1PQFA

Glycine 24 to serine mutation of aspartate decarboxylase
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
127
structure length
126
Chain Sequence
b'PRGSMIRTMLQGKLHRVKVTHADLHYESSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTAKAIPV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Aspartate 1-decarboxylase
molecule tags Lyase
source organism Escherichia coli
publication title Structural constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
total genus 35
structure length 126
sequence length 127
chains with identical sequence B
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-06-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1pqfA00
1UHDA 4CRZA 2VPWA 2V3VA 3IR6A 1E61A 2WB1A 3HKZA 2E7ZA 4AOKB 1Y5IA 1AW8B 2DMRA 1TWFA 3O5AA 2R7ZA 1Q16A 3CF2A 3DMRA 3ML1A 5DYIA 2JA7A 1OGYA 1KQGA 1DMRA 1TWCA 5EPPA 1PQHA 1H0HA 1YLEA 5B6CA 1G8JA 3GTOA 1UHEA 3GTGA 2V45A 1E32A 1TWGA 2NYAA 4AZDA 1CZ5A 1H5NA 2VPYA 3QWZA 1PT1A 1TWAA 3GTKA 1FDIA 3HU3A 1EU1A 4RV0A 2R93A 4GA5A 1I3QA 3GTJA 3FKIA 3H0GA 2JIOA 5FTNA 4QIWA 2JIPA 2R92A 2JA5A 5FTJA 1Y4ZA 4KO8A 2VUMA 1PPYA 1SFOA 2E2HA 4AONB 2VPZA 5T5MD 1TWHA 3QC8A 1AA6A 5C18A 2Y0SA 3GTMA 1PYQA 2VPXA 2JA6A 2B63A 2EEOB 2JIQA 2E2IA 1PQFA 2WAQA 3CQZA 4D7ZB 4AAYA 2IV2X 3HU1A 1FDOA 4DMRA 4CRYG 3GTPA 3TIWA 2PMZA 3IR5A 1VC3B 5C1BA 1PYUB 1R27A 1PT0A 1CR5A 3IR7A 1S3SA 3QQ7A 2C45A 2KI8A 1R9TA 1DMSA 1QDNA 5FTMA 2PJHB 3GTQA 1IW7D 1QCSA 1G8KA 5FTLA 2NVYA 1R7RA 4KDLA 1PQEA 1E60A 1CZ4A 4CS0A 3QQ8A 1E18A 4GA6A 4KLNA 2JIMA 1KQFA 4AYBA 1SIWA 3OUGA 1TMOA 3PLXB 5DYGA 1E5VA 4KODA 2NVXA 5FTKA 4C2MA 1WCMA 5GLFA 1K83A 3TM7B 1Y1VA 3HU2A 2JIRA 4KDIA 2NAPA 3GTLA 5T5ID 2YU9A 1I50A 1WLFA 1Y1WA
chains in the Genus database with same CATH superfamily
