5T5ID

Tungsten-containing formylmethanofuran dehydrogenase from methanothermobacter wolfeii, orthorhombic form at 1.9 a
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
130
structure length
130
Chain Sequence
MRVILNTGRTIWQGQAIESGKDLKMYVDAAAIIQMNPEMMKQLGIAEGDNVKVISEYGDVVVKAVEAKEPLPEGMVYIPMGPWANRVIRPYTDSTATPSFKNIPVEIIPTDEEVLDMPTLMKVYGKVGQI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Tungsten formylmethanofuran dehydrogenase subunit fwdA
publication title The methanogenic CO2 reducing-and-fixing enzyme is bifunctional and contains 46 [4Fe-4S] clusters.
pubmed doi rcsb
total genus 32
structure length 130
sequence length 130
chains with identical sequence L
ec nomenclature
pdb deposition date 2016-08-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF01568 Molydop_binding Molydopterin dinucleotide binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 5t5iD00
5DYIA 2JIRA 4GA6A 2VPZA 5EPPA 4DMRA 3GTGA 3IR5A 2WAQA 3H0GA 4KDIA 2E2IA 1H5NA 3TM7B 2V45A 2VUMA 5FTMA 1G8JA 2VPYA 1R7RA 5C18A 1E18A 1R27A 4AZDA 5FTNA 2Y0SA 4KODA 3HU2A 3GTLA 5T5MD 3FKIA 3HU3A 4CS0A 1IW7D 2WB1A 2NYAA 3ML1A 2R7ZA 3QWZA 3IR7A 1PT1A 1TWAA 1CZ4A 1KQGA 5FTKA 4AYBA 3CQZA 2VPWA 1Y1VA 2PJHB 1I50A 2JIPA 4GA5A 1PYQA 1TWHA 3O5AA 4KO8A 1Y4ZA 1R9TA 1TMOA 3GTQA 2B63A 1UHEA 1TWFA 1E60A 3HKZA 2YU9A 1AW8B 5FTLA 3IR6A 1E61A 1CZ5A 2PMZA 1TWGA 1OGYA 1QDNA 4D7ZB 1FDOA 1S3SA 3TIWA 3GTKA 1DMSA 2E2HA 1WCMA 4AONB 3OUGA 3GTOA 3GTPA 3HU1A 1H0HA 5C1BA 5B6CA 1EU1A 4CRZA 3DMRA 2NAPA 4KLNA 2NVXA 3CF2A 1I3QA 3QC8A 4QIWA 1PPYA 5T5ID 1WLFA 1PQHA 1AA6A 2EEOB 2JA5A 5FTJA 1SFOA 2JIOA 4CRYG 1PQEA 1E32A 2E7ZA 1FDIA 2R92A 1DMRA 3QQ7A 2V3VA 1K83A 1PT0A 1QCSA 2JA7A 1YLEA 1SIWA 1TWCA 1Q16A 4RV0A 1UHDA 1PYUB 2JIQA 4C2MA 3GTJA 2IV2X 3PLXB 2DMRA 1G8KA 2JIMA 5GLFA 1VC3B 4KDLA 3QQ8A 4AAYA 1KQFA 2C45A 1CR5A 1E5VA 1Y5IA 4AOKB 2VPXA 2NVYA 3GTMA 2JA6A 1PQFA 2R93A 1Y1WA 5DYGA 2KI8A
chains in the Genus database with same CATH superfamily
