3X2NA

Proton relay pathway in inverting cellulase
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
180
structure length
180
Chain Sequence
ATGGYVQQATGQASFTMYSGCGSPACGKAASGFTAAINQLAFGSAPGLGAGDACGRCFALTGNHDPYSPNYTGPFGQTIVVKVTDLCPVQGNQEFCGQTTSNPTNQHGMPFHFDICEDTGGSAKFFPSGHGALTGTFTEVSCSQWSGSDGGQLWNGACLSGETAPNWPSTACGNKGTAPS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
doi rcsb
source organism Phanerochaete chrysosporium
molecule tags Hydrolase
molecule keywords Endoglucanase V-like protein
total genus 49
structure length 180
sequence length 180
ec nomenclature
pdb deposition date 2014-12-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 3x2nA00
1WC2A 5GM9A 4JS7A 1OA9A 3D30A 3SULA 2PICA 5GLXA 3SUKA 3X2IA 4FFTA 3X2NA 3X2MA 2BH0A 5H4UA 4JJOA 2G5DA 3CZBA 4JP6A 5GLYA 2PNWA 3SUMA 3SUJA 4AVRA 2ENGA 3X2PA 1BW4A 2AE0X 3X2KA 3X2LA 1OA7A 2KQAA 4FERA 2GAEA 1HD5A 2G6GA 4FG2A 4JCWA 4FG4A 4L48A 3X2GA 2HCZX 3X2HA 1BW3A 1N10A 2PI8A 3ENGA 1L8FA 4JP7A 3X2OA 4ENGA 4ZM7A 3M3GA 3X2JA 2PJJA
chains in the Genus database with same CATH superfamily
1WC2A 1E61A 3D30A 1G8JA 2PICA 1Y1VA 2NAPA 5EPPA 2BH0A 3GTOA 2YUJA 5C1BA 4GA6A 1SMYD 2NVYA 4JP6A 3SUJA 1IW7D 3IR7A 3QQ7A 1TMOA 1Y1WA 3X2PA 2E2IA 4KLNA 1Y5IA 3DMRA 1QDNA 1FDIA 1OA7A 1I50A 1H0HA 2VPZA 2GAEA 4FG2A 1ZC1A 1WCMA 1E18A 1N10A 4AYBA 1PT0A 2PI8A 4CRZA 1L8FA 1TWCA 3CQZA 4CS0A 5DYIA 2EEOB 3M3GA 3ML1A 3QWZA 4RV0A 5FTKA 3GTGA 2WB1A 2VPXA 1OGYA 3TIWA 3SUKA 3X2IA 2R7ZA 3OUGA 4GA5A 3X2MA 1WLFA 5GLFA 1UHEA 2BE5D 4C2MA 3O5AA 2G5DA 3CZBA 3HU2A 4D7ZB 1TWFA 2PJHB 2JIMA 1Y4ZA 3GTPA 1PQFA 2CW0D 5T5MD 2NYAA 3X2LA 4FERA 1TWGA 5B6CA 1YNND 3X2HA 1BW3A 1PQHA 5DYGA 1UHDA 4AZDA 3H0GA 4KDLA 3X2OA 5FTNA 1QCSA 4ENGA 1PPYA 4ZM7A 1K83A 1DMSA 3GTKA 1AA6A 3IR6A 4JS7A 2JA5A 2WAQA 2JIQA 5GLXA 3QC8A 2R92A 4FFTA 2JA7A 1E60A 4AONB 3FKIA 4JJOA 5GLYA 2Y0SA 3TM7B 4CRYG 1VC3B 3SUMA 2A69D 2VPWA 3PLXB 1KQGA 1FDOA 1E5VA 1PQEA 4AOKB 1TWHA 1G8KA 1Q16A 1YNJD 2VUMA 2JIOA 3GTMA 1BW4A 1CR5A 2NVXA 2AE0X 2JIRA 3X2KA 2KQAA 1KQFA 3IR5A 1I3QA 1HD5A 1R7RA 2G6GA 4L48A 4FG4A 2VPYA 3GTJA 3CF2A 4QIWA 5FTJA 1PYQA 5T5ID 1H5NA 