1PPYA

Native precursor of pyruvoyl dependent aspartate decarboxylase
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
118
structure length
117
Chain Sequence
b'MIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Aspartate 1-decarboxylase precursor
molecule tags Lyase
source organism Escherichia coli
publication title Structural constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
total genus 33
structure length 117
sequence length 118
chains with identical sequence B
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-06-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1ppyA00
1PYUB 2Y0SA 3IR5A 2VPWA 5DYIA 2JIRA 5FTLA 2R7ZA 1AA6A 1QDNA 4KODA 2IV2X 4KDLA 1OGYA 2VPZA 3GTPA 1UHDA 2B63A 3HU3A 1PYQA 3DMRA 2VPYA 4AZDA 2PJHB 3GTJA 1WLFA 4KO8A 2R93A 1TWAA 2JIQA 1KQFA 1TMOA 3TM7B 2JA5A 1PT1A 1DMSA 1Y5IA 1PPYA 1SFOA 1QCSA 2NAPA 3H0GA 4GA6A 3GTLA 2EEOB 2KI8A 1KQGA 1R27A 1CZ5A 1Y1VA 1R7RA 1VC3B 3GTOA 1YLEA 2DMRA 2YU9A 3HU1A 4DMRA 1S3SA 3PLXB 4CRZA 3IR6A 2JIOA 2NYAA 1PT0A 1TWFA 3FKIA 2VUMA 5GLFA 3TIWA 5C18A 1SIWA 5T5ID 5DYGA 1TWHA 3GTKA 1PQFA 3IR7A 3GTMA 2JIMA 2V45A 3OUGA 2NVXA 3QWZA 5EPPA 4AYBA 2JA6A 4AOKB 1Y1WA 1CR5A 3HKZA 3CQZA 1TWCA 1K83A 1E32A 1E61A 1FDIA 2NVYA 1E60A 2PMZA 1TWGA 1DMRA 1I3QA 4C2MA 3CF2A 5FTMA 4RV0A 2WAQA 1EU1A 4GA5A 1AW8B 4CS0A 4AAYA 1WCMA 2JIPA 2E2IA 1IW7D 5B6CA 2V3VA 2E7ZA 3QQ7A 2R92A 2C45A 3HU2A 5FTKA 2E2HA 1E18A 1CZ4A 4KLNA 3O5AA 1Q16A 5FTJA 1PQEA 3QQ8A 1I50A 3ML1A 4QIWA 1G8KA 3QC8A 4CRYG 4AONB 5T5MD 2JA7A 1FDOA 1G8JA 1Y4ZA 1H0HA 5FTNA 5C1BA 3GTGA 1UHEA 2WB1A 1PQHA 1R9TA 1E5VA 4D7ZB 2VPXA 4KDIA 1H5NA 3GTQA
chains in the Genus database with same CATH superfamily
1PYUB 2Y0SA 2AE0X 3IR5A 2VPWA 5DYIA 2A6ED 3SUMA 2JIRA 5GLXA 2GAEA 2G6GA 3X2GA 5FTLA 1AA6A 2R7ZA 1WC2A 1QDNA 4JP6A 4KODA 2IV2X 4KDLA 3SUKA 1OGYA 2VPZA 3GTPA 1UHDA 2ENGA 2B63A 3HU3A 1PYQA 2HCZX 3DMRA 2VPYA 4L48A 4AZDA 2PJHB 3GTJA 1WLFA 4KO8A 2R93A 1TWAA 2JIQA 1KQFA 1TMOA 3TM7B 2JA5A 1PT1A 