1PPYA

Native precursor of pyruvoyl dependent aspartate decarboxylase
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
118
structure length
117
Chain Sequence
MIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
source organism Escherichia coli
molecule tags Lyase
molecule keywords Aspartate 1-decarboxylase precursor
total genus 33
structure length 117
sequence length 118
chains with identical sequence B
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-06-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1ppyA00
1Y4ZA 4CRZA 2NVXA 3PLXB 1I50A 4KODA 1TWFA 2JIRA 1Q16A 4GA6A 2V45A 2VPYA 3DMRA 4GA5A 3HU3A 1G8KA 5T5MD 2VPWA 2JA6A 3GTJA 4C2MA 3HU1A 3TIWA 2Y0SA 1DMRA 2JIPA 2JIOA 5FTJA 1OGYA 3H0GA 1Y1WA 1WLFA 4KDLA 3GTOA 1PYQA 1QCSA 1H5NA 2EEOB 1IW7D 1TWAA 2NYAA 3QQ7A 2JIQA 2V3VA 4CS0A 1PYUB 1FDOA 2R7ZA 1AW8B 1R7RA 1TMOA 1PPYA 1SFOA 1CZ4A 1H0HA 1PT0A 3O5AA 3OUGA 1TWGA 4KO8A 3FKIA 2VPZA 4D7ZB 3GTLA 1QDNA 1TWHA 5FTLA 5T5ID 2NAPA 2DMRA 5C18A 1UHDA 3ML1A 1E5VA 1Y1VA 3QC8A 1CR5A 5DYGA 1KQGA 2PMZA 1R27A 3CQZA 3CF2A 5FTNA 2NVYA 3GTGA 3GTPA 1EU1A 1PQFA 1FDIA 2WB1A 4QIWA 1R9TA 3QWZA 5GLFA 2R93A 1E60A 2E2HA 1PQEA 3GTKA 2PJHB 4CRYG 3IR5A 2E7ZA 4KLNA 2YU9A 4AOKB 4AONB 3HKZA 4RV0A 1E61A 3TM7B 2VUMA 3QQ8A 2JIMA 2KI8A 2R92A 1DMSA 3IR6A 2WAQA 1Y5IA 5FTKA 3GTMA 1PT1A 4DMRA 2E2IA 1S3SA 1G8JA 2B63A 4AAYA 1TWCA 2C45A 5FTMA 1K83A 1CZ5A 5EPPA 1E18A 1VC3B 4KDIA 3GTQA 3IR7A 1KQFA 2VPXA 2JA5A 1E32A 3HU2A 2JA7A 4AZDA 1UHEA 1YLEA 5DYIA 1I3QA 5B6CA 1SIWA 1AA6A 1PQHA 2IV2X 5C1BA 1WCMA 4AYBA
chains in the Genus database with same CATH superfamily
1SMYD 1Y4ZA 4CRZA 2NVXA 3PLXB 1I50A 3ENGA 4KODA 1TWFA 2JIRA 1Q16A 4GA6A 2V45A 2VPYA 3DMRA 4GA5A 3HU3A 1G8KA 4JJOA 5T5MD 5GM9A 1BW4A 2VPWA 4FFTA 5GLYA 3X2LA 2JA6A 3GTJA 4C2MA 3HU1A 3TIWA 2Y0SA 1DMRA 2JIPA 2JIOA 5FTJA 1WC2A 4FG4A 1OGYA 3CZBA 3H0GA 1Y1WA 1WLFA 4KDLA 1N10A 3GTOA 1PYQA 2O5JD 1YNJD 1QCSA 1H5NA 2EEOB 1IW7D 1TWAA 3SUMA 2ENGA 2NYAA 3QQ7A 