1BW4A

Three-dimensional structure in solution of barwin, a protein from barley seed
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
125
structure length
125
Chain Sequence
EQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Three-dimensional structure in solution of barwin, a protein from barley seed.
pubmed doi rcsb
molecule tags Lectin
source organism Hordeum vulgare
molecule keywords BARWIN, BASIC BARLEY SEED PROTEIN
total genus 27
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 1992-07-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00967 Barwin Barwin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 1bw4A00
3SULA 2ENGA 3SUJA 4FG4A 3SUKA 3X2GA 3X2OA 3CZBA 4ZM7A 3X2NA 2GAEA 3X2KA 2G6GA 5GLXA 4JCWA 4JP6A 5GM9A 3X2HA 1N10A 3X2MA 2HCZX 2PI8A 4FG2A 4JS7A 5GLYA 2PICA 3X2LA 1OA7A 1HD5A 1BW3A 4JP7A 2AE0X 3X2PA 2BH0A 3ENGA 1L8FA 4FERA 3X2JA 3M3GA 3D30A 2G5DA 3SUMA 4AVRA 1OA9A 4JJOA 4FFTA 2KQAA 2PNWA 2PJJA 4ENGA 1WC2A 4L48A 5H4UA 1BW4A 3X2IA
chains in the Genus database with same CATH superfamily
2JIRA 3SULA 1PPYA 3SUJA 3SUKA 5FTMA 2PMZA 3X2OA 4ZM7A 3X2NA 1E32A 3QQ7A 5GM9A 3IR5A 4JP6A 2BE5D 1N10A 4C2MA 2HCZX 2JIQA 4GA6A 3X2LA 2JA7A 2AE0X 4RV0A 2BH0A 3X2PA 1L8FA 2NVYA 2CW0D 3GTJA 1CZ4A 1KQFA 3FKIA 3X2JA 2B63A 4KLNA 2VPWA 4AAYA 1R7RA 3GTGA 4JJOA 1H0HA 1TWGA 2KQAA 2VUMA 3HU2A 1WCMA 3O5AA 4CS0A 4ENGA 1FDIA 4QIWA 1Y1WA 1AW8B 1TWFA 3X2IA 3IR6A 1E5VA 1YLEA 1PQHA 1VC3B 2IV2X 1E61A 4CRZA 4FG4A 1KQGA 1SFOA 1UHEA 2PJHB 1G8KA 3CQZA 4JCWA 3X2HA 5DYGA 3GTKA 4KDLA 3TIWA 5FTKA 4JS7A 3TM7B 5GLYA 1YNJD 2A6ED 3DMRA 1QDNA 1SIWA 2WB1A 3ENGA 3GTOA 3QQ8A 4FERA 2JA5A 3M3GA 3GTMA 2R7ZA 1Y5IA 4AONB 4DMRA 4KO8A 1OA9A 2WAQA 2VPZA 2E2HA 1TWHA 1PQFA 1TWAA 1PQEA 1WC2A 1I50A 4L48A 1OGYA 1K83A 4KDIA 2R92A 2YU9A 1BW4A 5T5ID 2JIOA 1QCSA 2NYAA 1Y1VA 2KI8A 2VPXA 2ENGA 2JIMA 3PLXB 3H0GA 3QC8A 5C18A 2GAEA 1S3SA 3X2KA 5GLXA 5FTNA 1TMOA 1ZC1A 2A68D 1PT0A 1H5NA 3X2MA 2PI8A 2JA6A 1CR5A 5FTLA 2PICA 1R27A 1OA7A 1HD5A 1PT1A 1BW3A 3GTQA 3HKZA 1PYUB 5B6CA 5FTJA 1AA6A 2A69D 3D30A 1E18A 3HU1A 5C1BA 1IW7D 1ZYRD 4FFTA 1SMYD 1YNND 