1PQFA

Glycine 24 to serine mutation of aspartate decarboxylase
Total Genus 35
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
127
structure length
126
Chain Sequence
PRGSMIRTMLQGKLHRVKVTHADLHYESSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTAKAIPV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
source organism Escherichia coli
molecule tags Lyase
molecule keywords Aspartate 1-decarboxylase
total genus 35
structure length 126
sequence length 127
chains with identical sequence B
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-06-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1pqfA00
4GA5A 1I50A 1I3QA 2YU9A 4KDLA 1EU1A 5FTMA 2R7ZA 1TWAA 3ML1A 3PLXB 3QC8A 1Q16A 2PMZA 2IV2X 1E18A 3H0GA 1SFOA 3GTMA 3OUGA 4C2MA 1YLEA 1R9TA 1QDNA 3DMRA 3GTQA 5FTNA 1H5NA 5GLFA 5FTJA 4D7ZB 2JIMA 2DMRA 1AA6A 2NYAA 1E60A 4KO8A 2R93A 3IR6A 4KLNA 1CZ4A 2C45A 1TWGA 4CRYG 1VC3B 1S3SA 2E2HA 3HU3A 1DMRA 2JIPA 1UHDA 1E61A 2EEOB 1Y1WA 3QQ7A 1R7RA 2Y0SA 1Y1VA 3TM7B 3QQ8A 3HU2A 4AOKB 2JIQA 2PJHB 3CQZA 1IW7D 4CS0A 1K83A 1G8KA 1E5VA 1PYQA 1OGYA 3IR7A 3IR5A 1KQFA 2JA7A 2WB1A 1PQEA 5FTLA 5C18A 3GTOA 5DYGA 3GTLA 1FDOA 2V3VA 1R27A 3GTGA 5C1BA 1QCSA 2R92A 4AYBA 3GTJA 1KQGA 3HU1A 2KI8A 1Y4ZA 1Y5IA 5T5MD 1AW8B 5T5ID 5DYIA 2NAPA 4QIWA 1PYUB 2NVXA 4AONB 1PPYA 2JA6A 1TWHA 1PQHA 3TIWA 1TWFA 4GA6A 5FTKA 1TWCA 2VPXA 4KODA 2V45A 2B63A 4AZDA 2NVYA 3GTPA 1CR5A 3CF2A 4DMRA 1TMOA 2VUMA 1UHEA 2VPZA 2WAQA 3GTKA 5EPPA 1DMSA 2E2IA 2JIRA 2VPWA 1G8JA 1E32A 4AAYA 4KDIA 1WLFA 2JA5A 4RV0A 2E7ZA 5B6CA 1PQFA 2VPYA 3HKZA 3FKIA 1PT1A 3O5AA 1WCMA 1CZ5A 1SIWA 3QWZA 4CRZA 1FDIA 2JIOA 1H0HA 1PT0A
chains in the Genus database with same CATH superfamily
