1PYQA

Unprocessed aspartate decarboxylase mutant, with alanine inserted at position 24
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
120
structure length
120
Chain Sequence
PRGSMIRTMLQGKLHRVKVTHADLHYEAGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Aspartate 1-decarboxylase
publication title Structural Constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
source organism Escherichia coli
total genus 38
structure length 120
sequence length 120
chains with identical sequence B
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-07-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1pyqA00
1AA6A 1Y1WA 1I3QA 1PQFA 2NVXA 5T5MD 5C18A 2JIMA 1PYQA 4GA6A 1PPYA 2JA6A 1S3SA 1CZ5A 1R7RA 1E18A 1OGYA 5GLFA 4D7ZB 1PQHA 4QIWA 4CS0A 4CRYG 5FTKA 3QQ7A 4AONB 1E32A 3FKIA 5FTLA 2JA7A 3HU3A 3PLXB 3QQ8A 2JIQA 3GTMA 1E60A 2JIPA 1Y4ZA 1KQFA 1UHEA 3IR6A 4KO8A 5FTNA 3IR5A 1DMRA 2VPXA 4CRZA 2VUMA 1K83A 4KLNA 1TWAA 2B63A 2VPWA 4KDLA 1SFOA 1VC3B 4RV0A 3GTQA 5B6CA 1H5NA 4KODA 1R9TA 3DMRA 2NYAA 3QC8A 2E2HA 1TMOA 2NAPA 3ML1A 1FDIA 1WLFA 1WCMA 2C45A 5DYGA 2JIOA 3TM7B 1QCSA 1PT1A 1PQEA 4DMRA 3O5AA 4AZDA 2WAQA 3H0GA 3IR7A 2IV2X 1QDNA 1UHDA 4AAYA 2YU9A 5DYIA 2R93A 3GTGA 1TWHA 1Y1VA 1Q16A 3HU1A 1SIWA 2NVYA 1Y5IA 1G8KA 3CF2A 2WB1A 3OUGA 3QWZA 3GTOA 3GTJA 4AYBA 1CR5A 1YLEA 2VPYA 1KQGA 2DMRA 4AOKB 3CQZA 2JA5A 2KI8A 2PMZA 1TWGA 3GTKA 5EPPA 3TIWA 2V45A 1H0HA 1TWCA 1AW8B 1EU1A 2E2IA 5FTMA 1TWFA 2PJHB 4C2MA 1FDOA 2EEOB 5FTJA 3HU2A 2Y0SA 3GTLA 2R7ZA 1DMSA 2E7ZA 5T5ID 3GTPA 2R92A 1PYUB 3HKZA 5C1BA 1E5VA 1I50A 1G8JA 1R27A 1IW7D 4GA5A 2JIRA 2VPZA 1PT0A 4KDIA 2V3VA 1E61A 1CZ4A
chains in the Genus database with same CATH superfamily