1UHDA 3SUMA 4CRZA 2YUJA 2VPWA 3M3GA 2PNWA 2V3VA 3IR6A 2PI8A 1E61A 2WB1A 3HKZA 2E7ZA 4AOKB 1Y5IA 4JP7A 2O5JD 1AW8B 2DMRA 1TWFA 3O5AA 2R7ZA 1Q16A 3CF2A 3DMRA 3ML1A 1SMYD 4NOHA 5DYIA 2JA7A 1OGYA 2BH0A 2G5DA 3X2LA 1KQGA 4FG2A 1DMRA 1TWCA 3X2KA 5EPPA 5H4UA 1PQHA 5GLXA 1H0HA 1BW3A 1YLEA 2PICA 5B6CA 1G8JA 3SULA 1UHEA 1ZC1A 2V45A 5GM9A 3GTGA 1HD5A 1E32A 3GTOA 1TWGA 4JCWA 2NYAA 4AZDA 4ENGA 1OA7A 1CZ5A 1H5NA 2VPYA 2ENGA 3QWZA 1PT1A 1TWAA 3GTKA 1FDIA 2AE0X 1EU1A 2CW0D 3HU3A 3X2GA 4RV0A 2R93A 4GA5A 1I3QA 3GTJA 1WC2A 3FKIA 4JJOA 3H0GA 2JIOA 1ZYRD 5FTNA 4QIWA 2HCZX 3X2NA 2JIPA 4FFTA 3X2IA 3X2MA 2R92A 2JA5A 5FTJA 1Y4ZA 4KO8A 2VUMA 1PPYA 1SFOA 2E2HA 5GLYA 4AONB 2VPZA 5T5MD 1TWHA 3X2HA 3QC8A 1AA6A 5C18A 1YNJD 2Y0SA 3GTMA 1PYQA 2VPXA 2JA6A 2B63A 4JP6A 2EEOB 2BE5D 2JIQA 2E2IA 1PQFA 4AVRA 2WAQA 3CQZA 4D7ZB 4AAYA 2IV2X 3HU1A 2GAEA 2A6HD 1FDOA 4DMRA 3SUJA 4CRYG 3GTPA 3TIWA 2PMZA 3IR5A 1VC3B 1OA9A 5C1BA 4FG4A 1PYUB 1R27A 3X2PA 1PT0A 1CR5A 3IR7A 1S3SA 3QQ7A 2C45A 2KI8A 1R9TA 1BW4A 1DMSA 1QDNA 5FTMA 2PJHB 3GTQA 1IW7D 1QCSA 1N10A 2G6GA 1G8KA 2PJJA 5FTLA 2NVYA 1R7RA 4KDLA 1PQEA 1YNND 1E60A 1CZ4A 3X2OA 3ENGA 4CS0A 3QQ8A 1E18A 3CZBA 4GA6A 4KLNA 2JIMA 1KQFA 2A6ED 4AYBA 1SIWA 3OUGA 1TMOA 3PLXB 5DYGA 1E5VA 4ZM7A 4KODA 2NVXA 2KQAA 5FTKA 4C2MA 1WCMA 5GLFA 3D30A 1K83A 3TM7B 4JS7A 1Y1VA 3SUKA 2A68D 4FERA 3HU2A 2JIRA 1L8FA 4KDIA 2NAPA 3GTLA 2A69D 4L48A 5T5ID 2YU9A 1I50A 3X2JA 1WLFA 1Y1WA
chains in the Genus database with same CATH topology
1UHDA 4CRZA 2YUJA 2VPWA 2PNWA 2V3VA 3IR6A 2PI8A 1E61A 2WB1A 3HKZA 2E7ZA 4AOKB 1Y5IA 2O5JD 1AW8B 2DMRA 1TWFA 3O5AA 2R7ZA 1Q16A 3CF2A 3DMRA 3ML1A 1SMYD 4NOHA 5DYIA 2JA7A 1OGYA 2G5DA 1KQGA 1DMRA 1TWCA 5EPPA 1PQHA 1H0HA 1YLEA 2PICA 5B6CA 1G8JA 3GTOA 1UHEA 1ZC1A 2V45A 3GTGA 1E32A 1TWGA 2NYAA 4AZDA 1CZ5A 1H5NA 2VPYA 3QWZA 1PT1A 1TWAA 3GTKA 1FDIA 2AE0X 1EU1A 2CW0D 3HU3A 4RV0A 2R93A 4GA5A 1I3QA 3GTJA 3FKIA 3H0GA 2JIOA 1ZYRD 5FTNA 4QIWA 2JIPA 2R92A 2JA5A 5FTJA 1Y4ZA 4KO8A 2VUMA 1PPYA 1SFOA 2E2HA 4AONB 2VPZA 5T5MD 1TWHA 3QC8A 1AA6A 5C18A 1YNJD 2Y0SA 3GTMA 1PYQA 2VPXA 2JA6A 2B63A 2EEOB 2BE5D 2JIQA 2E2IA 1PQFA 2WAQA 3CQZA 4D7ZB 4AAYA 2IV2X 3HU1A 2GAEA 2A6HD 1FDOA 4DMRA 4CRYG 3GTPA 3TIWA 2PMZA 3IR5A 1VC3B 5C1BA 1PYUB 1R27A 1PT0A 1CR5A 