3X2NA

Proton relay pathway in inverting cellulase
Total Genus 49
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
180
structure length
180
Chain Sequence
b'ATGGYVQQATGQASFTMYSGCGSPACGKAASGFTAAINQLAFGSAPGLGAGDACGRCFALTGNHDPYSPNYTGPFGQTIVVKVTDLCPVQGNQEFCGQTTSNPTNQHGMPFHFDICEDTGGSAKFFPSGHGALTGTFTEVSCSQWSGSDGGQLWNGACLSGETAPNWPSTACGNKGTAPS'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Endoglucanase V-like protein
publication title Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
doi rcsb
source organism Phanerochaete chrysosporium
molecule tags Hydrolase
total genus 49
structure length 180
sequence length 180
ec nomenclature
pdb deposition date 2014-12-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 3x2nA00
3CZBA 4ZM7A 2PICA 1BW4A 1HD5A 4FG2A 2KQAA 5H4UA 4AVRA 3X2NA 3M3GA 3SULA 4JCWA 2HCZX 5GLYA 4FFTA 1BW3A 3ENGA 5GM9A 2ENGA 1OA9A 2BH0A 3X2MA 1L8FA 3X2LA 2G5DA 4JJOA 3X2OA 2AE0X 4JP6A 3X2JA 4L48A 4JS7A 5GLXA 3SUJA 4FERA 3X2HA 4JP7A 2PI8A 3D30A 4FG4A 2GAEA 1N10A 4ENGA 2PJJA 1WC2A 3X2GA 3X2PA 3SUKA 3X2KA 3SUMA 2PNWA 2G6GA 3X2IA 1OA7A
chains in the Genus database with same CATH superfamily
3CZBA 5T5ID 4AONB 4ZM7A 2PICA 1HD5A 1YNND 4D7ZB 2JIOA 4KLNA 5FTLA 2IV2X 2A68D 1I3QA 2YU9A 2R92A 3M3GA 3QQ7A 1PPYA 4JCWA 1H0HA 2WB1A 4QIWA 3TM7B 1CZ4A 5C18A 2JIQA 1E18A 2BH0A 3X2MA 4AAYA 2G5DA 3OUGA 4JJOA 2VPZA 2KI8A 1S3SA 5EPPA 2A69D 2PI8A 1E61A 1PT1A 1YNJD 2EEOB 1E32A 1E60A 3DMRA 2O5JD 2G6GA 2VPWA 4KDIA 1QDNA 4NOHA 4AOKB 2JIPA 4AYBA 4KDLA 1H5NA 2PJHB 5T5MD 2JA6A 2KQAA 3QQ8A 2A6ED 2PMZA 5H4UA 4C2MA 1TWFA 1SFOA 5FTKA 2NYAA 3CF2A 3HU2A 1R27A 2VUMA 2VPXA 5B6CA 3X2LA 1PQEA 4JP6A 2NAPA 3X2JA 1Y1VA 1G8JA 2C45A 3FKIA 4ENGA 2PJJA 5C1BA 3X2GA 3GTMA 3HU1A 1FDIA 3X2KA 2R93A 2DMRA 5DYGA 2YUJA 3SUMA 1SIWA 1PQHA 3HKZA 1PYUB 3X2IA 3GTGA 3TIWA 4CRZA 2BE5D 1BW4A 5DYIA 2A6HD 1Y5IA 2V45A 4FG2A 1UHDA 1CZ5A 1Y1WA 2Y0SA 3GTOA 3ML1A 2NVXA 4KO8A 1K83A 1WCMA 2JA5A 3GTPA 3PLXB 4KODA 4FFTA 3ENGA 2VPYA 5GLFA 1L8FA 1AW8B 5FTNA 2JA7A 3IR7A 1UHEA 1TWHA 3IR5A 3SUJA 4JS7A 5GLXA 3GTJA 4DMRA 4FG4A 2GAEA 2JIRA 2E2IA 3QC8A 2B63A 1CR5A 3X2PA 1R7RA 