1PYQA

Unprocessed aspartate decarboxylase mutant, with alanine inserted at position 24
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
120
structure length
120
Chain Sequence
PRGSMIRTMLQGKLHRVKVTHADLHYEAGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Aspartate 1-decarboxylase
publication title Structural Constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
source organism Escherichia coli
molecule tags Lyase
total genus 38
structure length 120
sequence length 120
chains with identical sequence B
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-07-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1pyqA00
2IV2X 5FTLA 2PMZA 4AZDA 4AAYA 3CF2A 5B6CA 1E5VA 1TWFA 3TIWA 3QC8A 3GTQA 1PPYA 1E32A 1EU1A 1PT0A 2NVYA 5FTKA 1I50A 3GTOA 2C45A 1Y5IA 5C18A 1Y4ZA 1PQFA 2VPZA 1CR5A 5T5ID 4CRYG 2WAQA 1TWGA 2JIOA 2DMRA 2NVXA 4DMRA 1G8JA 1TMOA 1R27A 1Y1WA 1SFOA 3IR5A 4KDIA 5EPPA 4KO8A 1VC3B 4AYBA 4CRZA 3GTMA 1PYUB 4GA5A 4D7ZB 4KLNA 3HU3A 4QIWA 4C2MA 1WCMA 1AW8B 1CZ4A 2E7ZA 2NYAA 2JIRA 2EEOB 4KODA 2E2IA 3H0GA 3OUGA 1E61A 1KQGA 3QQ8A 2Y0SA 1OGYA 3CQZA 1KQFA 1G8KA 1PQHA 1QDNA 2V45A 3HKZA 2YU9A 1AA6A 4AONB 2VUMA 5T5MD 1QCSA 3O5AA 2JIPA 2JIMA 3HU1A 3HU2A 1H5NA 5FTNA 2JA7A 1R7RA 1UHDA 1FDIA 1IW7D 1S3SA 3QWZA 3GTLA 2JA5A 1SIWA 3DMRA 5FTMA 4RV0A 1Q16A 3IR6A 1CZ5A 5GLFA 5C1BA 3GTKA 1TWCA 3FKIA 2KI8A 2V3VA 2B63A 2R7ZA 3GTPA 1DMRA 1FDOA 4GA6A 1WLFA 2VPWA 1DMSA 3QQ7A 4AOKB 1UHEA 5DYGA 1PQEA 3GTGA 2WB1A 3ML1A 1R9TA 1H0HA 2JIQA 1TWAA 2R92A 1E60A 2NAPA 4CS0A 2JA6A 2VPYA 3GTJA 1Y1VA 2E2HA 1K83A 2R93A 1YLEA 1I3QA 5FTJA 1TWHA 1PT1A 4KDLA 2VPXA 3PLXB 3TM7B 5DYIA 1E18A 1PYQA 3IR7A 2PJHB
chains in the Genus database with same CATH superfamily
