1PYQA

Unprocessed aspartate decarboxylase mutant, with alanine inserted at position 24
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
120
structure length
120
Chain Sequence
PRGSMIRTMLQGKLHRVKVTHADLHYEAGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Aspartate 1-decarboxylase
publication title Structural Constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
source organism Escherichia coli
molecule tags Lyase
total genus 38
structure length 120
sequence length 120
chains with identical sequence B
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-07-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1pyqA00
5FTMA 4QIWA 4CS0A 3FKIA 3TIWA 1TWGA 1K83A 1TMOA 3CF2A 2VPYA 3HU2A 1YLEA 3HU3A 5FTNA 1R9TA 2VUMA 5T5MD 2NAPA 2NVXA 2JIMA 5DYIA 4KO8A 3OUGA 4CRZA 4GA6A 1PPYA 1PYUB 1KQFA 3HU1A 1I3QA 2WAQA 2R92A 1Y4ZA 5EPPA 4CRYG 2R7ZA 2JIOA 2V3VA 1PT0A 1PQFA 1Y1VA 1I50A 5FTKA 2NYAA 2VPZA 3QWZA 5T5ID 1FDIA 2V45A 5C1BA 2EEOB 1PQEA 3IR7A 3GTKA 1H0HA 1VC3B 4KDIA 2IV2X 1PT1A 2VPWA 3PLXB 1QDNA 1OGYA 2E2IA 3GTLA 4AONB 2DMRA 1QCSA 1Y1WA 4C2MA 1E61A 3GTJA 2NVYA 2JA5A 3GTQA 3GTMA 4AOKB 2JA6A 1EU1A 1TWFA 1SIWA 4KDLA 4DMRA 3DMRA 3QQ7A 1CZ4A 1TWAA 1E18A 2Y0SA 4RV0A 1CR5A 1H5NA 3IR5A 1TWCA 4KLNA 3QC8A 2E2HA 1E5VA 3ML1A 1TWHA 1FDOA 1WCMA 1DMRA 3CQZA 1CZ5A 1PYQA 1UHDA 2C45A 5B6CA 1R27A 1Q16A 1WLFA 5C18A 1S3SA 3H0GA 1R7RA 2PJHB 2R93A 1KQGA 1SFOA 2JIQA 1Y5IA 4AZDA 1G8JA 1AA6A 5GLFA 5FTLA 1AW8B 1DMSA 1PQHA 4D7ZB 2YU9A 4GA5A 2B63A 1IW7D 2WB1A 1UHEA 2JIPA 4KODA 3GTOA 5DYGA 1G8KA 3GTPA 3HKZA 1E32A 2JA7A 2E7ZA 4AAYA 3O5AA 2PMZA 3TM7B 2JIRA 3GTGA 3QQ8A 5FTJA 1E60A 2VPXA 2KI8A 4AYBA 3IR6A
chains in the Genus database with same CATH superfamily
