3M3GA

Crystal structure of sm1, an elicitor of plant defence responses from trichoderma virens.
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
120
structure length
120
Chain Sequence
DTVSYDTGYDNGSRSLNDVSCSDGPNGLETRYHWSTQGQIPRFPYIGGAAAVAGWNSASCGTCWKLQYSGHTIYVLAVDHAASGFNIALDAMNALTGGQAVQLGRVSATATQVPVKNCGL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Polysaccharide-binding protein
molecule keywords Epl1 protein
publication title Crystal structure of Sm1, an elicitor of plant defence responses from Trichoderma virens.
rcsb
total genus 38
structure length 120
sequence length 120
ec nomenclature
pdb deposition date 2010-03-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07249 Cerato-platanin Cerato-platanin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 3m3gA00
3X2GA 1N10A 3SUKA 4FG2A 3X2MA 4JS7A 3SULA 1WC2A 3X2NA 4FERA 4L48A 1OA9A 4ZM7A 4AVRA 2HCZX 2BH0A 2KQAA 4ENGA 4FFTA 3X2PA 5GLXA 2PICA 1L8FA 3X2OA 5GM9A 3SUMA 1BW4A 2GAEA 3M3GA 5GLYA 2G6GA 3CZBA 3X2LA 4JCWA 3X2HA 2PNWA 4JP6A 5H4UA 2G5DA 3X2IA 3X2JA 2PJJA 2PI8A 1HD5A 3ENGA 3SUJA 3X2KA 2ENGA 4FG4A 4JJOA 4JP7A 1OA7A 2AE0X 1BW3A 3D30A
chains in the Genus database with same CATH superfamily
3SUKA 2NVYA 3TM7B 4QIWA 5B6CA 4KDLA 4AAYA 3HU3A 1AA6A 4JS7A 3SULA 4AONB 1I50A 3H0GA 1PQEA 2JIPA 5GLFA 1OA9A 1E18A 1TWGA 3CF2A 3FKIA 4GA6A 4KDIA 4CRYG 5FTLA 2V45A 1E61A 4FFTA 2JA6A 5GLXA 1L8FA 2A6HD 1TWHA 2WB1A 4RV0A 1BW4A 2JIOA 5GLYA 2YU9A 2R7ZA 3GTLA 2YUJA 3GTQA 5T5ID 2WAQA 3SUJA 3X2KA 1Y1WA 1E32A 4JJOA 1KQGA 4GA5A 1ZYRD 3IR6A 4AYBA 1OA7A 4KO8A 3GTKA 1DMSA 2NAPA 2PMZA 1TWFA 1Y4ZA 2BE5D 5FTJA 2PJHB 1FDIA 1G8JA 1QDNA 3GTOA 4AVRA 1WCMA 1SIWA 2HCZX 4DMRA 2Y0SA 5FTMA 5C1BA 3GTJA 1PQHA 1KQFA 5GM9A 1S3SA 1YNND 3M3GA 2G6GA 3X2LA 3PLXB 2PNWA 4JP6A 1WLFA 1YLEA 2G5DA 2JIMA 2PJJA 1SFOA 3DMRA 1HD5A 3TIWA 4NOHA 2CW0D 2VPXA 3QQ8A 4FG4A 2DMRA 3O5AA 2NYAA 5EPPA 1E5VA 1N10A 3GTGA 1IW7D 1ZC1A 1PPYA 1PT1A 4FG2A 5DYIA 4D7ZB 2A69D 3HKZA 3X2MA 4CS0A 1PT0A 1Y1VA 1Y5IA 3CQZA 3GTMA 2R93A 1PYQA 1UHEA 2VPYA 2BH0A 1DMRA 3HU2A 4KODA 1Q16A 1QCSA 3HU1A 2PICA 3X2PA 4AZDA 3GTPA 3IR5A 2GAEA 5FTNA 3QC8A 1H0HA 3CZBA 2VPZA 4JCWA 