3IR7A 1S3SA 3QQ7A 2C45A 2KI8A 1R9TA 1DMSA 1QDNA 5FTMA 2PJHB 3GTQA 1IW7D 1QCSA 2G6GA 1G8KA 2PJJA 5FTLA 2NVYA 1R7RA 4KDLA 1PQEA 1YNND 1E60A 1CZ4A 4CS0A 3QQ8A 1E18A 3CZBA 4GA6A 4KLNA 2JIMA 1KQFA 2A6ED 4AYBA 1SIWA 3OUGA 1TMOA 3PLXB 5DYGA 1E5VA 4KODA 2NVXA 5FTKA 4C2MA 1WCMA 5GLFA 1K83A 3TM7B 1Y1VA 2A68D 3HU2A 2JIRA 4KDIA 2NAPA 3GTLA 2A69D 5T5ID 2YU9A 1I50A 1WLFA 1Y1WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UHD A;  4CRZ A;  2VPW A;  2V3V A;  3IR6 A;  1E61 A;  2WB1 A;  3HKZ A;  2E7Z A;  4AOK B;  1Y5I A;  1AW8 B;  2DMR A;  1TWF A;  3O5A A;  2R7Z A;  1Q16 A;  3CF2 A;  3DMR A;  3ML1 A;  5DYI A;  2JA7 A;  1OGY A;  1KQG A;  1DMR A;  1TWC A;  5EPP A;  1PQH A;  1H0H A;  1YLE A;  5B6C A;  1G8J A;  3GTO A;  1UHE A;  3GTG A;  2V45 A;  1E32 A;  1TWG A;  2NYA A;  4AZD A;  1CZ5 A;  1H5N A;  2VPY A;  3QWZ A;  1PT1 A;  1TWA A;  3GTK A;  1FDI A;  3HU3 A;  1EU1 A;  4RV0 A;  2R93 A;  4GA5 A;  1I3Q A;  3GTJ A;  3FKI A;  3H0G A;  2JIO A;  5FTN A;  4QIW A;  2JIP A;  2R92 A;  2JA5 A;  5FTJ A;  1Y4Z A;  4KO8 A;  2VUM A;  1PPY A;  1SFO A;  2E2H A;  4AON B;  2VPZ A;  5T5M D;  1TWH A;  3QC8 A;  1AA6 A;  5C18 A;  2Y0S A;  3GTM A;  1PYQ A;  2VPX A;  2JA6 A;  2B63 A;  2EEO B;  2JIQ A;  2E2I A;  1PQF A;  2WAQ A;  3CQZ A;  4D7Z B;  4AAY A;  2IV2 X;  3HU1 A;  1FDO A;  4DMR A;  4CRY G;  3GTP A;  3TIW A;  2PMZ A;  3IR5 A;  1VC3 B;  5C1B A;  1PYU B;  1R27 A;  1PT0 A;  1CR5 A;  3IR7 A;  1S3S A;  3QQ7 A;  2C45 A;  2KI8 A;  1R9T A;  1DMS A;  1QDN A;  5FTM A;  2PJH B;  3GTQ A;  1IW7 D;  1QCS A;  1G8K A;  5FTL A;  2NVY A;  1R7R A;  4KDL A;  1PQE A;  1E60 A;  1CZ4 A;  4CS0 A;  3QQ8 A;  1E18 A;  4GA6 A;  4KLN A;  2JIM A;  1KQF A;  4AYB A;  1SIW A;  3OUG A;  1TMO A;  3PLX B;  5DYG A;  1E5V A;  4KOD A;  2NVX A;  5FTK A;  4C2M A;  1WCM A;  5GLF A;  1K83 A;  3TM7 B;  1Y1V A;  3HU2 A;  2JIR A;  4KDI A;  2NAP A;  3GTL A;  5T5I D;  2YU9 A;  1I50 A;  1WLF A;  1Y1W A; 
#chains in the Genus database with same CATH topology
