1BW4A

Three-dimensional structure in solution of barwin, a protein from barley seed
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
125
structure length
125
Chain Sequence
b'EQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords BARWIN, BASIC BARLEY SEED PROTEIN
publication title Three-dimensional structure in solution of barwin, a protein from barley seed.
pubmed doi rcsb
source organism Hordeum vulgare
molecule tags Lectin
total genus 27
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 1992-07-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00967 Barwin Barwin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 1bw4A00
3SULA 4ENGA 4JP6A 2PNWA 3X2LA 3X2IA 1BW4A 5GLXA 5H4UA 4FFTA 3SUMA 2PJJA 1HD5A 2BH0A 4L48A 3M3GA 3X2PA 2KQAA 1OA7A 1N10A 4FG4A 1L8FA 3SUJA 1WC2A 4JCWA 3CZBA 3X2HA 3X2MA 3X2KA 3X2OA 5GLYA 5GM9A 3X2GA 3D30A 2HCZX 2AE0X 3SUKA 2ENGA 2PICA 3X2JA 1BW3A 3ENGA 4FERA 2G6GA 4AVRA 1OA9A 4JP7A 2G5DA 4JS7A 2GAEA 4FG2A 4JJOA 2PI8A 4ZM7A 3X2NA
chains in the Genus database with same CATH superfamily
2A68D 1E60A 1E32A 2NYAA 3SULA 1PT0A 3QWZA 2A69D 1TWHA 5EPPA 4DMRA 4KLNA 3TM7B 5DYGA 4FFTA 3SUMA 1UHDA 1HD5A 2PJJA 3IR6A 2CW0D 1CZ5A 1FDIA 2JA5A 1L8FA 1KQFA 1E61A 1TWFA 2JIOA 5FTMA 1H5NA 2JIQA 2EEOB 3D30A 1TWGA 2C45A 1PQEA 2VPZA 3X2JA 3ENGA 4CS0A 3GTQA 1QDNA 2E2IA 1Y1WA 1OA9A 5C1BA 1K83A 2YU9A 1AW8B 2GAEA 3CQZA 2WB1A 4AOKB 3X2NA 4GA5A 4D7ZB 3QC8A 4JP6A 4ENGA 2PNWA 1IW7D 5B6CA 1G8KA 3GTGA 1PT1A 1Q16A 2BH0A 1ZYRD 1PYUB 4KDIA 4QIWA 3X2PA 4AAYA 1PPYA 1OA7A 2E7ZA 2A6HD 3TIWA 3CF2A 3FKIA 1WC2A 1ZC1A 1TWAA 1SIWA 1CR5A 4JCWA 2R93A 3X2GA 1S3SA 2HCZX 3PLXB 1PYQA 1WCMA 1PQFA 3HU1A 2ENGA 1AA6A 2NVXA 5GLFA 2VUMA 1OGYA 3GTKA 4NOHA 3GTPA 3OUGA 1WLFA 2A6ED 5FTNA 3X2IA 1UHEA 1I3QA 1VC3B 2B63A 1KQGA 1BW4A 2VPWA 2YUJA 1EU1A 2DMRA 3HU2A 1FDOA 5H4UA 2O5JD 3M3GA 2JIPA 1H0HA 2KQAA 4AYBA 4FG4A 3IR7A 3GTMA 3SUJA 2R7ZA 1DMSA 3CZBA 1R7RA 1YLEA 3IR5A 3X2MA 3X2OA 1R27A 2JIRA 2NVYA 5FTJA 3H0GA 3GTLA 5T5MD 2JA6A 4FERA 2G6GA 4AVRA 3QQ8A 2NAPA 2R92A 2PJHB 4JS7A 4FG2A 4JJOA 1DMRA 2PI8A 4ZM7A 1BW3A 1E18A 1QCSA 1I50A 