1PYUB

Processed aspartate decarboxylase mutant with ser25 mutated to cys
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
92
structure length
92
Chain Sequence
CCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Aspartate 1-decarboxylase beta chain
publication title Structural Constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
source organism Escherichia coli
total genus 23
structure length 92
sequence length 92
chains with identical sequence D
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-07-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1pyuB00
3CF2A 2NVYA 1Y1WA 2V45A 1E60A 3GTOA 2R92A 5FTNA 1TWFA 5DYIA 1I3QA 2EEOB 4KO8A 2JA5A 3OUGA 2VPZA 1QDNA 1R27A 2R93A 2JIRA 5FTJA 1UHEA 1PPYA 3PLXB 1KQGA 3DMRA 5C1BA 4KODA 3QQ8A 1TMOA 4D7ZB 1K83A 1SFOA 3IR5A 1PQEA 3TIWA 1Y1VA 1PYQA 1AA6A 3TM7B 3GTMA 1IW7D 4GA5A 4AONB 2KI8A 4CS0A 3GTQA 1WCMA 1FDOA 1PT1A 1I50A 2JIMA 4AYBA 1FDIA 5DYGA 2E2IA 4GA6A 1CR5A 4KLNA 1QCSA 1TWGA 3IR6A 3H0GA 2C45A 3GTGA 3ML1A 2E2HA 1H0HA 1E32A 1CZ4A 2WAQA 3HU3A 3GTPA 1OGYA 1E61A 3QWZA 3HU2A 4CRZA 1R9TA 1YLEA 1PQFA 2JIQA 2NYAA 2PJHB 4KDIA 1G8JA 1UHDA 4RV0A 3CQZA 2JA7A 3O5AA 4QIWA 1PYUB 3QQ7A 3HKZA 4CRYG 4DMRA 4AOKB 3GTKA 5B6CA 1PT0A 2JIPA 2IV2X 4AAYA 2NAPA 1PQHA 3IR7A 1VC3B 2VPWA 1DMSA 2DMRA 1Q16A 1S3SA 1E5VA 2JIOA 3GTLA 5GLFA 1AW8B 1WLFA 1E18A 3QC8A 3GTJA 1SIWA 1H5NA 5FTMA 4C2MA 2NVXA 1Y5IA 4KDLA 2YU9A 2B63A 1R7RA 2Y0SA 1TWCA 1EU1A 1G8KA 1KQFA 1DMRA 3HU1A 2WB1A 3FKIA 5FTKA 1Y4ZA 5FTLA 5EPPA 5T5ID 1CZ5A 5T5MD 1TWAA 2VUMA 2E7ZA 5C18A 4AZDA 2PMZA 2JA6A 1TWHA 2V3VA 2VPXA 2VPYA 2R7ZA
chains in the Genus database with same CATH superfamily
3CF2A 2NVYA 1Y1WA 2V45A 4FFTA 1E60A 4JCWA 3GTOA 2R92A 5FTNA 1TWFA 5DYIA 1HD5A 2EEOB 4KO8A 3X2LA 3OUGA 1I3QA 2JA5A 1SMYD 2VPZA 1L8FA 1QDNA 1R27A 4FG4A 2R93A 1YNJD 2JIRA 3X2HA 5FTJA 1UHEA 1PPYA 3PLXB 1KQGA 3DMRA 1YNND 5C1BA 4KODA 3QQ8A 1TMOA 4D7ZB 1K83A 1SFOA 3IR5A 4AVRA 3X2GA 1PQEA 2A68D 3TIWA 1Y1VA 1PYQA 