5FTMA 4QIWA 4CS0A 4NOHA 3X2LA 3FKIA 3TIWA 3SUKA 1TWGA 1K83A 1TMOA 1ZYRD 2A6HD 1L8FA 3CF2A 4JP7A 3X2GA 2VPYA 4ENGA 1OA7A 2A68D 3HU2A 1YLEA 3HU3A 2A6ED 5FTNA 5GM9A 1R9TA 2VUMA 5T5MD 2NAPA 2NVXA 4L48A 1BW3A 2JIMA 5DYIA 4KO8A 3OUGA 4CRZA 4GA6A 1PPYA 1PYUB 2A69D 1KQFA 3HU1A 1I3QA 1N10A 3X2PA 2WAQA 2R92A 1Y4ZA 5EPPA 4CRYG 3M3GA 2JIOA 2R7ZA 2PICA 2V3VA 1PT0A 1PQFA 1Y1VA 1I50A 5FTKA 2NYAA 2VPZA 2G6GA 3QWZA 5T5ID 4AVRA 3X2JA 1FDIA 2V45A 2O5JD 2BH0A 2EEOB 5C1BA 2YUJA 1PQEA 3IR7A 4JCWA 3SUJA 3GTKA 3SUMA 1H0HA 1VC3B 4KDIA 2IV2X 1YNJD 1PT1A 2VPWA 1OA9A 1WC2A 3PLXB 4AYBA 1QDNA 1OGYA 2E2IA 2BE5D 3GTLA 3X2HA 2DMRA 1QCSA 4AONB 1Y1WA 4C2MA 1E61A 3GTJA 2NVYA 2JA5A 3GTQA 3GTMA 3X2MA 4AOKB 2JA6A 1EU1A 1TWFA 1SIWA 4KDLA 4DMRA 3DMRA 3QQ7A 2ENGA 5H4UA 1CZ4A 1TWAA 1E18A 1YNND 2PNWA 2Y0SA 4RV0A 1CR5A 2E2HA 1H5NA 4JS7A 3IR5A 1TWCA 4KLNA 3QC8A 4FG2A 1E5VA 3ML1A 1TWHA 2AE0X 3D30A 5GLYA 1FDOA 1WCMA 1DMRA 3CQZA 1CZ5A 1PYQA 1UHDA 2C45A 5B6CA 3CZBA 1SMYD 1R27A 1Q16A 1WLFA 3X2IA 4FG4A 5C18A 1S3SA 3H0GA 1R7RA 2GAEA 2HCZX 1ZC1A 3X2OA 4ZM7A 2PJHB 4FFTA 4FERA 2R93A 1KQGA 1SFOA 2PI8A 2JIQA 1Y5IA 4AZDA 1G8JA 2CW0D 1AA6A 5GLFA 5FTLA 1AW8B 1DMSA 1PQHA 4D7ZB 2YU9A 4GA5A 2B63A 1IW7D 2WB1A 1UHEA 2JIPA 4KODA 3GTOA 4JP6A 5GLXA 1BW4A 5DYGA 1G8KA 3X2KA 3GTPA 3ENGA 3HKZA 1E32A 2JA7A 2E7ZA 4AAYA 3O5AA 2PMZA 3TM7B 1HD5A 2JIRA 4JJOA 3GTGA 3QQ8A 2G5DA 5FTJA 1E60A 2PJJA 2VPXA 2KI8A 2KQAA 3SULA 3IR6A 3X2NA
chains in the Genus database with same CATH topology
5FTMA 4QIWA 4CS0A 4NOHA 3FKIA 3TIWA 1TWGA 1K83A 1TMOA 1ZYRD 2A6HD 3CF2A 2VPYA 2A68D 3HU2A 1YLEA 3HU3A 2A6ED 5FTNA 1R9TA 2VUMA 5T5MD 2NAPA 2NVXA 2JIMA 5DYIA 4KO8A 3OUGA 4CRZA 4GA6A 1PPYA 1PYUB 2A69D 1KQFA 3HU1A 1I3QA 2WAQA 2R92A 1Y4ZA 5EPPA 4CRYG 2R7ZA 2JIOA 2PICA 2V3VA 1PT0A 1PQFA 1Y1VA 1I50A 5FTKA 2NYAA 2VPZA 2G6GA 3QWZA 5T5ID 1FDIA 2V45A 2O5JD 5C1BA 2EEOB 2YUJA 1PQEA 3IR7A 3GTKA 1H0HA 1VC3B 4KDIA 2IV2X 1YNJD 1PT1A 2VPWA 3PLXB 1QDNA 1OGYA 2E2IA 2BE5D 3GTLA 4AONB 2DMRA 1QCSA 1Y1WA 4C2MA 1E61A 3GTJA 2NVYA 2JA5A 3GTQA 3GTMA 4AOKB 2JA6A 1EU1A 1TWFA 1SIWA 4KDLA 4DMRA 3DMRA 3QQ7A 1CZ4A 1TWAA 1E18A 1YNND 2PNWA 2Y0SA 4RV0A 1CR5A 1H5NA 3IR5A 1TWCA 4KLNA 3QC8A 2E2HA 1E5VA 3ML1A 1TWHA 2AE0X 1FDOA 1WCMA 1DMRA 3CQZA 1CZ5A 1PYQA 1UHDA 2C45A 5B6CA 3CZBA 1SMYD 