3X2PA

Neutron and x-ray joint refined structure of pccel45a with cellopentaose at 298k.
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
180
structure length
179
Chain Sequence
ATGGYVQQATGQASFTMYSGCGSPACGKAASGFTAAINQLAFGSAPGLGAGDACGRCFALTGNHDPYSPNYTGPFGQTIVVKVTDLCPVQGQEFCGQTTSNPTNQHGMPFHFDICEDTGGSAKFFPSGHGALTGTFTEVSCSQWSGSDGGQLWNGACLSGETAPNWPSTACGNKGTAPS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Endoglucanase V-like protein
publication title Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
doi rcsb
source organism Phanerochaete chrysosporium
molecule tags Hydrolase
total genus 50
structure length 179
sequence length 180
ec nomenclature
pdb deposition date 2014-12-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 3x2pA00
1HD5A 3X2KA 3X2NA 4ENGA 2PICA 4FERA 4L48A 4AVRA 4JCWA 3D30A 3M3GA 4JP7A 3X2JA 3X2IA 1WC2A 2AE0X 5GLYA 5GLXA 4FG4A 1OA9A 2BH0A 4JS7A 5GM9A 3ENGA 2HCZX 5H4UA 1OA7A 3SULA 1L8FA 4JJOA 2ENGA 3SUKA 2PJJA 3CZBA 2G5DA 3X2LA 1N10A 4JP6A 3X2OA 3X2HA 3X2MA 2PNWA 1BW3A 2PI8A 3X2PA 3X2GA 2G6GA 2GAEA 2KQAA 4FFTA 3SUMA 3SUJA 4ZM7A 1BW4A 4FG2A
chains in the Genus database with same CATH superfamily
4KLNA 2R93A 2WB1A 4D7ZB 1E60A 1SMYD 5T5MD 4AVRA 4JCWA 4CS0A 1YLEA 5EPPA 2WAQA 3HKZA 1E61A 1WC2A 2NVYA 4NOHA 1Y5IA 3FKIA 1IW7D 4RV0A 2HCZX 5H4UA 2JIPA 2E7ZA 3SULA 4JJOA 1UHEA 3OUGA 2ENGA 3GTOA 1G8JA 4KO8A 2A6ED 1N10A 2PNWA 1TWHA 2JA7A 1WLFA 4KDIA 2NAPA 1PYQA 1Y4ZA 2VPXA 1AA6A 3IR6A 1TWFA 2G6GA 3SUMA 3HU1A 5FTKA 2O5JD 2V45A 1E18A 5C1BA 1OGYA 4AOKB 1HD5A 3X2KA 3TIWA 1AW8B 2YU9A 3DMRA 1R7RA 2JIOA 1H0HA 3D30A 4CRZA 5FTNA 2BE5D 2E2IA 2EEOB 5GLYA 3TM7B 2A68D 1TWCA 1E32A 4QIWA 4JS7A 5FTMA 5GM9A 3ENGA 5FTLA 1DMSA 3GTGA 1FDOA 5B6CA 5DYIA 1K83A 1E5VA 3QC8A 1EU1A 2PJJA 3CZBA 4JP6A 2NVXA 1PT1A 3X2HA 2A6HD 1G8KA 5C18A 1FDIA 1YNND 2V3VA 3GTJA 2KQAA 1TMOA 4FFTA 3H0GA 3CQZA 4CRYG 3GTLA 2CW0D 1Y1WA 3HU3A 4ENGA 3X2NA 1SFOA 1PQFA 3IR7A 4FERA 3ML1A 2KI8A 4JP7A 1CR5A 3X2JA 4KDLA 3X2IA 2R92A 5FTJA 5GLXA 1YNJD 1OA7A 1H5NA 1Y1VA 1DMRA 2YUJA 4C2MA 2C45A 4AAYA 3X2LA 2VUMA 1CZ4A 1PT0A 1TWGA 1SIWA 1WCMA 1I50A 5DYGA 2PMZA 1R27A 3HU2A 4AONB 1BW3A 