3D30A 1AA6A 2BE5D 4JP7A 3TM7B 3GTMA 1IW7D 4GA5A 4AONB 1OA7A 2KI8A 4CS0A 3GTQA 1WCMA 1FDOA 4JP6A 1PT1A 3ENGA 1I50A 2JIMA 5GLXA 4AYBA 1FDIA 2PI8A 5DYGA 2E2IA 3CZBA 3X2NA 2PICA 4GA6A 1CR5A 4KLNA 1QCSA 1TWGA 4FG2A 2YUJA 3IR6A 3H0GA 2C45A 3GTGA 3ML1A 2E2HA 1H0HA 1E32A 1CZ4A 2WAQA 4ENGA 3HU3A 2CW0D 5GLYA 2G5DA 3GTPA 1OGYA 2HCZX 1E61A 1BW3A 4JJOA 1ZC1A 2PNWA 3QWZA 2GAEA 3HU2A 4CRZA 1R9TA 1YLEA 1PQFA 2JIQA 2NYAA 2PJHB 4KDIA 1G8JA 1UHDA 2A6HD 4RV0A 3CQZA 3SUKA 2JA7A 3O5AA 4QIWA 1PYUB 1OA9A 3QQ7A 3HKZA 4CRYG 3X2IA 4DMRA 4L48A 4AOKB 5B6CA 1PT0A 2PJJA 2JIPA 2IV2X 4AAYA 3GTKA 2NAPA 2KQAA 3X2PA 1PQHA 3IR7A 1WC2A 1VC3B 2VPWA 2O5JD 5GM9A 1DMSA 2AE0X 2DMRA 1Q16A 1S3SA 1E5VA 2JIOA 3SULA 3GTLA 5GLFA 1AW8B 1WLFA 3X2KA 4ZM7A 1E18A 3QC8A 3SUJA 3GTJA 4NOHA 4FERA 1SIWA 2BH0A 1H5NA 5FTMA 4C2MA 2NVXA 1Y5IA 4KDLA 2YU9A 2B63A 1R7RA 2Y0SA 3SUMA 1TWCA 1EU1A 3X2MA 1G8KA 5H4UA 1KQFA 2G6GA 1DMRA 3HU1A 3M3GA 2A6ED 2WB1A 3FKIA 5FTKA 3X2OA 1Y4ZA 1N10A 5FTLA 5EPPA 5T5ID 1CZ5A 5T5MD 1TWAA 2A69D 2E7ZA 5C18A 2VUMA 4AZDA 1ZYRD 2PMZA 4JS7A 1BW4A 3X2JA 2JA6A 1TWHA 2V3VA 2VPXA 2ENGA 2VPYA 2R7ZA
chains in the Genus database with same CATH topology
3CF2A 2NVYA 1Y1WA 2V45A 1E60A 3GTOA 2R92A 5FTNA 1TWFA 5DYIA 1I3QA 2EEOB 4KO8A 2JA5A 3OUGA 1SMYD 2VPZA 1QDNA 1R27A 2R93A 1YNJD 2JIRA 5FTJA 1UHEA 1PPYA 3PLXB 1KQGA 3DMRA 1YNND 5C1BA 4KODA 3QQ8A 1TMOA 4D7ZB 1K83A 1SFOA 3IR5A 1PQEA 2A68D 3TIWA 1Y1VA 1PYQA 1AA6A 2BE5D 3TM7B 3GTMA 1IW7D 4GA5A 4AONB 2KI8A 4CS0A 3GTQA 1WCMA 1FDOA 1PT1A 1I50A 2JIMA 4AYBA 1FDIA 2PI8A 5DYGA 2E2IA 3CZBA 2PICA 4GA6A 1CR5A 4KLNA 1QCSA 1TWGA 2YUJA 3IR6A 3H0GA 2C45A 3GTGA 3ML1A 2E2HA 1H0HA 1E32A 1CZ4A 2WAQA 3HU3A 2CW0D 2G5DA 3GTPA 1OGYA 1E61A 1ZC1A 2PNWA 3QWZA 2GAEA 3HU2A 4CRZA 1R9TA 1YLEA 1PQFA 2JIQA 2NYAA 2PJHB 4KDIA 1G8JA 1UHDA 2A6HD 4RV0A 3CQZA 2JA7A 3O5AA 4QIWA 1PYUB 3QQ7A 3HKZA 4CRYG 4DMRA 4AOKB 3GTKA 5B6CA 1PT0A 2PJJA 2JIPA 2IV2X 4AAYA 2NAPA 1PQHA 3IR7A 1VC3B 2VPWA 2O5JD 1DMSA 2AE0X 2DMRA 1Q16A 1S3SA 