1PYQA

Unprocessed aspartate decarboxylase mutant, with alanine inserted at position 24
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
120
structure length
120
Chain Sequence
b'PRGSMIRTMLQGKLHRVKVTHADLHYEAGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Aspartate 1-decarboxylase
molecule tags Lyase
source organism Escherichia coli
publication title Structural Constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
total genus 38
structure length 120
sequence length 120
chains with identical sequence B
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-07-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1pyqA00
1PT1A 1Y1VA 2VPZA 2YU9A 2JA6A 2R92A 4AOKB 1TWGA 3DMRA 2KI8A 5C1BA 1Q16A 2JA7A 5FTKA 1R27A 5GLFA 5FTJA 1R9TA 3QWZA 2VUMA 2E2IA 2C45A 3ML1A 1E32A 1TWAA 2NVXA 1WLFA 1TWCA 2Y0SA 3GTKA 1PYUB 2JIMA 3GTGA 2R93A 4AZDA 3GTPA 3HU2A 1PPYA 4CRYG 5T5MD 5DYIA 4GA5A 4QIWA 5FTNA 1PT0A 3HU3A 1OGYA 3IR6A 4AAYA 2WAQA 2EEOB 1CR5A 3GTLA 2JIPA 2JIRA 1PQEA 1DMRA 2VPYA 2JIQA 4CS0A 1QCSA 1TWFA 3PLXB 3GTJA 1WCMA 3QC8A 1FDIA 2V45A 3TM7B 4DMRA 1H5NA 1Y4ZA 2PMZA 2JIOA 1G8JA 1SFOA 2E7ZA 3O5AA 2E2HA 3CQZA 1SIWA 1I3QA 3IR5A 3H0GA 4KDIA 1E18A 5DYGA 4D7ZB 3GTQA 2PJHB 4KLNA 5FTLA 1I50A 4GA6A 5B6CA 1IW7D 3GTMA 3HU1A 3GTOA 2NYAA 1TWHA 5T5ID 1E5VA 2R7ZA 3TIWA 4KO8A 2NVYA 1G8KA 3OUGA 5FTMA 1DMSA 1AA6A 1KQFA 1UHEA 5C18A 2V3VA 3HKZA 1PQHA 2JA5A 1EU1A 2IV2X 1S3SA 1UHDA 4KODA 3QQ7A 5EPPA 1H0HA 3CF2A 4C2MA 1R7RA 1QDNA 4RV0A 1TMOA 2DMRA 3FKIA 2VPXA 1PQFA 2NAPA 1CZ5A 4KDLA 3IR7A 1FDOA 2VPWA 1E60A 1E61A 1Y1WA 1AW8B 1CZ4A 1K83A 1PYQA 1VC3B 4CRZA 1YLEA 3QQ8A 4AONB 4AYBA 2WB1A 2B63A 1KQGA 1Y5IA
chains in the Genus database with same CATH superfamily