1AA6A 1Y1WA 4L48A 1I3QA 1PQFA 1OA7A 2NVXA 5T5MD 2YUJA 5C18A 3CZBA 2JIMA 1PYQA 1L8FA 3X2MA 4GA6A 1PPYA 4JS7A 2JA6A 1S3SA 1CZ5A 1R7RA 1E18A 1OGYA 5GLFA 4D7ZB 1PQHA 4QIWA 3ENGA 4ZM7A 4CS0A 4CRYG 4JCWA 5FTKA 3QQ7A 4AONB 1E32A 3FKIA 2V3VA 4FG4A 5FTLA 2JA7A 5GLYA 2PJJA 3HU3A 3PLXB 3QQ8A 5H4UA 2GAEA 2JIQA 2PNWA 3GTMA 4JP6A 1E60A 2JIPA 3SUJA 1Y4ZA 1KQFA 3SUKA 5GM9A 1UHEA 3X2HA 3X2JA 3IR6A 4KO8A 5FTNA 3X2LA 3M3GA 3IR5A 1DMRA 2VPXA 4CRZA 2VUMA 1K83A 4KLNA 1TWAA 2B63A 2VPWA 4KDLA 1SFOA 1VC3B 4RV0A 3X2PA 5B6CA 3GTQA 1H5NA 4KODA 3SUMA 1R9TA 3DMRA 1YNJD 2NYAA 3QC8A 2E2HA 1TMOA 2NAPA 2A69D 2BE5D 3ML1A 4AVRA 1N10A 4JJOA 1FDIA 1WLFA 1WCMA 2C45A 5DYGA 2JIOA 1OA9A 2G6GA 3TM7B 4NOHA 1QCSA 1PT1A 1PQEA 4DMRA 2G5DA 3O5AA 4AZDA 2WAQA 1SMYD 3H0GA 3IR7A 2IV2X 1QDNA 1UHDA 2PI8A 3X2NA 4AAYA 3D30A 2YU9A 1ZYRD 2PICA 5DYIA 2R93A 3GTGA 1WC2A 1TWHA 5GLXA 1Y1VA 1Q16A 3HU1A 3X2OA 4FERA 1SIWA 2NVYA 4JP7A 1Y5IA 1G8KA 1BW3A 3CF2A 2WB1A 3OUGA 3X2KA 2KQAA 3QWZA 3GTOA 3GTJA 2O5JD 4AYBA 1CR5A 1YLEA 2VPYA 3X2IA 2HCZX 2DMRA 4AOKB 3CQZA 1KQGA 2JA5A 2KI8A 2PMZA 2CW0D 1TWGA 3GTKA 5EPPA 3TIWA 2V45A 1H0HA 1TWCA 2A68D 1AW8B 1EU1A 2E2IA 1HD5A 4ENGA 5FTMA 1ZC1A 1TWFA 2PJHB 4C2MA 1FDOA 2EEOB 5FTJA 3HU2A 2Y0SA 3GTLA 2R7ZA 1DMSA 1YNND 2A6HD 2ENGA 2E7ZA 5T5ID 3GTPA 2R92A 1PYUB 3HKZA 5C1BA 1E5VA 1I50A 1G8JA 2AE0X 3SULA 3X2GA 1R27A 4FFTA 1IW7D 1BW4A 4GA5A 2JIRA 2VPZA 1PT0A 4FG2A 4KDIA 2A6ED 2BH0A 1E61A 1CZ4A
chains in the Genus database with same CATH topology
1AA6A 1Y1WA 1I3QA 1PQFA 2NVXA 5T5MD 2YUJA 5C18A 3CZBA 2JIMA 1PYQA 4GA6A 1PPYA 2JA6A 1S3SA 1CZ5A 1R7RA 1E18A 1OGYA 5GLFA 4D7ZB 1PQHA 4QIWA 4CS0A 4CRYG 5FTKA 3QQ7A 4AONB 1E32A 3FKIA 5FTLA 2JA7A 2PJJA 3HU3A 3PLXB 3QQ8A 2GAEA 2JIQA 2PNWA 3GTMA 1E60A 2JIPA 1Y4ZA 1KQFA 1UHEA 3IR6A 4KO8A 5FTNA 3IR5A 1DMRA 2VPXA 4CRZA 2VUMA 1K83A 4KLNA 1TWAA 2B63A 2VPWA 4KDLA 1SFOA 1VC3B 4RV0A 3GTQA 5B6CA 1H5NA 4KODA 1R9TA 3DMRA 1YNJD 2NYAA 3QC8A 2E2HA 2NAPA 1TMOA 2A69D 2BE5D 3ML1A 1FDIA 1WLFA 1WCMA 2C45A 5DYGA 2JIOA 3TM7B 2G6GA 4NOHA 1QCSA 1PT1A 1PQEA 4DMRA 2G5DA 3O5AA 4AZDA 2WAQA 1SMYD 3H0GA 3IR7A 2IV2X 1QDNA 1UHDA 2PI8A 4AAYA 2YU9A 1ZYRD 2PICA 5DYIA 2R93A 3GTGA 1TWHA 1Y1VA 1Q16A 3HU1A 1SIWA 2NVYA 1Y5IA 1G8KA 3CF2A 2WB1A 3OUGA 3QWZA 3GTOA 3GTJA 2O5JD 4AYBA 1CR5A 1YLEA 2VPYA 1KQGA 