4GA5A 1I50A 1I3QA 2YU9A 1WC2A 1EU1A 4KDLA 5FTMA 2R7ZA 1TWAA 3ML1A 3PLXB 3QC8A 1Q16A 2PMZA 2PICA 2IV2X 1E18A 3H0GA 1SFOA 3GTMA 3OUGA 4C2MA 1YLEA 4NOHA 1R9TA 1QDNA 3DMRA 3X2MA 3GTQA 5FTNA 1H5NA 5GLFA 3X2GA 5FTJA 2CW0D 4D7ZB 2G6GA 2JIMA 2DMRA 1AA6A 2NYAA 1E60A 4KO8A 1HD5A 2R93A 3IR6A 4KLNA 1CZ4A 2C45A 1TWGA 4JJOA 4FG4A 5GLXA 4CRYG 1VC3B 1S3SA 4FG2A 2E2HA 3HU3A 1OA7A 1DMRA 2JIPA 2A68D 1UHDA 3X2LA 1E61A 2EEOB 1L8FA 3SULA 1Y1WA 3QQ7A 3X2HA 1R7RA 2Y0SA 1ZC1A 1Y1VA 2GAEA 3HU2A 3QQ8A 2JIQA 2PJHB 3TM7B 4AOKB 3CQZA 1IW7D 4CS0A 2AE0X 4FFTA 1K83A 1G8KA 2PI8A 1E5VA 1YNJD 4ENGA 1PYQA 1OGYA 3IR7A 3SUJA 3IR5A 1KQFA 2JA7A 2A6ED 1PQEA 2WB1A 5C18A 5FTLA 5DYGA 3GTOA 3GTLA 3CZBA 1OA9A 1FDOA 2V3VA 3X2NA 4JCWA 1R27A 3GTGA 5C1BA 1QCSA 2R92A 4AYBA 3GTJA 1KQGA 3HU1A 2KI8A 1Y4ZA 1Y5IA 2YUJA 5T5MD 1AW8B 5T5ID 2O5JD 5DYIA 2NAPA 4QIWA 1PYUB 3X2OA 2NVXA 4AONB 1PPYA 2JA6A 1TWHA 1PQHA 2G5DA 4JP6A 3TIWA 1TWFA 4FERA 4GA6A 4L48A 3X2JA 5FTKA 1TWCA 4JP7A 2PJJA 2VPXA 4KODA 5H4UA 5GLYA 2V45A 2B63A 4AZDA 2NVYA 2HCZX 3X2PA 1CR5A 3GTPA 3D30A 3CF2A 4DMRA 1TMOA 3M3GA 2PNWA 2VUMA 1UHEA 1SMYD 2VPZA 2WAQA 3GTKA 2BH0A 1DMSA 5EPPA 2E2IA 2JIRA 2VPWA 3SUMA 1BW3A 1G8JA 1E32A 4AAYA 3X2IA 4KDIA 1WLFA 2JA5A 2KQAA 4AVRA 4RV0A 3SUKA 1ZYRD 2A69D 2E7ZA 5B6CA 1PQFA 1YNND 2VPYA 3ENGA 3HKZA 1N10A 2BE5D 3X2KA 2ENGA 2A6HD 3FKIA 1PT1A 3O5AA 1BW4A 1WCMA 1CZ5A 5GM9A 1SIWA 3QWZA 4JS7A 4CRZA 1FDIA 2JIOA 1H0HA 4ZM7A 1PT0A
chains in the Genus database with same CATH topology
4GA5A 1I50A 1I3QA 2YU9A 4KDLA 1EU1A 5FTMA 2R7ZA 1TWAA 3ML1A 3PLXB 3QC8A 1Q16A 2PMZA 2PICA 2IV2X 1E18A 3H0GA 1SFOA 3GTMA 3OUGA 4C2MA 1YLEA 4NOHA 1R9TA 1QDNA 3DMRA 3GTQA 5FTNA 1H5NA 5GLFA 5FTJA 2CW0D 4D7ZB 2G6GA 2JIMA 2DMRA 1AA6A 2NYAA 1E60A 4KO8A 2R93A 3IR6A 4KLNA 1CZ4A 2C45A 1TWGA 4CRYG 1VC3B 1S3SA 2E2HA 3HU3A 1DMRA 2JIPA 2A68D 1UHDA 1E61A 2EEOB 1Y1WA 3QQ7A 1R7RA 2Y0SA 1ZC1A 1Y1VA 2GAEA 3HU2A 3QQ8A 2JIQA 2PJHB 3TM7B 4AOKB 3CQZA 1IW7D 4CS0A 2AE0X 1K83A 1G8KA 2PI8A 1E5VA 1YNJD 1PYQA 1OGYA 3IR7A 3IR5A 1KQFA 2JA7A 2A6ED 1PQEA 2WB1A 5C18A 5FTLA 5DYGA 3GTOA 3GTLA 3CZBA 1FDOA 2V3VA 1R27A 3GTGA 5C1BA 1QCSA 2R92A 4AYBA 3GTJA 1KQGA 3HU1A 2KI8A 1Y4ZA 1Y5IA 2YUJA 5T5MD 1AW8B 5T5ID 2O5JD 5DYIA 2NAPA 4QIWA 1PYUB 2NVXA 4AONB 1PPYA 2JA6A 1TWHA 1PQHA 