2JIQA 2V3VA 4JP6A 2A6ED 4CS0A 1PYUB 3X2KA 2PICA 1FDOA 2R7ZA 1AW8B 1R7RA 1TMOA 1PPYA 1BW3A 3X2MA 1SFOA 1CZ4A 1H0HA 1PT0A 2A68D 3O5AA 4JP7A 3SUKA 3X2HA 2HCZX 2CW0D 1TWGA 3OUGA 4KO8A 3SUJA 3FKIA 2VPZA 4D7ZB 3GTLA 1QDNA 1TWHA 5FTLA 5T5ID 1OA7A 2NAPA 2PI8A 2G6GA 2PNWA 3X2GA 1L8FA 2DMRA 5C18A 1UHDA 3ML1A 1E5VA 1Y1VA 2YUJA 4JS7A 3QC8A 4L48A 1CR5A 5DYGA 3X2PA 1KQGA 2PMZA 1HD5A 1R27A 3CF2A 3CQZA 2NVYA 5FTNA 3GTGA 3GTPA 1EU1A 2A6HD 1PQFA 4JCWA 2BE5D 1FDIA 2WB1A 4NOHA 1YNND 4QIWA 1R9TA 3QWZA 5GLFA 2R93A 1E60A 2E2HA 1PQEA 3GTKA 2BH0A 2PJHB 5H4UA 1ZYRD 3IR5A 4CRYG 2E7ZA 4KLNA 2PJJA 2YU9A 4AOKB 4AONB 3HKZA 4FERA 1E61A 4RV0A 3TM7B 2KQAA 2VUMA 3SULA 2AE0X 3QQ8A 2JIMA 3M3GA 2KI8A 2R92A 1DMSA 3IR6A 2GAEA 2WAQA 1Y5IA 5FTKA 3GTMA 1PT1A 4DMRA 3X2OA 2E2IA 1S3SA 3X2JA 1G8JA 4ZM7A 4ENGA 2B63A 4AAYA 1TWCA 2C45A 5FTMA 4AVRA 1K83A 1CZ5A 1ZC1A 2G5DA 4FG2A 1E18A 5EPPA 1VC3B 4KDIA 3GTQA 3IR7A 1KQFA 2VPXA 2JA5A 2A69D 1E32A 3HU2A 2JA7A 4AZDA 1UHEA 1YLEA 5DYIA 1I3QA 5B6CA 1SIWA 3X2IA 1OA9A 1AA6A 3X2NA 3D30A 1PQHA 2IV2X 5GLXA 5C1BA 1WCMA 4AYBA
chains in the Genus database with same CATH topology
1SMYD 1Y4ZA 4CRZA 2NVXA 3PLXB 1I50A 4KODA 1TWFA 2JIRA 1Q16A 4GA6A 2V45A 2VPYA 3DMRA 4GA5A 3HU3A 1G8KA 5T5MD 2VPWA 2JA6A 3GTJA 4C2MA 3HU1A 3TIWA 2Y0SA 1DMRA 2JIPA 2JIOA 5FTJA 1OGYA 3CZBA 3H0GA 1Y1WA 1WLFA 4KDLA 3GTOA 1PYQA 2O5JD 1YNJD 1QCSA 1H5NA 2EEOB 1IW7D 1TWAA 2NYAA 3QQ7A 2JIQA 2V3VA 2A6ED 4CS0A 1PYUB 2PICA 1FDOA 2R7ZA 1AW8B 1R7RA 1TMOA 1PPYA 1SFOA 1CZ4A 1H0HA 1PT0A 2A68D 3O5AA 2CW0D 1TWGA 3OUGA 4KO8A 3FKIA 2VPZA 4D7ZB 3GTLA 1QDNA 1TWHA 5FTLA 5T5ID 2NAPA 2PI8A 2G6GA 2PNWA 2DMRA 5C18A 1UHDA 3ML1A 1E5VA 1Y1VA 2YUJA 3QC8A 1CR5A 5DYGA 1KQGA 2PMZA 1R27A 3CQZA 3CF2A 5FTNA 2NVYA 3GTGA 3GTPA 1EU1A 2A6HD 1PQFA 2BE5D 1FDIA 2WB1A 4NOHA 1YNND 4QIWA 1R9TA 3QWZA 5GLFA 2R93A 1E60A 2E2HA 1PQEA 3GTKA 2PJHB 1ZYRD 3IR5A 4CRYG 2E7ZA 4KLNA 2PJJA 2YU9A 4AOKB 4AONB 3HKZA 4RV0A 1E61A 3TM7B 2VUMA 2AE0X 3QQ8A 2JIMA 2KI8A 2R92A 