2DMRA 4AOKB 3CQZA 2JA5A 2KI8A 2PMZA 2CW0D 1TWGA 3GTKA 5EPPA 3TIWA 2V45A 1H0HA 1TWCA 2A68D 1AW8B 1EU1A 2E2IA 5FTMA 1ZC1A 1TWFA 2PJHB 4C2MA 1FDOA 2EEOB 5FTJA 3HU2A 2Y0SA 3GTLA 2R7ZA 1DMSA 1YNND 2A6HD 2E7ZA 5T5ID 3GTPA 2R92A 1PYUB 3HKZA 5C1BA 1E5VA 1I50A 1G8JA 2AE0X 1R27A 1IW7D 4GA5A 2JIRA 2VPZA 1PT0A 4KDIA 2A6ED 2V3VA 1E61A 1CZ4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AA6 A;  1Y1W A;  1I3Q A;  1PQF A;  2NVX A;  5T5M D;  5C18 A;  2JIM A;  1PYQ A;  4GA6 A;  1PPY A;  2JA6 A;  1S3S A;  1CZ5 A;  1R7R A;  1E18 A;  1OGY A;  5GLF A;  4D7Z B;  1PQH A;  4QIW A;  4CS0 A;  4CRY G;  5FTK A;  3QQ7 A;  4AON B;  1E32 A;  3FKI A;  5FTL A;  2JA7 A;  3HU3 A;  3PLX B;  3QQ8 A;  2JIQ A;  3GTM A;  1E60 A;  2JIP A;  1Y4Z A;  1KQF A;  1UHE A;  3IR6 A;  4KO8 A;  5FTN A;  3IR5 A;  1DMR A;  2VPX A;  4CRZ A;  2VUM A;  1K83 A;  4KLN A;  1TWA A;  2B63 A;  2VPW A;  4KDL A;  1SFO A;  1VC3 B;  4RV0 A;  3GTQ A;  5B6C A;  1H5N A;  4KOD A;  1R9T A;  3DMR A;  2NYA A;  3QC8 A;  2E2H A;  1TMO A;  2NAP A;  3ML1 A;  1FDI A;  1WLF A;  1WCM A;  2C45 A;  5DYG A;  2JIO A;  3TM7 B;  1QCS A;  1PT1 A;  1PQE A;  4DMR A;  3O5A A;  4AZD A;  2WAQ A;  3H0G A;  3IR7 A;  2IV2 X;  1QDN A;  1UHD A;  4AAY A;  2YU9 A;  5DYI A;  2R93 A;  3GTG A;  1TWH A;  1Y1V A;  1Q16 A;  3HU1 A;  1SIW A;  2NVY A;  1Y5I A;  1G8K A;  3CF2 A;  2WB1 A;  3OUG A;  3QWZ A;  3GTO A;  3GTJ A;  4AYB A;  1CR5 A;  1YLE A;  2VPY A;  1KQG A;  2DMR A;  4AOK B;  3CQZ A;  2JA5 A;  2KI8 A;  2PMZ A;  1TWG A;  3GTK A;  5EPP A;  3TIW A;  2V45 A;  1H0H A;  1TWC A;  1AW8 B;  1EU1 A;  2E2I A;  5FTM A;  1TWF A;  2PJH B;  4C2M A;  1FDO A;  2EEO B;  5FTJ A;  3HU2 A;  2Y0S A;  3GTL A;  2R7Z A;  1DMS A;  2E7Z A;  5T5I D;  3GTP A;  2R92 A;  1PYU B;  3HKZ A;  5C1B A;  1E5V A;  1I50 A;  1G8J A;  1R27 A;  1IW7 D;  4GA5 A;  2JIR A;  2VPZ A;  1PT0 A;  4KDI A;  2V3V A;  1E61 A;  1CZ4 A; 
#chains in the Genus database with same CATH topology