1Y1VA 1R9TA 2VPXA 1Y5IA 3X2LA 1SFOA 5FTLA 5GLXA 1PQHA 5T5ID 4KODA 4L48A 2IV2X 3GTOA 5C18A 3O5AA 1YNND 4AZDA 3HU3A 1N10A 4KDLA 5FTKA 4CRZA 3QQ7A 2Y0SA 2WAQA 3X2HA 3X2KA 4KO8A 5GLYA 5GM9A 5DYIA 3GTJA 3DMRA 2E2HA 1TWCA 4C2MA 2VPYA 3HKZA 2AE0X 3ML1A 3SUKA 2V45A 2JA7A 1E5VA 2KI8A 2PICA 4GA6A 4CRYG 1YNJD 2V3VA 1TMOA 4AONB 2BE5D 1SMYD 2JIMA 1CZ4A 2G5DA 4JP7A 4RV0A 2PMZA 1G8JA 1Y4ZA
chains in the Genus database with same CATH topology
3SULA 4ENGA 4JP6A 2PNWA 3X2LA 3X2IA 1BW4A 5GLXA 5H4UA 4FFTA 3SUMA 2PJJA 1HD5A 2BH0A 4L48A 3M3GA 3X2PA 2KQAA 1OA7A 1N10A 4FG4A 1L8FA 3SUJA 1WC2A 4JCWA 3CZBA 3X2HA 3X2MA 3X2KA 3X2OA 5GLYA 5GM9A 3X2GA 3D30A 2HCZX 2AE0X 3SUKA 2ENGA 2PICA 3X2JA 1BW3A 3ENGA 4FERA 2G6GA 4AVRA 1OA9A 4JP7A 2G5DA 4JS7A 2GAEA 4FG2A 4JJOA 2PI8A 4ZM7A 3X2NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SUL A;  4ENG A;  4JP6 A;  2PNW A;  3X2L A;  3X2I A;  1BW4 A;  5GLX A;  5H4U A;  4FFT A;  3SUM A;  2PJJ A;  1HD5 A;  2BH0 A;  4L48 A;  3M3G A;  3X2P A;  2KQA A;  1OA7 A;  1N10 A;  4FG4 A;  1L8F A;  3SUJ A;  1WC2 A;  4JCW A;  3CZB A;  3X2H A;  3X2M A;  3X2K A;  3X2O A;  5GLY A;  5GM9 A;  3X2G A;  3D30 A;  2HCZ X;  2AE0 X;  3SUK A;  2ENG A;  2PIC A;  3X2J A;  1BW3 A;  3ENG A;  4FER A;  2G6G A;  4AVR A;  1OA9 A;  4JP7 A;  2G5D A;  4JS7 A;  2GAE A;  4FG2 A;  4JJO A;  2PI8 A;  4ZM7 A;  3X2N A; 
#chains in the Genus database with same CATH topology
 2A68 D;  1E60 A;  1E32 A;  2NYA A;  3SUL A;  1PT0 A;  3QWZ A;  2A69 D;  1TWH A;  5EPP A;  4DMR A;  4KLN A;  3TM7 B;  5DYG A;  4FFT A;  3SUM A;  1UHD A;  1HD5 A;  2PJJ A;  3IR6 A;  2CW0 D;  1CZ5 A;  1FDI A;  2JA5 A;  1L8F A;  1KQF A;  1E61 A;  1TWF A;  2JIO A;  5FTM A;  1H5N A;  2JIQ A;  2EEO B;  3D30 A;  1TWG A;  2C45 A;  1PQE A;  2VPZ A;  3X2J A;  3ENG A;  4CS0 A;  3GTQ A;  1QDN A;  2E2I A;  1Y1W A;  1OA9 A;  5C1B A;  1K83 A;  2YU9 A;  1AW8 B;  2GAE A;  3CQZ A;  2WB1 A;  4AOK B;  3X2N A;  4GA5 A;  4D7Z B;  3QC8 A;  4JP6 A;  4ENG A;  2PNW A;  1IW7 D;  5B6C A;  1G8K A;  3GTG A;  1PT1 A;  1Q16 A;  2BH0 A;  1ZYR D;  1PYU B;  4KDI A;  4QIW A;  3X2P A;  4AAY A;  1PPY A;  