1R27A 1Q16A 1WLFA 5C18A 1S3SA 3H0GA 1R7RA 2GAEA 1ZC1A 2PJHB 2R93A 1KQGA 1SFOA 2PI8A 2JIQA 1Y5IA 4AZDA 1G8JA 2CW0D 1AA6A 5GLFA 5FTLA 1AW8B 1DMSA 1PQHA 4D7ZB 2YU9A 4GA5A 2B63A 1IW7D 2WB1A 1UHEA 2JIPA 4KODA 3GTOA 5DYGA 1G8KA 3GTPA 3HKZA 1E32A 2JA7A 2E7ZA 4AAYA 3O5AA 2PMZA 3TM7B 2JIRA 3GTGA 3QQ8A 2G5DA 5FTJA 1E60A 2PJJA 2VPXA 2KI8A 4AYBA 3IR6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5FTM A;  4QIW A;  4CS0 A;  3FKI A;  3TIW A;  1TWG A;  1K83 A;  1TMO A;  3CF2 A;  2VPY A;  3HU2 A;  1YLE A;  3HU3 A;  5FTN A;  1R9T A;  2VUM A;  5T5M D;  2NAP A;  2NVX A;  2JIM A;  5DYI A;  4KO8 A;  3OUG A;  4CRZ A;  4GA6 A;  1PPY A;  1PYU B;  1KQF A;  3HU1 A;  1I3Q A;  2WAQ A;  2R92 A;  1Y4Z A;  5EPP A;  4CRY G;  2R7Z A;  2JIO A;  2V3V A;  1PT0 A;  1PQF A;  1Y1V A;  1I50 A;  5FTK A;  2NYA A;  2VPZ A;  3QWZ A;  5T5I D;  1FDI A;  2V45 A;  5C1B A;  2EEO B;  1PQE A;  3IR7 A;  3GTK A;  1H0H A;  1VC3 B;  4KDI A;  2IV2 X;  1PT1 A;  2VPW A;  3PLX B;  1QDN A;  1OGY A;  2E2I A;  3GTL A;  4AON B;  2DMR A;  1QCS A;  1Y1W A;  4C2M A;  1E61 A;  3GTJ A;  2NVY A;  2JA5 A;  3GTQ A;  3GTM A;  4AOK B;  2JA6 A;  1EU1 A;  1TWF A;  1SIW A;  4KDL A;  4DMR A;  3DMR A;  3QQ7 A;  1CZ4 A;  1TWA A;  1E18 A;  2Y0S A;  4RV0 A;  1CR5 A;  1H5N A;  3IR5 A;  1TWC A;  4KLN A;  3QC8 A;  2E2H A;  1E5V A;  3ML1 A;  1TWH A;  1FDO A;  1WCM A;  1DMR A;  3CQZ A;  1CZ5 A;  1PYQ A;  1UHD A;  2C45 A;  5B6C A;  1R27 A;  1Q16 A;  1WLF A;  5C18 A;  1S3S A;  3H0G A;  1R7R A;  2PJH B;  2R93 A;  1KQG A;  1SFO A;  2JIQ A;  1Y5I A;  4AZD A;  1G8J A;  1AA6 A;  5GLF A;  5FTL A;  1AW8 B;  1DMS A;  1PQH A;  4D7Z B;  2YU9 A;  4GA5 A;  2B63 A;  1IW7 D;  2WB1 A;  1UHE A;  2JIP A;  4KOD A;  3GTO A;  5DYG A;  1G8K A;  3GTP A;  3HKZ A;  1E32 A;  2JA7 A;  2E7Z A;  4AAY A;  3O5A A;  2PMZ A;  3TM7 B;  2JIR A;  3GTG A;  3QQ8 A;  5FTJ A;  1E60 A;  2VPX A;  2KI8 A;  4AYB A;  3IR6 A; 
#chains in the Genus database with same CATH topology
