3OUGA

Crystal structure of cleaved l-aspartate-alpha-decarboxylase from francisella tularensis
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
108
structure length
107
Chain Sequence
MLISVLKSKISYATVTGKDLFYVSITIDSEIMKQANIIENEKVQVVNLNNGERLETYVIKGEPNSKTIALNGPAARRCEIGDQLFIISYTQVDPTRENIKPKLVDLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Aspartate 1-decarboxylase
publication title Crystal structure of cleaved L-aspartate-alpha-decarboxylase from Francisella tularensis
rcsb
source organism Francisella tularensis subsp. tularensis
total genus 27
structure length 107
sequence length 108
chains with identical sequence B, C, E, F, G, H, I
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2010-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 3ougA00
1PT0A 1H5NA 1PYUB 2DMRA 1G8KA 5C18A 3HU2A 2EEOB 3GTQA 3HU3A 1QCSA 5FTJA 2KI8A 3ML1A 2VUMA 3IR7A 3IR5A 2JIOA 5DYGA 5C1BA 1TWHA 4KODA 2NVXA 4CRZA 4GA6A 1DMSA 4AOKB 1EU1A 5B6CA 4AZDA 2JIPA 2E2HA 1PQFA 3DMRA 2V45A 3IR6A 4AAYA 5T5MD 1FDIA 3QQ8A 3GTLA 2NYAA 1H0HA 1TWAA 3QWZA 2PJHB 2PMZA 2E7ZA 4CS0A 3FKIA 2R92A 1IW7D 2JA7A 4KLNA 2IV2X 4D7ZB 2YU9A 2JA6A 1PYQA 4AYBA 1TWCA 1CZ5A 4AONB 1AW8B 1PQEA 4KDLA 4CRYG 2JIRA 3QC8A 4QIWA 3GTMA 5T5ID 2VPYA 1I50A 1E61A 3QQ7A 1AA6A 1S3SA 1Q16A 1R7RA 1VC3B 3OUGA 2NAPA 3H0GA 3O5AA 4KO8A 5FTMA 1QDNA 1TWFA 5FTLA 4GA5A 1DMRA 3GTPA 1G8JA 2VPZA 1Y4ZA 1PT1A 2JIMA 1PPYA 2WB1A 1E18A 4KDIA 2VPXA 3PLXB 1I3QA 2R7ZA 3GTOA 1KQFA 2E2IA 2JA5A 1E60A 2B63A 1E32A 1OGYA 1WLFA 3HKZA 1SIWA 3HU1A 5FTKA 1R9TA 1Y1VA 1R27A 1UHEA 5DYIA 2JIQA 2VPWA 1KQGA 1UHDA 1Y5IA 3GTKA 1PQHA 4RV0A 5EPPA 3CQZA 4DMRA 3GTJA 2NVYA 5GLFA 5FTNA 3TM7B 2R93A 1FDOA 1K83A 4C2MA 2C45A 2WAQA 2V3VA 1TWGA 3GTGA 1YLEA 1E5VA 3CF2A 1TMOA 1WCMA 1CZ4A 2Y0SA 1SFOA 1CR5A 1Y1WA 3TIWA
chains in the Genus database with same CATH superfamily