1DMSA 1Y5IA 2BH0A 1L8FA 1PPYA 1YNND 1BW3A 1SFOA 1QCSA 2NAPA 3H0GA 4GA6A 3GTLA 2EEOB 2KI8A 3M3GA 4FFTA 3X2MA 1KQGA 2PI8A 1R27A 1CZ5A 1Y1VA 4JP7A 1R7RA 3X2JA 1VC3B 3GTOA 1YLEA 4AVRA 2DMRA 1BW4A 2YU9A 3HU1A 2A6HD 4DMRA 1S3SA 3PLXB 4CRZA 4FG2A 4NOHA 3IR6A 2JIOA 1OA7A 2NYAA 1PT0A 1TWFA 3FKIA 2PICA 2VUMA 5GLFA 3TIWA 5C18A 2KQAA 4JS7A 1SIWA 3X2KA 5T5ID 5DYGA 1HD5A 1TWHA 1SMYD 3GTKA 1PQFA 3IR7A 3GTMA 2JIMA 2V45A 3OUGA 4FG4A 2NVXA 3D30A 3QWZA 5EPPA 3X2LA 4AYBA 5GLYA 2JA6A 1N10A 3X2HA 4AOKB 1CR5A 1Y1WA 4JCWA 3HKZA 3CQZA 1TWCA 1K83A 2CW0D 2YUJA 1E32A 1E61A 3SUJA 3CZBA 2BE5D 1FDIA 1ZC1A 1E60A 2NVYA 2PMZA 3X2NA 1TWGA 1DMRA 3X2OA 1I3QA 4C2MA 3CF2A 5FTMA 3ENGA 4RV0A 4FERA 4JJOA 2WAQA 1EU1A 4GA5A 1AW8B 2PJJA 4CS0A 2PNWA 4AAYA 1WCMA 2JIPA 2O5JD 2E2IA 1IW7D 5B6CA 3X2IA 2V3VA 5H4UA 1ZYRD 2E7ZA 1OA9A 2A69D 4ZM7A 3QQ7A 2R92A 2C45A 3HU2A 5FTKA 2E2HA 1E18A 1CZ4A 4KLNA 3O5AA 1Q16A 2G5DA 5GM9A 1YNJD 1PQEA 3QQ8A 5FTJA 1I50A 3ML1A 4QIWA 1G8KA 3QC8A 4CRYG 4AONB 5T5MD 2JA7A 1FDOA 3X2PA 1G8JA 1Y4ZA 1H0HA 5FTNA 5C1BA 3GTGA 1UHEA 2WB1A 1PQHA 2A68D 1R9TA 1E5VA 4D7ZB 2VPXA 4KDIA 4ENGA 1H5NA 3GTQA 3SULA
chains in the Genus database with same CATH topology
1PYUB 2Y0SA 2AE0X 3IR5A 2VPWA 5DYIA 2A6ED 2JIRA 2GAEA 2G6GA 5FTLA 2R7ZA 1AA6A 1QDNA 4KODA 2IV2X 4KDLA 1OGYA 2VPZA 3GTPA 1UHDA 2B63A 3HU3A 1PYQA 3DMRA 2VPYA 4AZDA 2PJHB 3GTJA 1WLFA 4KO8A 2R93A 1TWAA 2JIQA 1KQFA 1TMOA 3TM7B 2JA5A 1PT1A 1DMSA 1Y5IA 1PPYA 1YNND 1SFOA 1QCSA 2NAPA 3H0GA 4GA6A 3GTLA 2EEOB 2KI8A 1KQGA 2PI8A 1R27A 1CZ5A 1Y1VA 1R7RA 1VC3B 3GTOA 1YLEA 2DMRA 2YU9A 3HU1A 2A6HD 4DMRA 1S3SA 3PLXB 4CRZA 4NOHA 3IR6A 2JIOA 2NYAA 1PT0A 1TWFA 3FKIA 2PICA 2VUMA 5GLFA 3TIWA 5C18A 1SIWA 5T5ID 5DYGA 1TWHA 1SMYD 3GTKA 1PQFA 3IR7A 3GTMA 2JIMA 2V45A 3OUGA 2NVXA 3QWZA 5EPPA 4AYBA 2JA6A 4AOKB 1Y1WA 1CR5A 3HKZA 3CQZA 1TWCA 1K83A 2CW0D 2YUJA 1E32A 1E61A 3CZBA 2BE5D 1FDIA 1ZC1A 1E60A 2NVYA 2PMZA 1TWGA 1DMRA 1I3QA 4C2MA 3CF2A 5FTMA 4RV0A 2WAQA 1EU1A 4GA5A 1AW8B 2PJJA 4CS0A 2PNWA 