1WLFA 1KQFA 3SUKA 1YLEA 2NVYA 2E7ZA 2WAQA 1QCSA 1KQGA 3SULA 4CRYG 4AZDA 1DMSA 1AA6A 3QWZA 1VC3B 3H0GA 1E5VA 2E2HA 1OGYA 2R7ZA 4CS0A 4GA6A 1TWCA 1FDOA 1PQFA 5FTJA 3X2NA 1G8KA 4AVRA 3O5AA 2HCZX 5GLYA 1SMYD 1TWGA 1PYQA 1BW3A 5GM9A 1Q16A 1DMRA 1OA9A 2ENGA 3GTKA 4RV0A 5FTMA 1R9TA 3X2OA 2AE0X 4GA5A 4L48A 3X2HA 4FERA 4JP7A 3D30A 1N10A 3CQZA 1WC2A 2CW0D 2V3VA 1TMOA 3HU3A 3GTQA 1ZC1A 2JIMA 1I50A 1Y4ZA 3GTLA 1TWAA 2PNWA 1ZYRD 1EU1A 1OA7A 1IW7D 1PT0A 3IR6A
chains in the Genus database with same CATH topology
3CZBA 4ZM7A 2PICA 1BW4A 1HD5A 4FG2A 2KQAA 5H4UA 4AVRA 3X2NA 3M3GA 3SULA 4JCWA 2HCZX 5GLYA 4FFTA 1BW3A 3ENGA 5GM9A 2ENGA 1OA9A 2BH0A 3X2MA 1L8FA 3X2LA 2G5DA 4JJOA 3X2OA 2AE0X 4JP6A 3X2JA 4L48A 4JS7A 5GLXA 3SUJA 4FERA 3X2HA 4JP7A 2PI8A 3D30A 4FG4A 2GAEA 1N10A 4ENGA 2PJJA 1WC2A 3X2GA 3X2PA 3SUKA 3X2KA 3SUMA 2PNWA 2G6GA 3X2IA 1OA7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CZB A;  4ZM7 A;  2PIC A;  1BW4 A;  1HD5 A;  4FG2 A;  2KQA A;  5H4U A;  4AVR A;  3X2N A;  3M3G A;  3SUL A;  4JCW A;  2HCZ X;  5GLY A;  4FFT A;  1BW3 A;  3ENG A;  5GM9 A;  2ENG A;  1OA9 A;  2BH0 A;  3X2M A;  1L8F A;  3X2L A;  2G5D A;  4JJO A;  3X2O A;  2AE0 X;  4JP6 A;  3X2J A;  4L48 A;  4JS7 A;  5GLX A;  3SUJ A;  4FER A;  3X2H A;  4JP7 A;  2PI8 A;  3D30 A;  4FG4 A;  2GAE A;  1N10 A;  4ENG A;  2PJJ A;  1WC2 A;  3X2G A;  3X2P A;  3SUK A;  3X2K A;  3SUM A;  2PNW A;  2G6G A;  3X2I A;  1OA7 A; 
#chains in the Genus database with same CATH topology
 3CZB A;  5T5I D;  4AON B;  4ZM7 A;  2PIC A;  1HD5 A;  1YNN D;  4D7Z B;  2JIO A;  4KLN A;  5FTL A;  2IV2 X;  2A68 D;  1I3Q A;  2YU9 A;  2R92 A;  3M3G A;  3QQ7 A;  1PPY A;  4JCW A;  1H0H A;  2WB1 A;  4QIW A;  3TM7 B;  1CZ4 A;  5C18 A;  2JIQ A;  1E18 A;  2BH0 A;  3X2M A;  4AAY A;  2G5D A;  3OUG A;  4JJO A;  2VPZ A;  2KI8 A;  1S3S A;  5EPP A;  2A69 D;  2PI8 A;  1E61 A;  1PT1 A;  1YNJ D;  2EEO B;  1E32 A;  1E60 A;  3DMR A;  2O5J D;  2G6G A;  2VPW A;  4KDI A;  1QDN A;  4NOH A;  4AOK B;  2JIP A;  4AYB A;  4KDL A;  1H5N A;  2PJH B;  5T5M D;  2JA6 A;  2KQA A;  3QQ8 A;  2A6E D;  2PMZ A;  5H4U A;  4C2M A;  1TWF A;  1SFO