1PPYA

Native precursor of pyruvoyl dependent aspartate decarboxylase
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
118
structure length
117
Chain Sequence
MIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Aspartate 1-decarboxylase precursor
publication title Structural constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
source organism Escherichia coli
total genus 33
structure length 117
sequence length 118
chains with identical sequence B
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-06-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1ppyA00
4DMRA 2JIPA 2Y0SA 1PQHA 3FKIA 2YU9A 2R7ZA 1TMOA 3GTJA 2E7ZA 2JIMA 1Y1VA 5FTLA 1PQFA 1QCSA 4KO8A 3GTGA 1WLFA 2VPYA 3DMRA 2JA6A 4AYBA 1PQEA 1VC3B 5DYIA 3IR5A 2JIRA 2R92A 1R27A 1R9TA 3H0GA 1R7RA 5FTMA 1DMSA 4D7ZB 1PT1A 1SFOA 1TWAA 1SIWA 3QC8A 1KQGA 1K83A 3GTQA 3QWZA 4AZDA 3GTOA 1E32A 1Q16A 3HKZA 2VPWA 2JA7A 1PYUB 1G8KA 1Y5IA 1UHEA 1OGYA 3CQZA 3CF2A 1I50A 2NVYA 1QDNA 3TIWA 4C2MA 2VUMA 1Y1WA 2PJHB 5C1BA 4GA5A 2IV2X 5C18A 1E18A 2WAQA 3QQ8A 2E2IA 1E60A 1FDOA 4KODA 3O5AA 3GTMA 2DMRA 4KDIA 4CRZA 5T5ID 4AONB 3HU1A 2NAPA 1UHDA 1CZ5A 1DMRA 2E2HA 3ML1A 4KDLA 3IR7A 4QIWA 3GTLA 1IW7D 5T5MD 2WB1A 3QQ7A 1TWGA 1KQFA 2NVXA 1TWFA 5FTJA 2V45A 1CR5A 3IR6A 4RV0A 4AAYA 1E5VA 1TWHA 1H0HA 2VPZA 4KLNA 2JIQA 4CRYG 2EEOB 1AA6A 3HU3A 3GTKA 2B63A 2KI8A 1Y4ZA 1I3QA 1S3SA 3OUGA 1WCMA 4AOKB 1G8JA 1E61A 1AW8B 2VPXA 3PLXB 5EPPA 1PPYA 5FTNA 1TWCA 2NYAA 2PMZA 4CS0A 1EU1A 5GLFA 1FDIA 2V3VA 2R93A 5DYGA 5FTKA 2JA5A 1H5NA 1PYQA 2C45A 3TM7B 1YLEA 3HU2A 4GA6A 1PT0A 5B6CA 1CZ4A 2JIOA 3GTPA
chains in the Genus database with same CATH superfamily
4DMRA 2BE5D 2JIPA 2Y0SA 1PQHA 2A68D 3FKIA 2YU9A 2R7ZA 1TMOA 2A69D 2E7ZA 3ENGA 3GTJA 2PI8A 2JIMA 1Y1VA 5FTLA 3X2KA 1PQFA 2O5JD 1QCSA 4KO8A 4L48A 3GTGA 2PJJA 1WLFA 2VPYA 3DMRA 3SUKA 2JA6A 4AYBA 1PQEA 2PICA 1VC3B 5DYIA 3IR5A 4JS7A 1WC2A 1YNND 2JIRA 2R92A 1R27A 1R9TA 3H0GA 1ZC1A 1R7RA 2ENGA 5FTMA 1DMSA 1ZYRD 