 1UHD A;  3SUM A;  4CRZ A;  2YUJ A;  2VPW A;  3M3G A;  2PNW A;  2V3V A;  3IR6 A;  2PI8 A;  1E61 A;  2WB1 A;  3HKZ A;  2E7Z A;  4AOK B;  1Y5I A;  4JP7 A;  2O5J D;  1AW8 B;  2DMR A;  1TWF A;  3O5A A;  2R7Z A;  1Q16 A;  3CF2 A;  3DMR A;  3ML1 A;  1SMY D;  4NOH A;  5DYI A;  2JA7 A;  1OGY A;  2BH0 A;  2G5D A;  3X2L A;  1KQG A;  4FG2 A;  1DMR A;  1TWC A;  3X2K A;  5EPP A;  5H4U A;  1PQH A;  5GLX A;  1H0H A;  1BW3 A;  1YLE A;  2PIC A;  5B6C A;  1G8J A;  3SUL A;  1UHE A;  1ZC1 A;  2V45 A;  5GM9 A;  3GTG A;  1HD5 A;  1E32 A;  3GTO A;  1TWG A;  4JCW A;  2NYA A;  4AZD A;  4ENG A;  1OA7 A;  1CZ5 A;  1H5N A;  2VPY A;  2ENG A;  3QWZ A;  1PT1 A;  1TWA A;  3GTK A;  1FDI A;  2AE0 X;  1EU1 A;  2CW0 D;  3HU3 A;  3X2G A;  4RV0 A;  2R93 A;  4GA5 A;  1I3Q A;  3GTJ A;  1WC2 A;  3FKI A;  4JJO A;  3H0G A;  2JIO A;  1ZYR D;  5FTN A;  4QIW A;  2HCZ X;  3X2N A;  2JIP A;  4FFT A;  3X2I A;  3X2M A;  2R92 A;  2JA5 A;  5FTJ A;  1Y4Z A;  4KO8 A;  2VUM A;  1PPY A;  1SFO A;  2E2H A;  5GLY A;  4AON B;  2VPZ A;  5T5M D;  1TWH A;  3X2H A;  3QC8 A;  1AA6 A;  5C18 A;  1YNJ D;  2Y0S A;  3GTM A;  1PYQ A;  2VPX A;  2JA6 A;  2B63 A;  4JP6 A;  2EEO B;  2BE5 D;  2JIQ A;  2E2I A;  1PQF A;  4AVR A;  2WAQ A;  3CQZ A;  4D7Z B;  4AAY A;  2IV2 X;  3HU1 A;  2GAE A;  2A6H D;  1FDO A;  4DMR A;  3SUJ A;  4CRY G;  3GTP A;  3TIW A;  2PMZ A;  3IR5 A;  1VC3 B;  1OA9 A;  5C1B A;  4FG4 A;  1PYU B;  1R27 A;  3X2P A;  1PT0 A;  1CR5 A;  3IR7 A;  1S3S A;  3QQ7 A;  2C45 A;  2KI8 A;  1R9T A;  1BW4 A;  1DMS A;  1QDN A;  5FTM A;  2PJH B;  3GTQ A;  1IW7 D;  1QCS A;  1N10 A;  2G6G A;  1G8K A;  2PJJ A;  5FTL A;  2NVY A;  1R7R A;  4KDL A;  1PQE A;  1YNN D;  1E60 A;  1CZ4 A;  3X2O A;  3ENG A;  4CS0 A;  3QQ8 A;  1E18 A;  3CZB A;  4GA6 A;  4KLN A;  2JIM A;  1KQF A;  2A6E D;  4AYB A;  1SIW A;  3OUG A;  1TMO A;  3PLX B;  5DYG A;  1E5V A;  4ZM7 A;  4KOD A;  2NVX A;  2KQA A;  5FTK A;  4C2M A;  1WCM A;  5GLF A;  3D30 A;  1K83 A;  3TM7 B;  4JS7 A;  1Y1V A;  3SUK A;  2A68 D;  4FER A;  3HU2 A;  2JIR A;  1L8F A;  4KDI A;  2NAP A;  3GTL A;  2A69 D;  4L48 A;  5T5I D;  2YU9 A;  1I50 A;  3X2J A;  1WLF A;  1Y1W A; 
