4AZDA

T57v mutant of aspartate decarboxylase
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
122
structure length
122
Chain Sequence
b'VPRGSMIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSVYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRT'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ASPARTATE 1-DECARBOXYLASE
publication title Threonine 57 is Required for the Post-Translational Activation of Escherichia Coli Aspartate Alpha-Decarboxylase
pubmed doi rcsb
source organism Escherichia coli
molecule tags Lyase
total genus 35
structure length 122
sequence length 122
chains with identical sequence B
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2012-06-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 4azdA00
2WAQA 4AAYA 2PJHB 2VPWA 1E32A 3O5AA 1PQEA 3QWZA 1KQGA 1TWFA 1PQFA 1UHDA 1Q16A 1PT0A 5FTKA 1PYQA 3HU2A 4KO8A 2R7ZA 3HU1A 4KDIA 2NVXA 1SFOA 1E5VA 4KDLA 2IV2X 4C2MA 5C18A 1R7RA 3FKIA 5DYIA 3QQ7A 3GTJA 2KI8A 2NYAA 2JIOA 2V45A 3GTOA 3TM7B 2JA5A 1E18A 1CZ4A 1EU1A 1IW7D 4AONB 2E7ZA 4AZDA 1FDIA 1TWCA 4GA6A 2E2HA 1R27A 1R9TA 1CZ5A 1K83A 2V3VA 1YLEA 4D7ZB 1Y1WA 2JA7A 2R93A 1OGYA 2C45A 3OUGA 3HKZA 1PPYA 1G8KA 2R92A 2JIQA 4QIWA 5FTJA 1QDNA 4CS0A 1TWHA 4CRZA 1DMRA 4DMRA 5T5ID 1H0HA 3CQZA 2DMRA 1I3QA 3TIWA 3GTQA 5GLFA 2YU9A 3CF2A 2VUMA 2VPYA 2WB1A 2Y0SA 1E61A 1Y1VA 4CRYG 1I50A 1FDOA 2EEOB 4AOKB 3IR7A 1KQFA 1H5NA 4KLNA 5FTMA 4RV0A 1CR5A 3GTPA 3IR6A 2B63A 1Y4ZA 1TMOA 2JIMA 1PYUB 3IR5A 3QC8A 2JIRA 2VPXA 1VC3B 4AYBA 3GTLA 2E2IA 3DMRA 5EPPA 3GTKA 1G8JA 1Y5IA 1E60A 5FTLA 2NAPA 3GTGA 1DMSA 1PQHA 1WCMA 3H0GA 3QQ8A 1S3SA 2JA6A 1AW8B 3PLXB 1PT1A 5B6CA 1TWGA 2VPZA 2JIPA 1SIWA 4GA5A 3ML1A 1QCSA 5T5MD 5FTNA 1AA6A 3GTMA 1UHEA 1WLFA 5C1BA 1TWAA 2PMZA 4KODA 5DYGA 3HU3A 2NVYA
chains in the Genus database with same CATH superfamily