1PT0A 1H5NA 2GAEA 2KQAA 3X2HA 3X2PA 1BW4A 3X2IA 1PYUB 2DMRA 3X2JA 4JJOA 3X2MA 1G8KA 5C18A 3HU2A 2CW0D 3SUMA 2EEOB 3X2KA 3GTQA 3HU3A 1QCSA 2BH0A 5FTJA 2KI8A 3ML1A 2VUMA 3IR7A 3IR5A 2JIOA 5DYGA 5C1BA 1TWHA 4KODA 2NVXA 4CRZA 1HD5A 4GA6A 1DMSA 4AOKB 1EU1A 5B6CA 4AZDA 1SMYD 3X2OA 3SUJA 2YUJA 2JIPA 4JP6A 2E2HA 1PQFA 3DMRA 1YNJD 2V45A 3IR6A 4AAYA 5T5MD 1FDIA 3QQ8A 3GTLA 2NYAA 1H0HA 1TWAA 3QWZA 2PJHB 1N10A 1ZYRD 2PMZA 2PJJA 2E7ZA 4CS0A 3FKIA 2R92A 1IW7D 2JA7A 1WC2A 4KLNA 2IV2X 4D7ZB 2YU9A 2JA6A 1PYQA 1BW3A 2HCZX 1TWCA 4AYBA 1CZ5A 4AONB 1AW8B 4JS7A 1PQEA 5GLXA 2G5DA 3X2NA 4KDLA 2O5JD 4CRYG 2PI8A 2JIRA 3QC8A 4QIWA 3SUKA 2AE0X 3GTMA 5T5ID 1YNND 2VPYA 4FG4A 1E61A 1I50A 3QQ7A 1AA6A 4ZM7A 1S3SA 1Q16A 1R7RA 3X2LA 1VC3B 3OUGA 2NAPA 3H0GA 3O5AA 4KO8A 4L48A 5FTMA 1QDNA 2ENGA 1TWFA 5FTLA 4GA5A 1DMRA 3GTPA 1G8JA 2VPZA 2BE5D 1Y4ZA 4NOHA 2PICA 4FERA 1PT1A 2JIMA 1PPYA 2WB1A 1E18A 4KDIA 2G6GA 2VPXA 2A69D 3PLXB 5H4UA 1I3QA 2R7ZA 3GTOA 1KQFA 4JP7A 2E2IA 2JA5A 1E60A 2B63A 1E32A 1OGYA 1WLFA 3ENGA 1SIWA 3HKZA 3D30A 3HU1A 4FFTA 5FTKA 1Y1VA 1R9TA 1R27A 1UHEA 5DYIA 2JIQA 5GM9A 2A68D 2VPWA 1KQGA 1UHDA 1Y5IA 2PNWA 1PQHA 4RV0A 5EPPA 3CQZA 3GTKA 4DMRA 3GTJA 2NVYA 1L8FA 1OA9A 5GLFA 3X2GA 5FTNA 2A6HD 3TM7B 2R93A 1FDOA 1K83A 4C2MA 1OA7A 2C45A 2A6ED 2V3VA 2WAQA 1TWGA 3GTGA 1YLEA 1E5VA 3CF2A 3CZBA 4JCWA 1TMOA 1WCMA 1CZ4A 2Y0SA 1SFOA 1ZC1A 3M3GA 4FG2A 1CR5A 3SULA 1Y1WA 3TIWA 4AVRA 5GLYA 4ENGA
chains in the Genus database with same CATH topology
1PT0A 1H5NA 2GAEA 1PYUB 2DMRA 1G8KA 5C18A 3HU2A 2CW0D 2EEOB 3GTQA 3HU3A 1QCSA 5FTJA 2KI8A 3ML1A 2VUMA 3IR7A 3IR5A 2JIOA 5DYGA 5C1BA 1TWHA 4KODA 2NVXA 4CRZA 4GA6A 1DMSA 4AOKB 1EU1A 5B6CA 4AZDA 1SMYD 2YUJA 2JIPA 2E2HA 1PQFA 3DMRA 1YNJD 2V45A 3IR6A 4AAYA 5T5MD 1FDIA 3QQ8A 3GTLA 2NYAA 1H0HA 1TWAA 3QWZA 2PJHB 1ZYRD 2PMZA 2PJJA 2E7ZA 4CS0A 3FKIA 2R92A 1IW7D 2JA7A 4KLNA 2IV2X 4D7ZB 2YU9A 2JA6A 1PYQA 4AYBA 1TWCA 1CZ5A 4AONB 1AW8B 1PQEA 2G5DA 4KDLA 2O5JD 4CRYG 2PI8A 2JIRA 3QC8A 4QIWA 2AE0X 3GTMA 5T5ID 1YNND 2VPYA 1I50A 1E61A 3QQ7A 1AA6A 1S3SA 1Q16A 1R7RA 1VC3B 3OUGA 2NAPA 3H0GA 3O5AA 4KO8A 5FTMA 1QDNA 1TWFA 5FTLA 4GA5A 1DMRA 3GTPA 1G8JA 2VPZA 2BE5D 1Y4ZA 4NOHA 2PICA 1PT1A 