2IV2X 5FTLA 3X2IA 3ENGA 2PMZA 4AZDA 4AAYA 3CF2A 5B6CA 1E5VA 1TWFA 3TIWA 3QC8A 3GTQA 1PPYA 1E32A 2ENGA 4ENGA 1EU1A 3M3GA 4JP6A 1PT0A 2NVYA 5FTKA 4ZM7A 2YUJA 2A6ED 1I50A 3GTOA 2C45A 1Y5IA 5C18A 1Y4ZA 1PQFA 3X2LA 2VPZA 2BH0A 1CR5A 2A69D 5T5ID 2PI8A 4CRYG 2WAQA 1TWGA 2JIOA 1N10A 2DMRA 2A6HD 2NVXA 4DMRA 1G8JA 1TMOA 1R27A 1Y1WA 1SFOA 3IR5A 3X2MA 1BW3A 4KDIA 5EPPA 4KO8A 1VC3B 3SUKA 4AYBA 4CRZA 3GTMA 1PYUB 4GA5A 2CW0D 4D7ZB 4KLNA 3HU3A 4QIWA 2AE0X 1WCMA 4C2MA 1AW8B 1CZ4A 5GLYA 2E7ZA 2NYAA 2JIRA 2EEOB 4KODA 2E2IA 3H0GA 3OUGA 3SUMA 1E61A 1KQGA 2G5DA 3CZBA 2Y0SA 3QQ8A 1OGYA 3CQZA 1KQFA 5GM9A 1SMYD 1G8KA 1PQHA 1QDNA 2V45A 3HKZA 5GLXA 3X2OA 2YU9A 2PNWA 2GAEA 4FERA 1AA6A 4AONB 2VUMA 1OA7A 1ZC1A 5T5MD 1QCSA 3D30A 3O5AA 2HCZX 2JIPA 2PJJA 2JIMA 3HU1A 3X2PA 3HU2A 1H5NA 5FTNA 4JJOA 2JA7A 1R7RA 1UHDA 1FDIA 1IW7D 1S3SA 3QWZA 3X2HA 3GTLA 1SIWA 2JA5A 3SUJA 3X2KA 3DMRA 5FTMA 4RV0A 2A68D 3X2JA 1Q16A 3IR6A 1CZ5A 5GLFA 1YNJD 4JP7A 3X2GA 4FG4A 5C1BA 3GTKA 4FG2A 1TWCA 3FKIA 2KI8A 2V3VA 2B63A 2R7ZA 3GTPA 1DMRA 1FDOA 4GA6A 1WLFA 2VPWA 2KQAA 1DMSA 1L8FA 1WC2A 3QQ7A 4AOKB 5H4UA 1UHEA 4AVRA 5DYGA 1PQEA 4JCWA 2WB1A 3ML1A 4NOHA 3GTGA 1R9TA 2O5JD 1H0HA 1YNND 2JIQA 1TWAA 3SULA 1E60A 2R92A 2NAPA 4CS0A 2BE5D 2JA6A 2VPYA 3GTJA 1Y1VA 2E2HA 2G6GA 1HD5A 1K83A 1BW4A 2R93A 1OA9A 1YLEA 5FTJA 1TWHA 1PT1A 1I3QA 1ZYRD 4JS7A 4KDLA 3X2NA 2VPXA 3PLXB 4FFTA 3TM7B 5DYIA 1E18A 2PICA 1PYQA 3IR7A 4L48A 2PJHB
chains in the Genus database with same CATH topology
2IV2X 5FTLA 2PMZA 4AZDA 4AAYA 3CF2A 5B6CA 1E5VA 1TWFA 3TIWA 3QC8A 3GTQA 1PPYA 1E32A 1EU1A 1PT0A 2NVYA 5FTKA 2YUJA 2A6ED 1I50A 3GTOA 2C45A 1Y5IA 5C18A 1Y4ZA 1PQFA 2VPZA 2A69D 1CR5A 5T5ID 2PI8A 4CRYG 2WAQA 1TWGA 2JIOA 2DMRA 2A6HD 2NVXA 4DMRA 1G8JA 1TMOA 1R27A 1Y1WA 1SFOA 3IR5A 4KDIA 5EPPA 4KO8A 1VC3B 4AYBA 4CRZA 3GTMA 1PYUB 4GA5A 2CW0D 4D7ZB 4KLNA 3HU3A 4QIWA 2AE0X 1WCMA 4C2MA 1AW8B 1CZ4A 2E7ZA 2NYAA 2JIRA 2EEOB 4KODA 2E2IA 3H0GA 3OUGA 1E61A 1KQGA 2G5DA 3CZBA 2Y0SA 3QQ8A 1OGYA 3CQZA 1KQFA 1SMYD 1G8KA 1PQHA 1QDNA 2V45A 3HKZA 2YU9A 2PNWA 2GAEA 1AA6A 4AONB 2VUMA 1ZC1A 5T5MD 1QCSA 3O5AA 2JIPA 2PJJA 2JIMA 3HU1A 3HU2A 1H5NA 5FTNA 2JA7A 1R7RA 1UHDA 1FDIA 1IW7D 1S3SA 3QWZA 3GTLA 2JA5A 1SIWA 3DMRA 5FTMA 4RV0A 2A68D 1Q16A 3IR6A 1CZ5A 5GLFA 1YNJD 5C1BA 3GTKA 