5DYIA 2JIRA 4GA6A 3X2MA 2VPZA 2CW0D 5EPPA 4DMRA 3GTGA 2AE0X 3IR5A 2WAQA 3H0GA 4KDIA 2E2IA 1H5NA 3TM7B 2V45A 2VUMA 5FTMA 1G8JA 4L48A 2VPYA 3X2KA 1R7RA 2PJJA 5C18A 1E18A 1R27A 4AZDA 3X2PA 3M3GA 5FTNA 2Y0SA 4KODA 3HU2A 4JJOA 3GTLA 5T5MD 3FKIA 3HU3A 1OA7A 4NOHA 4CS0A 1IW7D 2WB1A 2NYAA 3ML1A 2R7ZA 3QWZA 3IR7A 1PT1A 1TWAA 1CZ4A 1KQGA 2YUJA 4FERA 5FTKA 1YNJD 4AYBA 3CQZA 1BW3A 2VPWA 2PNWA 1Y1VA 2PJHB 1I50A 2A69D 2JIPA 4GA5A 1PYQA 1TWHA 3O5AA 4KO8A 1Y4ZA 1R9TA 2PICA 1TMOA 3GTQA 2B63A 1UHEA 1TWFA 1HD5A 4ZM7A 3CZBA 1E60A 3HKZA 2YU9A 1AW8B 4JS7A 2G6GA 2BE5D 5FTLA 3IR6A 1E61A 5GLXA 2ENGA 1TWGA 2PMZA 1CZ5A 1OGYA 1QDNA 1WC2A 3ENGA 4D7ZB 5GM9A 1FDOA 1S3SA 3SUJA 3TIWA 3X2GA 1DMSA 3GTKA 2E2HA 1WCMA 4AONB 3OUGA 3SULA 3X2NA 3GTOA 3GTPA 3HU1A 1H0HA 5C1BA 1ZYRD 3X2JA 5B6CA 3SUMA 1EU1A 1YNND 4JP7A 4CRZA 2A6HD 3DMRA 2NAPA 4KLNA 4FG2A 2NVXA 1SMYD 3CF2A 2HCZX 1I3QA 3QC8A 4QIWA 1PPYA 5T5ID 5H4UA 1WLFA 1ZC1A 1PQHA 3SUKA 1AA6A 2EEOB 1BW4A 4JP6A 2JA5A 5FTJA 1SFOA 3X2LA 5GLYA 2JIOA 4CRYG 2G5DA 2A6ED 4ENGA 4JCWA 1PQEA 1E32A 3D30A 2E7ZA 1FDIA 2R92A 3X2IA 1DMRA 3QQ7A 2V3VA 1K83A 2GAEA 1L8FA 1PT0A 1QCSA 2PI8A 2O5JD 2JA7A 3X2HA 1YLEA 1SIWA 1TWCA 1Q16A 4FFTA 4RV0A 1UHDA 1PYUB 4AVRA 2BH0A 2JIQA 4C2MA 3GTJA 2IV2X 3PLXB 2DMRA 1G8KA 2JIMA 1N10A 5GLFA 1VC3B 4KDLA 4FG4A 3QQ8A 4AAYA 3X2OA 1KQFA 2C45A 1CR5A 1E5VA 1Y5IA 4AOKB 2VPXA 2NVYA 2KI8A 3GTMA 2JA6A 1PQFA 2R93A 1Y1WA 5DYGA 1OA9A 2A68D 2KQAA
chains in the Genus database with same CATH topology
5DYIA 2JIRA 4GA6A 2VPZA 2CW0D 5EPPA 4DMRA 3GTGA 2AE0X 3IR5A 2WAQA 3H0GA 4KDIA 2E2IA 1H5NA 3TM7B 2V45A 2VUMA 5FTMA 1G8JA 2VPYA 1R7RA 2PJJA 5C18A 1E18A 1R27A 4AZDA 5FTNA 2Y0SA 4KODA 3HU2A 3GTLA 5T5MD 3FKIA 3HU3A 4NOHA 4CS0A 1IW7D 2WB1A 2NYAA 3ML1A 2R7ZA 3QWZA 3IR7A 1PT1A 1TWAA 1CZ4A 1KQGA 2YUJA 5FTKA 1YNJD 4AYBA 3CQZA 2VPWA 2PNWA 1Y1VA 2PJHB 1I50A 2A69D 2JIPA 4GA5A 1PYQA 1TWHA 3O5AA 4KO8A 1Y4ZA 1R9TA 2PICA 1TMOA 3GTQA 2B63A 1UHEA 1TWFA 3CZBA 1E60A 3HKZA 2YU9A 1AW8B 2G6GA 2BE5D 5FTLA 3IR6A 1E61A 1CZ5A 2PMZA 1TWGA 1OGYA 1QDNA 4D7ZB 1FDOA 1S3SA 3TIWA 3GTKA 1DMSA 2E2HA 1WCMA 4AONB 3OUGA 3GTOA 3GTPA 3HU1A 