1PT1A 1Y1VA 2VPZA 3X2JA 2YU9A 2JA6A 3SULA 3X2PA 4AOKB 2R92A 3ENGA 1TWGA 3DMRA 1SMYD 2KI8A 3X2HA 2A68D 5C1BA 1Q16A 4AVRA 2JA7A 4JCWA 1R27A 5FTKA 5GLFA 5FTJA 2YUJA 5GLYA 1R9TA 4JP7A 3QWZA 2VUMA 4L48A 2C45A 2E2IA 3ML1A 5H4UA 1ZC1A 1E32A 1TWAA 2NVXA 1WLFA 1TWCA 2BE5D 2Y0SA 1L8FA 3X2KA 3GTKA 1PYUB 2JIMA 4JP6A 3GTGA 2R93A 1OA7A 4AZDA 3GTPA 3HU2A 1BW3A 1PPYA 1HD5A 4FERA 4CRYG 5T5MD 5DYIA 4GA5A 4QIWA 2BH0A 5FTNA 1PT0A 3HU3A 4ZM7A 1OGYA 2CW0D 3IR6A 4AAYA 2WAQA 2EEOB 1CR5A 3GTLA 2A6ED 2JIPA 2JIRA 1PQEA 1DMRA 2VPYA 2JIQA 4CS0A 1QCSA 1TWFA 3PLXB 3GTJA 1WCMA 2O5JD 1ZYRD 1FDIA 3QC8A 2V45A 1YNND 3TM7B 4DMRA 1H5NA 1Y4ZA 2PMZA 1YNJD 2JIOA 1G8JA 1SFOA 2E7ZA 3O5AA 2E2HA 3CQZA 4FG4A 1SIWA 1I3QA 3IR5A 3H0GA 4KDIA 1E18A 5DYGA 4D7ZB 3CZBA 2PI8A 3GTQA 2AE0X 2PJHB 4FFTA 4KLNA 5FTLA 1I50A 4GA6A 5B6CA 1IW7D 3GTMA 3HU1A 3GTOA 2NYAA 1TWHA 5T5ID 1E5VA 2R7ZA 1KQGA 3TIWA 2ENGA 3X2NA 4KO8A 2NVYA 1G8KA 3OUGA 5FTMA 1DMSA 1AA6A 1KQFA 1UHEA 2G6GA 3X2GA 5C18A 2V3VA 3HKZA 3SUJA 1PQHA 2PJJA 2GAEA 2PICA 2JA5A 1EU1A 2IV2X 1S3SA 3X2MA 1UHDA 4KODA 3QQ7A 2A6HD 4ENGA 5EPPA 1H0HA 2PNWA 3X2OA 3CF2A 2KQAA 5GM9A 1R7RA 1QDNA 4RV0A 3X2LA 4C2MA 1TMOA 2DMRA 3FKIA 4JJOA 3D30A 2G5DA 2VPXA 1PQFA 1BW4A 2NAPA 1CZ5A 4KDLA 3IR7A 1FDOA 2VPWA 1E60A 1E61A 1Y1WA 1AW8B 1CZ4A 4NOHA 1K83A 3X2IA 4JS7A 2HCZX 1PYQA 1VC3B 4CRZA 1YLEA 1OA9A 3QQ8A 4AONB 5GLXA 4AYBA 4FG2A 3SUKA 1N10A 2A69D 2WB1A 2B63A 3M3GA 3SUMA 1WC2A 1Y5IA
chains in the Genus database with same CATH topology
1PT1A 1Y1VA 2VPZA 2YU9A 2JA6A 2R92A 4AOKB 1TWGA 3DMRA 1SMYD 2KI8A 2A68D 5C1BA 1Q16A 2JA7A 5FTKA 1R27A 5GLFA 5FTJA 2YUJA 1R9TA 3QWZA 2VUMA 2E2IA 2C45A 3ML1A 1ZC1A 1E32A 1TWAA 2NVXA 1WLFA 1TWCA 2BE5D 2Y0SA 3GTKA 1PYUB 2JIMA 3GTGA 2R93A 4AZDA 3GTPA 3HU2A 1PPYA 4CRYG 5T5MD 5DYIA 4GA5A 4QIWA 5FTNA 1PT0A 3HU3A 1OGYA 2CW0D 3IR6A 4AAYA 2WAQA 2EEOB 1CR5A 3GTLA 2A6ED 2JIPA 2JIRA 1PQEA 1DMRA 2VPYA 2JIQA 4CS0A 1QCSA 1TWFA 3PLXB 3GTJA 1WCMA 2O5JD 1ZYRD 1FDIA 3QC8A 2V45A 1YNND 3TM7B 4DMRA 1H5NA 1Y4ZA 2PMZA 1YNJD 2JIOA 1G8JA 1SFOA 2E7ZA 3O5AA 2E2HA 3CQZA 1SIWA 1I3QA 3IR5A 3H0GA 4KDIA 1E18A 5DYGA 4D7ZB 3CZBA 2PI8A 3GTQA 2AE0X 2PJHB 4KLNA 5FTLA 1I50A 4GA6A 5B6CA 1IW7D 3GTMA 3HU1A 3GTOA 2NYAA 1TWHA 5T5ID 1E5VA 2R7ZA 1KQGA 3TIWA 4KO8A 2NVYA 1G8KA 3OUGA 5FTMA 