1OA7 A;  2E7Z A;  2A6H D;  3TIW A;  3CF2 A;  3FKI A;  1WC2 A;  1ZC1 A;  1TWA A;  1SIW A;  1CR5 A;  4JCW A;  2R93 A;  3X2G A;  1S3S A;  2HCZ X;  3PLX B;  1PYQ A;  1WCM A;  1PQF A;  3HU1 A;  2ENG A;  1AA6 A;  2NVX A;  5GLF A;  2VUM A;  1OGY A;  3GTK A;  4NOH A;  3GTP A;  3OUG A;  1WLF A;  2A6E D;  5FTN A;  3X2I A;  1UHE A;  1I3Q A;  1VC3 B;  2B63 A;  1KQG A;  1BW4 A;  2VPW A;  2YUJ A;  1EU1 A;  2DMR A;  3HU2 A;  1FDO A;  5H4U A;  2O5J D;  3M3G A;  2JIP A;  1H0H A;  2KQA A;  4AYB A;  4FG4 A;  3IR7 A;  3GTM A;  3SUJ A;  2R7Z A;  1DMS A;  3CZB A;  1R7R A;  1YLE A;  3IR5 A;  3X2M A;  3X2O A;  1R27 A;  2JIR A;  2NVY A;  5FTJ A;  3H0G A;  3GTL A;  5T5M D;  2JA6 A;  4FER A;  2G6G A;  4AVR A;  3QQ8 A;  2NAP A;  2R92 A;  2PJH B;  4JS7 A;  4FG2 A;  4JJO A;  1DMR A;  2PI8 A;  4ZM7 A;  1BW3 A;  1E18 A;  1QCS A;  1I50 A;  1Y1V A;  1R9T A;  2VPX A;  1Y5I A;  3X2L A;  1SFO A;  5FTL A;  5GLX A;  1PQH A;  5T5I D;  4KOD A;  4L48 A;  2IV2 X;  3GTO A;  5C18 A;  3O5A A;  1YNN D;  4AZD A;  3HU3 A;  1N10 A;  4KDL A;  5FTK A;  4CRZ A;  3QQ7 A;  2Y0S A;  2WAQ A;  3X2H A;  3X2K A;  4KO8 A;  5GLY A;  5GM9 A;  5DYI A;  3GTJ A;  3DMR A;  2E2H A;  1TWC A;  4C2M A;  2VPY A;  3HKZ A;  2AE0 X;  3ML1 A;  3SUK A;  2V45 A;  2JA7 A;  1E5V A;  2KI8 A;  2PIC A;  4GA6 A;  4CRY G;  1YNJ D;  2V3V A;  1TMO A;  4AON B;  2BE5 D;  1SMY D;  2JIM A;  1CZ4 A;  2G5D A;  4JP7 A;  4RV0 A;  2PMZ A;  1G8J A;  1Y4Z A; 
#chains in the Genus database with same CATH homology
 3SUL A;  4ENG A;  4JP6 A;  2PNW A;  3X2L A;  3X2I A;  1BW4 A;  5GLX A;  5H4U A;  4FFT A;  3SUM A;  2PJJ A;  1HD5 A;  2BH0 A;  4L48 A;  3M3G A;  3X2P A;  2KQA A;  1OA7 A;  1N10 A;  4FG4 A;  1L8F A;  3SUJ A;  1WC2 A;  4JCW A;  3CZB A;  3X2H A;  3X2M A;  3X2K A;  3X2O A;  5GLY A;  5GM9 A;  3X2G A;  3D30 A;  2HCZ X;  2AE0 X;  3SUK A;  2ENG A;  2PIC A;  3X2J A;  1BW3 A;  3ENG A;  4FER A;  2G6G A;  4AVR A;  1OA9 A;  4JP7 A;  2G5D A;  4JS7 A;  2GAE A;  4FG2 A;  4JJO A;  2PI8 A;  4ZM7 A;  3X2N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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