4AAYA 1WCMA 2JIPA 2O5JD 2E2IA 1IW7D 5B6CA 2V3VA 1ZYRD 2E7ZA 2A69D 3QQ7A 2R92A 2C45A 3HU2A 5FTKA 2E2HA 1E18A 1CZ4A 4KLNA 3O5AA 1Q16A 2G5DA 1YNJD 1PQEA 3QQ8A 5FTJA 1I50A 3ML1A 4QIWA 1G8KA 3QC8A 4CRYG 4AONB 5T5MD 2JA7A 1FDOA 1G8JA 1Y4ZA 1H0HA 5FTNA 5C1BA 3GTGA 1UHEA 2WB1A 1PQHA 2A68D 1R9TA 1E5VA 4D7ZB 2VPXA 4KDIA 1H5NA 3GTQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PYU B;  2Y0S A;  3IR5 A;  2VPW A;  5DYI A;  2JIR A;  5FTL A;  2R7Z A;  1AA6 A;  1QDN A;  4KOD A;  2IV2 X;  4KDL A;  1OGY A;  2VPZ A;  3GTP A;  1UHD A;  2B63 A;  3HU3 A;  1PYQ A;  3DMR A;  2VPY A;  4AZD A;  2PJH B;  3GTJ A;  1WLF A;  4KO8 A;  2R93 A;  1TWA A;  2JIQ A;  1KQF A;  1TMO A;  3TM7 B;  2JA5 A;  1PT1 A;  1DMS A;  1Y5I A;  1PPY A;  1SFO A;  1QCS A;  2NAP A;  3H0G A;  4GA6 A;  3GTL A;  2EEO B;  2KI8 A;  1KQG A;  1R27 A;  1CZ5 A;  1Y1V A;  1R7R A;  1VC3 B;  3GTO A;  1YLE A;  2DMR A;  2YU9 A;  3HU1 A;  4DMR A;  1S3S A;  3PLX B;  4CRZ A;  3IR6 A;  2JIO A;  2NYA A;  1PT0 A;  1TWF A;  3FKI A;  2VUM A;  5GLF A;  3TIW A;  5C18 A;  1SIW A;  5T5I D;  5DYG A;  1TWH A;  3GTK A;  1PQF A;  3IR7 A;  3GTM A;  2JIM A;  2V45 A;  3OUG A;  2NVX A;  3QWZ A;  5EPP A;  4AYB A;  2JA6 A;  4AOK B;  1Y1W A;  1CR5 A;  3HKZ A;  3CQZ A;  1TWC A;  1K83 A;  1E32 A;  1E61 A;  1FDI A;  2NVY A;  1E60 A;  2PMZ A;  1TWG A;  1DMR A;  1I3Q A;  4C2M A;  3CF2 A;  5FTM A;  4RV0 A;  2WAQ A;  1EU1 A;  4GA5 A;  1AW8 B;  4CS0 A;  4AAY A;  1WCM A;  2JIP A;  2E2I A;  1IW7 D;  5B6C A;  2V3V A;  2E7Z A;  3QQ7 A;  2R92 A;  2C45 A;  3HU2 A;  5FTK A;  2E2H A;  1E18 A;  1CZ4 A;  4KLN A;  3O5A A;  1Q16 A;  5FTJ A;  1PQE A;  3QQ8 A;  1I50 A;  3ML1 A;  4QIW A;  1G8K A;  3QC8 A;  4CRY G;  4AON B;  5T5M D;  2JA7 A;  1FDO A;  1G8J A;  1Y4Z A;  1H0H A;  5FTN A;  5C1B A;  3GTG A;  1UHE A;  2WB1 A;  1PQH A;  1R9T A;  1E5V A;  4D7Z B;  2VPX A;  4KDI A;  1H5N A;  3GTQ A; 
#chains in the Genus database with same CATH topology
