1PPYA

Native precursor of pyruvoyl dependent aspartate decarboxylase
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
118
structure length
117
Chain Sequence
MIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
source organism Escherichia coli
molecule tags Lyase
molecule keywords Aspartate 1-decarboxylase precursor
total genus 33
structure length 117
sequence length 118
chains with identical sequence B
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-06-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1ppyA00
2E7ZA 1I3QA 4KDLA 3GTOA 1AA6A 3HKZA 1K83A 1R7RA 4QIWA 4AONB 3QWZA 1TWHA 3HU3A 4KO8A 2IV2X 5FTMA 2C45A 2E2HA 2WB1A 5T5ID 3CF2A 2B63A 3FKIA 1WCMA 4CS0A 2KI8A 1IW7D 2JA5A 5DYIA 1H0HA 5EPPA 2WAQA 2NVXA 2JIPA 1SFOA 4AYBA 1Y4ZA 5T5MD 5B6CA 2VUMA 1S3SA 2VPZA 2JA6A 4AAYA 5FTJA 1OGYA 3QC8A 1H5NA 1FDIA 1AW8B 1TWGA 2R7ZA 1Q16A 3H0GA 3QQ8A 4D7ZB 1CR5A 5C1BA 1DMSA 4KDIA 2E2IA 1EU1A 3GTLA 3ML1A 1TWAA 2VPWA 3DMRA 3O5AA 1PQHA 4C2MA 5FTLA 1E18A 2VPXA 4KLNA 1UHDA 1DMRA 1Y1VA 2EEOB 3QQ7A 4RV0A 2YU9A 3IR5A 1QDNA 2JIOA 1YLEA 5DYGA 1PT0A 1SIWA 1I50A 4CRZA 2PJHB 4GA6A 4AZDA 2NVYA 2JIRA 2V3VA 3CQZA 5FTNA 4DMRA 3GTGA 1CZ5A 1KQGA 2JIQA 3IR6A 3TM7B 1PQFA 1PT1A 1R27A 1PYUB 1TWFA 3GTKA 1WLFA 4CRYG 3IR7A 3GTPA 1QCSA 2JA7A 2R92A 2NYAA 1E61A 4AOKB 3HU1A 1PYQA 1Y5IA 1CZ4A 1G8JA 4GA5A 3OUGA 1G8KA 1E60A 3TIWA 1TMOA 2V45A 5GLFA 1PQEA 1Y1WA 3PLXB 1FDOA 1PPYA 1UHEA 2VPYA 1VC3B 2DMRA 1TWCA 2NAPA 4KODA 1R9TA 1KQFA 3GTQA 3GTJA 5FTKA 5C18A 1E32A 3GTMA 2Y0SA 2PMZA 2R93A 3HU2A 2JIMA 1E5VA
chains in the Genus database with same CATH superfamily
2E7ZA 1I3QA 4KDLA 3GTOA 1AA6A 3X2HA 4FERA 1K83A 1R7RA 4QIWA 3SUKA 2PI8A 4AONB 2PNWA 3QWZA 1TWHA 3HU3A 4KO8A 4JP6A 2IV2X 5FTMA 2C45A 1SMYD 2CW0D 2E2HA 2O5JD 2WB1A 5T5ID 3CF2A 3ENGA 2B63A 3FKIA 2A6ED 3X2GA 1WCMA 4CS0A 2KI8A 2PICA 1IW7D 2JA5A 2KQAA 2A69D 1H0HA 5DYIA 5EPPA 2WAQA 3X2PA 4NOHA 2JIPA 4AVRA 2NVXA 1SFOA 4AYBA 1Y4ZA 2G5DA 4FG2A 5T5MD 3X2OA 