4D7ZB 1PT1A 1SFOA 1TWAA 1SIWA 3QC8A 1KQGA 1K83A 3GTQA 3QWZA 4AZDA 3GTOA 1E32A 1Q16A 1BW4A 4FG2A 3X2PA 1SMYD 2VPWA 3HKZA 4NOHA 1PYUB 1G8KA 2JA7A 1Y5IA 1UHEA 1HD5A 3M3GA 4JCWA 4ENGA 1OGYA 3X2IA 4ZM7A 3CQZA 3X2HA 3CF2A 1I50A 2NVYA 5GLYA 1QDNA 3TIWA 4C2MA 2VUMA 1OA9A 1Y1WA 2PJHB 3X2GA 5C1BA 4GA5A 2IV2X 5C18A 1E18A 4JJOA 3X2JA 2WAQA 3QQ8A 2E2IA 2GAEA 1E60A 1FDOA 3SUMA 1L8FA 3O5AA 4KODA 3GTMA 2DMRA 4KDIA 4CRZA 3SUJA 5T5ID 2A6HD 3HU1A 4AONB 1OA7A 2NAPA 2G6GA 4JP6A 4FERA 1UHDA 1CZ5A 1DMRA 3X2MA 2E2HA 3ML1A 4KDLA 3IR7A 4QIWA 3GTLA 1IW7D 4FFTA 5H4UA 5T5MD 2WB1A 3QQ7A 3CZBA 1TWGA 1KQFA 2NVXA 1TWFA 5FTJA 2PNWA 2V45A 1CR5A 3IR6A 4RV0A 4FG4A 3X2OA 4AAYA 1E5VA 1TWHA 1H0HA 2VPZA 4KLNA 3SULA 2JIQA 4CRYG 1N10A 2EEOB 3X2LA 3HU3A 1AA6A 3GTKA 2KI8A 2A6ED 2B63A 1Y4ZA 1I3QA 1S3SA 2BH0A 1WCMA 3OUGA 4AOKB 1G8JA 1E61A 1AW8B 2VPXA 3PLXB 5EPPA 5GLXA 1PPYA 5FTNA 4AVRA 1TWCA 2NYAA 2PMZA 2G5DA 4CS0A 1EU1A 2AE0X 2YUJA 5GLFA 3X2NA 1FDIA 2V3VA 2R93A 1BW3A 5DYGA 5FTKA 2JA5A 1H5NA 1PYQA 2HCZX 3D30A 1YNJD 2CW0D 2C45A 3TM7B 1YLEA 3HU2A 5GM9A 4GA6A 1PT0A 5B6CA 4JP7A 2KQAA 1CZ4A 2JIOA 3GTPA
chains in the Genus database with same CATH topology
4DMRA 2BE5D 2JIPA 2Y0SA 1PQHA 2A68D 3FKIA 2YU9A 2R7ZA 1TMOA 2A69D 2E7ZA 3GTJA 2PI8A 2JIMA 1Y1VA 5FTLA 1PQFA 2O5JD 1QCSA 4KO8A 3GTGA 2PJJA 1WLFA 2VPYA 3DMRA 2JA6A 4AYBA 1PQEA 2PICA 1VC3B 5DYIA 3IR5A 1YNND 2JIRA 2R92A 1R27A 1R9TA 3H0GA 1ZC1A 1R7RA 5FTMA 1DMSA 1ZYRD 4D7ZB 1PT1A 1SFOA 1TWAA 1SIWA 3QC8A 1KQGA 1K83A 3GTQA 3QWZA 4AZDA 3GTOA 1E32A 1Q16A 1SMYD 2VPWA 3HKZA 4NOHA 1PYUB 1G8KA 2JA7A 1Y5IA 1UHEA 1OGYA 3CQZA 3CF2A 1I50A 2NVYA 1QDNA 3TIWA 4C2MA 2VUMA 1Y1WA 2PJHB 5C1BA 4GA5A 2IV2X 5C18A 1E18A 2WAQA 3QQ8A 2E2IA 2GAEA 1E60A 1FDOA 4KODA 3O5AA 3GTMA 2DMRA 4KDIA 4CRZA 5T5ID 2A6HD 3HU1A 4AONB 2NAPA 2G6GA 1UHDA 1CZ5A 1DMRA 2E2HA 3ML1A 4KDLA 3IR7A 4QIWA 3GTLA 1IW7D 5T5MD 2WB1A 3QQ7A 3CZBA 1TWGA 1KQFA 2NVXA 1TWFA 5FTJA 2PNWA 2V45A 1CR5A 3IR6A 4RV0A 4AAYA 1E5VA 1TWHA 1H0HA 2VPZA 4KLNA 