 5FTM A;  4QIW A;  4CS0 A;  4NOH A;  3X2L A;  3FKI A;  3TIW A;  3SUK A;  1TWG A;  1K83 A;  1TMO A;  1ZYR D;  2A6H D;  1L8F A;  3CF2 A;  4JP7 A;  3X2G A;  2VPY A;  4ENG A;  1OA7 A;  2A68 D;  3HU2 A;  1YLE A;  3HU3 A;  2A6E D;  5FTN A;  5GM9 A;  1R9T A;  2VUM A;  5T5M D;  2NAP A;  2NVX A;  4L48 A;  1BW3 A;  2JIM A;  5DYI A;  4KO8 A;  3OUG A;  4CRZ A;  4GA6 A;  1PPY A;  1PYU B;  2A69 D;  1KQF A;  3HU1 A;  1I3Q A;  1N10 A;  3X2P A;  2WAQ A;  2R92 A;  1Y4Z A;  5EPP A;  4CRY G;  3M3G A;  2JIO A;  2R7Z A;  2PIC A;  2V3V A;  1PT0 A;  1PQF A;  1Y1V A;  1I50 A;  5FTK A;  2NYA A;  2VPZ A;  2G6G A;  3QWZ A;  5T5I D;  4AVR A;  3X2J A;  1FDI A;  2V45 A;  2O5J D;  2BH0 A;  2EEO B;  5C1B A;  2YUJ A;  1PQE A;  3IR7 A;  4JCW A;  3SUJ A;  3GTK A;  3SUM A;  1H0H A;  1VC3 B;  4KDI A;  2IV2 X;  1YNJ D;  1PT1 A;  2VPW A;  1OA9 A;  1WC2 A;  3PLX B;  4AYB A;  1QDN A;  1OGY A;  2E2I A;  2BE5 D;  3GTL A;  3X2H A;  2DMR A;  1QCS A;  4AON B;  1Y1W A;  4C2M A;  1E61 A;  3GTJ A;  2NVY A;  2JA5 A;  3GTQ A;  3GTM A;  3X2M A;  4AOK B;  2JA6 A;  1EU1 A;  1TWF A;  1SIW A;  4KDL A;  4DMR A;  3DMR A;  3QQ7 A;  2ENG A;  5H4U A;  1CZ4 A;  1TWA A;  1E18 A;  1YNN D;  2PNW A;  2Y0S A;  4RV0 A;  1CR5 A;  2E2H A;  1H5N A;  4JS7 A;  3IR5 A;  1TWC A;  4KLN A;  3QC8 A;  4FG2 A;  1E5V A;  3ML1 A;  1TWH A;  2AE0 X;  3D30 A;  5GLY A;  1FDO A;  1WCM A;  1DMR A;  3CQZ A;  1CZ5 A;  1PYQ A;  1UHD A;  2C45 A;  5B6C A;  3CZB A;  1SMY D;  1R27 A;  1Q16 A;  1WLF A;  3X2I A;  4FG4 A;  5C18 A;  1S3S A;  3H0G A;  1R7R A;  2GAE A;  2HCZ X;  1ZC1 A;  3X2O A;  4ZM7 A;  2PJH B;  4FFT A;  4FER A;  2R93 A;  1KQG A;  1SFO A;  2PI8 A;  2JIQ A;  1Y5I A;  4AZD A;  1G8J A;  2CW0 D;  1AA6 A;  5GLF A;  5FTL A;  1AW8 B;  1DMS A;  1PQH A;  4D7Z B;  2YU9 A;  4GA5 A;  2B63 A;  1IW7 D;  2WB1 A;  1UHE A;  2JIP A;  4KOD A;  3GTO A;  4JP6 A;  5GLX A;  1BW4 A;  5DYG A;  1G8K A;  3X2K A;  3GTP A;  3ENG A;  3HKZ A;  1E32 A;  2JA7 A;  2E7Z A;  4AAY A;  3O5A A;  2PMZ A;  3TM7 B;  1HD5 A;  2JIR A;  4JJO A;  3GTG A;  3QQ8 A;  2G5D A;  5FTJ A;  1E60 A;  2PJJ A;  2VPX A;  2KI8 A;  2KQA A;  3SUL A;  3IR6 A;  3X2N A; 