1TWCA 3FKIA 2KI8A 2V3VA 2B63A 2R7ZA 3GTPA 1DMRA 1FDOA 4GA6A 1WLFA 2VPWA 1DMSA 3QQ7A 4AOKB 1UHEA 5DYGA 1PQEA 3GTGA 2WB1A 3ML1A 4NOHA 1R9TA 2O5JD 1H0HA 1YNND 2JIQA 1TWAA 2R92A 1E60A 2NAPA 4CS0A 2BE5D 2JA6A 2VPYA 3GTJA 1Y1VA 2E2HA 2G6GA 1K83A 2R93A 1YLEA 1I3QA 5FTJA 1TWHA 1PT1A 1ZYRD 4KDLA 2VPXA 3PLXB 3TM7B 5DYIA 1E18A 2PICA 1PYQA 3IR7A 2PJHB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IV2 X;  5FTL A;  2PMZ A;  4AZD A;  4AAY A;  3CF2 A;  5B6C A;  1E5V A;  1TWF A;  3TIW A;  3QC8 A;  3GTQ A;  1PPY A;  1E32 A;  1EU1 A;  1PT0 A;  2NVY A;  5FTK A;  1I50 A;  3GTO A;  2C45 A;  1Y5I A;  5C18 A;  1Y4Z A;  1PQF A;  2VPZ A;  1CR5 A;  5T5I D;  4CRY G;  2WAQ A;  1TWG A;  2JIO A;  2DMR A;  2NVX A;  4DMR A;  1G8J A;  1TMO A;  1R27 A;  1Y1W A;  1SFO A;  3IR5 A;  4KDI A;  5EPP A;  4KO8 A;  1VC3 B;  4AYB A;  4CRZ A;  3GTM A;  1PYU B;  4GA5 A;  4D7Z B;  4KLN A;  3HU3 A;  4QIW A;  4C2M A;  1WCM A;  1AW8 B;  1CZ4 A;  2E7Z A;  2NYA A;  2JIR A;  2EEO B;  4KOD A;  2E2I A;  3H0G A;  3OUG A;  1E61 A;  1KQG A;  3QQ8 A;  2Y0S A;  1OGY A;  3CQZ A;  1KQF A;  1G8K A;  1PQH A;  1QDN A;  2V45 A;  3HKZ A;  2YU9 A;  1AA6 A;  4AON B;  2VUM A;  5T5M D;  1QCS A;  3O5A A;  2JIP A;  2JIM A;  3HU1 A;  3HU2 A;  1H5N A;  5FTN A;  2JA7 A;  1R7R A;  1UHD A;  1FDI A;  1IW7 D;  1S3S A;  3QWZ A;  3GTL A;  2JA5 A;  1SIW A;  3DMR A;  5FTM A;  4RV0 A;  1Q16 A;  3IR6 A;  1CZ5 A;  5GLF A;  5C1B A;  3GTK A;  1TWC A;  3FKI A;  2KI8 A;  2V3V A;  2B63 A;  2R7Z A;  3GTP A;  1DMR A;  1FDO A;  4GA6 A;  1WLF A;  2VPW A;  1DMS A;  3QQ7 A;  4AOK B;  1UHE A;  5DYG A;  1PQE A;  3GTG A;  2WB1 A;  3ML1 A;  1R9T A;  1H0H A;  2JIQ A;  1TWA A;  2R92 A;  1E60 A;  2NAP A;  4CS0 A;  2JA6 A;  2VPY A;  3GTJ A;  1Y1V A;  2E2H A;  1K83 A;  2R93 A;  1YLE A;  1I3Q A;  5FTJ A;  1TWH A;  1PT1 A;  4KDL A;  2VPX A;  3PLX B;  3TM7 B;  5DYI A;  1E18 A;  1PYQ A;  3IR7 A;  2PJH B; 
#chains in the Genus database with same CATH topology