2WAQA 4AAYA 4ZM7A 3X2IA 2PJHB 2VPWA 5GLXA 1E32A 3O5AA 1PQEA 3QWZA 1KQGA 1TWFA 1PQFA 1UHDA 1Q16A 1PT0A 2PI8A 1PYQA 4JS7A 3HU2A 4KO8A 2HCZX 4FG4A 3HU1A 5FTKA 2R7ZA 4KDIA 2NVXA 2A68D 1OA9A 3X2JA 1SFOA 1E5VA 4KDLA 2IV2X 4C2MA 5C18A 3X2PA 1BW3A 4L48A 1R7RA 2BH0A 3FKIA 5DYIA 1YNND 1L8FA 3QQ7A 3GTJA 2PJJA 2KI8A 3X2GA 2NYAA 2JIOA 2V45A 3GTOA 3SULA 3TM7B 2JA5A 2PICA 1E18A 2BE5D 1CZ4A 1EU1A 3X2KA 1IW7D 4AONB 2E7ZA 1N10A 4AZDA 1FDIA 1TWCA 4GA6A 2E2HA 1R27A 1R9TA 2A69D 1CZ5A 1K83A 2V3VA 1YLEA 4D7ZB 1Y1WA 2JA7A 4FG2A 2R93A 1OGYA 2C45A 3D30A 3OUGA 3HKZA 1PPYA 4AVRA 5H4UA 1G8KA 1WC2A 2R92A 1ZC1A 2JIQA 4QIWA 5FTJA 2O5JD 1QDNA 2PNWA 4CS0A 1TWHA 4CRZA 1DMRA 4DMRA 5T5ID 1H0HA 3CQZA 2KQAA 2DMRA 1OA7A 2YUJA 1I3QA 2AE0X 2A6HD 1YNJD 3TIWA 3X2NA 3GTQA 2CW0D 1SMYD 5GLFA 2YU9A 5GLYA 3CF2A 2VUMA 2G5DA 2VPYA 2WB1A 2Y0SA 4NOHA 1E61A 1Y1VA 4CRYG 1I50A 3CZBA 1FDOA 2EEOB 4JCWA 3SUKA 4AOKB 3X2LA 3IR7A 4ENGA 1KQFA 1ZYRD 1H5NA 4KLNA 5FTMA 4RV0A 1CR5A 3GTPA 3IR6A 2B63A 1Y4ZA 1TMOA 2JIMA 1PYUB 3IR5A 3QC8A 3SUMA 3X2HA 5GM9A 2JIRA 2VPXA 1VC3B 2ENGA 4AYBA 4JP7A 2GAEA 3X2OA 3GTLA 2E2IA 1HD5A 3DMRA 5EPPA 3GTKA 1G8JA 1Y5IA 2A6ED 1E60A 5FTLA 2NAPA 3GTGA 1DMSA 1PQHA 1WCMA 3H0GA 2G6GA 3QQ8A 4FFTA 4JP6A 1S3SA 2JA6A 1AW8B 3PLXB 1PT1A 5B6CA 1TWGA 2VPZA 3M3GA 3SUJA 2JIPA 1SIWA 4GA5A 3ML1A 1QCSA 5T5MD 5FTNA 1BW4A 4FERA 1AA6A 3GTMA 1UHEA 1WLFA 3ENGA 5C1BA 1TWAA 2PMZA 4KODA 5DYGA 3HU3A 4JJOA 3X2MA 2NVYA
chains in the Genus database with same CATH topology
2WAQA 4AAYA 2PJHB 2VPWA 1E32A 3O5AA 1PQEA 3QWZA 1KQGA 1TWFA 1PQFA 1UHDA 1Q16A 1PT0A 2PI8A 1PYQA 5FTKA 3HU2A 4KO8A 2R7ZA 3HU1A 4KDIA 2NVXA 2A68D 1SFOA 1E5VA 4KDLA 2IV2X 4C2MA 5C18A 1R7RA 3FKIA 5DYIA 1YNND 3QQ7A 3GTJA 2PJJA 2KI8A 2NYAA 2JIOA 2V45A 3GTOA 3TM7B 2JA5A 2PICA 1E18A 2BE5D 1CZ4A 1EU1A 1IW7D 4AONB 2E7ZA 4AZDA 1FDIA 1TWCA 4GA6A 2E2HA 1R27A 1R9TA 2A69D 1CZ5A 1K83A 2V3VA 1YLEA 4D7ZB 1Y1WA 2JA7A 2R93A 1OGYA 2C45A 3OUGA 3HKZA 1PPYA 1G8KA 2R92A 1ZC1A 2JIQA 4QIWA 5FTJA 2O5JD 1QDNA 2PNWA 4CS0A 1TWHA 4CRZA 1DMRA 4DMRA 5T5ID 1H0HA 3CQZA 2DMRA 2YUJA 1I3QA 2AE0X 2A6HD 1YNJD 3TIWA 3GTQA 2CW0D 1SMYD 5GLFA 2YU9A 3CF2A 2VUMA 2G5DA 2VPYA 2WB1A 2Y0SA 4NOHA 1E61A 1Y1VA 4CRYG 1I50A 3CZBA 