2G5DA 3TIWA 1TWFA 4GA6A 5FTKA 1TWCA 2PJJA 2VPXA 4KODA 2V45A 2B63A 4AZDA 2NVYA 3GTPA 1CR5A 3CF2A 4DMRA 1TMOA 2PNWA 2VUMA 1UHEA 1SMYD 2VPZA 2WAQA 3GTKA 5EPPA 1DMSA 2E2IA 2JIRA 2VPWA 1G8JA 1E32A 4AAYA 4KDIA 1WLFA 2JA5A 4RV0A 1ZYRD 2A69D 2E7ZA 5B6CA 1PQFA 1YNND 2VPYA 3HKZA 2BE5D 3FKIA 2A6HD 1PT1A 3O5AA 1WCMA 1CZ5A 1SIWA 3QWZA 4CRZA 1FDIA 2JIOA 1H0HA 1PT0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GA5 A;  1I50 A;  1I3Q A;  2YU9 A;  4KDL A;  1EU1 A;  5FTM A;  2R7Z A;  1TWA A;  3ML1 A;  3PLX B;  3QC8 A;  1Q16 A;  2PMZ A;  2IV2 X;  1E18 A;  3H0G A;  1SFO A;  3GTM A;  3OUG A;  4C2M A;  1YLE A;  1R9T A;  1QDN A;  3DMR A;  3GTQ A;  5FTN A;  1H5N A;  5GLF A;  5FTJ A;  4D7Z B;  2JIM A;  2DMR A;  1AA6 A;  2NYA A;  1E60 A;  4KO8 A;  2R93 A;  3IR6 A;  4KLN A;  1CZ4 A;  2C45 A;  1TWG A;  4CRY G;  1VC3 B;  1S3S A;  2E2H A;  3HU3 A;  1DMR A;  2JIP A;  1UHD A;  1E61 A;  2EEO B;  1Y1W A;  3QQ7 A;  1R7R A;  2Y0S A;  1Y1V A;  3TM7 B;  3QQ8 A;  3HU2 A;  4AOK B;  2JIQ A;  2PJH B;  3CQZ A;  1IW7 D;  4CS0 A;  1K83 A;  1G8K A;  1E5V A;  1PYQ A;  1OGY A;  3IR7 A;  3IR5 A;  1KQF A;  2JA7 A;  2WB1 A;  1PQE A;  5FTL A;  5C18 A;  3GTO A;  5DYG A;  3GTL A;  1FDO A;  2V3V A;  1R27 A;  3GTG A;  5C1B A;  1QCS A;  2R92 A;  4AYB A;  3GTJ A;  1KQG A;  3HU1 A;  2KI8 A;  1Y4Z A;  1Y5I A;  5T5M D;  1AW8 B;  5T5I D;  5DYI A;  2NAP A;  4QIW A;  1PYU B;  2NVX A;  4AON B;  1PPY A;  2JA6 A;  1TWH A;  1PQH A;  3TIW A;  1TWF A;  4GA6 A;  5FTK A;  1TWC A;  2VPX A;  4KOD A;  2V45 A;  2B63 A;  4AZD A;  2NVY A;  3GTP A;  1CR5 A;  3CF2 A;  4DMR A;  1TMO A;  2VUM A;  1UHE A;  2VPZ A;  2WAQ A;  3GTK A;  5EPP A;  1DMS A;  2E2I A;  2JIR A;  2VPW A;  1G8J A;  1E32 A;  4AAY A;  4KDI A;  1WLF A;  2JA5 A;  4RV0 A;  2E7Z A;  5B6C A;  1PQF A;  2VPY A;  3HKZ A;  3FKI A;  1PT1 A;  3O5A A;  1WCM A;  1CZ5 A;  1SIW A;  3QWZ A;  4CRZ A;  1FDI A;  2JIO A;  1H0H A;  1PT0 A; 
#chains in the Genus database with same CATH topology