 2IV2 X;  5FTL A;  3X2I A;  3ENG A;  2PMZ A;  4AZD A;  4AAY A;  3CF2 A;  5B6C A;  1E5V A;  1TWF A;  3TIW A;  3QC8 A;  3GTQ A;  1PPY A;  1E32 A;  2ENG A;  4ENG A;  1EU1 A;  3M3G A;  4JP6 A;  1PT0 A;  2NVY A;  5FTK A;  4ZM7 A;  2YUJ A;  2A6E D;  1I50 A;  3GTO A;  2C45 A;  1Y5I A;  5C18 A;  1Y4Z A;  1PQF A;  3X2L A;  2VPZ A;  2BH0 A;  1CR5 A;  2A69 D;  5T5I D;  2PI8 A;  4CRY G;  2WAQ A;  1TWG A;  2JIO A;  1N10 A;  2DMR A;  2A6H D;  2NVX A;  4DMR A;  1G8J A;  1TMO A;  1R27 A;  1Y1W A;  1SFO A;  3IR5 A;  3X2M A;  1BW3 A;  4KDI A;  5EPP A;  4KO8 A;  1VC3 B;  3SUK A;  4AYB A;  4CRZ A;  3GTM A;  1PYU B;  4GA5 A;  2CW0 D;  4D7Z B;  4KLN A;  3HU3 A;  4QIW A;  2AE0 X;  1WCM A;  4C2M A;  1AW8 B;  1CZ4 A;  5GLY A;  2E7Z A;  2NYA A;  2JIR A;  2EEO B;  4KOD A;  2E2I A;  3H0G A;  3OUG A;  3SUM A;  1E61 A;  1KQG A;  2G5D A;  3CZB A;  2Y0S A;  3QQ8 A;  1OGY A;  3CQZ A;  1KQF A;  5GM9 A;  1SMY D;  1G8K A;  1PQH A;  1QDN A;  2V45 A;  3HKZ A;  5GLX A;  3X2O A;  2YU9 A;  2PNW A;  2GAE A;  4FER A;  1AA6 A;  4AON B;  2VUM A;  1OA7 A;  1ZC1 A;  5T5M D;  1QCS A;  3D30 A;  3O5A A;  2HCZ X;  2JIP A;  2PJJ A;  2JIM A;  3HU1 A;  3X2P A;  3HU2 A;  1H5N A;  5FTN A;  4JJO A;  2JA7 A;  1R7R A;  1UHD A;  1FDI A;  1IW7 D;  1S3S A;  3QWZ A;  3X2H A;  3GTL A;  1SIW A;  2JA5 A;  3SUJ A;  3X2K A;  3DMR A;  5FTM A;  4RV0 A;  2A68 D;  3X2J A;  1Q16 A;  3IR6 A;  1CZ5 A;  5GLF A;  1YNJ D;  4JP7 A;  3X2G A;  4FG4 A;  5C1B A;  3GTK A;  4FG2 A;  1TWC A;  3FKI A;  2KI8 A;  2V3V A;  2B63 A;  2R7Z A;  3GTP A;  1DMR A;  1FDO A;  4GA6 A;  1WLF A;  2VPW A;  2KQA A;  1DMS A;  1L8F A;  1WC2 A;  3QQ7 A;  4AOK B;  5H4U A;  1UHE A;  4AVR A;  5DYG A;  1PQE A;  4JCW A;  2WB1 A;  3ML1 A;  4NOH A;  3GTG A;  1R9T A;  2O5J D;  1H0H A;  1YNN D;  2JIQ A;  1TWA A;  3SUL A;  1E60 A;  2R92 A;  2NAP A;  4CS0 A;  2BE5 D;  2JA6 A;  2VPY A;  3GTJ A;  1Y1V A;  2E2H A;  2G6G A;  1HD5 A;  1K83 A;  1BW4 A;  2R93 A;  1OA9 A;  1YLE A;  5FTJ A;  1TWH A;  1PT1 A;  1I3Q A;  1ZYR D;  4JS7 A;  4KDL A;  3X2N A;  2VPX A;  3PLX B;  4FFT A;  3TM7 B;  5DYI A;  1E18 A;  2PIC A;  1PYQ A;  3IR7 A;  4L48 A;  2PJH B; 