1FDOA 2EEOB 4AOKB 3IR7A 1KQFA 1ZYRD 1H5NA 4KLNA 5FTMA 4RV0A 1CR5A 3GTPA 3IR6A 2B63A 1Y4ZA 1TMOA 2JIMA 1PYUB 3IR5A 3QC8A 2JIRA 2VPXA 1VC3B 4AYBA 2GAEA 3GTLA 2E2IA 3DMRA 5EPPA 3GTKA 1G8JA 1Y5IA 2A6ED 1E60A 5FTLA 2NAPA 3GTGA 1DMSA 1PQHA 1WCMA 3H0GA 2G6GA 3QQ8A 1S3SA 2JA6A 1AW8B 3PLXB 1PT1A 5B6CA 1TWGA 2VPZA 2JIPA 1SIWA 4GA5A 3ML1A 1QCSA 5T5MD 5FTNA 1AA6A 3GTMA 1UHEA 1WLFA 5C1BA 1TWAA 2PMZA 4KODA 5DYGA 3HU3A 2NVYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WAQ A;  4AAY A;  2PJH B;  2VPW A;  1E32 A;  3O5A A;  1PQE A;  3QWZ A;  1KQG A;  1TWF A;  1PQF A;  1UHD A;  1Q16 A;  1PT0 A;  5FTK A;  1PYQ A;  3HU2 A;  4KO8 A;  2R7Z A;  3HU1 A;  4KDI A;  2NVX A;  1SFO A;  1E5V A;  4KDL A;  2IV2 X;  4C2M A;  5C18 A;  1R7R A;  3FKI A;  5DYI A;  3QQ7 A;  3GTJ A;  2KI8 A;  2NYA A;  2JIO A;  2V45 A;  3GTO A;  3TM7 B;  2JA5 A;  1E18 A;  1CZ4 A;  1EU1 A;  1IW7 D;  4AON B;  2E7Z A;  4AZD A;  1FDI A;  1TWC A;  4GA6 A;  2E2H A;  1R27 A;  1R9T A;  1CZ5 A;  1K83 A;  2V3V A;  1YLE A;  4D7Z B;  1Y1W A;  2JA7 A;  2R93 A;  1OGY A;  2C45 A;  3OUG A;  3HKZ A;  1PPY A;  1G8K A;  2R92 A;  2JIQ A;  4QIW A;  5FTJ A;  1QDN A;  4CS0 A;  1TWH A;  4CRZ A;  1DMR A;  4DMR A;  5T5I D;  1H0H A;  3CQZ A;  2DMR A;  1I3Q A;  3TIW A;  3GTQ A;  5GLF A;  2YU9 A;  3CF2 A;  2VUM A;  2VPY A;  2WB1 A;  2Y0S A;  1E61 A;  1Y1V A;  4CRY G;  1I50 A;  1FDO A;  2EEO B;  4AOK B;  3IR7 A;  1KQF A;  1H5N A;  4KLN A;  5FTM A;  4RV0 A;  1CR5 A;  3GTP A;  3IR6 A;  2B63 A;  1Y4Z A;  1TMO A;  2JIM A;  1PYU B;  3IR5 A;  3QC8 A;  2JIR A;  2VPX A;  1VC3 B;  4AYB A;  3GTL A;  2E2I A;  3DMR A;  5EPP A;  3GTK A;  1G8J A;  1Y5I A;  1E60 A;  5FTL A;  2NAP A;  3GTG A;  1DMS A;  1PQH A;  1WCM A;  3H0G A;  3QQ8 A;  1S3S A;  2JA6 A;  1AW8 B;  3PLX B;  1PT1 A;  5B6C A;  1TWG A;  2VPZ A;  2JIP A;  1SIW A;  4GA5 A;  3ML1 A;  1QCS A;  5T5M D;  5FTN A;  1AA6 A;  3GTM A;  1UHE A;  1WLF A;  5C1B A;  1TWA A;  2PMZ A;  4KOD A;  5DYG A;  3HU3 A;  2NVY A; 
#chains in the Genus database with same CATH topology