2O5JD 1EU1A 2JIPA 1FDOA 1TWCA 2NAPA 3OUGA 2A6HD 3GTLA 1I3QA 4AYBA 3X2GA 1PYQA 2EEOB 2DMRA 3CZBA 4NOHA 4CRYG 2V3VA 2G6GA 4GA5A 1Y4ZA 2E2IA 1R9TA 4FG2A 2V45A 4AZDA 1UHDA 2C45A 5DYIA 1DMSA 5T5MD 1E60A 2Y0SA 4JP7A 2VPYA 3ML1A 4D7ZB 3IR7A 2YUJA 1CZ5A 3GTPA 2G5DA 3SUMA 4AVRA 2E7ZA 4AOKB 2PNWA 3HU3A 2PJJA 3QWZA 1DMRA 4KODA 5GLFA 2R93A 5EPPA 2NVXA 1WLFA 5H4UA 3CF2A 1Q16A 1G8JA
chains in the Genus database with same CATH topology
3SULA 2ENGA 3SUJA 4FG4A 3SUKA 3X2GA 3X2OA 3CZBA 4ZM7A 3X2NA 2GAEA 3X2KA 2G6GA 5GLXA 4JCWA 4JP6A 5GM9A 3X2HA 1N10A 3X2MA 2HCZX 2PI8A 4FG2A 4JS7A 5GLYA 2PICA 3X2LA 1OA7A 1HD5A 1BW3A 4JP7A 2AE0X 3X2PA 2BH0A 3ENGA 1L8FA 4FERA 3X2JA 3M3GA 3D30A 2G5DA 3SUMA 4AVRA 1OA9A 4JJOA 4FFTA 2KQAA 2PNWA 2PJJA 4ENGA 1WC2A 4L48A 5H4UA 1BW4A 3X2IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SUL A;  2ENG A;  3SUJ A;  4FG4 A;  3SUK A;  3X2G A;  3X2O A;  3CZB A;  4ZM7 A;  3X2N A;  2GAE A;  3X2K A;  2G6G A;  5GLX A;  4JCW A;  4JP6 A;  5GM9 A;  3X2H A;  1N10 A;  3X2M A;  2HCZ X;  2PI8 A;  4FG2 A;  4JS7 A;  5GLY A;  2PIC A;  3X2L A;  1OA7 A;  1HD5 A;  1BW3 A;  4JP7 A;  2AE0 X;  3X2P A;  2BH0 A;  3ENG A;  1L8F A;  4FER A;  3X2J A;  3M3G A;  3D30 A;  2G5D A;  3SUM A;  4AVR A;  1OA9 A;  4JJO A;  4FFT A;  2KQA A;  2PNW A;  2PJJ A;  4ENG A;  1WC2 A;  4L48 A;  5H4U A;  1BW4 A;  3X2I A; 
#chains in the Genus database with same CATH topology
 2JIR A;  3SUL A;  1PPY A;  3SUJ A;  3SUK A;  5FTM A;  2PMZ A;  3X2O A;  4ZM7 A;  3X2N A;  1E32 A;  3QQ7 A;  5GM9 A;  3IR5 A;  4JP6 A;  2BE5 D;  1N10 A;  4C2M A;  2HCZ X;  2JIQ A;  4GA6 A;  3X2L A;  2JA7 A;  2AE0 X;  4RV0 A;  2BH0 A;  3X2P A;  1L8F A;  2NVY A;  2CW0 D;  3GTJ A;  1CZ4 A;  1KQF A;  3FKI A;  3X2J A;  2B63 A;  4KLN A;  2VPW A;  4AAY A;  1R7R A;  3GTG A;  4JJO A;  1H0H A;  1TWG A;  2KQA A;  2VUM A;  3HU2 A;  1WCM A;  3O5A A;  4CS0 A;  4ENG A;  1FDI A;  4QIW A;  1Y1W A;  1AW8 B;  1TWF A;  3X2I A;  3IR6 A;  1E5V A;  1YLE A;  1PQH A;  1VC3 B;  2IV2 X;  1E61 A;  4CRZ A;  4FG4 A;  1KQG A;  1SFO A;  1UHE A;  2PJH B;  1G8K A;  3CQZ A;  4JCW A;  3X2H A;  5DYG A;  3GTK