3PLXB

The crystal structure of aspartate alpha-decarboxylase from campylobacter jejuni subsp. jejuni nctc 11168
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
100
structure length
100
Chain Sequence
ISIDEKLLQASGILEYEKVQVVNVNNGARFETYTIATQEEGVVCLNGAAARLAEVGDKVIIMSYADFNEEEAKTFKPKVVFVDENNTATKITNYEKHGAI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Aspartate 1-decarboxylase
publication title The crystal structure of aspartate alpha-decarboxylase from Campylobacter jejuni subsp. jejuni NCTC 11168
rcsb
source organism Campylobacter jejuni subsp. jejuni
total genus 19
structure length 100
sequence length 100
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2010-11-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 3plxB00
1H5NA 2JIQA 1E5VA 2JIOA 1R9TA 1Y5IA 5DYGA 2R92A 3FKIA 5B6CA 1UHDA 2VPYA 5DYIA 2VPXA 2R7ZA 1CZ5A 1EU1A 1TWCA 5FTNA 1CZ4A 1KQFA 3ML1A 1G8KA 4KODA 1DMRA 4KDLA 3QQ8A 1FDOA 3CQZA 3IR5A 3H0GA 1PPYA 4AAYA 1OGYA 1Y4ZA 1IW7D 3QWZA 4RV0A 4D7ZB 2JIRA 2R93A 4AYBA 2WB1A 1PQFA 1QDNA 1PYUB 2JA7A 1S3SA 1TMOA 3GTGA 1R7RA 3GTQA 5FTMA 3DMRA 1PQHA 4KLNA 3OUGA 1WLFA 3HKZA 3HU1A 4KDIA 1TWFA 5T5MD 4AONB 4AZDA 1QCSA 3TIWA 3GTKA 2IV2X 2E2HA 2YU9A 3GTPA 1PT0A 1AW8B 1E18A 5GLFA 1SFOA 3IR7A 2KI8A 2C45A 3QQ7A 1PQEA 5C18A 3GTOA 2VUMA 5EPPA 5FTKA 2NVXA 3O5AA 2E2IA 1Q16A 1YLEA 3GTMA 1PYQA 1FDIA 2VPZA 4GA5A 2JIMA 4GA6A 1E32A 4CS0A 1E61A 1DMSA 2NVYA 4AOKB 1R27A 1WCMA 2JA6A 1I3QA 2V3VA 3GTLA 3HU2A 1E60A 3IR6A 2VPWA 1TWGA 4DMRA 3HU3A 2V45A 1Y1WA 2E7ZA 1KQGA 1TWAA 2B63A 3CF2A 2PJHB 1SIWA 2Y0SA 1TWHA 3QC8A 4CRYG 4C2MA 1UHEA 1VC3B 3PLXB 2DMRA 2EEOB 4CRZA 5FTLA 1K83A 1G8JA 5C1BA 5T5ID 2NYAA 4KO8A 3TM7B 1CR5A 1I50A 2NAPA 2JA5A 1AA6A 2JIPA 5FTJA 1PT1A 1Y1VA 3GTJA 2WAQA 4QIWA 1H0HA 2PMZA
chains in the Genus database with same CATH superfamily