A;  5FTK A;  2NYA A;  3CF2 A;  3HU2 A;  1R27 A;  2VUM A;  2VPX A;  5B6C A;  3X2L A;  1PQE A;  4JP6 A;  2NAP A;  3X2J A;  1Y1V A;  1G8J A;  2C45 A;  3FKI A;  4ENG A;  2PJJ A;  5C1B A;  3X2G A;  3GTM A;  3HU1 A;  1FDI A;  3X2K A;  2R93 A;  2DMR A;  5DYG A;  2YUJ A;  3SUM A;  1SIW A;  1PQH A;  3HKZ A;  1PYU B;  3X2I A;  3GTG A;  3TIW A;  4CRZ A;  2BE5 D;  1BW4 A;  5DYI A;  2A6H D;  1Y5I A;  2V45 A;  4FG2 A;  1UHD A;  1CZ5 A;  1Y1W A;  2Y0S A;  3GTO A;  3ML1 A;  2NVX A;  4KO8 A;  1K83 A;  1WCM A;  2JA5 A;  3GTP A;  3PLX B;  4KOD A;  4FFT A;  3ENG A;  2VPY A;  5GLF A;  1L8F A;  1AW8 B;  5FTN A;  2JA7 A;  3IR7 A;  1UHE A;  1TWH A;  3IR5 A;  3SUJ A;  4JS7 A;  5GLX A;  3GTJ A;  4DMR A;  4FG4 A;  2GAE A;  2JIR A;  2E2I A;  3QC8 A;  2B63 A;  1CR5 A;  3X2P A;  1R7R A;  1WLF A;  1KQF A;  3SUK A;  1YLE A;  2NVY A;  2E7Z A;  2WAQ A;  1QCS A;  1KQG A;  3SUL A;  4CRY G;  4AZD A;  1DMS A;  1AA6 A;  3QWZ A;  1VC3 B;  3H0G A;  1E5V A;  2E2H A;  1OGY A;  2R7Z A;  4CS0 A;  4GA6 A;  1TWC A;  1FDO A;  1PQF A;  5FTJ A;  3X2N A;  1G8K A;  4AVR A;  3O5A A;  2HCZ X;  5GLY A;  1SMY D;  1TWG A;  1PYQ A;  1BW3 A;  5GM9 A;  1Q16 A;  1DMR A;  1OA9 A;  2ENG A;  3GTK A;  4RV0 A;  5FTM A;  1R9T A;  3X2O A;  2AE0 X;  4GA5 A;  4L48 A;  3X2H A;  4FER A;  4JP7 A;  3D30 A;  1N10 A;  3CQZ A;  1WC2 A;  2CW0 D;  2V3V A;  1TMO A;  3HU3 A;  3GTQ A;  1ZC1 A;  2JIM A;  1I50 A;  1Y4Z A;  3GTL A;  1TWA A;  2PNW A;  1ZYR D;  1EU1 A;  1OA7 A;  1IW7 D;  1PT0 A;  3IR6 A; 
#chains in the Genus database with same CATH homology
 3CZB A;  4ZM7 A;  2PIC A;  1BW4 A;  1HD5 A;  4FG2 A;  2KQA A;  5H4U A;  4AVR A;  3X2N A;  3M3G A;  3SUL A;  4JCW A;  2HCZ X;  5GLY A;  4FFT A;  1BW3 A;  3ENG A;  5GM9 A;  2ENG A;  1OA9 A;  2BH0 A;  3X2M A;  1L8F A;  3X2L A;  2G5D A;  4JJO A;  3X2O A;  2AE0 X;  4JP6 A;  3X2J A;  4L48 A;  4JS7 A;  5GLX A;  3SUJ A;  4FER A;  3X2H A;  4JP7 A;  2PI8 A;  3D30 A;  4FG4 A;  2GAE A;  1N10 A;  4ENG A;  2PJJ A;  1WC2 A;  3X2G A;  3X2P A;  3SUK A;  3X2K A;  3SUM A;  2PNW A;  2G6G A;  3X2I A;  1OA7 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...