1E5VA 2JIOA 3GTLA 5GLFA 1AW8B 1WLFA 1E18A 3QC8A 3GTJA 4NOHA 1SIWA 1H5NA 5FTMA 4C2MA 2NVXA 1Y5IA 4KDLA 2YU9A 2B63A 1R7RA 2Y0SA 1TWCA 1EU1A 1G8KA 1KQFA 2G6GA 1DMRA 3HU1A 2A6ED 2WB1A 3FKIA 5FTKA 1Y4ZA 5FTLA 5EPPA 5T5ID 1CZ5A 5T5MD 1TWAA 2A69D 2E7ZA 5C18A 2VUMA 4AZDA 1ZYRD 2PMZA 2JA6A 1TWHA 2V3VA 2VPXA 2VPYA 2R7ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CF2 A;  2NVY A;  1Y1W A;  2V45 A;  1E60 A;  3GTO A;  2R92 A;  5FTN A;  1TWF A;  5DYI A;  1I3Q A;  2EEO B;  4KO8 A;  2JA5 A;  3OUG A;  2VPZ A;  1QDN A;  1R27 A;  2R93 A;  2JIR A;  5FTJ A;  1UHE A;  1PPY A;  3PLX B;  1KQG A;  3DMR A;  5C1B A;  4KOD A;  3QQ8 A;  1TMO A;  4D7Z B;  1K83 A;  1SFO A;  3IR5 A;  1PQE A;  3TIW A;  1Y1V A;  1PYQ A;  1AA6 A;  3TM7 B;  3GTM A;  1IW7 D;  4GA5 A;  4AON B;  2KI8 A;  4CS0 A;  3GTQ A;  1WCM A;  1FDO A;  1PT1 A;  1I50 A;  2JIM A;  4AYB A;  1FDI A;  5DYG A;  2E2I A;  4GA6 A;  1CR5 A;  4KLN A;  1QCS A;  1TWG A;  3IR6 A;  3H0G A;  2C45 A;  3GTG A;  3ML1 A;  2E2H A;  1H0H A;  1E32 A;  1CZ4 A;  2WAQ A;  3HU3 A;  3GTP A;  1OGY A;  1E61 A;  3QWZ A;  3HU2 A;  4CRZ A;  1R9T A;  1YLE A;  1PQF A;  2JIQ A;  2NYA A;  2PJH B;  4KDI A;  1G8J A;  1UHD A;  4RV0 A;  3CQZ A;  2JA7 A;  3O5A A;  4QIW A;  1PYU B;  3QQ7 A;  3HKZ A;  4CRY G;  4DMR A;  4AOK B;  3GTK A;  5B6C A;  1PT0 A;  2JIP A;  2IV2 X;  4AAY A;  2NAP A;  1PQH A;  3IR7 A;  1VC3 B;  2VPW A;  1DMS A;  2DMR A;  1Q16 A;  1S3S A;  1E5V A;  2JIO A;  3GTL A;  5GLF A;  1AW8 B;  1WLF A;  1E18 A;  3QC8 A;  3GTJ A;  1SIW A;  1H5N A;  5FTM A;  4C2M A;  2NVX A;  1Y5I A;  4KDL A;  2YU9 A;  2B63 A;  1R7R A;  2Y0S A;  1TWC A;  1EU1 A;  1G8K A;  1KQF A;  1DMR A;  3HU1 A;  2WB1 A;  3FKI A;  5FTK A;  1Y4Z A;  5FTL A;  5EPP A;  5T5I D;  1CZ5 A;  5T5M D;  1TWA A;  2VUM A;  2E7Z A;  5C18 A;  4AZD A;  2PMZ A;  2JA6 A;  1TWH A;  2V3V A;  2VPX A;  2VPY A;  2R7Z A; 
#chains in the Genus database with same CATH topology