 1PYU B;  2Y0S A;  2AE0 X;  3IR5 A;  2VPW A;  5DYI A;  2A6E D;  3SUM A;  2JIR A;  5GLX A;  2GAE A;  2G6G A;  3X2G A;  5FTL A;  1AA6 A;  2R7Z A;  1WC2 A;  1QDN A;  4JP6 A;  4KOD A;  2IV2 X;  4KDL A;  3SUK A;  1OGY A;  2VPZ A;  3GTP A;  1UHD A;  2ENG A;  2B63 A;  3HU3 A;  1PYQ A;  2HCZ X;  3DMR A;  2VPY A;  4L48 A;  4AZD A;  2PJH B;  3GTJ A;  1WLF A;  4KO8 A;  2R93 A;  1TWA A;  2JIQ A;  1KQF A;  1TMO A;  3TM7 B;  2JA5 A;  1PT1 A;  1DMS A;  1Y5I A;  2BH0 A;  1L8F A;  1PPY A;  1YNN D;  1BW3 A;  1SFO A;  1QCS A;  2NAP A;  3H0G A;  4GA6 A;  3GTL A;  2EEO B;  2KI8 A;  3M3G A;  4FFT A;  3X2M A;  1KQG A;  2PI8 A;  1R27 A;  1CZ5 A;  1Y1V A;  4JP7 A;  1R7R A;  3X2J A;  1VC3 B;  3GTO A;  1YLE A;  4AVR A;  2DMR A;  1BW4 A;  2YU9 A;  3HU1 A;  2A6H D;  4DMR A;  1S3S A;  3PLX B;  4CRZ A;  4FG2 A;  4NOH A;  3IR6 A;  2JIO A;  1OA7 A;  2NYA A;  1PT0 A;  1TWF A;  3FKI A;  2PIC A;  2VUM A;  5GLF A;  3TIW A;  5C18 A;  2KQA A;  4JS7 A;  1SIW A;  3X2K A;  5T5I D;  5DYG A;  1HD5 A;  1TWH A;  1SMY D;  3GTK A;  1PQF A;  3IR7 A;  3GTM A;  2JIM A;  2V45 A;  3OUG A;  4FG4 A;  2NVX A;  3D30 A;  3QWZ A;  5EPP A;  3X2L A;  4AYB A;  5GLY A;  2JA6 A;  1N10 A;  3X2H A;  4AOK B;  1CR5 A;  1Y1W A;  4JCW A;  3HKZ A;  3CQZ A;  1TWC A;  1K83 A;  2CW0 D;  2YUJ A;  1E32 A;  1E61 A;  3SUJ A;  3CZB A;  2BE5 D;  1FDI A;  1ZC1 A;  1E60 A;  2NVY A;  2PMZ A;  3X2N A;  1TWG A;  1DMR A;  3X2O A;  1I3Q A;  4C2M A;  3CF2 A;  5FTM A;  3ENG A;  4RV0 A;  4FER A;  4JJO A;  2WAQ A;  1EU1 A;  4GA5 A;  1AW8 B;  2PJJ A;  4CS0 A;  2PNW A;  4AAY A;  1WCM A;  2JIP A;  2O5J D;  2E2I A;  1IW7 D;  5B6C A;  3X2I A;  2V3V A;  5H4U A;  1ZYR D;  2E7Z A;  1OA9 A;  2A69 D;  4ZM7 A;  3QQ7 A;  2R92 A;  2C45 A;  3HU2 A;  5FTK A;  2E2H A;  1E18 A;  1CZ4 A;  4KLN A;  3O5A A;  1Q16 A;  2G5D A;  5GM9 A;  1YNJ D;  1PQE A;  3QQ8 A;  5FTJ A;  1I50 A;  3ML1 A;  4QIW A;  1G8K A;  3QC8 A;  4CRY G;  4AON B;  5T5M D;  2JA7 A;  1FDO A;  3X2P A;  1G8J A;  1Y4Z A;  1H0H A;  5FTN A;  5C1B A;  3GTG A;  1UHE A;  2WB1 A;  1PQH A;  2A68 D;  1R9T A;  1E5V A;  4D7Z B;  2VPX A;  4KDI A;  4ENG A;  1H5N A;  3GTQ A;  3SUL A; 