#chains in the Genus database with same CATH homology
 5FTM A;  4QIW A;  4CS0 A;  4NOH A;  3FKI A;  3TIW A;  1TWG A;  1K83 A;  1TMO A;  1ZYR D;  2A6H D;  3CF2 A;  2VPY A;  2A68 D;  3HU2 A;  1YLE A;  3HU3 A;  2A6E D;  5FTN A;  1R9T A;  2VUM A;  5T5M D;  2NAP A;  2NVX A;  2JIM A;  5DYI A;  4KO8 A;  3OUG A;  4CRZ A;  4GA6 A;  1PPY A;  1PYU B;  2A69 D;  1KQF A;  3HU1 A;  1I3Q A;  2WAQ A;  2R92 A;  1Y4Z A;  5EPP A;  4CRY G;  2R7Z A;  2JIO A;  2PIC A;  2V3V A;  1PT0 A;  1PQF A;  1Y1V A;  1I50 A;  5FTK A;  2NYA A;  2VPZ A;  2G6G A;  3QWZ A;  5T5I D;  1FDI A;  2V45 A;  2O5J D;  5C1B A;  2EEO B;  2YUJ A;  1PQE A;  3IR7 A;  3GTK A;  1H0H A;  1VC3 B;  4KDI A;  2IV2 X;  1YNJ D;  1PT1 A;  2VPW A;  3PLX B;  1QDN A;  1OGY A;  2E2I A;  2BE5 D;  3GTL A;  4AON B;  2DMR A;  1QCS A;  1Y1W A;  4C2M A;  1E61 A;  3GTJ A;  2NVY A;  2JA5 A;  3GTQ A;  3GTM A;  4AOK B;  2JA6 A;  1EU1 A;  1TWF A;  1SIW A;  4KDL A;  4DMR A;  3DMR A;  3QQ7 A;  1CZ4 A;  1TWA A;  1E18 A;  1YNN D;  2PNW A;  2Y0S A;  4RV0 A;  1CR5 A;  1H5N A;  3IR5 A;  1TWC A;  4KLN A;  3QC8 A;  2E2H A;  1E5V A;  3ML1 A;  1TWH A;  2AE0 X;  1FDO A;  1WCM A;  1DMR A;  3CQZ A;  1CZ5 A;  1PYQ A;  1UHD A;  2C45 A;  5B6C A;  3CZB A;  1SMY D;  1R27 A;  1Q16 A;  1WLF A;  5C18 A;  1S3S A;  3H0G A;  1R7R A;  2GAE A;  1ZC1 A;  2PJH B;  2R93 A;  1KQG A;  1SFO A;  2PI8 A;  2JIQ A;  1Y5I A;  4AZD A;  1G8J A;  2CW0 D;  1AA6 A;  5GLF A;  5FTL A;  1AW8 B;  1DMS A;  1PQH A;  4D7Z B;  2YU9 A;  4GA5 A;  2B63 A;  1IW7 D;  2WB1 A;  1UHE A;  2JIP A;  4KOD A;  3GTO A;  5DYG A;  1G8K A;  3GTP A;  3HKZ A;  1E32 A;  2JA7 A;  2E7Z A;  4AAY A;  3O5A A;  2PMZ A;  3TM7 B;  2JIR A;  3GTG A;  3QQ8 A;  2G5D A;  5FTJ A;  1E60 A;  2PJJ A;  2VPX A;  2KI8 A;  4AYB A;  3IR6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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