1DMSA 3IR6A 2GAEA 2WAQA 1Y5IA 5FTKA 3GTMA 1PT1A 4DMRA 2E2IA 1S3SA 1G8JA 2B63A 4AAYA 1TWCA 2C45A 5FTMA 1K83A 1CZ5A 1ZC1A 2G5DA 5EPPA 1E18A 1VC3B 4KDIA 3GTQA 3IR7A 1KQFA 2VPXA 2JA5A 2A69D 1E32A 3HU2A 2JA7A 4AZDA 1UHEA 1YLEA 5DYIA 1I3QA 5B6CA 1SIWA 1AA6A 1PQHA 2IV2X 5C1BA 1WCMA 4AYBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Y4Z A;  4CRZ A;  2NVX A;  3PLX B;  1I50 A;  4KOD A;  1TWF A;  2JIR A;  1Q16 A;  4GA6 A;  2V45 A;  2VPY A;  3DMR A;  4GA5 A;  3HU3 A;  1G8K A;  5T5M D;  2VPW A;  2JA6 A;  3GTJ A;  4C2M A;  3HU1 A;  3TIW A;  2Y0S A;  1DMR A;  2JIP A;  2JIO A;  5FTJ A;  1OGY A;  3H0G A;  1Y1W A;  1WLF A;  4KDL A;  3GTO A;  1PYQ A;  1QCS A;  1H5N A;  2EEO B;  1IW7 D;  1TWA A;  2NYA A;  3QQ7 A;  2JIQ A;  2V3V A;  4CS0 A;  1PYU B;  1FDO A;  2R7Z A;  1AW8 B;  1R7R A;  1TMO A;  1PPY A;  1SFO A;  1CZ4 A;  1H0H A;  1PT0 A;  3O5A A;  3OUG A;  1TWG A;  4KO8 A;  3FKI A;  2VPZ A;  4D7Z B;  3GTL A;  1QDN A;  1TWH A;  5FTL A;  5T5I D;  2NAP A;  2DMR A;  5C18 A;  1UHD A;  3ML1 A;  1E5V A;  1Y1V A;  3QC8 A;  1CR5 A;  5DYG A;  1KQG A;  2PMZ A;  1R27 A;  3CQZ A;  3CF2 A;  5FTN A;  2NVY A;  3GTG A;  3GTP A;  1EU1 A;  1PQF A;  1FDI A;  2WB1 A;  4QIW A;  1R9T A;  3QWZ A;  5GLF A;  2R93 A;  1E60 A;  2E2H A;  1PQE A;  3GTK A;  2PJH B;  4CRY G;  3IR5 A;  2E7Z A;  4KLN A;  2YU9 A;  4AOK B;  4AON B;  3HKZ A;  4RV0 A;  1E61 A;  3TM7 B;  2VUM A;  3QQ8 A;  2JIM A;  2KI8 A;  2R92 A;  1DMS A;  3IR6 A;  2WAQ A;  1Y5I A;  5FTK A;  3GTM A;  1PT1 A;  4DMR A;  2E2I A;  1S3S A;  1G8J A;  2B63 A;  4AAY A;  1TWC A;  2C45 A;  5FTM A;  1K83 A;  1CZ5 A;  5EPP A;  1E18 A;  1VC3 B;  4KDI A;  3GTQ A;  3IR7 A;  1KQF A;  2VPX A;  2JA5 A;  1E32 A;  3HU2 A;  2JA7 A;  4AZD A;  1UHE A;  1YLE A;  5DYI A;  1I3Q A;  5B6C A;  1SIW A;  1AA6 A;  1PQH A;  2IV2 X;  5C1B A;  1WCM A;  4AYB A; 
#chains in the Genus database with same CATH topology