2KQAA 1H5NA 2JIQA 1E5VA 3SULA 1OA7A 2JIOA 1R9TA 1Y5IA 4JP6A 5DYGA 3X2HA 5GM9A 2R92A 5GLXA 3FKIA 5B6CA 1UHDA 2VPYA 5DYIA 2VPXA 2R7ZA 1CZ5A 1EU1A 4AVRA 2YUJA 1TWCA 2A68D 1CZ4A 2BE5D 5FTNA 3ENGA 1KQFA 3ML1A 1G8KA 4KODA 1DMRA 4KDLA 3QQ8A 1FDOA 3CQZA 3IR5A 4L48A 4NOHA 3H0GA 5H4UA 1PPYA 4AAYA 3X2KA 1OGYA 1Y4ZA 1IW7D 3QWZA 1YNND 4RV0A 4D7ZB 2JIRA 2R93A 4AYBA 2A6ED 2WB1A 1PQFA 1QDNA 3D30A 1PYUB 2JA7A 1S3SA 3X2PA 1TMOA 3GTGA 1OA9A 1R7RA 3GTQA 5FTMA 3DMRA 1PQHA 4KLNA 3OUGA 1ZYRD 1BW4A 1WLFA 3HKZA 3HU1A 4KDIA 1TWFA 2AE0X 2A6HD 5T5MD 4AONB 4AZDA 4FG2A 1QCSA 3TIWA 2PJJA 3X2OA 2IV2X 3GTKA 2YU9A 3GTPA 2E2HA 4JP7A 3SUMA 1PT0A 1AW8B 1E18A 1SMYD 2HCZX 5GLFA 1SFOA 3IR7A 2KI8A 2C45A 3QQ7A 1PQEA 2GAEA 3X2LA 4FERA 4ZM7A 2ENGA 5C18A 3X2IA 1WC2A 3GTOA 2VUMA 2G6GA 5EPPA 5FTKA 1BW3A 5GLYA 3X2GA 3O5AA 2NVXA 2E2IA 3SUJA 1Q16A 1YLEA 2CW0D 3X2NA 3GTMA 3CZBA 1PYQA 1FDIA 2VPZA 4JJOA 4GA5A 2JIMA 4GA6A 1E32A 4CS0A 1E61A 1DMSA 2NVYA 4AOKB 1R27A 1WCMA 2PICA 2JA6A 1I3QA 2PI8A 4JCWA 2V3VA 3GTLA 2O5JD 2PNWA 3HU2A 1E60A 3IR6A 2VPWA 1TWGA 2A69D 3X2JA 4DMRA 2BH0A 3HU3A 4FG4A 2V45A 1Y1WA 1YNJD 1ZC1A 1N10A 2E7ZA 1KQGA 4ENGA 1TWAA 2B63A 3CF2A 2PJHB 4FFTA 1SIWA 2Y0SA 1TWHA 3QC8A 4CRYG 4C2MA 1UHEA 1VC3B 3M3GA 3PLXB 2DMRA 2EEOB 4CRZA 5FTLA 1K83A 1G8JA 5C1BA 2G5DA 1L8FA 5T5ID 2NYAA 4KO8A 3TM7B 1CR5A 1I50A 2NAPA 2JA5A 3SUKA 3X2MA 2JIPA 4JS7A 1AA6A 5FTJA 1HD5A 1PT1A 1Y1VA 3GTJA 2WAQA 4QIWA 1H0HA 2PMZA
chains in the Genus database with same CATH topology
1H5NA 2JIQA 1E5VA 2JIOA 1R9TA 1Y5IA 5DYGA 2R92A 3FKIA 5B6CA 1UHDA 2VPYA 5DYIA 2VPXA 2R7ZA 1CZ5A 1EU1A 2YUJA 1TWCA 2A68D 1CZ4A 2BE5D 5FTNA 1KQFA 3ML1A 1G8KA 4KODA 1DMRA 4KDLA 3QQ8A 1FDOA 3CQZA 3IR5A 4NOHA 3H0GA 1PPYA 4AAYA 1OGYA 1Y4ZA 1IW7D 3QWZA 1YNND 4RV0A 4D7ZB 2JIRA 2R93A 4AYBA 2A6ED 2WB1A 1PQFA 1QDNA 1PYUB 2JA7A 1S3SA 1TMOA 3GTGA 1R7RA 3GTQA 5FTMA 3DMRA 1PQHA 4KLNA 3OUGA 1ZYRD 1WLFA 3HKZA 3HU1A 4KDIA 1TWFA 2AE0X 2A6HD 5T5MD 4AONB 4AZDA 1QCSA 3TIWA 2PJJA 3GTKA 2IV2X 2E2HA 2YU9A 3GTPA 1PT0A 1AW8B 1E18A 1SMYD 5GLFA 1SFOA 3IR7A 2KI8A 2C45A 3QQ7A 1PQEA 2GAEA 5C18A 3GTOA 2VUMA 2G6GA 5EPPA 5FTKA 2NVXA 3O5AA 2E2IA 1Q16A 1YLEA 2CW0D 3GTMA 3CZBA 1PYQA 1FDIA 2VPZA 4GA5A 2JIMA 4GA6A 1E32A 