 4GA5 A;  1I50 A;  1I3Q A;  2YU9 A;  1WC2 A;  1EU1 A;  4KDL A;  5FTM A;  2R7Z A;  1TWA A;  3ML1 A;  3PLX B;  3QC8 A;  1Q16 A;  2PMZ A;  2PIC A;  2IV2 X;  1E18 A;  3H0G A;  1SFO A;  3GTM A;  3OUG A;  4C2M A;  1YLE A;  4NOH A;  1R9T A;  1QDN A;  3DMR A;  3X2M A;  3GTQ A;  5FTN A;  1H5N A;  5GLF A;  3X2G A;  5FTJ A;  2CW0 D;  4D7Z B;  2G6G A;  2JIM A;  2DMR A;  1AA6 A;  2NYA A;  1E60 A;  4KO8 A;  1HD5 A;  2R93 A;  3IR6 A;  4KLN A;  1CZ4 A;  2C45 A;  1TWG A;  4JJO A;  4FG4 A;  5GLX A;  4CRY G;  1VC3 B;  1S3S A;  4FG2 A;  2E2H A;  3HU3 A;  1OA7 A;  1DMR A;  2JIP A;  2A68 D;  1UHD A;  3X2L A;  1E61 A;  2EEO B;  1L8F A;  3SUL A;  1Y1W A;  3QQ7 A;  3X2H A;  1R7R A;  2Y0S A;  1ZC1 A;  1Y1V A;  2GAE A;  3HU2 A;  3QQ8 A;  2JIQ A;  2PJH B;  3TM7 B;  4AOK B;  3CQZ A;  1IW7 D;  4CS0 A;  2AE0 X;  4FFT A;  1K83 A;  1G8K A;  2PI8 A;  1E5V A;  1YNJ D;  4ENG A;  1PYQ A;  1OGY A;  3IR7 A;  3SUJ A;  3IR5 A;  1KQF A;  2JA7 A;  2A6E D;  1PQE A;  2WB1 A;  5C18 A;  5FTL A;  5DYG A;  3GTO A;  3GTL A;  3CZB A;  1OA9 A;  1FDO A;  2V3V A;  3X2N A;  4JCW A;  1R27 A;  3GTG A;  5C1B A;  1QCS A;  2R92 A;  4AYB A;  3GTJ A;  1KQG A;  3HU1 A;  2KI8 A;  1Y4Z A;  1Y5I A;  2YUJ A;  5T5M D;  1AW8 B;  5T5I D;  2O5J D;  5DYI A;  2NAP A;  4QIW A;  1PYU B;  3X2O A;  2NVX A;  4AON B;  1PPY A;  2JA6 A;  1TWH A;  1PQH A;  2G5D A;  4JP6 A;  3TIW A;  1TWF A;  4FER A;  4GA6 A;  4L48 A;  3X2J A;  5FTK A;  1TWC A;  4JP7 A;  2PJJ A;  2VPX A;  4KOD A;  5H4U A;  5GLY A;  2V45 A;  2B63 A;  4AZD A;  2NVY A;  2HCZ X;  3X2P A;  1CR5 A;  3GTP A;  3D30 A;  3CF2 A;  4DMR A;  1TMO A;  3M3G A;  2PNW A;  2VUM A;  1UHE A;  1SMY D;  2VPZ A;  2WAQ A;  3GTK A;  2BH0 A;  1DMS A;  5EPP A;  2E2I A;  2JIR A;  2VPW A;  3SUM A;  1BW3 A;  1G8J A;  1E32 A;  4AAY A;  3X2I A;  4KDI A;  1WLF A;  2JA5 A;  2KQA A;  4AVR A;  4RV0 A;  3SUK A;  1ZYR D;  2A69 D;  2E7Z A;  5B6C A;  1PQF A;  1YNN D;  2VPY A;  3ENG A;  3HKZ A;  1N10 A;  2BE5 D;  3X2K A;  2ENG A;  2A6H D;  3FKI A;  1PT1 A;  3O5A A;  1BW4 A;  1WCM A;  1CZ5 A;  5GM9 A;  1SIW A;  3QWZ A;  4JS7 A;  4CRZ A;  1FDI A;  2JIO A;  1H0H A;  4ZM7 A;  1PT0 A; 