5B6CA 2VUMA 1S3SA 2VPZA 4JCWA 2JA6A 4AAYA 1L8FA 5FTJA 2PJJA 4JS7A 1OA9A 1OGYA 3QC8A 1H5NA 1FDIA 1AW8B 1TWGA 4FG4A 2R7ZA 3SULA 2HCZX 1Q16A 4JP7A 3SUJA 3H0GA 3QQ8A 4D7ZB 5GLYA 1CR5A 4L48A 2A68D 1BW4A 5C1BA 1DMSA 1OA7A 2AE0X 4KDIA 2E2IA 1EU1A 3SUMA 3GTLA 3ML1A 1TWAA 2VPWA 3DMRA 3O5AA 1N10A 1YNND 1PQHA 3X2LA 4C2MA 5FTLA 1E18A 2VPXA 4KLNA 1UHDA 1DMRA 1YNJD 1Y1VA 2EEOB 3QQ7A 4RV0A 1BW3A 4FFTA 2YU9A 3IR5A 1QDNA 2JIOA 1YLEA 3HU2A 2GAEA 5DYGA 1PT0A 1SIWA 1I50A 4CRZA 5H4UA 2PJHB 4GA6A 4AZDA 2NVYA 2JIRA 2V3VA 3CQZA 5FTNA 4DMRA 3GTGA 1CZ5A 1HD5A 4JJOA 1WC2A 3X2MA 1KQGA 2JIQA 3IR6A 3TM7B 1PQFA 1PT1A 1R27A 1PYUB 1TWFA 4ZM7A 3GTKA 3X2KA 1WLFA 4CRYG 3IR7A 2YUJA 3GTPA 1QCSA 2JA7A 2R92A 2NYAA 1E61A 3CZBA 3M3GA 3HU1A 4AOKB 1PYQA 1Y5IA 2G6GA 1CZ4A 1G8JA 4GA5A 3OUGA 1G8KA 1E60A 3TIWA 2BH0A 1TMOA 2V45A 5GLFA 1PQEA 1Y1WA 1ZC1A 4ENGA 5GLXA 3PLXB 1FDOA 1PPYA 1UHEA 2VPYA 1VC3B 2DMRA 1TWCA 2NAPA 4KODA 1R9TA 1KQFA 3GTQA 2ENGA 3X2NA 1ZYRD 3GTJA 5FTKA 2A6HD 1E32A 3D30A 5GM9A 3X2IA 2Y0SA 5C18A 2BE5D 2PMZA 3GTMA 2R93A 3HKZA 2JIMA 1E5VA 3X2JA
chains in the Genus database with same CATH topology
2E7ZA 1I3QA 4KDLA 3GTOA 1AA6A 1K83A 1R7RA 4QIWA 2PI8A 4AONB 2PNWA 3QWZA 1TWHA 3HU3A 4KO8A 2IV2X 5FTMA 2C45A 1SMYD 2CW0D 2E2HA 2O5JD 2WB1A 5T5ID 3CF2A 2B63A 3FKIA 2A6ED 1WCMA 4CS0A 2KI8A 2PICA 1IW7D 2JA5A 2A69D 1H0HA 5DYIA 5EPPA 2WAQA 4NOHA 2JIPA 2NVXA 1SFOA 4AYBA 1Y4ZA 2G5DA 5T5MD 5B6CA 2VUMA 1S3SA 2VPZA 2JA6A 4AAYA 5FTJA 2PJJA 1OGYA 3QC8A 1H5NA 1FDIA 1AW8B 1TWGA 2R7ZA 1Q16A 3H0GA 3QQ8A 4D7ZB 1CR5A 2A68D 5C1BA 1DMSA 2AE0X 4KDIA 2E2IA 1EU1A 3GTLA 3ML1A 1TWAA 2VPWA 3DMRA 3O5AA 1YNND 1PQHA 4C2MA 5FTLA 1E18A 2VPXA 4KLNA 1UHDA 1DMRA 1YNJD 1Y1VA 2EEOB 3QQ7A 4RV0A 2YU9A 3IR5A 1QDNA 2JIOA 1YLEA 3HU2A 2GAEA 5DYGA 1PT0A 1SIWA 1I50A 4CRZA 2PJHB 4GA6A 4AZDA 2NVYA 2JIRA 2V3VA 3CQZA 5FTNA 4DMRA 3GTGA 1CZ5A 1KQGA 2JIQA 3IR6A 3TM7B 1PQFA 1PT1A 1R27A 1PYUB 1TWFA 3GTKA 1WLFA 4CRYG 3IR7A 2YUJA 3GTPA 1QCSA 2JA7A 2R92A 2NYAA 