4DMRA 5FTLA 4AAYA 1E32A 2A68D 2PJJA 1CZ4A 3HKZA 1R9TA 2R93A 5GM9A 1OA9A 2E2HA 3HU3A 3SULA 2DMRA 4KODA 3X2NA 4NOHA 1EU1A 1SIWA 1DMRA 1SFOA 2E7ZA 1TWAA 1PT1A 1S3SA 1AW8B 5H4UA 3GTLA 2JA6A 2C45A 4KO8A 2B63A 2PNWA 4KDIA 2IV2X 1R27A 4AVRA 2ENGA 1YLEA 3HU1A 3QQ8A 2V45A 2O5JD 2JIPA 1PYUB 2A6HD 2PMZA 4JCWA 3X2GA 2HCZX 1CZ5A 3GTQA 5FTMA 2A6ED 3ENGA 4JP7A 5C18A 2KI8A 3X2JA 2V3VA 2YU9A 1ZYRD
chains in the Genus database with same CATH topology
1WC2A 5GM9A 4JS7A 1OA9A 3D30A 3SULA 2PICA 5GLXA 3SUKA 3X2IA 4FFTA 3X2NA 3X2MA 2BH0A 5H4UA 4JJOA 2G5DA 3CZBA 4JP6A 5GLYA 2PNWA 3SUMA 3SUJA 4AVRA 2ENGA 3X2PA 1BW4A 2AE0X 3X2KA 3X2LA 1OA7A 2KQAA 4FERA 2GAEA 1HD5A 2G6GA 4FG2A 4JCWA 4FG4A 4L48A 3X2GA 2HCZX 3X2HA 1BW3A 1N10A 2PI8A 3ENGA 1L8FA 4JP7A 3X2OA 4ENGA 4ZM7A 3M3GA 3X2JA 2PJJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WC2 A;  5GM9 A;  4JS7 A;  1OA9 A;  3D30 A;  3SUL A;  2PIC A;  5GLX A;  3SUK A;  3X2I A;  4FFT A;  3X2N A;  3X2M A;  2BH0 A;  5H4U A;  4JJO A;  2G5D A;  3CZB A;  4JP6 A;  5GLY A;  2PNW A;  3SUM A;  3SUJ A;  4AVR A;  2ENG A;  3X2P A;  1BW4 A;  2AE0 X;  3X2K A;  3X2L A;  1OA7 A;  2KQA A;  4FER A;  2GAE A;  1HD5 A;  2G6G A;  4FG2 A;  4JCW A;  4FG4 A;  4L48 A;  3X2G A;  2HCZ X;  3X2H A;  1BW3 A;  1N10 A;  2PI8 A;  3ENG A;  1L8F A;  4JP7 A;  3X2O A;  4ENG A;  4ZM7 A;  3M3G A;  3X2J A;  2PJJ A; 
#chains in the Genus database with same CATH topology
 1WC2 A;  1E61 A;  3D30 A;  1G8J A;  2PIC A;  1Y1V A;  2NAP A;  5EPP A;  2BH0 A;  3GTO A;  2YUJ A;  5C1B A;  4GA6 A;  1SMY D;  2NVY A;  4JP6 A;  3SUJ A;  1IW7 D;  3IR7 A;  3QQ7 A;  1TMO A;  1Y1W A;  3X2P A;  2E2I A;  4KLN A;  1Y5I A;  3DMR A;  1QDN A;  1FDI A;  1OA7 A;  1I50 A;  1H0H A;  2VPZ A;  2GAE A;  4FG2 A;  1ZC1 A;  1WCM A;  1E18 A;  1N10 A;  4AYB A;  1PT0 A;  2PI8 A;  4CRZ A;  1L8F A;  1TWC A;  3CQZ A;  4CS0 A;  5DYI A;  2EEO B;  3M3G A;  3ML1 A;  3QWZ A;  4RV0 A;  5FTK A;  3GTG A;  2WB1 A;  2VPX A;  1OGY A;  3TIW A;  3SUK A;  3X2I A;  2R7Z A;  3OUG A;  4GA5 A;  3X2M A;  1WLF A;  5GLF A;  1UHE A;  2BE5 D;  4C2M A;  3O5A A;  2G5D A;  3CZB A;  3HU2 A;  4D7Z