 1AA6 A;  1Y1W A;  4L48 A;  1I3Q A;  1PQF A;  1OA7 A;  2NVX A;  5T5M D;  2YUJ A;  5C18 A;  3CZB A;  2JIM A;  1PYQ A;  1L8F A;  3X2M A;  4GA6 A;  1PPY A;  4JS7 A;  2JA6 A;  1S3S A;  1CZ5 A;  1R7R A;  1E18 A;  1OGY A;  5GLF A;  4D7Z B;  1PQH A;  4QIW A;  3ENG A;  4ZM7 A;  4CS0 A;  4CRY G;  4JCW A;  5FTK A;  3QQ7 A;  4AON B;  1E32 A;  3FKI A;  2V3V A;  4FG4 A;  5FTL A;  2JA7 A;  5GLY A;  2PJJ A;  3HU3 A;  3PLX B;  3QQ8 A;  5H4U A;  2GAE A;  2JIQ A;  2PNW A;  3GTM A;  4JP6 A;  1E60 A;  2JIP A;  3SUJ A;  1Y4Z A;  1KQF A;  3SUK A;  5GM9 A;  1UHE A;  3X2H A;  3X2J A;  3IR6 A;  4KO8 A;  5FTN A;  3X2L A;  3M3G A;  3IR5 A;  1DMR A;  2VPX A;  4CRZ A;  2VUM A;  1K83 A;  4KLN A;  1TWA A;  2B63 A;  2VPW A;  4KDL A;  1SFO A;  1VC3 B;  4RV0 A;  3X2P A;  5B6C A;  3GTQ A;  1H5N A;  4KOD A;  3SUM A;  1R9T A;  3DMR A;  1YNJ D;  2NYA A;  3QC8 A;  2E2H A;  1TMO A;  2NAP A;  2A69 D;  2BE5 D;  3ML1 A;  4AVR A;  1N10 A;  4JJO A;  1FDI A;  1WLF A;  1WCM A;  2C45 A;  5DYG A;  2JIO A;  1OA9 A;  2G6G A;  3TM7 B;  4NOH A;  1QCS A;  1PT1 A;  1PQE A;  4DMR A;  2G5D A;  3O5A A;  4AZD A;  2WAQ A;  1SMY D;  3H0G A;  3IR7 A;  2IV2 X;  1QDN A;  1UHD A;  2PI8 A;  3X2N A;  4AAY A;  3D30 A;  2YU9 A;  1ZYR D;  2PIC A;  5DYI A;  2R93 A;  3GTG A;  1WC2 A;  1TWH A;  5GLX A;  1Y1V A;  1Q16 A;  3HU1 A;  3X2O A;  4FER A;  1SIW A;  2NVY A;  4JP7 A;  1Y5I A;  1G8K A;  1BW3 A;  3CF2 A;  2WB1 A;  3OUG A;  3X2K A;  2KQA A;  3QWZ A;  3GTO A;  3GTJ A;  2O5J D;  4AYB A;  1CR5 A;  1YLE A;  2VPY A;  3X2I A;  2HCZ X;  2DMR A;  4AOK B;  3CQZ A;  1KQG A;  2JA5 A;  2KI8 A;  2PMZ A;  2CW0 D;  1TWG A;  3GTK A;  5EPP A;  3TIW A;  2V45 A;  1H0H A;  1TWC A;  2A68 D;  1AW8 B;  1EU1 A;  2E2I A;  1HD5 A;  4ENG A;  5FTM A;  1ZC1 A;  1TWF A;  2PJH B;  4C2M A;  1FDO A;  2EEO B;  5FTJ A;  3HU2 A;  2Y0S A;  3GTL A;  2R7Z A;  1DMS A;  1YNN D;  2A6H D;  2ENG A;  2E7Z A;  5T5I D;  3GTP A;  2R92 A;  1PYU B;  3HKZ A;  5C1B A;  1E5V A;  1I50 A;  1G8J A;  2AE0 X;  3SUL A;  3X2G A;  1R27 A;  4FFT A;  1IW7 D;  1BW4 A;  4GA5 A;  2JIR A;  2VPZ A;  1PT0 A;  4FG2 A;  4KDI A;  2A6E D;  2BH0 A;  1E61 A;  1CZ4 A; 