4CS0A 1E61A 1DMSA 2NVYA 4AOKB 1R27A 1WCMA 2PICA 2JA6A 1I3QA 2PI8A 2V3VA 3GTLA 2O5JD 2PNWA 3HU2A 1E60A 3IR6A 2VPWA 1TWGA 2A69D 4DMRA 3HU3A 2V45A 1Y1WA 1YNJD 1ZC1A 2E7ZA 1KQGA 1TWAA 2B63A 3CF2A 2PJHB 1SIWA 2Y0SA 1TWHA 3QC8A 4CRYG 4C2MA 1UHEA 1VC3B 3PLXB 2DMRA 2EEOB 4CRZA 5FTLA 1K83A 1G8JA 5C1BA 2G5DA 5T5ID 2NYAA 4KO8A 3TM7B 1CR5A 1I50A 2NAPA 2JA5A 1AA6A 2JIPA 5FTJA 1PT1A 1Y1VA 3GTJA 2WAQA 4QIWA 1H0HA 2PMZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1H5N A;  2JIQ A;  1E5V A;  2JIO A;  1R9T A;  1Y5I A;  5DYG A;  2R92 A;  3FKI A;  5B6C A;  1UHD A;  2VPY A;  5DYI A;  2VPX A;  2R7Z A;  1CZ5 A;  1EU1 A;  1TWC A;  5FTN A;  1CZ4 A;  1KQF A;  3ML1 A;  1G8K A;  4KOD A;  1DMR A;  4KDL A;  3QQ8 A;  1FDO A;  3CQZ A;  3IR5 A;  3H0G A;  1PPY A;  4AAY A;  1OGY A;  1Y4Z A;  1IW7 D;  3QWZ A;  4RV0 A;  4D7Z B;  2JIR A;  2R93 A;  4AYB A;  2WB1 A;  1PQF A;  1QDN A;  1PYU B;  2JA7 A;  1S3S A;  1TMO A;  3GTG A;  1R7R A;  3GTQ A;  5FTM A;  3DMR A;  1PQH A;  4KLN A;  3OUG A;  1WLF A;  3HKZ A;  3HU1 A;  4KDI A;  1TWF A;  5T5M D;  4AON B;  4AZD A;  1QCS A;  3TIW A;  3GTK A;  2IV2 X;  2E2H A;  2YU9 A;  3GTP A;  1PT0 A;  1AW8 B;  1E18 A;  5GLF A;  1SFO A;  3IR7 A;  2KI8 A;  2C45 A;  3QQ7 A;  1PQE A;  5C18 A;  3GTO A;  2VUM A;  5EPP A;  5FTK A;  2NVX A;  3O5A A;  2E2I A;  1Q16 A;  1YLE A;  3GTM A;  1PYQ A;  1FDI A;  2VPZ A;  4GA5 A;  2JIM A;  4GA6 A;  1E32 A;  4CS0 A;  1E61 A;  1DMS A;  2NVY A;  4AOK B;  1R27 A;  1WCM A;  2JA6 A;  1I3Q A;  2V3V A;  3GTL A;  3HU2 A;  1E60 A;  3IR6 A;  2VPW A;  1TWG A;  4DMR A;  3HU3 A;  2V45 A;  1Y1W A;  2E7Z A;  1KQG A;  1TWA A;  2B63 A;  3CF2 A;  2PJH B;  1SIW A;  2Y0S A;  1TWH A;  3QC8 A;  4CRY G;  4C2M A;  1UHE A;  1VC3 B;  3PLX B;  2DMR A;  2EEO B;  4CRZ A;  5FTL A;  1K83 A;  1G8J A;  5C1B A;  5T5I D;  2NYA A;  4KO8 A;  3TM7 B;  1CR5 A;  1I50 A;  2NAP A;  2JA5 A;  1AA6 A;  2JIP A;  5FTJ A;  1PT1 A;  1Y1V A;  3GTJ A;  2WAQ A;  4QIW A;  1H0H A;  2PMZ A; 
#chains in the Genus database with same CATH topology