2JIMA 1PPYA 2WB1A 1E18A 4KDIA 2G6GA 2VPXA 2A69D 3PLXB 1I3QA 2R7ZA 3GTOA 1KQFA 2E2IA 2JA5A 1E60A 2B63A 1E32A 1OGYA 1WLFA 3HKZA 1SIWA 3HU1A 5FTKA 1R9TA 1Y1VA 1R27A 1UHEA 5DYIA 2JIQA 2A68D 2VPWA 1KQGA 1UHDA 1Y5IA 2PNWA 1PQHA 4RV0A 5EPPA 3CQZA 3GTKA 4DMRA 3GTJA 2NVYA 5GLFA 5FTNA 2A6HD 3TM7B 2R93A 1FDOA 1K83A 4C2MA 2C45A 2WAQA 2A6ED 2V3VA 1TWGA 3GTGA 1YLEA 1E5VA 3CF2A 3CZBA 1TMOA 1WCMA 1CZ4A 2Y0SA 1SFOA 1ZC1A 1CR5A 1Y1WA 3TIWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PT0 A;  1H5N A;  1PYU B;  2DMR A;  1G8K A;  5C18 A;  3HU2 A;  2EEO B;  3GTQ A;  3HU3 A;  1QCS A;  5FTJ A;  2KI8 A;  3ML1 A;  2VUM A;  3IR7 A;  3IR5 A;  2JIO A;  5DYG A;  5C1B A;  1TWH A;  4KOD A;  2NVX A;  4CRZ A;  4GA6 A;  1DMS A;  4AOK B;  1EU1 A;  5B6C A;  4AZD A;  2JIP A;  2E2H A;  1PQF A;  3DMR A;  2V45 A;  3IR6 A;  4AAY A;  5T5M D;  1FDI A;  3QQ8 A;  3GTL A;  2NYA A;  1H0H A;  1TWA A;  3QWZ A;  2PJH B;  2PMZ A;  2E7Z A;  4CS0 A;  3FKI A;  2R92 A;  1IW7 D;  2JA7 A;  4KLN A;  2IV2 X;  4D7Z B;  2YU9 A;  2JA6 A;  1PYQ A;  4AYB A;  1TWC A;  1CZ5 A;  4AON B;  1AW8 B;  1PQE A;  4KDL A;  4CRY G;  2JIR A;  3QC8 A;  4QIW A;  3GTM A;  5T5I D;  2VPY A;  1I50 A;  1E61 A;  3QQ7 A;  1AA6 A;  1S3S A;  1Q16 A;  1R7R A;  1VC3 B;  3OUG A;  2NAP A;  3H0G A;  3O5A A;  4KO8 A;  5FTM A;  1QDN A;  1TWF A;  5FTL A;  4GA5 A;  1DMR A;  3GTP A;  1G8J A;  2VPZ A;  1Y4Z A;  1PT1 A;  2JIM A;  1PPY A;  2WB1 A;  1E18 A;  4KDI A;  2VPX A;  3PLX B;  1I3Q A;  2R7Z A;  3GTO A;  1KQF A;  2E2I A;  2JA5 A;  1E60 A;  2B63 A;  1E32 A;  1OGY A;  1WLF A;  3HKZ A;  1SIW A;  3HU1 A;  5FTK A;  1R9T A;  1Y1V A;  1R27 A;  1UHE A;  5DYI A;  2JIQ A;  2VPW A;  1KQG A;  1UHD A;  1Y5I A;  3GTK A;  1PQH A;  4RV0 A;  5EPP A;  3CQZ A;  4DMR A;  3GTJ A;  2NVY A;  5GLF A;  5FTN A;  3TM7 B;  2R93 A;  1FDO A;  1K83 A;  4C2M A;  2C45 A;  2WAQ A;  2V3V A;  1TWG A;  3GTG A;  1YLE A;  1E5V A;  3CF2 A;  1TMO A;  1WCM A;  1CZ4 A;  2Y0S A;  1SFO A;  1CR5 A;  1Y1W A;  3TIW A; 
#chains in the Genus database with same CATH topology