3X2JA 1CZ5A 3QWZA 3X2IA 3IR7A 1TWAA 1CZ4A 2C45A 2PI8A 3QQ7A 2NVXA 1I3QA 1PQFA 1R27A 5DYGA 2KI8A 2E2HA 4JP7A 1K83A 2AE0X 2O5JD 1BW3A 3OUGA 4AOKB 3ML1A 1E60A 3X2GA 1YNJD 5C18A 1FDOA 1WC2A 4C2MA 3X2NA 1OGYA 4FERA 4L48A 5FTKA 4ZM7A 2EEOB 2KQAA 2E7ZA 4ENGA 2IV2X 5T5MD 2B63A 3X2OA 1VC3B 2A68D 2A6ED 1SMYD 3SUMA 1EU1A 2R92A 1G8KA 1AW8B 3X2HA 1R9TA 2E2IA 5H4UA 2VUMA 2JIQA 1CR5A 1H5NA 3ENGA 1TWCA 2JA7A 1TMOA 2ENGA 2JA5A 4KLNA 2V3VA 4CRZA 3D30A 1PYUB 1UHDA 2VPWA 2JIRA 1R7RA
chains in the Genus database with same CATH topology
3X2GA 1N10A 3SUKA 4FG2A 3X2MA 4JS7A 3SULA 1WC2A 3X2NA 4FERA 4L48A 1OA9A 4ZM7A 4AVRA 2HCZX 2BH0A 2KQAA 4ENGA 4FFTA 3X2PA 5GLXA 2PICA 1L8FA 3X2OA 5GM9A 3SUMA 1BW4A 2GAEA 3M3GA 5GLYA 2G6GA 3CZBA 3X2LA 4JCWA 3X2HA 2PNWA 4JP6A 5H4UA 2G5DA 3X2IA 3X2JA 2PJJA 2PI8A 1HD5A 3ENGA 3SUJA 3X2KA 2ENGA 4FG4A 4JJOA 4JP7A 1OA7A 2AE0X 1BW3A 3D30A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3X2G A;  1N10 A;  3SUK A;  4FG2 A;  3X2M A;  4JS7 A;  3SUL A;  1WC2 A;  3X2N A;  4FER A;  4L48 A;  1OA9 A;  4ZM7 A;  4AVR A;  2HCZ X;  2BH0 A;  2KQA A;  4ENG A;  4FFT A;  3X2P A;  5GLX A;  2PIC A;  1L8F A;  3X2O A;  5GM9 A;  3SUM A;  1BW4 A;  2GAE A;  3M3G A;  5GLY A;  2G6G A;  3CZB A;  3X2L A;  4JCW A;  3X2H A;  2PNW A;  4JP6 A;  5H4U A;  2G5D A;  3X2I A;  3X2J A;  2PJJ A;  2PI8 A;  1HD5 A;  3ENG A;  3SUJ A;  3X2K A;  2ENG A;  4FG4 A;  4JJO A;  4JP7 A;  1OA7 A;  2AE0 X;  1BW3 A;  3D30 A; 
#chains in the Genus database with same CATH topology
 3SUK A;  2NVY A;  3TM7 B;  4QIW A;  5B6C A;  4KDL A;  4AAY A;  3HU3 A;  1AA6 A;  4JS7 A;  3SUL A;  4AON B;  1I50 A;  3H0G A;  1PQE A;  2JIP A;  5GLF A;  1OA9 A;  1E18 A;  1TWG A;  3CF2 A;  3FKI A;  4GA6 A;  4KDI A;  4CRY G;  5FTL A;  2V45 A;  1E61 A;  4FFT A;  2JA6 A;  5GLX A;  1L8F A;  2A6H D;  1TWH A;  2WB1 A;  4RV0 A;  1BW4 A;  2JIO A;  5GLY A;  2YU9 A;  2R7Z A;  3GTL A;  2YUJ A;  3GTQ A;  5T5I D;  2WAQ A;  3SUJ A;  3X2K A;  1Y1W A;  1E32 A;  4JJO A;  1KQG A;  4GA5 A;  1ZYR D;  3IR6 A;  4AYB A;  1OA7 A;  4KO8 A;  3GTK A;  1DMS A;  2NAP A;  2PMZ A;  1TWF A;  1Y4Z A;  2BE5 D;  5FTJ A;  2PJH B;  1FDI A;  1G8J A;  1QDN A;  