 2KQA A;  1H5N A;  2JIQ A;  1E5V A;  3SUL A;  1OA7 A;  2JIO A;  1R9T A;  1Y5I A;  4JP6 A;  5DYG A;  3X2H A;  5GM9 A;  2R92 A;  5GLX A;  3FKI A;  5B6C A;  1UHD A;  2VPY A;  5DYI A;  2VPX A;  2R7Z A;  1CZ5 A;  1EU1 A;  4AVR A;  2YUJ A;  1TWC A;  2A68 D;  1CZ4 A;  2BE5 D;  5FTN A;  3ENG A;  1KQF A;  3ML1 A;  1G8K A;  4KOD A;  1DMR A;  4KDL A;  3QQ8 A;  1FDO A;  3CQZ A;  3IR5 A;  4L48 A;  4NOH A;  3H0G A;  5H4U A;  1PPY A;  4AAY A;  3X2K A;  1OGY A;  1Y4Z A;  1IW7 D;  3QWZ A;  1YNN D;  4RV0 A;  4D7Z B;  2JIR A;  2R93 A;  4AYB A;  2A6E D;  2WB1 A;  1PQF A;  1QDN A;  3D30 A;  1PYU B;  2JA7 A;  1S3S A;  3X2P A;  1TMO A;  3GTG A;  1OA9 A;  1R7R A;  3GTQ A;  5FTM A;  3DMR A;  1PQH A;  4KLN A;  3OUG A;  1ZYR D;  1BW4 A;  1WLF A;  3HKZ A;  3HU1 A;  4KDI A;  1TWF A;  2AE0 X;  2A6H D;  5T5M D;  4AON B;  4AZD A;  4FG2 A;  1QCS A;  3TIW A;  2PJJ A;  3X2O A;  2IV2 X;  3GTK A;  2YU9 A;  3GTP A;  2E2H A;  4JP7 A;  3SUM A;  1PT0 A;  1AW8 B;  1E18 A;  1SMY D;  2HCZ X;  5GLF A;  1SFO A;  3IR7 A;  2KI8 A;  2C45 A;  3QQ7 A;  1PQE A;  2GAE A;  3X2L A;  4FER A;  4ZM7 A;  2ENG A;  5C18 A;  3X2I A;  1WC2 A;  3GTO A;  2VUM A;  2G6G A;  5EPP A;  5FTK A;  1BW3 A;  5GLY A;  3X2G A;  3O5A A;  2NVX A;  2E2I A;  3SUJ A;  1Q16 A;  1YLE A;  2CW0 D;  3X2N A;  3GTM A;  3CZB A;  1PYQ A;  1FDI A;  2VPZ A;  4JJO A;  4GA5 A;  2JIM A;  4GA6 A;  1E32 A;  4CS0 A;  1E61 A;  1DMS A;  2NVY A;  4AOK B;  1R27 A;  1WCM A;  2PIC A;  2JA6 A;  1I3Q A;  2PI8 A;  4JCW A;  2V3V A;  3GTL A;  2O5J D;  2PNW A;  3HU2 A;  1E60 A;  3IR6 A;  2VPW A;  1TWG A;  2A69 D;  3X2J A;  4DMR A;  2BH0 A;  3HU3 A;  4FG4 A;  2V45 A;  1Y1W A;  1YNJ D;  1ZC1 A;  1N10 A;  2E7Z A;  1KQG A;  4ENG A;  1TWA A;  2B63 A;  3CF2 A;  2PJH B;  4FFT A;  1SIW A;  2Y0S A;  1TWH A;  3QC8 A;  4CRY G;  4C2M A;  1UHE A;  1VC3 B;  3M3G A;  3PLX B;  2DMR A;  2EEO B;  4CRZ A;  5FTL A;  1K83 A;  1G8J A;  5C1B A;  2G5D A;  1L8F A;  5T5I D;  2NYA A;  4KO8 A;  3TM7 B;  1CR5 A;  1I50 A;  2NAP A;  2JA5 A;  3SUK A;  3X2M A;  2JIP A;  4JS7 A;  1AA6 A;  5FTJ A;  1HD5 A;  1PT1 A;  1Y1V A;  3GTJ A;  2WAQ A;  4QIW A;  1H0H A;  2PMZ A; 