1H0HA 5C1BA 1ZYRD 5B6CA 1EU1A 1YNND 4CRZA 2A6HD 2A68D 2NAPA 3DMRA 4KLNA 2NVXA 1SMYD 3CF2A 1I3QA 3QC8A 4QIWA 1PPYA 5T5ID 1WLFA 1ZC1A 1PQHA 1AA6A 2EEOB 2JA5A 5FTJA 1SFOA 2JIOA 4CRYG 2G5DA 2A6ED 1PQEA 1E32A 2E7ZA 1FDIA 2R92A 1DMRA 3QQ7A 2V3VA 1K83A 2GAEA 1PT0A 1QCSA 2PI8A 2O5JD 2JA7A 1YLEA 1SIWA 1TWCA 1Q16A 4RV0A 1UHDA 1PYUB 2JIQA 4C2MA 3GTJA 2IV2X 3PLXB 2DMRA 1G8KA 2JIMA 5GLFA 1VC3B 4KDLA 3QQ8A 4AAYA 1KQFA 2C45A 1CR5A 1E5VA 1Y5IA 4AOKB 2VPXA 2NVYA 3GTMA 2JA6A 1PQFA 2R93A 1Y1WA 5DYGA 2KI8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DYI A;  2JIR A;  4GA6 A;  2VPZ A;  5EPP A;  4DMR A;  3GTG A;  3IR5 A;  2WAQ A;  3H0G A;  4KDI A;  2E2I A;  1H5N A;  3TM7 B;  2V45 A;  2VUM A;  5FTM A;  1G8J A;  2VPY A;  1R7R A;  5C18 A;  1E18 A;  1R27 A;  4AZD A;  5FTN A;  2Y0S A;  4KOD A;  3HU2 A;  3GTL A;  5T5M D;  3FKI A;  3HU3 A;  4CS0 A;  1IW7 D;  2WB1 A;  2NYA A;  3ML1 A;  2R7Z A;  3QWZ A;  3IR7 A;  1PT1 A;  1TWA A;  1CZ4 A;  1KQG A;  5FTK A;  4AYB A;  3CQZ A;  2VPW A;  1Y1V A;  2PJH B;  1I50 A;  2JIP A;  4GA5 A;  1PYQ A;  1TWH A;  3O5A A;  4KO8 A;  1Y4Z A;  1R9T A;  1TMO A;  3GTQ A;  2B63 A;  1UHE A;  1TWF A;  1E60 A;  3HKZ A;  2YU9 A;  1AW8 B;  5FTL A;  3IR6 A;  1E61 A;  1CZ5 A;  2PMZ A;  1TWG A;  1OGY A;  1QDN A;  4D7Z B;  1FDO A;  1S3S A;  3TIW A;  3GTK A;  1DMS A;  2E2H A;  1WCM A;  4AON B;  3OUG A;  3GTO A;  3GTP A;  3HU1 A;  1H0H A;  5C1B A;  5B6C A;  1EU1 A;  4CRZ A;  3DMR A;  2NAP A;  4KLN A;  2NVX A;  3CF2 A;  1I3Q A;  3QC8 A;  4QIW A;  1PPY A;  5T5I D;  1WLF A;  1PQH A;  1AA6 A;  2EEO B;  2JA5 A;  5FTJ A;  1SFO A;  2JIO A;  4CRY G;  1PQE A;  1E32 A;  2E7Z A;  1FDI A;  2R92 A;  1DMR A;  3QQ7 A;  2V3V A;  1K83 A;  1PT0 A;  1QCS A;  2JA7 A;  1YLE A;  1SIW A;  1TWC A;  1Q16 A;  4RV0 A;  1UHD A;  1PYU B;  2JIQ A;  4C2M A;  3GTJ A;  2IV2 X;  3PLX B;  2DMR A;  1G8K A;  2JIM A;  5GLF A;  1VC3 B;  4KDL A;  3QQ8 A;  4AAY A;  1KQF A;  2C45 A;  1CR5 A;  1E5V A;  1Y5I A;  4AOK B;  2VPX A;  2NVY A;  3GTM A;  2JA6 A;  1PQF A;  2R93 A;  1Y1W A;  5DYG A;  2KI8 A; 