1DMSA 1AA6A 1KQFA 1UHEA 2G6GA 5C18A 2V3VA 3HKZA 1PQHA 2PJJA 2GAEA 2PICA 2JA5A 1EU1A 2IV2X 1S3SA 1UHDA 4KODA 3QQ7A 2A6HD 5EPPA 1H0HA 2PNWA 3CF2A 4C2MA 1R7RA 1QDNA 4RV0A 1TMOA 2DMRA 3FKIA 2G5DA 2VPXA 1PQFA 2NAPA 1CZ5A 4KDLA 3IR7A 1FDOA 2VPWA 1E60A 1E61A 1Y1WA 1AW8B 1CZ4A 1K83A 1PYQA 1VC3B 4CRZA 1YLEA 3QQ8A 4AONB 4AYBA 2A69D 2WB1A 2B63A 4NOHA 1Y5IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PT1 A;  1Y1V A;  2VPZ A;  2YU9 A;  2JA6 A;  2R92 A;  4AOK B;  1TWG A;  3DMR A;  2KI8 A;  5C1B A;  1Q16 A;  2JA7 A;  5FTK A;  1R27 A;  5GLF A;  5FTJ A;  1R9T A;  3QWZ A;  2VUM A;  2E2I A;  2C45 A;  3ML1 A;  1E32 A;  1TWA A;  2NVX A;  1WLF A;  1TWC A;  2Y0S A;  3GTK A;  1PYU B;  2JIM A;  3GTG A;  2R93 A;  4AZD A;  3GTP A;  3HU2 A;  1PPY A;  4CRY G;  5T5M D;  5DYI A;  4GA5 A;  4QIW A;  5FTN A;  1PT0 A;  3HU3 A;  1OGY A;  3IR6 A;  4AAY A;  2WAQ A;  2EEO B;  1CR5 A;  3GTL A;  2JIP A;  2JIR A;  1PQE A;  1DMR A;  2VPY A;  2JIQ A;  4CS0 A;  1QCS A;  1TWF A;  3PLX B;  3GTJ A;  1WCM A;  3QC8 A;  1FDI A;  2V45 A;  3TM7 B;  4DMR A;  1H5N A;  1Y4Z A;  2PMZ A;  2JIO A;  1G8J A;  1SFO A;  2E7Z A;  3O5A A;  2E2H A;  3CQZ A;  1SIW A;  1I3Q A;  3IR5 A;  3H0G A;  4KDI A;  1E18 A;  5DYG A;  4D7Z B;  3GTQ A;  2PJH B;  4KLN A;  5FTL A;  1I50 A;  4GA6 A;  5B6C A;  1IW7 D;  3GTM A;  3HU1 A;  3GTO A;  2NYA A;  1TWH A;  5T5I D;  1E5V A;  2R7Z A;  3TIW A;  4KO8 A;  2NVY A;  1G8K A;  3OUG A;  5FTM A;  1DMS A;  1AA6 A;  1KQF A;  1UHE A;  5C18 A;  2V3V A;  3HKZ A;  1PQH A;  2JA5 A;  1EU1 A;  2IV2 X;  1S3S A;  1UHD A;  4KOD A;  3QQ7 A;  5EPP A;  1H0H A;  3CF2 A;  4C2M A;  1R7R A;  1QDN A;  4RV0 A;  1TMO A;  2DMR A;  3FKI A;  2VPX A;  1PQF A;  2NAP A;  1CZ5 A;  4KDL A;  3IR7 A;  1FDO A;  2VPW A;  1E60 A;  1E61 A;  1Y1W A;  1AW8 B;  1CZ4 A;  1K83 A;  1PYQ A;  1VC3 B;  4CRZ A;  1YLE A;  3QQ8 A;  4AON B;  4AYB A;  2WB1 A;  2B63 A;  1KQG A;  1Y5I A; 
#chains in the Genus database with same CATH topology