A;  4KDL A;  3TIW A;  5FTK A;  4JS7 A;  3TM7 B;  5GLY A;  1YNJ D;  2A6E D;  3DMR A;  1QDN A;  1SIW A;  2WB1 A;  3ENG A;  3GTO A;  3QQ8 A;  4FER A;  2JA5 A;  3M3G A;  3GTM A;  2R7Z A;  1Y5I A;  4AON B;  4DMR A;  4KO8 A;  1OA9 A;  2WAQ A;  2VPZ A;  2E2H A;  1TWH A;  1PQF A;  1TWA A;  1PQE A;  1WC2 A;  1I50 A;  4L48 A;  1OGY A;  1K83 A;  4KDI A;  2R92 A;  2YU9 A;  1BW4 A;  5T5I D;  2JIO A;  1QCS A;  2NYA A;  1Y1V A;  2KI8 A;  2VPX A;  2ENG A;  2JIM A;  3PLX B;  3H0G A;  3QC8 A;  5C18 A;  2GAE A;  1S3S A;  3X2K A;  5GLX A;  5FTN A;  1TMO A;  1ZC1 A;  2A68 D;  1PT0 A;  1H5N A;  3X2M A;  2PI8 A;  2JA6 A;  1CR5 A;  5FTL A;  2PIC A;  1R27 A;  1OA7 A;  1HD5 A;  1PT1 A;  1BW3 A;  3GTQ A;  3HKZ A;  1PYU B;  5B6C A;  5FTJ A;  1AA6 A;  2A69 D;  3D30 A;  1E18 A;  3HU1 A;  5C1B A;  1IW7 D;  1ZYR D;  4FFT A;  1SMY D;  1YNN D;  2O5J D;  1EU1 A;  2JIP A;  1FDO A;  1TWC A;  2NAP A;  3OUG A;  2A6H D;  3GTL A;  1I3Q A;  4AYB A;  3X2G A;  1PYQ A;  2EEO B;  2DMR A;  3CZB A;  4NOH A;  4CRY G;  2V3V A;  2G6G A;  4GA5 A;  1Y4Z A;  2E2I A;  1R9T A;  4FG2 A;  2V45 A;  4AZD A;  1UHD A;  2C45 A;  5DYI A;  1DMS A;  5T5M D;  1E60 A;  2Y0S A;  4JP7 A;  2VPY A;  3ML1 A;  4D7Z B;  3IR7 A;  2YUJ A;  1CZ5 A;  3GTP A;  2G5D A;  3SUM A;  4AVR A;  2E7Z A;  4AOK B;  2PNW A;  3HU3 A;  2PJJ A;  3QWZ A;  1DMR A;  4KOD A;  5GLF A;  2R93 A;  5EPP A;  2NVX A;  1WLF A;  5H4U A;  3CF2 A;  1Q16 A;  1G8J A; 
#chains in the Genus database with same CATH homology
 3SUL A;  2ENG A;  3SUJ A;  4FG4 A;  3SUK A;  3X2G A;  3X2O A;  3CZB A;  4ZM7 A;  3X2N A;  2GAE A;  3X2K A;  2G6G A;  5GLX A;  4JCW A;  4JP6 A;  5GM9 A;  3X2H A;  1N10 A;  3X2M A;  2HCZ X;  2PI8 A;  4FG2 A;  4JS7 A;  5GLY A;  2PIC A;  3X2L A;  1OA7 A;  1HD5 A;  1BW3 A;  4JP7 A;  2AE0 X;  3X2P A;  2BH0 A;  3ENG A;  1L8F A;  4FER A;  3X2J A;  3M3G A;  3D30 A;  2G5D A;  3SUM A;  4AVR A;  1OA9 A;  4JJO A;  4FFT A;  2KQA A;  2PNW A;  2PJJ A;  4ENG A;  1WC2 A;  4L48 A;  5H4U A;  1BW4 A;  3X2I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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