#chains in the Genus database with same CATH topology
 5DYI A;  2JIR A;  4GA6 A;  3X2M A;  2VPZ A;  2CW0 D;  5EPP A;  4DMR A;  3GTG A;  2AE0 X;  3IR5 A;  2WAQ A;  3H0G A;  4KDI A;  2E2I A;  1H5N A;  3TM7 B;  2V45 A;  2VUM A;  5FTM A;  1G8J A;  4L48 A;  2VPY A;  3X2K A;  1R7R A;  2PJJ A;  5C18 A;  1E18 A;  1R27 A;  4AZD A;  3X2P A;  3M3G A;  5FTN A;  2Y0S A;  4KOD A;  3HU2 A;  4JJO A;  3GTL A;  5T5M D;  3FKI A;  3HU3 A;  1OA7 A;  4NOH A;  4CS0 A;  1IW7 D;  2WB1 A;  2NYA A;  3ML1 A;  2R7Z A;  3QWZ A;  3IR7 A;  1PT1 A;  1TWA A;  1CZ4 A;  1KQG A;  2YUJ A;  4FER A;  5FTK A;  1YNJ D;  4AYB A;  3CQZ A;  1BW3 A;  2VPW A;  2PNW A;  1Y1V A;  2PJH B;  1I50 A;  2A69 D;  2JIP A;  4GA5 A;  1PYQ A;  1TWH A;  3O5A A;  4KO8 A;  1Y4Z A;  1R9T A;  2PIC A;  1TMO A;  3GTQ A;  2B63 A;  1UHE A;  1TWF A;  1HD5 A;  4ZM7 A;  3CZB A;  1E60 A;  3HKZ A;  2YU9 A;  1AW8 B;  4JS7 A;  2G6G A;  2BE5 D;  5FTL A;  3IR6 A;  1E61 A;  5GLX A;  2ENG A;  1TWG A;  2PMZ A;  1CZ5 A;  1OGY A;  1QDN A;  1WC2 A;  3ENG A;  4D7Z B;  5GM9 A;  1FDO A;  1S3S A;  3SUJ A;  3TIW A;  3X2G A;  1DMS A;  3GTK A;  2E2H A;  1WCM A;  4AON B;  3OUG A;  3SUL A;  3X2N A;  3GTO A;  3GTP A;  3HU1 A;  1H0H A;  5C1B A;  1ZYR D;  3X2J A;  5B6C A;  3SUM A;  1EU1 A;  1YNN D;  4JP7 A;  4CRZ A;  2A6H D;  3DMR A;  2NAP A;  4KLN A;  4FG2 A;  2NVX A;  1SMY D;  3CF2 A;  2HCZ X;  1I3Q A;  3QC8 A;  4QIW A;  1PPY A;  5T5I D;  5H4U A;  1WLF A;  1ZC1 A;  1PQH A;  3SUK A;  1AA6 A;  2EEO B;  1BW4 A;  4JP6 A;  2JA5 A;  5FTJ A;  1SFO A;  3X2L A;  5GLY A;  2JIO A;  4CRY G;  2G5D A;  2A6E D;  4ENG A;  4JCW A;  1PQE A;  1E32 A;  3D30 A;  2E7Z A;  1FDI A;  2R92 A;  3X2I A;  1DMR A;  3QQ7 A;  2V3V A;  1K83 A;  2GAE A;  1L8F A;  1PT0 A;  1QCS A;  2PI8 A;  2O5J D;  2JA7 A;  3X2H A;  1YLE A;  1SIW A;  1TWC A;  1Q16 A;  4FFT A;  4RV0 A;  1UHD A;  1PYU B;  4AVR A;  2BH0 A;  2JIQ A;  4C2M A;  3GTJ A;  2IV2 X;  3PLX B;  2DMR A;  1G8K A;  2JIM A;  1N10 A;  5GLF A;  1VC3 B;  4KDL A;  4FG4 A;  3QQ8 A;  4AAY A;  3X2O A;  1KQF A;  2C45 A;  1CR5 A;  1E5V A;  1Y5I A;  4AOK B;  2VPX A;  2NVY A;  2KI8 A;  3GTM A;  2JA6 A;  1PQF A;  2R93 A;  1Y1W A;  5DYG A;  1OA9 A;  2A68 D;  2KQA A; 