 1PT0 A;  1H5N A;  2GAE A;  2KQA A;  3X2H A;  3X2P A;  1BW4 A;  3X2I A;  1PYU B;  2DMR A;  3X2J A;  4JJO A;  3X2M A;  1G8K A;  5C18 A;  3HU2 A;  2CW0 D;  3SUM A;  2EEO B;  3X2K A;  3GTQ A;  3HU3 A;  1QCS A;  2BH0 A;  5FTJ A;  2KI8 A;  3ML1 A;  2VUM A;  3IR7 A;  3IR5 A;  2JIO A;  5DYG A;  5C1B A;  1TWH A;  4KOD A;  2NVX A;  4CRZ A;  1HD5 A;  4GA6 A;  1DMS A;  4AOK B;  1EU1 A;  5B6C A;  4AZD A;  1SMY D;  3X2O A;  3SUJ A;  2YUJ A;  2JIP A;  4JP6 A;  2E2H A;  1PQF A;  3DMR A;  1YNJ D;  2V45 A;  3IR6 A;  4AAY A;  5T5M D;  1FDI A;  3QQ8 A;  3GTL A;  2NYA A;  1H0H A;  1TWA A;  3QWZ A;  2PJH B;  1N10 A;  1ZYR D;  2PMZ A;  2PJJ A;  2E7Z A;  4CS0 A;  3FKI A;  2R92 A;  1IW7 D;  2JA7 A;  1WC2 A;  4KLN A;  2IV2 X;  4D7Z B;  2YU9 A;  2JA6 A;  1PYQ A;  1BW3 A;  2HCZ X;  1TWC A;  4AYB A;  1CZ5 A;  4AON B;  1AW8 B;  4JS7 A;  1PQE A;  5GLX A;  2G5D A;  3X2N A;  4KDL A;  2O5J D;  4CRY G;  2PI8 A;  2JIR A;  3QC8 A;  4QIW A;  3SUK A;  2AE0 X;  3GTM A;  5T5I D;  1YNN D;  2VPY A;  4FG4 A;  1E61 A;  1I50 A;  3QQ7 A;  1AA6 A;  4ZM7 A;  1S3S A;  1Q16 A;  1R7R A;  3X2L A;  1VC3 B;  3OUG A;  2NAP A;  3H0G A;  3O5A A;  4KO8 A;  4L48 A;  5FTM A;  1QDN A;  2ENG A;  1TWF A;  5FTL A;  4GA5 A;  1DMR A;  3GTP A;  1G8J A;  2VPZ A;  2BE5 D;  1Y4Z A;  4NOH A;  2PIC A;  4FER A;  1PT1 A;  2JIM A;  1PPY A;  2WB1 A;  1E18 A;  4KDI A;  2G6G A;  2VPX A;  2A69 D;  3PLX B;  5H4U A;  1I3Q A;  2R7Z A;  3GTO A;  1KQF A;  4JP7 A;  2E2I A;  2JA5 A;  1E60 A;  2B63 A;  1E32 A;  1OGY A;  1WLF A;  3ENG A;  1SIW A;  3HKZ A;  3D30 A;  3HU1 A;  4FFT A;  5FTK A;  1Y1V A;  1R9T A;  1R27 A;  1UHE A;  5DYI A;  2JIQ A;  5GM9 A;  2A68 D;  2VPW A;  1KQG A;  1UHD A;  1Y5I A;  2PNW A;  1PQH A;  4RV0 A;  5EPP A;  3CQZ A;  3GTK A;  4DMR A;  3GTJ A;  2NVY A;  1L8F A;  1OA9 A;  5GLF A;  3X2G A;  5FTN A;  2A6H D;  3TM7 B;  2R93 A;  1FDO A;  1K83 A;  4C2M A;  1OA7 A;  2C45 A;  2A6E D;  2V3V A;  2WAQ A;  1TWG A;  3GTG A;  1YLE A;  1E5V A;  3CF2 A;  3CZB A;  4JCW A;  1TMO A;  1WCM A;  1CZ4 A;  2Y0S A;  1SFO A;  1ZC1 A;  3M3G A;  4FG2 A;  1CR5 A;  3SUL A;  1Y1W A;  3TIW A;  4AVR A;  5GLY A;  4ENG A; 