1E61A 3CZBA 4AOKB 3HU1A 1PYQA 1Y5IA 2G6GA 1CZ4A 1G8JA 4GA5A 3OUGA 1G8KA 1E60A 3TIWA 1TMOA 2V45A 5GLFA 1PQEA 1Y1WA 1ZC1A 3PLXB 1FDOA 1PPYA 1UHEA 2VPYA 1VC3B 2DMRA 1TWCA 2NAPA 4KODA 1R9TA 1KQFA 3GTQA 1ZYRD 3GTJA 5FTKA 2A6HD 1E32A 5C18A 3GTMA 2Y0SA 2BE5D 2PMZA 2R93A 3HKZA 2JIMA 1E5VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E7Z A;  1I3Q A;  4KDL A;  3GTO A;  1AA6 A;  3HKZ A;  1K83 A;  1R7R A;  4QIW A;  4AON B;  3QWZ A;  1TWH A;  3HU3 A;  4KO8 A;  2IV2 X;  5FTM A;  2C45 A;  2E2H A;  2WB1 A;  5T5I D;  3CF2 A;  2B63 A;  3FKI A;  1WCM A;  4CS0 A;  2KI8 A;  1IW7 D;  2JA5 A;  5DYI A;  1H0H A;  5EPP A;  2WAQ A;  2NVX A;  2JIP A;  1SFO A;  4AYB A;  1Y4Z A;  5T5M D;  5B6C A;  2VUM A;  1S3S A;  2VPZ A;  2JA6 A;  4AAY A;  5FTJ A;  1OGY A;  3QC8 A;  1H5N A;  1FDI A;  1AW8 B;  1TWG A;  2R7Z A;  1Q16 A;  3H0G A;  3QQ8 A;  4D7Z B;  1CR5 A;  5C1B A;  1DMS A;  4KDI A;  2E2I A;  1EU1 A;  3GTL A;  3ML1 A;  1TWA A;  2VPW A;  3DMR A;  3O5A A;  1PQH A;  4C2M A;  5FTL A;  1E18 A;  2VPX A;  4KLN A;  1UHD A;  1DMR A;  1Y1V A;  2EEO B;  3QQ7 A;  4RV0 A;  2YU9 A;  3IR5 A;  1QDN A;  2JIO A;  1YLE A;  5DYG A;  1PT0 A;  1SIW A;  1I50 A;  4CRZ A;  2PJH B;  4GA6 A;  4AZD A;  2NVY A;  2JIR A;  2V3V A;  3CQZ A;  5FTN A;  4DMR A;  3GTG A;  1CZ5 A;  1KQG A;  2JIQ A;  3IR6 A;  3TM7 B;  1PQF A;  1PT1 A;  1R27 A;  1PYU B;  1TWF A;  3GTK A;  1WLF A;  4CRY G;  3IR7 A;  3GTP A;  1QCS A;  2JA7 A;  2R92 A;  2NYA A;  1E61 A;  4AOK B;  3HU1 A;  1PYQ A;  1Y5I A;  1CZ4 A;  1G8J A;  4GA5 A;  3OUG A;  1G8K A;  1E60 A;  3TIW A;  1TMO A;  2V45 A;  5GLF A;  1PQE A;  1Y1W A;  3PLX B;  1FDO A;  1PPY A;  1UHE A;  2VPY A;  1VC3 B;  2DMR A;  1TWC A;  2NAP A;  4KOD A;  1R9T A;  1KQF A;  3GTQ A;  3GTJ A;  5FTK A;  5C18 A;  1E32 A;  3GTM A;  2Y0S A;  2PMZ A;  2R93 A;  3HU2 A;  2JIM A;  1E5V A; 
#chains in the Genus database with same CATH topology