#chains in the Genus database with same CATH homology
 4GA5 A;  1I50 A;  1I3Q A;  2YU9 A;  4KDL A;  1EU1 A;  5FTM A;  2R7Z A;  1TWA A;  3ML1 A;  3PLX B;  3QC8 A;  1Q16 A;  2PMZ A;  2PIC A;  2IV2 X;  1E18 A;  3H0G A;  1SFO A;  3GTM A;  3OUG A;  4C2M A;  1YLE A;  4NOH A;  1R9T A;  1QDN A;  3DMR A;  3GTQ A;  5FTN A;  1H5N A;  5GLF A;  5FTJ A;  2CW0 D;  4D7Z B;  2G6G A;  2JIM A;  2DMR A;  1AA6 A;  2NYA A;  1E60 A;  4KO8 A;  2R93 A;  3IR6 A;  4KLN A;  1CZ4 A;  2C45 A;  1TWG A;  4CRY G;  1VC3 B;  1S3S A;  2E2H A;  3HU3 A;  1DMR A;  2JIP A;  2A68 D;  1UHD A;  1E61 A;  2EEO B;  1Y1W A;  3QQ7 A;  1R7R A;  2Y0S A;  1ZC1 A;  1Y1V A;  2GAE A;  3HU2 A;  3QQ8 A;  2JIQ A;  2PJH B;  3TM7 B;  4AOK B;  3CQZ A;  1IW7 D;  4CS0 A;  2AE0 X;  1K83 A;  1G8K A;  2PI8 A;  1E5V A;  1YNJ D;  1PYQ A;  1OGY A;  3IR7 A;  3IR5 A;  1KQF A;  2JA7 A;  2A6E D;  1PQE A;  2WB1 A;  5C18 A;  5FTL A;  5DYG A;  3GTO A;  3GTL A;  3CZB A;  1FDO A;  2V3V A;  1R27 A;  3GTG A;  5C1B A;  1QCS A;  2R92 A;  4AYB A;  3GTJ A;  1KQG A;  3HU1 A;  2KI8 A;  1Y4Z A;  1Y5I A;  2YUJ A;  5T5M D;  1AW8 B;  5T5I D;  2O5J D;  5DYI A;  2NAP A;  4QIW A;  1PYU B;  2NVX A;  4AON B;  1PPY A;  2JA6 A;  1TWH A;  1PQH A;  2G5D A;  3TIW A;  1TWF A;  4GA6 A;  5FTK A;  1TWC A;  2PJJ A;  2VPX A;  4KOD A;  2V45 A;  2B63 A;  4AZD A;  2NVY A;  3GTP A;  1CR5 A;  3CF2 A;  4DMR A;  1TMO A;  2PNW A;  2VUM A;  1UHE A;  1SMY D;  2VPZ A;  2WAQ A;  3GTK A;  5EPP A;  1DMS A;  2E2I A;  2JIR A;  2VPW A;  1G8J A;  1E32 A;  4AAY A;  4KDI A;  1WLF A;  2JA5 A;  4RV0 A;  1ZYR D;  2A69 D;  2E7Z A;  5B6C A;  1PQF A;  1YNN D;  2VPY A;  3HKZ A;  2BE5 D;  3FKI A;  2A6H D;  1PT1 A;  3O5A A;  1WCM A;  1CZ5 A;  1SIW A;  3QWZ A;  4CRZ A;  1FDI A;  2JIO A;  1H0H A;  1PT0 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...