#chains in the Genus database with same CATH homology
 1AA6 A;  1Y1W A;  1I3Q A;  1PQF A;  2NVX A;  5T5M D;  2YUJ A;  5C18 A;  3CZB A;  2JIM A;  1PYQ A;  4GA6 A;  1PPY A;  2JA6 A;  1S3S A;  1CZ5 A;  1R7R A;  1E18 A;  1OGY A;  5GLF A;  4D7Z B;  1PQH A;  4QIW A;  4CS0 A;  4CRY G;  5FTK A;  3QQ7 A;  4AON B;  1E32 A;  3FKI A;  5FTL A;  2JA7 A;  2PJJ A;  3HU3 A;  3PLX B;  3QQ8 A;  2GAE A;  2JIQ A;  2PNW A;  3GTM A;  1E60 A;  2JIP A;  1Y4Z A;  1KQF A;  1UHE A;  3IR6 A;  4KO8 A;  5FTN A;  3IR5 A;  1DMR A;  2VPX A;  4CRZ A;  2VUM A;  1K83 A;  4KLN A;  1TWA A;  2B63 A;  2VPW A;  4KDL A;  1SFO A;  1VC3 B;  4RV0 A;  3GTQ A;  5B6C A;  1H5N A;  4KOD A;  1R9T A;  3DMR A;  1YNJ D;  2NYA A;  3QC8 A;  2E2H A;  2NAP A;  1TMO A;  2A69 D;  2BE5 D;  3ML1 A;  1FDI A;  1WLF A;  1WCM A;  2C45 A;  5DYG A;  2JIO A;  3TM7 B;  2G6G A;  4NOH A;  1QCS A;  1PT1 A;  1PQE A;  4DMR A;  2G5D A;  3O5A A;  4AZD A;  2WAQ A;  1SMY D;  3H0G A;  3IR7 A;  2IV2 X;  1QDN A;  1UHD A;  2PI8 A;  4AAY A;  2YU9 A;  1ZYR D;  2PIC A;  5DYI A;  2R93 A;  3GTG A;  1TWH A;  1Y1V A;  1Q16 A;  3HU1 A;  1SIW A;  2NVY A;  1Y5I A;  1G8K A;  3CF2 A;  2WB1 A;  3OUG A;  3QWZ A;  3GTO A;  3GTJ A;  2O5J D;  4AYB A;  1CR5 A;  1YLE A;  2VPY A;  1KQG A;  2DMR A;  4AOK B;  3CQZ A;  2JA5 A;  2KI8 A;  2PMZ A;  2CW0 D;  1TWG A;  3GTK A;  5EPP A;  3TIW A;  2V45 A;  1H0H A;  1TWC A;  2A68 D;  1AW8 B;  1EU1 A;  2E2I A;  5FTM A;  1ZC1 A;  1TWF A;  2PJH B;  4C2M A;  1FDO A;  2EEO B;  5FTJ A;  3HU2 A;  2Y0S A;  3GTL A;  2R7Z A;  1DMS A;  1YNN D;  2A6H D;  2E7Z A;  5T5I D;  3GTP A;  2R92 A;  1PYU B;  3HKZ A;  5C1B A;  1E5V A;  1I50 A;  1G8J A;  2AE0 X;  1R27 A;  1IW7 D;  4GA5 A;  2JIR A;  2VPZ A;  1PT0 A;  4KDI A;  2A6E D;  2V3V A;  1E61 A;  1CZ4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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