#chains in the Genus database with same CATH homology
 2IV2 X;  5FTL A;  2PMZ A;  4AZD A;  4AAY A;  3CF2 A;  5B6C A;  1E5V A;  1TWF A;  3TIW A;  3QC8 A;  3GTQ A;  1PPY A;  1E32 A;  1EU1 A;  1PT0 A;  2NVY A;  5FTK A;  2YUJ A;  2A6E D;  1I50 A;  3GTO A;  2C45 A;  1Y5I A;  5C18 A;  1Y4Z A;  1PQF A;  2VPZ A;  2A69 D;  1CR5 A;  5T5I D;  2PI8 A;  4CRY G;  2WAQ A;  1TWG A;  2JIO A;  2DMR A;  2A6H D;  2NVX A;  4DMR A;  1G8J A;  1TMO A;  1R27 A;  1Y1W A;  1SFO A;  3IR5 A;  4KDI A;  5EPP A;  4KO8 A;  1VC3 B;  4AYB A;  4CRZ A;  3GTM A;  1PYU B;  4GA5 A;  2CW0 D;  4D7Z B;  4KLN A;  3HU3 A;  4QIW A;  2AE0 X;  1WCM A;  4C2M A;  1AW8 B;  1CZ4 A;  2E7Z A;  2NYA A;  2JIR A;  2EEO B;  4KOD A;  2E2I A;  3H0G A;  3OUG A;  1E61 A;  1KQG A;  2G5D A;  3CZB A;  2Y0S A;  3QQ8 A;  1OGY A;  3CQZ A;  1KQF A;  1SMY D;  1G8K A;  1PQH A;  1QDN A;  2V45 A;  3HKZ A;  2YU9 A;  2PNW A;  2GAE A;  1AA6 A;  4AON B;  2VUM A;  1ZC1 A;  5T5M D;  1QCS A;  3O5A A;  2JIP A;  2PJJ A;  2JIM A;  3HU1 A;  3HU2 A;  1H5N A;  5FTN A;  2JA7 A;  1R7R A;  1UHD A;  1FDI A;  1IW7 D;  1S3S A;  3QWZ A;  3GTL A;  2JA5 A;  1SIW A;  3DMR A;  5FTM A;  4RV0 A;  2A68 D;  1Q16 A;  3IR6 A;  1CZ5 A;  5GLF A;  1YNJ D;  5C1B A;  3GTK A;  1TWC A;  3FKI A;  2KI8 A;  2V3V A;  2B63 A;  2R7Z A;  3GTP A;  1DMR A;  1FDO A;  4GA6 A;  1WLF A;  2VPW A;  1DMS A;  3QQ7 A;  4AOK B;  1UHE A;  5DYG A;  1PQE A;  3GTG A;  2WB1 A;  3ML1 A;  4NOH A;  1R9T A;  2O5J D;  1H0H A;  1YNN D;  2JIQ A;  1TWA A;  2R92 A;  1E60 A;  2NAP A;  4CS0 A;  2BE5 D;  2JA6 A;  2VPY A;  3GTJ A;  1Y1V A;  2E2H A;  2G6G A;  1K83 A;  2R93 A;  1YLE A;  1I3Q A;  5FTJ A;  1TWH A;  1PT1 A;  1ZYR D;  4KDL A;  2VPX A;  3PLX B;  3TM7 B;  5DYI A;  1E18 A;  2PIC A;  1PYQ A;  3IR7 A;  2PJH B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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