 2E7Z A;  1I3Q A;  4KDL A;  3GTO A;  1AA6 A;  3X2H A;  4FER A;  1K83 A;  1R7R A;  4QIW A;  3SUK A;  2PI8 A;  4AON B;  2PNW A;  3QWZ A;  1TWH A;  3HU3 A;  4KO8 A;  4JP6 A;  2IV2 X;  5FTM A;  2C45 A;  1SMY D;  2CW0 D;  2E2H A;  2O5J D;  2WB1 A;  5T5I D;  3CF2 A;  3ENG A;  2B63 A;  3FKI A;  2A6E D;  3X2G A;  1WCM A;  4CS0 A;  2KI8 A;  2PIC A;  1IW7 D;  2JA5 A;  2KQA A;  2A69 D;  1H0H A;  5DYI A;  5EPP A;  2WAQ A;  3X2P A;  4NOH A;  2JIP A;  4AVR A;  2NVX A;  1SFO A;  4AYB A;  1Y4Z A;  2G5D A;  4FG2 A;  5T5M D;  3X2O A;  5B6C A;  2VUM A;  1S3S A;  2VPZ A;  4JCW A;  2JA6 A;  4AAY A;  1L8F A;  5FTJ A;  2PJJ A;  4JS7 A;  1OA9 A;  1OGY A;  3QC8 A;  1H5N A;  1FDI A;  1AW8 B;  1TWG A;  4FG4 A;  2R7Z A;  3SUL A;  2HCZ X;  1Q16 A;  4JP7 A;  3SUJ A;  3H0G A;  3QQ8 A;  4D7Z B;  5GLY A;  1CR5 A;  4L48 A;  2A68 D;  1BW4 A;  5C1B A;  1DMS A;  1OA7 A;  2AE0 X;  4KDI A;  2E2I A;  1EU1 A;  3SUM A;  3GTL A;  3ML1 A;  1TWA A;  2VPW A;  3DMR A;  3O5A A;  1N10 A;  1YNN D;  1PQH A;  3X2L A;  4C2M A;  5FTL A;  1E18 A;  2VPX A;  4KLN A;  1UHD A;  1DMR A;  1YNJ D;  1Y1V A;  2EEO B;  3QQ7 A;  4RV0 A;  1BW3 A;  4FFT A;  2YU9 A;  3IR5 A;  1QDN A;  2JIO A;  1YLE A;  3HU2 A;  2GAE A;  5DYG A;  1PT0 A;  1SIW A;  1I50 A;  4CRZ A;  5H4U A;  2PJH B;  4GA6 A;  4AZD A;  2NVY A;  2JIR A;  2V3V A;  3CQZ A;  5FTN A;  4DMR A;  3GTG A;  1CZ5 A;  1HD5 A;  4JJO A;  1WC2 A;  3X2M A;  1KQG A;  2JIQ A;  3IR6 A;  3TM7 B;  1PQF A;  1PT1 A;  1R27 A;  1PYU B;  1TWF A;  4ZM7 A;  3GTK A;  3X2K A;  1WLF A;  4CRY G;  3IR7 A;  2YUJ A;  3GTP A;  1QCS A;  2JA7 A;  2R92 A;  2NYA A;  1E61 A;  3CZB A;  3M3G A;  3HU1 A;  4AOK B;  1PYQ A;  1Y5I A;  2G6G A;  1CZ4 A;  1G8J A;  4GA5 A;  3OUG A;  1G8K A;  1E60 A;  3TIW A;  2BH0 A;  1TMO A;  2V45 A;  5GLF A;  1PQE A;  1Y1W A;  1ZC1 A;  4ENG A;  5GLX A;  3PLX B;  1FDO A;  1PPY A;  1UHE A;  2VPY A;  1VC3 B;  2DMR A;  1TWC A;  2NAP A;  4KOD A;  1R9T A;  1KQF A;  3GTQ A;  2ENG A;  3X2N A;  1ZYR D;  3GTJ A;  5FTK A;  2A6H D;  1E32 A;  3D30 A;  5GM9 A;  3X2I A;  2Y0S A;  5C18 A;  2BE5 D;  2PMZ A;  3GTM A;  2R93 A;  3HKZ A;  2JIM A;  1E5V A;  3X2J A; 