 2WAQ A;  4AAY A;  4ZM7 A;  3X2I A;  2PJH B;  2VPW A;  5GLX A;  1E32 A;  3O5A A;  1PQE A;  3QWZ A;  1KQG A;  1TWF A;  1PQF A;  1UHD A;  1Q16 A;  1PT0 A;  2PI8 A;  1PYQ A;  4JS7 A;  3HU2 A;  4KO8 A;  2HCZ X;  4FG4 A;  3HU1 A;  5FTK A;  2R7Z A;  4KDI A;  2NVX A;  2A68 D;  1OA9 A;  3X2J A;  1SFO A;  1E5V A;  4KDL A;  2IV2 X;  4C2M A;  5C18 A;  3X2P A;  1BW3 A;  4L48 A;  1R7R A;  2BH0 A;  3FKI A;  5DYI A;  1YNN D;  1L8F A;  3QQ7 A;  3GTJ A;  2PJJ A;  2KI8 A;  3X2G A;  2NYA A;  2JIO A;  2V45 A;  3GTO A;  3SUL A;  3TM7 B;  2JA5 A;  2PIC A;  1E18 A;  2BE5 D;  1CZ4 A;  1EU1 A;  3X2K A;  1IW7 D;  4AON B;  2E7Z A;  1N10 A;  4AZD A;  1FDI A;  1TWC A;  4GA6 A;  2E2H A;  1R27 A;  1R9T A;  2A69 D;  1CZ5 A;  1K83 A;  2V3V A;  1YLE A;  4D7Z B;  1Y1W A;  2JA7 A;  4FG2 A;  2R93 A;  1OGY A;  2C45 A;  3D30 A;  3OUG A;  3HKZ A;  1PPY A;  4AVR A;  5H4U A;  1G8K A;  1WC2 A;  2R92 A;  1ZC1 A;  2JIQ A;  4QIW A;  5FTJ A;  2O5J D;  1QDN A;  2PNW A;  4CS0 A;  1TWH A;  4CRZ A;  1DMR A;  4DMR A;  5T5I D;  1H0H A;  3CQZ A;  2KQA A;  2DMR A;  1OA7 A;  2YUJ A;  1I3Q A;  2AE0 X;  2A6H D;  1YNJ D;  3TIW A;  3X2N A;  3GTQ A;  2CW0 D;  1SMY D;  5GLF A;  2YU9 A;  5GLY A;  3CF2 A;  2VUM A;  2G5D A;  2VPY A;  2WB1 A;  2Y0S A;  4NOH A;  1E61 A;  1Y1V A;  4CRY G;  1I50 A;  3CZB A;  1FDO A;  2EEO B;  4JCW A;  3SUK A;  4AOK B;  3X2L A;  3IR7 A;  4ENG A;  1KQF A;  1ZYR D;  1H5N A;  4KLN A;  5FTM A;  4RV0 A;  1CR5 A;  3GTP A;  3IR6 A;  2B63 A;  1Y4Z A;  1TMO A;  2JIM A;  1PYU B;  3IR5 A;  3QC8 A;  3SUM A;  3X2H A;  5GM9 A;  2JIR A;  2VPX A;  1VC3 B;  2ENG A;  4AYB A;  4JP7 A;  2GAE A;  3X2O A;  3GTL A;  2E2I A;  1HD5 A;  3DMR A;  5EPP A;  3GTK A;  1G8J A;  1Y5I A;  2A6E D;  1E60 A;  5FTL A;  2NAP A;  3GTG A;  1DMS A;  1PQH A;  1WCM A;  3H0G A;  2G6G A;  3QQ8 A;  4FFT A;  4JP6 A;  1S3S A;  2JA6 A;  1AW8 B;  3PLX B;  1PT1 A;  5B6C A;  1TWG A;  2VPZ A;  3M3G A;  3SUJ A;  2JIP A;  1SIW A;  4GA5 A;  3ML1 A;  1QCS A;  5T5M D;  5FTN A;  1BW4 A;  4FER A;  1AA6 A;  3GTM A;  1UHE A;  1WLF A;  3ENG A;  5C1B A;  1TWA A;  2PMZ A;  4KOD A;  5DYG A;  3HU3 A;  4JJO A;  3X2M A;  2NVY A; 