2JIQA 4CRYG 2EEOB 1AA6A 3HU3A 3GTKA 2B63A 2KI8A 2A6ED 1Y4ZA 1I3QA 1S3SA 3OUGA 1WCMA 4AOKB 1G8JA 1E61A 1AW8B 2VPXA 3PLXB 5EPPA 1PPYA 5FTNA 1TWCA 2NYAA 2PMZA 2G5DA 4CS0A 1EU1A 2AE0X 2YUJA 5GLFA 1FDIA 2V3VA 2R93A 5DYGA 5FTKA 2JA5A 1H5NA 1PYQA 1YNJD 2CW0D 2C45A 3TM7B 1YLEA 3HU2A 4GA6A 1PT0A 5B6CA 1CZ4A 2JIOA 3GTPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DMR A;  2JIP A;  2Y0S A;  1PQH A;  3FKI A;  2YU9 A;  2R7Z A;  1TMO A;  3GTJ A;  2E7Z A;  2JIM A;  1Y1V A;  5FTL A;  1PQF A;  1QCS A;  4KO8 A;  3GTG A;  1WLF A;  2VPY A;  3DMR A;  2JA6 A;  4AYB A;  1PQE A;  1VC3 B;  5DYI A;  3IR5 A;  2JIR A;  2R92 A;  1R27 A;  1R9T A;  3H0G A;  1R7R A;  5FTM A;  1DMS A;  4D7Z B;  1PT1 A;  1SFO A;  1TWA A;  1SIW A;  3QC8 A;  1KQG A;  1K83 A;  3GTQ A;  3QWZ A;  4AZD A;  3GTO A;  1E32 A;  1Q16 A;  3HKZ A;  2VPW A;  2JA7 A;  1PYU B;  1G8K A;  1Y5I A;  1UHE A;  1OGY A;  3CQZ A;  3CF2 A;  1I50 A;  2NVY A;  1QDN A;  3TIW A;  4C2M A;  2VUM A;  1Y1W A;  2PJH B;  5C1B A;  4GA5 A;  2IV2 X;  5C18 A;  1E18 A;  2WAQ A;  3QQ8 A;  2E2I A;  1E60 A;  1FDO A;  4KOD A;  3O5A A;  3GTM A;  2DMR A;  4KDI A;  4CRZ A;  5T5I D;  4AON B;  3HU1 A;  2NAP A;  1UHD A;  1CZ5 A;  1DMR A;  2E2H A;  3ML1 A;  4KDL A;  3IR7 A;  4QIW A;  3GTL A;  1IW7 D;  5T5M D;  2WB1 A;  3QQ7 A;  1TWG A;  1KQF A;  2NVX A;  1TWF A;  5FTJ A;  2V45 A;  1CR5 A;  3IR6 A;  4RV0 A;  4AAY A;  1E5V A;  1TWH A;  1H0H A;  2VPZ A;  4KLN A;  2JIQ A;  4CRY G;  2EEO B;  1AA6 A;  3HU3 A;  3GTK A;  2B63 A;  2KI8 A;  1Y4Z A;  1I3Q A;  1S3S A;  3OUG A;  1WCM A;  4AOK B;  1G8J A;  1E61 A;  1AW8 B;  2VPX A;  3PLX B;  5EPP A;  1PPY A;  5FTN A;  1TWC A;  2NYA A;  2PMZ A;  4CS0 A;  1EU1 A;  5GLF A;  1FDI A;  2V3V A;  2R93 A;  5DYG A;  5FTK A;  2JA5 A;  1H5N A;  1PYQ A;  2C45 A;  3TM7 B;  1YLE A;  3HU2 A;  4GA6 A;  1PT0 A;  5B6C A;  1CZ4 A;  2JIO A;  3GTP A; 
#chains in the Genus database with same CATH topology