#chains in the Genus database with same CATH homology
 1H5N A;  2JIQ A;  1E5V A;  2JIO A;  1R9T A;  1Y5I A;  5DYG A;  2R92 A;  3FKI A;  5B6C A;  1UHD A;  2VPY A;  5DYI A;  2VPX A;  2R7Z A;  1CZ5 A;  1EU1 A;  2YUJ A;  1TWC A;  2A68 D;  1CZ4 A;  2BE5 D;  5FTN A;  1KQF A;  3ML1 A;  1G8K A;  4KOD A;  1DMR A;  4KDL A;  3QQ8 A;  1FDO A;  3CQZ A;  3IR5 A;  4NOH A;  3H0G A;  1PPY A;  4AAY A;  1OGY A;  1Y4Z A;  1IW7 D;  3QWZ A;  1YNN D;  4RV0 A;  4D7Z B;  2JIR A;  2R93 A;  4AYB A;  2A6E D;  2WB1 A;  1PQF A;  1QDN A;  1PYU B;  2JA7 A;  1S3S A;  1TMO A;  3GTG A;  1R7R A;  3GTQ A;  5FTM A;  3DMR A;  1PQH A;  4KLN A;  3OUG A;  1ZYR D;  1WLF A;  3HKZ A;  3HU1 A;  4KDI A;  1TWF A;  2AE0 X;  2A6H D;  5T5M D;  4AON B;  4AZD A;  1QCS A;  3TIW A;  2PJJ A;  3GTK A;  2IV2 X;  2E2H A;  2YU9 A;  3GTP A;  1PT0 A;  1AW8 B;  1E18 A;  1SMY D;  5GLF A;  1SFO A;  3IR7 A;  2KI8 A;  2C45 A;  3QQ7 A;  1PQE A;  2GAE A;  5C18 A;  3GTO A;  2VUM A;  2G6G A;  5EPP A;  5FTK A;  2NVX A;  3O5A A;  2E2I A;  1Q16 A;  1YLE A;  2CW0 D;  3GTM A;  3CZB A;  1PYQ A;  1FDI A;  2VPZ A;  4GA5 A;  2JIM A;  4GA6 A;  1E32 A;  4CS0 A;  1E61 A;  1DMS A;  2NVY A;  4AOK B;  1R27 A;  1WCM A;  2PIC A;  2JA6 A;  1I3Q A;  2PI8 A;  2V3V A;  3GTL A;  2O5J D;  2PNW A;  3HU2 A;  1E60 A;  3IR6 A;  2VPW A;  1TWG A;  2A69 D;  4DMR A;  3HU3 A;  2V45 A;  1Y1W A;  1YNJ D;  1ZC1 A;  2E7Z A;  1KQG A;  1TWA A;  2B63 A;  3CF2 A;  2PJH B;  1SIW A;  2Y0S A;  1TWH A;  3QC8 A;  4CRY G;  4C2M A;  1UHE A;  1VC3 B;  3PLX B;  2DMR A;  2EEO B;  4CRZ A;  5FTL A;  1K83 A;  1G8J A;  5C1B A;  2G5D A;  5T5I D;  2NYA A;  4KO8 A;  3TM7 B;  1CR5 A;  1I50 A;  2NAP A;  2JA5 A;  1AA6 A;  2JIP A;  5FTJ A;  1PT1 A;  1Y1V A;  3GTJ A;  2WAQ A;  4QIW A;  1H0H A;  2PMZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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