#chains in the Genus database with same CATH homology
 1PT0 A;  1H5N A;  2GAE A;  1PYU B;  2DMR A;  1G8K A;  5C18 A;  3HU2 A;  2CW0 D;  2EEO B;  3GTQ A;  3HU3 A;  1QCS A;  5FTJ A;  2KI8 A;  3ML1 A;  2VUM A;  3IR7 A;  3IR5 A;  2JIO A;  5DYG A;  5C1B A;  1TWH A;  4KOD A;  2NVX A;  4CRZ A;  4GA6 A;  1DMS A;  4AOK B;  1EU1 A;  5B6C A;  4AZD A;  1SMY D;  2YUJ A;  2JIP A;  2E2H A;  1PQF A;  3DMR A;  1YNJ D;  2V45 A;  3IR6 A;  4AAY A;  5T5M D;  1FDI A;  3QQ8 A;  3GTL A;  2NYA A;  1H0H A;  1TWA A;  3QWZ A;  2PJH B;  1ZYR D;  2PMZ A;  2PJJ A;  2E7Z A;  4CS0 A;  3FKI A;  2R92 A;  1IW7 D;  2JA7 A;  4KLN A;  2IV2 X;  4D7Z B;  2YU9 A;  2JA6 A;  1PYQ A;  4AYB A;  1TWC A;  1CZ5 A;  4AON B;  1AW8 B;  1PQE A;  2G5D A;  4KDL A;  2O5J D;  4CRY G;  2PI8 A;  2JIR A;  3QC8 A;  4QIW A;  2AE0 X;  3GTM A;  5T5I D;  1YNN D;  2VPY A;  1I50 A;  1E61 A;  3QQ7 A;  1AA6 A;  1S3S A;  1Q16 A;  1R7R A;  1VC3 B;  3OUG A;  2NAP A;  3H0G A;  3O5A A;  4KO8 A;  5FTM A;  1QDN A;  1TWF A;  5FTL A;  4GA5 A;  1DMR A;  3GTP A;  1G8J A;  2VPZ A;  2BE5 D;  1Y4Z A;  4NOH A;  2PIC A;  1PT1 A;  2JIM A;  1PPY A;  2WB1 A;  1E18 A;  4KDI A;  2G6G A;  2VPX A;  2A69 D;  3PLX B;  1I3Q A;  2R7Z A;  3GTO A;  1KQF A;  2E2I A;  2JA5 A;  1E60 A;  2B63 A;  1E32 A;  1OGY A;  1WLF A;  3HKZ A;  1SIW A;  3HU1 A;  5FTK A;  1R9T A;  1Y1V A;  1R27 A;  1UHE A;  5DYI A;  2JIQ A;  2A68 D;  2VPW A;  1KQG A;  1UHD A;  1Y5I A;  2PNW A;  1PQH A;  4RV0 A;  5EPP A;  3CQZ A;  3GTK A;  4DMR A;  3GTJ A;  2NVY A;  5GLF A;  5FTN A;  2A6H D;  3TM7 B;  2R93 A;  1FDO A;  1K83 A;  4C2M A;  2C45 A;  2WAQ A;  2A6E D;  2V3V A;  1TWG A;  3GTG A;  1YLE A;  1E5V A;  3CF2 A;  3CZB A;  1TMO A;  1WCM A;  1CZ4 A;  2Y0S A;  1SFO A;  1ZC1 A;  1CR5 A;  1Y1W A;  3TIW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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