 4DMR A;  2BE5 D;  2JIP A;  2Y0S A;  1PQH A;  2A68 D;  3FKI A;  2YU9 A;  2R7Z A;  1TMO A;  2A69 D;  2E7Z A;  3ENG A;  3GTJ A;  2PI8 A;  2JIM A;  1Y1V A;  5FTL A;  3X2K A;  1PQF A;  2O5J D;  1QCS A;  4KO8 A;  4L48 A;  3GTG A;  2PJJ A;  1WLF A;  2VPY A;  3DMR A;  3SUK A;  2JA6 A;  4AYB A;  1PQE A;  2PIC A;  1VC3 B;  5DYI A;  3IR5 A;  4JS7 A;  1WC2 A;  1YNN D;  2JIR A;  2R92 A;  1R27 A;  1R9T A;  3H0G A;  1ZC1 A;  1R7R A;  2ENG A;  5FTM A;  1DMS A;  1ZYR D;  4D7Z B;  1PT1 A;  1SFO A;  1TWA A;  1SIW A;  3QC8 A;  1KQG A;  1K83 A;  3GTQ A;  3QWZ A;  4AZD A;  3GTO A;  1E32 A;  1Q16 A;  1BW4 A;  4FG2 A;  3X2P A;  1SMY D;  2VPW A;  3HKZ A;  4NOH A;  1PYU B;  1G8K A;  2JA7 A;  1Y5I A;  1UHE A;  1HD5 A;  3M3G A;  4JCW A;  4ENG A;  1OGY A;  3X2I A;  4ZM7 A;  3CQZ A;  3X2H A;  3CF2 A;  1I50 A;  2NVY A;  5GLY A;  1QDN A;  3TIW A;  4C2M A;  2VUM A;  1OA9 A;  1Y1W A;  2PJH B;  3X2G A;  5C1B A;  4GA5 A;  2IV2 X;  5C18 A;  1E18 A;  4JJO A;  3X2J A;  2WAQ A;  3QQ8 A;  2E2I A;  2GAE A;  1E60 A;  1FDO A;  3SUM A;  1L8F A;  3O5A A;  4KOD A;  3GTM A;  2DMR A;  4KDI A;  4CRZ A;  3SUJ A;  5T5I D;  2A6H D;  3HU1 A;  4AON B;  1OA7 A;  2NAP A;  2G6G A;  4JP6 A;  4FER A;  1UHD A;  1CZ5 A;  1DMR A;  3X2M A;  2E2H A;  3ML1 A;  4KDL A;  3IR7 A;  4QIW A;  3GTL A;  1IW7 D;  4FFT A;  5H4U A;  5T5M D;  2WB1 A;  3QQ7 A;  3CZB A;  1TWG A;  1KQF A;  2NVX A;  1TWF A;  5FTJ A;  2PNW A;  2V45 A;  1CR5 A;  3IR6 A;  4RV0 A;  4FG4 A;  3X2O A;  4AAY A;  1E5V A;  1TWH A;  1H0H A;  2VPZ A;  4KLN A;  3SUL A;  2JIQ A;  4CRY G;  1N10 A;  2EEO B;  3X2L A;  3HU3 A;  1AA6 A;  3GTK A;  2KI8 A;  2A6E D;  2B63 A;  1Y4Z A;  1I3Q A;  1S3S A;  2BH0 A;  1WCM A;  3OUG A;  4AOK B;  1G8J A;  1E61 A;  1AW8 B;  2VPX A;  3PLX B;  5EPP A;  5GLX A;  1PPY A;  5FTN A;  4AVR A;  1TWC A;  2NYA A;  2PMZ A;  2G5D A;  4CS0 A;  1EU1 A;  2AE0 X;  2YUJ A;  5GLF A;  3X2N A;  1FDI A;  2V3V A;  2R93 A;  1BW3 A;  5DYG A;  5FTK A;  2JA5 A;  1H5N A;  1PYQ A;  2HCZ X;  3D30 A;  1YNJ D;  2CW0 D;  2C45 A;  3TM7 B;  1YLE A;  3HU2 A;  5GM9 A;  4GA6 A;  1PT0 A;  5B6C A;  4JP7 A;  2KQA A;  1CZ4 A;  2JIO A;  3GTP A; 