#chains in the Genus database with same CATH homology
 1UHD A;  4CRZ A;  2YUJ A;  2VPW A;  2PNW A;  2V3V A;  3IR6 A;  2PI8 A;  1E61 A;  2WB1 A;  3HKZ A;  2E7Z A;  4AOK B;  1Y5I A;  2O5J D;  1AW8 B;  2DMR A;  1TWF A;  3O5A A;  2R7Z A;  1Q16 A;  3CF2 A;  3DMR A;  3ML1 A;  1SMY D;  4NOH A;  5DYI A;  2JA7 A;  1OGY A;  2G5D A;  1KQG A;  1DMR A;  1TWC A;  5EPP A;  1PQH A;  1H0H A;  1YLE A;  2PIC A;  5B6C A;  1G8J A;  3GTO A;  1UHE A;  1ZC1 A;  2V45 A;  3GTG A;  1E32 A;  1TWG A;  2NYA A;  4AZD A;  1CZ5 A;  1H5N A;  2VPY A;  3QWZ A;  1PT1 A;  1TWA A;  3GTK A;  1FDI A;  2AE0 X;  1EU1 A;  2CW0 D;  3HU3 A;  4RV0 A;  2R93 A;  4GA5 A;  1I3Q A;  3GTJ A;  3FKI A;  3H0G A;  2JIO A;  1ZYR D;  5FTN A;  4QIW A;  2JIP A;  2R92 A;  2JA5 A;  5FTJ A;  1Y4Z A;  4KO8 A;  2VUM A;  1PPY A;  1SFO A;  2E2H A;  4AON B;  2VPZ A;  5T5M D;  1TWH A;  3QC8 A;  1AA6 A;  5C18 A;  1YNJ D;  2Y0S A;  3GTM A;  1PYQ A;  2VPX A;  2JA6 A;  2B63 A;  2EEO B;  2BE5 D;  2JIQ A;  2E2I A;  1PQF A;  2WAQ A;  3CQZ A;  4D7Z B;  4AAY A;  2IV2 X;  3HU1 A;  2GAE A;  2A6H D;  1FDO A;  4DMR A;  4CRY G;  3GTP A;  3TIW A;  2PMZ A;  3IR5 A;  1VC3 B;  5C1B A;  1PYU B;  1R27 A;  1PT0 A;  1CR5 A;  3IR7 A;  1S3S A;  3QQ7 A;  2C45 A;  2KI8 A;  1R9T A;  1DMS A;  1QDN A;  5FTM A;  2PJH B;  3GTQ A;  1IW7 D;  1QCS A;  2G6G A;  1G8K A;  2PJJ A;  5FTL A;  2NVY A;  1R7R A;  4KDL A;  1PQE A;  1YNN D;  1E60 A;  1CZ4 A;  4CS0 A;  3QQ8 A;  1E18 A;  3CZB A;  4GA6 A;  4KLN A;  2JIM A;  1KQF A;  2A6E D;  4AYB A;  1SIW A;  3OUG A;  1TMO A;  3PLX B;  5DYG A;  1E5V A;  4KOD A;  2NVX A;  5FTK A;  4C2M A;  1WCM A;  5GLF A;  1K83 A;  3TM7 B;  1Y1V A;  2A68 D;  3HU2 A;  2JIR A;  4KDI A;  2NAP A;  3GTL A;  2A69 D;  5T5I D;  2YU9 A;  1I50 A;  1WLF A;  1Y1W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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