#chains in the Genus database with same CATH homology
 1PYU B;  2Y0S A;  2AE0 X;  3IR5 A;  2VPW A;  5DYI A;  2A6E D;  2JIR A;  2GAE A;  2G6G A;  5FTL A;  2R7Z A;  1AA6 A;  1QDN A;  4KOD A;  2IV2 X;  4KDL A;  1OGY A;  2VPZ A;  3GTP A;  1UHD A;  2B63 A;  3HU3 A;  1PYQ A;  3DMR A;  2VPY A;  4AZD A;  2PJH B;  3GTJ A;  1WLF A;  4KO8 A;  2R93 A;  1TWA A;  2JIQ A;  1KQF A;  1TMO A;  3TM7 B;  2JA5 A;  1PT1 A;  1DMS A;  1Y5I A;  1PPY A;  1YNN D;  1SFO A;  1QCS A;  2NAP A;  3H0G A;  4GA6 A;  3GTL A;  2EEO B;  2KI8 A;  1KQG A;  2PI8 A;  1R27 A;  1CZ5 A;  1Y1V A;  1R7R A;  1VC3 B;  3GTO A;  1YLE A;  2DMR A;  2YU9 A;  3HU1 A;  2A6H D;  4DMR A;  1S3S A;  3PLX B;  4CRZ A;  4NOH A;  3IR6 A;  2JIO A;  2NYA A;  1PT0 A;  1TWF A;  3FKI A;  2PIC A;  2VUM A;  5GLF A;  3TIW A;  5C18 A;  1SIW A;  5T5I D;  5DYG A;  1TWH A;  1SMY D;  3GTK A;  1PQF A;  3IR7 A;  3GTM A;  2JIM A;  2V45 A;  3OUG A;  2NVX A;  3QWZ A;  5EPP A;  4AYB A;  2JA6 A;  4AOK B;  1Y1W A;  1CR5 A;  3HKZ A;  3CQZ A;  1TWC A;  1K83 A;  2CW0 D;  2YUJ A;  1E32 A;  1E61 A;  3CZB A;  2BE5 D;  1FDI A;  1ZC1 A;  1E60 A;  2NVY A;  2PMZ A;  1TWG A;  1DMR A;  1I3Q A;  4C2M A;  3CF2 A;  5FTM A;  4RV0 A;  2WAQ A;  1EU1 A;  4GA5 A;  1AW8 B;  2PJJ A;  4CS0 A;  2PNW A;  4AAY A;  1WCM A;  2JIP A;  2O5J D;  2E2I A;  1IW7 D;  5B6C A;  2V3V A;  1ZYR D;  2E7Z A;  2A69 D;  3QQ7 A;  2R92 A;  2C45 A;  3HU2 A;  5FTK A;  2E2H A;  1E18 A;  1CZ4 A;  4KLN A;  3O5A A;  1Q16 A;  2G5D A;  1YNJ D;  1PQE A;  3QQ8 A;  5FTJ A;  1I50 A;  3ML1 A;  4QIW A;  1G8K A;  3QC8 A;  4CRY G;  4AON B;  5T5M D;  2JA7 A;  1FDO A;  1G8J A;  1Y4Z A;  1H0H A;  5FTN A;  5C1B A;  3GTG A;  1UHE A;  2WB1 A;  1PQH A;  2A68 D;  1R9T A;  1E5V A;  4D7Z B;  2VPX A;  4KDI A;  1H5N A;  3GTQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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