 1SMY D;  1Y4Z A;  4CRZ A;  2NVX A;  3PLX B;  1I50 A;  3ENG A;  4KOD A;  1TWF A;  2JIR A;  1Q16 A;  4GA6 A;  2V45 A;  2VPY A;  3DMR A;  4GA5 A;  3HU3 A;  1G8K A;  4JJO A;  5T5M D;  5GM9 A;  1BW4 A;  2VPW A;  4FFT A;  5GLY A;  3X2L A;  2JA6 A;  3GTJ A;  4C2M A;  3HU1 A;  3TIW A;  2Y0S A;  1DMR A;  2JIP A;  2JIO A;  5FTJ A;  1WC2 A;  4FG4 A;  1OGY A;  3CZB A;  3H0G A;  1Y1W A;  1WLF A;  4KDL A;  1N10 A;  3GTO A;  1PYQ A;  2O5J D;  1YNJ D;  1QCS A;  1H5N A;  2EEO B;  1IW7 D;  1TWA A;  3SUM A;  2ENG A;  2NYA A;  3QQ7 A;  2JIQ A;  2V3V A;  4JP6 A;  2A6E D;  4CS0 A;  1PYU B;  3X2K A;  2PIC A;  1FDO A;  2R7Z A;  1AW8 B;  1R7R A;  1TMO A;  1PPY A;  1BW3 A;  3X2M A;  1SFO A;  1CZ4 A;  1H0H A;  1PT0 A;  2A68 D;  3O5A A;  4JP7 A;  3SUK A;  3X2H A;  2HCZ X;  2CW0 D;  1TWG A;  3OUG A;  4KO8 A;  3SUJ A;  3FKI A;  2VPZ A;  4D7Z B;  3GTL A;  1QDN A;  1TWH A;  5FTL A;  5T5I D;  1OA7 A;  2NAP A;  2PI8 A;  2G6G A;  2PNW A;  3X2G A;  1L8F A;  2DMR A;  5C18 A;  1UHD A;  3ML1 A;  1E5V A;  1Y1V A;  2YUJ A;  4JS7 A;  3QC8 A;  4L48 A;  1CR5 A;  5DYG A;  3X2P A;  1KQG A;  2PMZ A;  1HD5 A;  1R27 A;  3CF2 A;  3CQZ A;  2NVY A;  5FTN A;  3GTG A;  3GTP A;  1EU1 A;  2A6H D;  1PQF A;  4JCW A;  2BE5 D;  1FDI A;  2WB1 A;  4NOH A;  1YNN D;  4QIW A;  1R9T A;  3QWZ A;  5GLF A;  2R93 A;  1E60 A;  2E2H A;  1PQE A;  3GTK A;  2BH0 A;  2PJH B;  5H4U A;  1ZYR D;  3IR5 A;  4CRY G;  2E7Z A;  4KLN A;  2PJJ A;  2YU9 A;  4AOK B;  4AON B;  3HKZ A;  4FER A;  1E61 A;  4RV0 A;  3TM7 B;  2KQA A;  2VUM A;  3SUL A;  2AE0 X;  3QQ8 A;  2JIM A;  3M3G A;  2KI8 A;  2R92 A;  1DMS A;  3IR6 A;  2GAE A;  2WAQ A;  1Y5I A;  5FTK A;  3GTM A;  1PT1 A;  4DMR A;  3X2O A;  2E2I A;  1S3S A;  3X2J A;  1G8J A;  4ZM7 A;  4ENG A;  2B63 A;  4AAY A;  1TWC A;  2C45 A;  5FTM A;  4AVR A;  1K83 A;  1CZ5 A;  1ZC1 A;  2G5D A;  4FG2 A;  1E18 A;  5EPP A;  1VC3 B;  4KDI A;  3GTQ A;  3IR7 A;  1KQF A;  2VPX A;  2JA5 A;  2A69 D;  1E32 A;  3HU2 A;  2JA7 A;  4AZD A;  1UHE A;  1YLE A;  5DYI A;  1I3Q A;  5B6C A;  1SIW A;  3X2I A;  1OA9 A;  1AA6 A;  3X2N A;  3D30 A;  1PQH A;  2IV2 X;  5GLX A;  5C1B A;  1WCM A;  4AYB A; 