 3CF2 A;  2NVY A;  1Y1W A;  2V45 A;  4FFT A;  1E60 A;  4JCW A;  3GTO A;  2R92 A;  5FTN A;  1TWF A;  5DYI A;  1HD5 A;  2EEO B;  4KO8 A;  3X2L A;  3OUG A;  1I3Q A;  2JA5 A;  1SMY D;  2VPZ A;  1L8F A;  1QDN A;  1R27 A;  4FG4 A;  2R93 A;  1YNJ D;  2JIR A;  3X2H A;  5FTJ A;  1UHE A;  1PPY A;  3PLX B;  1KQG A;  3DMR A;  1YNN D;  5C1B A;  4KOD A;  3QQ8 A;  1TMO A;  4D7Z B;  1K83 A;  1SFO A;  3IR5 A;  4AVR A;  3X2G A;  1PQE A;  2A68 D;  3TIW A;  1Y1V A;  1PYQ A;  3D30 A;  1AA6 A;  2BE5 D;  4JP7 A;  3TM7 B;  3GTM A;  1IW7 D;  4GA5 A;  4AON B;  1OA7 A;  2KI8 A;  4CS0 A;  3GTQ A;  1WCM A;  1FDO A;  4JP6 A;  1PT1 A;  3ENG A;  1I50 A;  2JIM A;  5GLX A;  4AYB A;  1FDI A;  2PI8 A;  5DYG A;  2E2I A;  3CZB A;  3X2N A;  2PIC A;  4GA6 A;  1CR5 A;  4KLN A;  1QCS A;  1TWG A;  4FG2 A;  2YUJ A;  3IR6 A;  3H0G A;  2C45 A;  3GTG A;  3ML1 A;  2E2H A;  1H0H A;  1E32 A;  1CZ4 A;  2WAQ A;  4ENG A;  3HU3 A;  2CW0 D;  5GLY A;  2G5D A;  3GTP A;  1OGY A;  2HCZ X;  1E61 A;  1BW3 A;  4JJO A;  1ZC1 A;  2PNW A;  3QWZ A;  2GAE A;  3HU2 A;  4CRZ A;  1R9T A;  1YLE A;  1PQF A;  2JIQ A;  2NYA A;  2PJH B;  4KDI A;  1G8J A;  1UHD A;  2A6H D;  4RV0 A;  3CQZ A;  3SUK A;  2JA7 A;  3O5A A;  4QIW A;  1PYU B;  1OA9 A;  3QQ7 A;  3HKZ A;  4CRY G;  3X2I A;  4DMR A;  4L48 A;  4AOK B;  5B6C A;  1PT0 A;  2PJJ A;  2JIP A;  2IV2 X;  4AAY A;  3GTK A;  2NAP A;  2KQA A;  3X2P A;  1PQH A;  3IR7 A;  1WC2 A;  1VC3 B;  2VPW A;  2O5J D;  5GM9 A;  1DMS A;  2AE0 X;  2DMR A;  1Q16 A;  1S3S A;  1E5V A;  2JIO A;  3SUL A;  3GTL A;  5GLF A;  1AW8 B;  1WLF A;  3X2K A;  4ZM7 A;  1E18 A;  3QC8 A;  3SUJ A;  3GTJ A;  4NOH A;  4FER A;  1SIW A;  2BH0 A;  1H5N A;  5FTM A;  4C2M A;  2NVX A;  1Y5I A;  4KDL A;  2YU9 A;  2B63 A;  1R7R A;  2Y0S A;  3SUM A;  1TWC A;  1EU1 A;  3X2M A;  1G8K A;  5H4U A;  1KQF A;  2G6G A;  1DMR A;  3HU1 A;  3M3G A;  2A6E D;  2WB1 A;  3FKI A;  5FTK A;  3X2O A;  1Y4Z A;  1N10 A;  5FTL A;  5EPP A;  5T5I D;  1CZ5 A;  5T5M D;  1TWA A;  2A69 D;  2E7Z A;  5C18 A;  2VUM A;  4AZD A;  1ZYR D;  2PMZ A;  4JS7 A;  1BW4 A;  3X2J A;  2JA6 A;  1TWH A;  2V3V A;  2VPX A;  2ENG A;  2VPY A;  2R7Z A; 