B;  1TWF A;  2PJH B;  2JIM A;  1Y4Z A;  3GTP A;  1PQF A;  2CW0 D;  5T5M D;  2NYA A;  3X2L A;  4FER A;  1TWG A;  5B6C A;  1YNN D;  3X2H A;  1BW3 A;  1PQH A;  5DYG A;  1UHD A;  4AZD A;  3H0G A;  4KDL A;  3X2O A;  5FTN A;  1QCS A;  4ENG A;  1PPY A;  4ZM7 A;  1K83 A;  1DMS A;  3GTK A;  1AA6 A;  3IR6 A;  4JS7 A;  2JA5 A;  2WAQ A;  2JIQ A;  5GLX A;  3QC8 A;  2R92 A;  4FFT A;  2JA7 A;  1E60 A;  4AON B;  3FKI A;  4JJO A;  5GLY A;  2Y0S A;  3TM7 B;  4CRY G;  1VC3 B;  3SUM A;  2A69 D;  2VPW A;  3PLX B;  1KQG A;  1FDO A;  1E5V A;  1PQE A;  4AOK B;  1TWH A;  1G8K A;  1Q16 A;  1YNJ D;  2VUM A;  2JIO A;  3GTM A;  1BW4 A;  1CR5 A;  2NVX A;  2AE0 X;  2JIR A;  3X2K A;  2KQA A;  1KQF A;  3IR5 A;  1I3Q A;  1HD5 A;  1R7R A;  2G6G A;  4L48 A;  4FG4 A;  2VPY A;  3GTJ A;  3CF2 A;  4QIW A;  5FTJ A;  1PYQ A;  5T5I D;  1H5N A;  4DMR A;  5FTL A;  4AAY A;  1E32 A;  2A68 D;  2PJJ A;  1CZ4 A;  3HKZ A;  1R9T A;  2R93 A;  5GM9 A;  1OA9 A;  2E2H A;  3HU3 A;  3SUL A;  2DMR A;  4KOD A;  3X2N A;  4NOH A;  1EU1 A;  1SIW A;  1DMR A;  1SFO A;  2E7Z A;  1TWA A;  1PT1 A;  1S3S A;  1AW8 B;  5H4U A;  3GTL A;  2JA6 A;  2C45 A;  4KO8 A;  2B63 A;  2PNW A;  4KDI A;  2IV2 X;  1R27 A;  4AVR A;  2ENG A;  1YLE A;  3HU1 A;  3QQ8 A;  2V45 A;  2O5J D;  2JIP A;  1PYU B;  2A6H D;  2PMZ A;  4JCW A;  3X2G A;  2HCZ X;  1CZ5 A;  3GTQ A;  5FTM A;  2A6E D;  3ENG A;  4JP7 A;  5C18 A;  2KI8 A;  3X2J A;  2V3V A;  2YU9 A;  1ZYR D; 
#chains in the Genus database with same CATH homology
 1WC2 A;  5GM9 A;  4JS7 A;  1OA9 A;  3D30 A;  3SUL A;  2PIC A;  5GLX A;  3SUK A;  3X2I A;  4FFT A;  3X2N A;  3X2M A;  2BH0 A;  5H4U A;  4JJO A;  2G5D A;  3CZB A;  4JP6 A;  5GLY A;  2PNW A;  3SUM A;  3SUJ A;  4AVR A;  2ENG A;  3X2P A;  1BW4 A;  2AE0 X;  3X2K A;  3X2L A;  1OA7 A;  2KQA A;  4FER A;  2GAE A;  1HD5 A;  2G6G A;  4FG2 A;  4JCW A;  4FG4 A;  4L48 A;  3X2G A;  2HCZ X;  3X2H A;  1BW3 A;  1N10 A;  2PI8 A;  3ENG A;  1L8F A;  4JP7 A;  3X2O A;  4ENG A;  4ZM7 A;  3M3G A;  3X2J A;  2PJJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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