3GTO A;  4AVR A;  1WCM A;  1SIW A;  2HCZ X;  4DMR A;  2Y0S A;  5FTM A;  5C1B A;  3GTJ A;  1PQH A;  1KQF A;  5GM9 A;  1S3S A;  1YNN D;  3M3G A;  2G6G A;  3X2L A;  3PLX B;  2PNW A;  4JP6 A;  1WLF A;  1YLE A;  2G5D A;  2JIM A;  2PJJ A;  1SFO A;  3DMR A;  1HD5 A;  3TIW A;  4NOH A;  2CW0 D;  2VPX A;  3QQ8 A;  4FG4 A;  2DMR A;  3O5A A;  2NYA A;  5EPP A;  1E5V A;  1N10 A;  3GTG A;  1IW7 D;  1ZC1 A;  1PPY A;  1PT1 A;  4FG2 A;  5DYI A;  4D7Z B;  2A69 D;  3HKZ A;  3X2M A;  4CS0 A;  1PT0 A;  1Y1V A;  1Y5I A;  3CQZ A;  3GTM A;  2R93 A;  1PYQ A;  1UHE A;  2VPY A;  2BH0 A;  1DMR A;  3HU2 A;  4KOD A;  1Q16 A;  1QCS A;  3HU1 A;  2PIC A;  3X2P A;  4AZD A;  3GTP A;  3IR5 A;  2GAE A;  5FTN A;  3QC8 A;  1H0H A;  3CZB A;  2VPZ A;  4JCW A;  3X2J A;  1CZ5 A;  3QWZ A;  3X2I A;  3IR7 A;  1TWA A;  1CZ4 A;  2C45 A;  2PI8 A;  3QQ7 A;  2NVX A;  1I3Q A;  1PQF A;  1R27 A;  5DYG A;  2KI8 A;  2E2H A;  4JP7 A;  1K83 A;  2AE0 X;  2O5J D;  1BW3 A;  3OUG A;  4AOK B;  3ML1 A;  1E60 A;  3X2G A;  1YNJ D;  5C18 A;  1FDO A;  1WC2 A;  4C2M A;  3X2N A;  1OGY A;  4FER A;  4L48 A;  5FTK A;  4ZM7 A;  2EEO B;  2KQA A;  2E7Z A;  4ENG A;  2IV2 X;  5T5M D;  2B63 A;  3X2O A;  1VC3 B;  2A68 D;  2A6E D;  1SMY D;  3SUM A;  1EU1 A;  2R92 A;  1G8K A;  1AW8 B;  3X2H A;  1R9T A;  2E2I A;  5H4U A;  2VUM A;  2JIQ A;  1CR5 A;  1H5N A;  3ENG A;  1TWC A;  2JA7 A;  1TMO A;  2ENG A;  2JA5 A;  4KLN A;  2V3V A;  4CRZ A;  3D30 A;  1PYU B;  1UHD A;  2VPW A;  2JIR A;  1R7R A; 
#chains in the Genus database with same CATH homology
 3X2G A;  1N10 A;  3SUK A;  4FG2 A;  3X2M A;  4JS7 A;  3SUL A;  1WC2 A;  3X2N A;  4FER A;  4L48 A;  1OA9 A;  4ZM7 A;  4AVR A;  2HCZ X;  2BH0 A;  2KQA A;  4ENG A;  4FFT A;  3X2P A;  5GLX A;  2PIC A;  1L8F A;  3X2O A;  5GM9 A;  3SUM A;  1BW4 A;  2GAE A;  3M3G A;  5GLY A;  2G6G A;  3CZB A;  3X2L A;  4JCW A;  3X2H A;  2PNW A;  4JP6 A;  5H4U A;  2G5D A;  3X2I A;  3X2J A;  2PJJ A;  2PI8 A;  1HD5 A;  3ENG A;  3SUJ A;  3X2K A;  2ENG A;  4FG4 A;  4JJO A;  4JP7 A;  1OA7 A;  2AE0 X;  1BW3 A;  3D30 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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