#chains in the Genus database with same CATH homology
 2E7Z A;  1I3Q A;  4KDL A;  3GTO A;  1AA6 A;  1K83 A;  1R7R A;  4QIW A;  2PI8 A;  4AON B;  2PNW A;  3QWZ A;  1TWH A;  3HU3 A;  4KO8 A;  2IV2 X;  5FTM A;  2C45 A;  1SMY D;  2CW0 D;  2E2H A;  2O5J D;  2WB1 A;  5T5I D;  3CF2 A;  2B63 A;  3FKI A;  2A6E D;  1WCM A;  4CS0 A;  2KI8 A;  2PIC A;  1IW7 D;  2JA5 A;  2A69 D;  1H0H A;  5DYI A;  5EPP A;  2WAQ A;  4NOH A;  2JIP A;  2NVX A;  1SFO A;  4AYB A;  1Y4Z A;  2G5D A;  5T5M D;  5B6C A;  2VUM A;  1S3S A;  2VPZ A;  2JA6 A;  4AAY A;  5FTJ A;  2PJJ A;  1OGY A;  3QC8 A;  1H5N A;  1FDI A;  1AW8 B;  1TWG A;  2R7Z A;  1Q16 A;  3H0G A;  3QQ8 A;  4D7Z B;  1CR5 A;  2A68 D;  5C1B A;  1DMS A;  2AE0 X;  4KDI A;  2E2I A;  1EU1 A;  3GTL A;  3ML1 A;  1TWA A;  2VPW A;  3DMR A;  3O5A A;  1YNN D;  1PQH A;  4C2M A;  5FTL A;  1E18 A;  2VPX A;  4KLN A;  1UHD A;  1DMR A;  1YNJ D;  1Y1V A;  2EEO B;  3QQ7 A;  4RV0 A;  2YU9 A;  3IR5 A;  1QDN A;  2JIO A;  1YLE A;  3HU2 A;  2GAE A;  5DYG A;  1PT0 A;  1SIW A;  1I50 A;  4CRZ A;  2PJH B;  4GA6 A;  4AZD A;  2NVY A;  2JIR A;  2V3V A;  3CQZ A;  5FTN A;  4DMR A;  3GTG A;  1CZ5 A;  1KQG A;  2JIQ A;  3IR6 A;  3TM7 B;  1PQF A;  1PT1 A;  1R27 A;  1PYU B;  1TWF A;  3GTK A;  1WLF A;  4CRY G;  3IR7 A;  2YUJ A;  3GTP A;  1QCS A;  2JA7 A;  2R92 A;  2NYA A;  1E61 A;  3CZB A;  4AOK B;  3HU1 A;  1PYQ A;  1Y5I A;  2G6G A;  1CZ4 A;  1G8J A;  4GA5 A;  3OUG A;  1G8K A;  1E60 A;  3TIW A;  1TMO A;  2V45 A;  5GLF A;  1PQE A;  1Y1W A;  1ZC1 A;  3PLX B;  1FDO A;  1PPY A;  1UHE A;  2VPY A;  1VC3 B;  2DMR A;  1TWC A;  2NAP A;  4KOD A;  1R9T A;  1KQF A;  3GTQ A;  1ZYR D;  3GTJ A;  5FTK A;  2A6H D;  1E32 A;  5C18 A;  3GTM A;  2Y0S A;  2BE5 D;  2PMZ A;  2R93 A;  3HKZ A;  2JIM A;  1E5V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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