KDL A;  1E5V A;  1KQF A;  2HCZ X;  4JJO A;  5EPP A;  4AAY A;  5FTJ A;  2PIC A;  2WB1 A;  4KLN A;  1TMO A;  3DMR A;  1OGY A;  2E7Z A;  5FTL A;  3GTO A;  1L8F A;  2R92 A;  2IV2 X;  1HD5 A;  1VC3 B;  1OA7 A;  2ENG A;  1FDI A;  5GLX A;  2O5J D;  1ZC1 A;  4D7Z B;  2VPX A;  5C18 A;  3GTJ A;  2PNW A;  5T5I D;  1TWH A;  2JIM A;  3X2M A;  5DYI A;  1SMY D;  1Y4Z A;  3GTP A;  1G8J A;  2NYA A;  3QQ7 A;  1AA6 A;  1BW4 A;  1PYQ A;  4NOH A;  2KI8 A;  1UHE A;  3O5A A;  2VPW A;  1YLE A;  1YNJ D;  1WC2 A;  1EU1 A;  3X2N A;  4DMR A;  2JA6 A;  1PQF A;  1SFO A;  4FG4 A;  1TWG A;  3X2L A;  4ENG A;  2BH0 A;  3GTM A;  5H4U A;  3X2G A;  2AE0 X;  1AW8 B;  2PJH B;  4AOK B;  1WCM A;  1PQE A;  2R7Z A;  1CR5 A;  3X2K A;  3H0G A;  2E2I A;  2E2H A;  2B63 A;  2A68 D;  3ML1 A;  2PJJ A;  3IR6 A;  3OUG A;  3CZB A;  4KOD A;  1SIW A;  1QDN A;  2DMR A;  3SUK A;  3PLX B;  1PPY A;  1IW7 D;  4KDI A;  4JS7 A;  3M3G A;  2C45 A;  1Y1V A;  3HU3 A;  4FER A;  1H5N A;  1Q16 A;  1DMS A;  2JA7 A; 
#chains in the Genus database with same CATH homology
 1KQG A;  3IR7 A;  3TIW A;  1TWA A;  1E32 A;  1PT1 A;  2JIR A;  2NAP A;  5B6C A;  3CF2 A;  2JA5 A;  1ZYR D;  2VPY A;  2GAE A;  4CRY G;  3HU1 A;  2BE5 D;  3HU2 A;  1Y5I A;  2NVY A;  1PYU B;  1UHD A;  2YUJ A;  3QWZ A;  2CW0 D;  1I50 A;  1R7R A;  5C1B A;  5T5M D;  2WAQ A;  1CZ4 A;  2NVX A;  5FTK A;  2A69 D;  3GTL A;  3FKI A;  2EEO B;  1CZ5 A;  1H0H A;  4RV0 A;  2V45 A;  5FTN A;  1Y1W A;  4C2M A;  5DYG A;  2G5D A;  4AON B;  3IR5 A;  1PT0 A;  2PI8 A;  1E61 A;  3HKZ A;  2R93 A;  5GLF A;  1QCS A;  4CS0 A;  1FDO A;  4KO8 A;  2PMZ A;  3QC8 A;  3TM7 B;  2JIP A;  1K83 A;  5FTM A;  1S3S A;  1TWF A;  2A6E D;  2VPZ A;  2JIQ A;  3GTG A;  1G8K A;  1DMR A;  1YNN D;  1R9T A;  1PQH A;  3QQ8 A;  3GTK A;  4GA6 A;  2YU9 A;  3CQZ A;  2VUM A;  1TWC A;  4CRZ A;  4AYB A;  4QIW A;  2Y0S A;  4AZD A;  2V3V A;  1E60 A;  1E18 A;  2JIO A;  1R27 A;  1WLF A;  2A6H D;  1I3Q A;  4GA5 A;  3GTQ A;  2G6G A;  4KDL A;  1E5V A;  1KQF A;  5EPP A;  4AAY A;  5FTJ A;  2PIC A;  2WB1 A;  4KLN A;  1TMO A;  3DMR A;  1OGY A;  2E7Z A;  5FTL A;  3GTO A;  2R92 A;  2IV2 X;  1VC3 B;  1FDI A;  2O5J D;  1ZC1 A;  4D7Z B;  2VPX A;  5C18 A;  3GTJ A;  2PNW A;  5T5I D;  1TWH A;  2JIM A;  5DYI A;  1SMY D;  1Y4Z A;  3GTP A;  1G8J A;  2NYA A;  3QQ7 A;  1AA6 A;  1PYQ A;  4NOH A;  2KI8 A;  1UHE A;  3O5A A;  2VPW A;  1YLE A;  1YNJ D;  4DMR A;  1EU1 A;  2JA6 A;  1PQF A;  1SFO A;  1TWG A;  3GTM A;  2AE0 X;  1AW8 B;  2PJH B;  4AOK B;  1WCM A;  1PQE A;  2R7Z A;  1CR5 A;  3H0G A;  2E2I A;  2E2H A;  2B63 A;  2A68 D;  3ML1 A;  2PJJ A;  3IR6 A;  3OUG A;  3CZB A;  4KOD A;  1SIW A;  1QDN A;  2DMR A;  3PLX B;  1PPY A;  1IW7 D;  4KDI A;  2C45 A;  1Y1V A;  3HU3 A;  1H5N A;  1Q16 A;  1DMS A;  2JA7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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