#chains in the Genus database with same CATH homology
 5DYI A;  2JIR A;  4GA6 A;  2VPZ A;  2CW0 D;  5EPP A;  4DMR A;  3GTG A;  2AE0 X;  3IR5 A;  2WAQ A;  3H0G A;  4KDI A;  2E2I A;  1H5N A;  3TM7 B;  2V45 A;  2VUM A;  5FTM A;  1G8J A;  2VPY A;  1R7R A;  2PJJ A;  5C18 A;  1E18 A;  1R27 A;  4AZD A;  5FTN A;  2Y0S A;  4KOD A;  3HU2 A;  3GTL A;  5T5M D;  3FKI A;  3HU3 A;  4NOH A;  4CS0 A;  1IW7 D;  2WB1 A;  2NYA A;  3ML1 A;  2R7Z A;  3QWZ A;  3IR7 A;  1PT1 A;  1TWA A;  1CZ4 A;  1KQG A;  2YUJ A;  5FTK A;  1YNJ D;  4AYB A;  3CQZ A;  2VPW A;  2PNW A;  1Y1V A;  2PJH B;  1I50 A;  2A69 D;  2JIP A;  4GA5 A;  1PYQ A;  1TWH A;  3O5A A;  4KO8 A;  1Y4Z A;  1R9T A;  2PIC A;  1TMO A;  3GTQ A;  2B63 A;  1UHE A;  1TWF A;  3CZB A;  1E60 A;  3HKZ A;  2YU9 A;  1AW8 B;  2G6G A;  2BE5 D;  5FTL A;  3IR6 A;  1E61 A;  1CZ5 A;  2PMZ A;  1TWG A;  1OGY A;  1QDN A;  4D7Z B;  1FDO A;  1S3S A;  3TIW A;  3GTK A;  1DMS A;  2E2H A;  1WCM A;  4AON B;  3OUG A;  3GTO A;  3GTP A;  3HU1 A;  1H0H A;  5C1B A;  1ZYR D;  5B6C A;  1EU1 A;  1YNN D;  4CRZ A;  2A6H D;  2A68 D;  2NAP A;  3DMR A;  4KLN A;  2NVX A;  1SMY D;  3CF2 A;  1I3Q A;  3QC8 A;  4QIW A;  1PPY A;  5T5I D;  1WLF A;  1ZC1 A;  1PQH A;  1AA6 A;  2EEO B;  2JA5 A;  5FTJ A;  1SFO A;  2JIO A;  4CRY G;  2G5D A;  2A6E D;  1PQE A;  1E32 A;  2E7Z A;  1FDI A;  2R92 A;  1DMR A;  3QQ7 A;  2V3V A;  1K83 A;  2GAE A;  1PT0 A;  1QCS A;  2PI8 A;  2O5J D;  2JA7 A;  1YLE A;  1SIW A;  1TWC A;  1Q16 A;  4RV0 A;  1UHD A;  1PYU B;  2JIQ A;  4C2M A;  3GTJ A;  2IV2 X;  3PLX B;  2DMR A;  1G8K A;  2JIM A;  5GLF A;  1VC3 B;  4KDL A;  3QQ8 A;  4AAY A;  1KQF A;  2C45 A;  1CR5 A;  1E5V A;  1Y5I A;  4AOK B;  2VPX A;  2NVY A;  3GTM A;  2JA6 A;  1PQF A;  2R93 A;  1Y1W A;  5DYG A;  2KI8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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