#chains in the Genus database with same CATH homology
 1SMY D;  1Y4Z A;  4CRZ A;  2NVX A;  3PLX B;  1I50 A;  4KOD A;  1TWF A;  2JIR A;  1Q16 A;  4GA6 A;  2V45 A;  2VPY A;  3DMR A;  4GA5 A;  3HU3 A;  1G8K A;  5T5M D;  2VPW A;  2JA6 A;  3GTJ A;  4C2M A;  3HU1 A;  3TIW A;  2Y0S A;  1DMR A;  2JIP A;  2JIO A;  5FTJ A;  1OGY A;  3CZB A;  3H0G A;  1Y1W A;  1WLF A;  4KDL A;  3GTO A;  1PYQ A;  2O5J D;  1YNJ D;  1QCS A;  1H5N A;  2EEO B;  1IW7 D;  1TWA A;  2NYA A;  3QQ7 A;  2JIQ A;  2V3V A;  2A6E D;  4CS0 A;  1PYU B;  2PIC A;  1FDO A;  2R7Z A;  1AW8 B;  1R7R A;  1TMO A;  1PPY A;  1SFO A;  1CZ4 A;  1H0H A;  1PT0 A;  2A68 D;  3O5A A;  2CW0 D;  1TWG A;  3OUG A;  4KO8 A;  3FKI A;  2VPZ A;  4D7Z B;  3GTL A;  1QDN A;  1TWH A;  5FTL A;  5T5I D;  2NAP A;  2PI8 A;  2G6G A;  2PNW A;  2DMR A;  5C18 A;  1UHD A;  3ML1 A;  1E5V A;  1Y1V A;  2YUJ A;  3QC8 A;  1CR5 A;  5DYG A;  1KQG A;  2PMZ A;  1R27 A;  3CQZ A;  3CF2 A;  5FTN A;  2NVY A;  3GTG A;  3GTP A;  1EU1 A;  2A6H D;  1PQF A;  2BE5 D;  1FDI A;  2WB1 A;  4NOH A;  1YNN D;  4QIW A;  1R9T A;  3QWZ A;  5GLF A;  2R93 A;  1E60 A;  2E2H A;  1PQE A;  3GTK A;  2PJH B;  1ZYR D;  3IR5 A;  4CRY G;  2E7Z A;  4KLN A;  2PJJ A;  2YU9 A;  4AOK B;  4AON B;  3HKZ A;  4RV0 A;  1E61 A;  3TM7 B;  2VUM A;  2AE0 X;  3QQ8 A;  2JIM A;  2KI8 A;  2R92 A;  1DMS A;  3IR6 A;  2GAE A;  2WAQ A;  1Y5I A;  5FTK A;  3GTM A;  1PT1 A;  4DMR A;  2E2I A;  1S3S A;  1G8J A;  2B63 A;  4AAY A;  1TWC A;  2C45 A;  5FTM A;  1K83 A;  1CZ5 A;  1ZC1 A;  2G5D A;  5EPP A;  1E18 A;  1VC3 B;  4KDI A;  3GTQ A;  3IR7 A;  1KQF A;  2VPX A;  2JA5 A;  2A69 D;  1E32 A;  3HU2 A;  2JA7 A;  4AZD A;  1UHE A;  1YLE A;  5DYI A;  1I3Q A;  5B6C A;  1SIW A;  1AA6 A;  1PQH A;  2IV2 X;  5C1B A;  1WCM A;  4AYB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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