#chains in the Genus database with same CATH homology
 4DMR A;  2BE5 D;  2JIP A;  2Y0S A;  1PQH A;  2A68 D;  3FKI A;  2YU9 A;  2R7Z A;  1TMO A;  2A69 D;  2E7Z A;  3GTJ A;  2PI8 A;  2JIM A;  1Y1V A;  5FTL A;  1PQF A;  2O5J D;  1QCS A;  4KO8 A;  3GTG A;  2PJJ A;  1WLF A;  2VPY A;  3DMR A;  2JA6 A;  4AYB A;  1PQE A;  2PIC A;  1VC3 B;  5DYI A;  3IR5 A;  1YNN D;  2JIR A;  2R92 A;  1R27 A;  1R9T A;  3H0G A;  1ZC1 A;  1R7R A;  5FTM A;  1DMS A;  1ZYR D;  4D7Z B;  1PT1 A;  1SFO A;  1TWA A;  1SIW A;  3QC8 A;  1KQG A;  1K83 A;  3GTQ A;  3QWZ A;  4AZD A;  3GTO A;  1E32 A;  1Q16 A;  1SMY D;  2VPW A;  3HKZ A;  4NOH A;  1PYU B;  1G8K A;  2JA7 A;  1Y5I A;  1UHE A;  1OGY A;  3CQZ A;  3CF2 A;  1I50 A;  2NVY A;  1QDN A;  3TIW A;  4C2M A;  2VUM A;  1Y1W A;  2PJH B;  5C1B A;  4GA5 A;  2IV2 X;  5C18 A;  1E18 A;  2WAQ A;  3QQ8 A;  2E2I A;  2GAE A;  1E60 A;  1FDO A;  4KOD A;  3O5A A;  3GTM A;  2DMR A;  4KDI A;  4CRZ A;  5T5I D;  2A6H D;  3HU1 A;  4AON B;  2NAP A;  2G6G A;  1UHD A;  1CZ5 A;  1DMR A;  2E2H A;  3ML1 A;  4KDL A;  3IR7 A;  4QIW A;  3GTL A;  1IW7 D;  5T5M D;  2WB1 A;  3QQ7 A;  3CZB A;  1TWG A;  1KQF A;  2NVX A;  1TWF A;  5FTJ A;  2PNW A;  2V45 A;  1CR5 A;  3IR6 A;  4RV0 A;  4AAY A;  1E5V A;  1TWH A;  1H0H A;  2VPZ A;  4KLN A;  2JIQ A;  4CRY G;  2EEO B;  1AA6 A;  3HU3 A;  3GTK A;  2B63 A;  2KI8 A;  2A6E D;  1Y4Z A;  1I3Q A;  1S3S A;  3OUG A;  1WCM A;  4AOK B;  1G8J A;  1E61 A;  1AW8 B;  2VPX A;  3PLX B;  5EPP A;  1PPY A;  5FTN A;  1TWC A;  2NYA A;  2PMZ A;  2G5D A;  4CS0 A;  1EU1 A;  2AE0 X;  2YUJ A;  5GLF A;  1FDI A;  2V3V A;  2R93 A;  5DYG A;  5FTK A;  2JA5 A;  1H5N A;  1PYQ A;  1YNJ D;  2CW0 D;  2C45 A;  3TM7 B;  1YLE A;  3HU2 A;  4GA6 A;  1PT0 A;  5B6C A;  1CZ4 A;  2JIO A;  3GTP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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