 1PT1 A;  1Y1V A;  2VPZ A;  3X2J A;  2YU9 A;  2JA6 A;  3SUL A;  3X2P A;  4AOK B;  2R92 A;  3ENG A;  1TWG A;  3DMR A;  1SMY D;  2KI8 A;  3X2H A;  2A68 D;  5C1B A;  1Q16 A;  4AVR A;  2JA7 A;  4JCW A;  1R27 A;  5FTK A;  5GLF A;  5FTJ A;  2YUJ A;  5GLY A;  1R9T A;  4JP7 A;  3QWZ A;  2VUM A;  4L48 A;  2C45 A;  2E2I A;  3ML1 A;  5H4U A;  1ZC1 A;  1E32 A;  1TWA A;  2NVX A;  1WLF A;  1TWC A;  2BE5 D;  2Y0S A;  1L8F A;  3X2K A;  3GTK A;  1PYU B;  2JIM A;  4JP6 A;  3GTG A;  2R93 A;  1OA7 A;  4AZD A;  3GTP A;  3HU2 A;  1BW3 A;  1PPY A;  1HD5 A;  4FER A;  4CRY G;  5T5M D;  5DYI A;  4GA5 A;  4QIW A;  2BH0 A;  5FTN A;  1PT0 A;  3HU3 A;  4ZM7 A;  1OGY A;  2CW0 D;  3IR6 A;  4AAY A;  2WAQ A;  2EEO B;  1CR5 A;  3GTL A;  2A6E D;  2JIP A;  2JIR A;  1PQE A;  1DMR A;  2VPY A;  2JIQ A;  4CS0 A;  1QCS A;  1TWF A;  3PLX B;  3GTJ A;  1WCM A;  2O5J D;  1ZYR D;  1FDI A;  3QC8 A;  2V45 A;  1YNN D;  3TM7 B;  4DMR A;  1H5N A;  1Y4Z A;  2PMZ A;  1YNJ D;  2JIO A;  1G8J A;  1SFO A;  2E7Z A;  3O5A A;  2E2H A;  3CQZ A;  4FG4 A;  1SIW A;  1I3Q A;  3IR5 A;  3H0G A;  4KDI A;  1E18 A;  5DYG A;  4D7Z B;  3CZB A;  2PI8 A;  3GTQ A;  2AE0 X;  2PJH B;  4FFT A;  4KLN A;  5FTL A;  1I50 A;  4GA6 A;  5B6C A;  1IW7 D;  3GTM A;  3HU1 A;  3GTO A;  2NYA A;  1TWH A;  5T5I D;  1E5V A;  2R7Z A;  1KQG A;  3TIW A;  2ENG A;  3X2N A;  4KO8 A;  2NVY A;  1G8K A;  3OUG A;  5FTM A;  1DMS A;  1AA6 A;  1KQF A;  1UHE A;  2G6G A;  3X2G A;  5C18 A;  2V3V A;  3HKZ A;  3SUJ A;  1PQH A;  2PJJ A;  2GAE A;  2PIC A;  2JA5 A;  1EU1 A;  2IV2 X;  1S3S A;  3X2M A;  1UHD A;  4KOD A;  3QQ7 A;  2A6H D;  4ENG A;  5EPP A;  1H0H A;  2PNW A;  3X2O A;  3CF2 A;  2KQA A;  5GM9 A;  1R7R A;  1QDN A;  4RV0 A;  3X2L A;  4C2M A;  1TMO A;  2DMR A;  3FKI A;  4JJO A;  3D30 A;  2G5D A;  2VPX A;  1PQF A;  1BW4 A;  2NAP A;  1CZ5 A;  4KDL A;  3IR7 A;  1FDO A;  2VPW A;  1E60 A;  1E61 A;  1Y1W A;  1AW8 B;  1CZ4 A;  4NOH A;  1K83 A;  3X2I A;  4JS7 A;  2HCZ X;  1PYQ A;  1VC3 B;  4CRZ A;  1YLE A;  1OA9 A;  3QQ8 A;  4AON B;  5GLX A;  4AYB A;  4FG2 A;  3SUK A;  1N10 A;  2A69 D;  2WB1 A;  2B63 A;  3M3G A;  3SUM A;  1WC2 A;  1Y5I A; 