1PPYA 3X2GA 1ZYRD 3GTMA 1CZ5A 3CF2A 2VPZA 3SUJA 4ZM7A 2NYAA 4FG2A 3QQ8A 1PYUB 4GA5A 1VC3B 2PICA 5GLFA 1PQEA 4L48A 3M3GA 1QDNA 1Q16A 1KQFA 1ZC1A 2JA6A 2A69D 3QWZA 4GA6A 2AE0X 4FG4A 1OA9A 2BH0A 2Y0SA 4AYBA 1PQHA 2IV2X 3GTPA 4KODA 4AZDA 1L8FA 2DMRA 3IR5A 3PLXB 5T5ID 1I3QA 2PJHB 1S3SA 3SUKA 1R9TA 3O5AA 2G5DA 3X2OA 2R7ZA 3X2MA 2B63A 2JIQA 2JIRA 3GTKA 2PI8A 2VPYA 3X2PA 2JA5A 1KQGA 2JIMA 1UHDA 2E2HA 1QCSA 2GAEA 3QQ7A 1BW4A 2VPWA 1TWAA 4DMRA 3GTQA
chains in the Genus database with same CATH topology
1HD5A 3X2KA 3X2NA 4ENGA 2PICA 4FERA 4L48A 4AVRA 4JCWA 3D30A 3M3GA 4JP7A 3X2JA 3X2IA 1WC2A 2AE0X 5GLYA 5GLXA 4FG4A 1OA9A 2BH0A 4JS7A 5GM9A 3ENGA 2HCZX 5H4UA 1OA7A 3SULA 1L8FA 4JJOA 2ENGA 3SUKA 2PJJA 3CZBA 2G5DA 3X2LA 1N10A 4JP6A 3X2OA 3X2HA 3X2MA 2PNWA 1BW3A 2PI8A 3X2PA 3X2GA 2G6GA 2GAEA 2KQAA 4FFTA 3SUMA 3SUJA 4ZM7A 1BW4A 4FG2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HD5 A;  3X2K A;  3X2N A;  4ENG A;  2PIC A;  4FER A;  4L48 A;  4AVR A;  4JCW A;  3D30 A;  3M3G A;  4JP7 A;  3X2J A;  3X2I A;  1WC2 A;  2AE0 X;  5GLY A;  5GLX A;  4FG4 A;  1OA9 A;  2BH0 A;  4JS7 A;  5GM9 A;  3ENG A;  2HCZ X;  5H4U A;  1OA7 A;  3SUL A;  1L8F A;  4JJO A;  2ENG A;  3SUK A;  2PJJ A;  3CZB A;  2G5D A;  3X2L A;  1N10 A;  4JP6 A;  3X2O A;  3X2H A;  3X2M A;  2PNW A;  1BW3 A;  2PI8 A;  3X2P A;  3X2G A;  2G6G A;  2GAE A;  2KQA A;  4FFT A;  3SUM A;  3SUJ A;  4ZM7 A;  1BW4 A;  4FG2 A; 
#chains in the Genus database with same CATH topology
 4KLN A;  2R93 A;  2WB1 A;  4D7Z B;  1E60 A;  1SMY D;  5T5M D;  4AVR A;  4JCW A;  4CS0 A;  1YLE A;  5EPP A;  2WAQ A;  3HKZ A;  1E61 A;  1WC2 A;  2NVY A;  4NOH A;  1Y5I A;  3FKI A;  1IW7 D;  4RV0 A;  2HCZ X;  5H4U A;  2JIP A;  2E7Z A;  3SUL A;  4JJO A;  1UHE A;  3OUG A;  2ENG A;  3GTO A;  1G8J A;  4KO8 A;  2A6E D;  1N10 A;  2PNW A;  1TWH A;  2JA7 A;  1WLF A;  4KDI A;  2NAP A;  1PYQ A;  1Y4Z A;  2VPX A;  1AA6 A;  3IR6 A;  1TWF A;  2G6G A;  3SUM A;  3HU1 A;  5FTK A;  2O5J D;  2V45 A;  1E18 A;  5C1B A;  1OGY A;  4AOK B;  1HD5 A;  3X2K A;  3TIW A;  1AW8 B;  2YU9 A;  3DMR A;  1R7R A;  2JIO A;  1H0H A;  3D30 A;  4CRZ A;  5FTN A;  2BE5 D;  2E2I