#chains in the Genus database with same CATH homology
 2WAQ A;  4AAY A;  2PJH B;  2VPW A;  1E32 A;  3O5A A;  1PQE A;  3QWZ A;  1KQG A;  1TWF A;  1PQF A;  1UHD A;  1Q16 A;  1PT0 A;  2PI8 A;  1PYQ A;  5FTK A;  3HU2 A;  4KO8 A;  2R7Z A;  3HU1 A;  4KDI A;  2NVX A;  2A68 D;  1SFO A;  1E5V A;  4KDL A;  2IV2 X;  4C2M A;  5C18 A;  1R7R A;  3FKI A;  5DYI A;  1YNN D;  3QQ7 A;  3GTJ A;  2PJJ A;  2KI8 A;  2NYA A;  2JIO A;  2V45 A;  3GTO A;  3TM7 B;  2JA5 A;  2PIC A;  1E18 A;  2BE5 D;  1CZ4 A;  1EU1 A;  1IW7 D;  4AON B;  2E7Z A;  4AZD A;  1FDI A;  1TWC A;  4GA6 A;  2E2H A;  1R27 A;  1R9T A;  2A69 D;  1CZ5 A;  1K83 A;  2V3V A;  1YLE A;  4D7Z B;  1Y1W A;  2JA7 A;  2R93 A;  1OGY A;  2C45 A;  3OUG A;  3HKZ A;  1PPY A;  1G8K A;  2R92 A;  1ZC1 A;  2JIQ A;  4QIW A;  5FTJ A;  2O5J D;  1QDN A;  2PNW A;  4CS0 A;  1TWH A;  4CRZ A;  1DMR A;  4DMR A;  5T5I D;  1H0H A;  3CQZ A;  2DMR A;  2YUJ A;  1I3Q A;  2AE0 X;  2A6H D;  1YNJ D;  3TIW A;  3GTQ A;  2CW0 D;  1SMY D;  5GLF A;  2YU9 A;  3CF2 A;  2VUM A;  2G5D A;  2VPY A;  2WB1 A;  2Y0S A;  4NOH A;  1E61 A;  1Y1V A;  4CRY G;  1I50 A;  3CZB A;  1FDO A;  2EEO B;  4AOK B;  3IR7 A;  1KQF A;  1ZYR D;  1H5N A;  4KLN A;  5FTM A;  4RV0 A;  1CR5 A;  3GTP A;  3IR6 A;  2B63 A;  1Y4Z A;  1TMO A;  2JIM A;  1PYU B;  3IR5 A;  3QC8 A;  2JIR A;  2VPX A;  1VC3 B;  4AYB A;  2GAE A;  3GTL A;  2E2I A;  3DMR A;  5EPP A;  3GTK A;  1G8J A;  1Y5I A;  2A6E D;  1E60 A;  5FTL A;  2NAP A;  3GTG A;  1DMS A;  1PQH A;  1WCM A;  3H0G A;  2G6G A;  3QQ8 A;  1S3S A;  2JA6 A;  1AW8 B;  3PLX B;  1PT1 A;  5B6C A;  1TWG A;  2VPZ A;  2JIP A;  1SIW A;  4GA5 A;  3ML1 A;  1QCS A;  5T5M D;  5FTN A;  1AA6 A;  3GTM A;  1UHE A;  1WLF A;  5C1B A;  1TWA A;  2PMZ A;  4KOD A;  5DYG A;  3HU3 A;  2NVY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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