#chains in the Genus database with same CATH homology
 1PT1 A;  1Y1V A;  2VPZ A;  2YU9 A;  2JA6 A;  2R92 A;  4AOK B;  1TWG A;  3DMR A;  1SMY D;  2KI8 A;  2A68 D;  5C1B A;  1Q16 A;  2JA7 A;  5FTK A;  1R27 A;  5GLF A;  5FTJ A;  2YUJ A;  1R9T A;  3QWZ A;  2VUM A;  2E2I A;  2C45 A;  3ML1 A;  1ZC1 A;  1E32 A;  1TWA A;  2NVX A;  1WLF A;  1TWC A;  2BE5 D;  2Y0S A;  3GTK A;  1PYU B;  2JIM A;  3GTG A;  2R93 A;  4AZD A;  3GTP A;  3HU2 A;  1PPY A;  4CRY G;  5T5M D;  5DYI A;  4GA5 A;  4QIW A;  5FTN A;  1PT0 A;  3HU3 A;  1OGY A;  2CW0 D;  3IR6 A;  4AAY A;  2WAQ A;  2EEO B;  1CR5 A;  3GTL A;  2A6E D;  2JIP A;  2JIR A;  1PQE A;  1DMR A;  2VPY A;  2JIQ A;  4CS0 A;  1QCS A;  1TWF A;  3PLX B;  3GTJ A;  1WCM A;  2O5J D;  1ZYR D;  1FDI A;  3QC8 A;  2V45 A;  1YNN D;  3TM7 B;  4DMR A;  1H5N A;  1Y4Z A;  2PMZ A;  1YNJ D;  2JIO A;  1G8J A;  1SFO A;  2E7Z A;  3O5A A;  2E2H A;  3CQZ A;  1SIW A;  1I3Q A;  3IR5 A;  3H0G A;  4KDI A;  1E18 A;  5DYG A;  4D7Z B;  3CZB A;  2PI8 A;  3GTQ A;  2AE0 X;  2PJH B;  4KLN A;  5FTL A;  1I50 A;  4GA6 A;  5B6C A;  1IW7 D;  3GTM A;  3HU1 A;  3GTO A;  2NYA A;  1TWH A;  5T5I D;  1E5V A;  2R7Z A;  1KQG A;  3TIW A;  4KO8 A;  2NVY A;  1G8K A;  3OUG A;  5FTM A;  1DMS A;  1AA6 A;  1KQF A;  1UHE A;  2G6G A;  5C18 A;  2V3V A;  3HKZ A;  1PQH A;  2PJJ A;  2GAE A;  2PIC A;  2JA5 A;  1EU1 A;  2IV2 X;  1S3S A;  1UHD A;  4KOD A;  3QQ7 A;  2A6H D;  5EPP A;  1H0H A;  2PNW A;  3CF2 A;  4C2M A;  1R7R A;  1QDN A;  4RV0 A;  1TMO A;  2DMR A;  3FKI A;  2G5D A;  2VPX A;  1PQF A;  2NAP A;  1CZ5 A;  4KDL A;  3IR7 A;  1FDO A;  2VPW A;  1E60 A;  1E61 A;  1Y1W A;  1AW8 B;  1CZ4 A;  1K83 A;  1PYQ A;  1VC3 B;  4CRZ A;  1YLE A;  3QQ8 A;  4AON B;  4AYB A;  2A69 D;  2WB1 A;  2B63 A;  4NOH A;  1Y5I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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