A;  2EEO B;  5GLY A;  3TM7 B;  2A68 D;  1TWC A;  1E32 A;  4QIW A;  4JS7 A;  5FTM A;  5GM9 A;  3ENG A;  5FTL A;  1DMS A;  3GTG A;  1FDO A;  5B6C A;  5DYI A;  1K83 A;  1E5V A;  3QC8 A;  1EU1 A;  2PJJ A;  3CZB A;  4JP6 A;  2NVX A;  1PT1 A;  3X2H A;  2A6H D;  1G8K A;  5C18 A;  1FDI A;  1YNN D;  2V3V A;  3GTJ A;  2KQA A;  1TMO A;  4FFT A;  3H0G A;  3CQZ A;  4CRY G;  3GTL A;  2CW0 D;  1Y1W A;  3HU3 A;  4ENG A;  3X2N A;  1SFO A;  1PQF A;  3IR7 A;  4FER A;  3ML1 A;  2KI8 A;  4JP7 A;  1CR5 A;  3X2J A;  4KDL A;  3X2I A;  2R92 A;  5FTJ A;  5GLX A;  1YNJ D;  1OA7 A;  1H5N A;  1Y1V A;  1DMR A;  2YUJ A;  4C2M A;  2C45 A;  4AAY A;  3X2L A;  2VUM A;  1CZ4 A;  1PT0 A;  1TWG A;  1SIW A;  1WCM A;  1I50 A;  5DYG A;  2PMZ A;  1R27 A;  3HU2 A;  4AON B;  1BW3 A;  1PPY A;  3X2G A;  1ZYR D;  3GTM A;  1CZ5 A;  3CF2 A;  2VPZ A;  3SUJ A;  4ZM7 A;  2NYA A;  4FG2 A;  3QQ8 A;  1PYU B;  4GA5 A;  1VC3 B;  2PIC A;  5GLF A;  1PQE A;  4L48 A;  3M3G A;  1QDN A;  1Q16 A;  1KQF A;  1ZC1 A;  2JA6 A;  2A69 D;  3QWZ A;  4GA6 A;  2AE0 X;  4FG4 A;  1OA9 A;  2BH0 A;  2Y0S A;  4AYB A;  1PQH A;  2IV2 X;  3GTP A;  4KOD A;  4AZD A;  1L8F A;  2DMR A;  3IR5 A;  3PLX B;  5T5I D;  1I3Q A;  2PJH B;  1S3S A;  3SUK A;  1R9T A;  3O5A A;  2G5D A;  3X2O A;  2R7Z A;  3X2M A;  2B63 A;  2JIQ A;  2JIR A;  3GTK A;  2PI8 A;  2VPY A;  3X2P A;  2JA5 A;  1KQG A;  2JIM A;  1UHD A;  2E2H A;  1QCS A;  2GAE A;  3QQ7 A;  1BW4 A;  2VPW A;  1TWA A;  4DMR A;  3GTQ A; 
#chains in the Genus database with same CATH homology
 1HD5 A;  3X2K A;  3X2N A;  4ENG A;  2PIC A;  4FER A;  4L48 A;  4AVR A;  4JCW A;  3D30 A;  3M3G A;  4JP7 A;  3X2J A;  3X2I A;  1WC2 A;  2AE0 X;  5GLY A;  5GLX A;  4FG4 A;  1OA9 A;  2BH0 A;  4JS7 A;  5GM9 A;  3ENG A;  2HCZ X;  5H4U A;  1OA7 A;  3SUL A;  1L8F A;  4JJO A;  2ENG A;  3SUK A;  2PJJ A;  3CZB A;  2G5D A;  3X2L A;  1N10 A;  4JP6 A;  3X2O A;  3X2H A;  3X2M A;  2PNW A;  1BW3 A;  2PI8 A;  3X2P A;  3X2G A;  2G6G A;  2GAE A;  2KQA A;  4FFT A;  3SUM A;  3SUJ A;  4ZM7 A;  1BW4 A;  4FG2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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