#chains in the Genus database with same CATH homology
 3CF2 A;  2NVY A;  1Y1W A;  2V45 A;  1E60 A;  3GTO A;  2R92 A;  5FTN A;  1TWF A;  5DYI A;  1I3Q A;  2EEO B;  4KO8 A;  2JA5 A;  3OUG A;  1SMY D;  2VPZ A;  1QDN A;  1R27 A;  2R93 A;  1YNJ D;  2JIR A;  5FTJ A;  1UHE A;  1PPY A;  3PLX B;  1KQG A;  3DMR A;  1YNN D;  5C1B A;  4KOD A;  3QQ8 A;  1TMO A;  4D7Z B;  1K83 A;  1SFO A;  3IR5 A;  1PQE A;  2A68 D;  3TIW A;  1Y1V A;  1PYQ A;  1AA6 A;  2BE5 D;  3TM7 B;  3GTM A;  1IW7 D;  4GA5 A;  4AON B;  2KI8 A;  4CS0 A;  3GTQ A;  1WCM A;  1FDO A;  1PT1 A;  1I50 A;  2JIM A;  4AYB A;  1FDI A;  2PI8 A;  5DYG A;  2E2I A;  3CZB A;  2PIC A;  4GA6 A;  1CR5 A;  4KLN A;  1QCS A;  1TWG A;  2YUJ A;  3IR6 A;  3H0G A;  2C45 A;  3GTG A;  3ML1 A;  2E2H A;  1H0H A;  1E32 A;  1CZ4 A;  2WAQ A;  3HU3 A;  2CW0 D;  2G5D A;  3GTP A;  1OGY A;  1E61 A;  1ZC1 A;  2PNW A;  3QWZ A;  2GAE A;  3HU2 A;  4CRZ A;  1R9T A;  1YLE A;  1PQF A;  2JIQ A;  2NYA A;  2PJH B;  4KDI A;  1G8J A;  1UHD A;  2A6H D;  4RV0 A;  3CQZ A;  2JA7 A;  3O5A A;  4QIW A;  1PYU B;  3QQ7 A;  3HKZ A;  4CRY G;  4DMR A;  4AOK B;  3GTK A;  5B6C A;  1PT0 A;  2PJJ A;  2JIP A;  2IV2 X;  4AAY A;  2NAP A;  1PQH A;  3IR7 A;  1VC3 B;  2VPW A;  2O5J D;  1DMS A;  2AE0 X;  2DMR A;  1Q16 A;  1S3S A;  1E5V A;  2JIO A;  3GTL A;  5GLF A;  1AW8 B;  1WLF A;  1E18 A;  3QC8 A;  3GTJ A;  4NOH A;  1SIW A;  1H5N A;  5FTM A;  4C2M A;  2NVX A;  1Y5I A;  4KDL A;  2YU9 A;  2B63 A;  1R7R A;  2Y0S A;  1TWC A;  1EU1 A;  1G8K A;  1KQF A;  2G6G A;  1DMR A;  3HU1 A;  2A6E D;  2WB1 A;  3FKI A;  5FTK A;  1Y4Z A;  5FTL A;  5EPP A;  5T5I D;  1CZ5 A;  5T5M D;  1TWA A;  2A69 D;  2E7Z A;  5C18 A;  2VUM A;  4AZD A;  1ZYR D;  2PMZ A;  2JA6 A;  1TWH A;  2V3V A;  2VPX A;  2VPY A;  2R7Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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