1BW4A

Three-dimensional structure in solution of barwin, a protein from barley seed
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
125
structure length
125
Chain Sequence
EQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Three-dimensional structure in solution of barwin, a protein from barley seed.
pubmed doi rcsb
source organism Hordeum vulgare
molecule tags Lectin
molecule keywords BARWIN, BASIC BARLEY SEED PROTEIN
total genus 27
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 1992-07-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00967 Barwin Barwin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 1bw4A00
3CZBA 3SUMA 2PNWA 1N10A 3X2IA 3SUJA 5GM9A 3SUKA 2ENGA 2G6GA 4JP6A 2PICA 4L48A 3D30A 5GLYA 2G5DA 2BH0A 3X2PA 5GLXA 4JS7A 3X2HA 5H4UA 4JJOA 3X2LA 1OA9A 4FG2A 3X2NA 3X2KA 1BW4A 1OA7A 4ENGA 2GAEA 3M3GA 3ENGA 4FFTA 4FG4A 4JP7A 3X2GA 4AVRA 3X2MA 2AE0X 2PJJA 1WC2A 4JCWA 3X2OA 3SULA 1L8FA 4FERA 3X2JA 2HCZX 1HD5A 2PI8A 4ZM7A 2KQAA 1BW3A
chains in the Genus database with same CATH superfamily
1TMOA 3X2IA 3SUJA 4KO8A 5T5ID 1TWFA 2VPXA 5FTNA 5T5MD 2JA6A 1AW8B 2JIQA 4KDLA 1R27A 3QQ8A 5DYIA 1R9TA 4CRZA 4L48A 2YU9A 2R93A 1TWAA 2G5DA 3X2PA 1ZC1A 2WAQA 4DMRA 4C2MA 1R7RA 1Y1WA 5H4UA 1KQFA 4JJOA 1PYQA 4FG2A 3QC8A 2Y0SA 2YUJA 5FTKA 1YLEA 1UHEA 2CW0D 2DMRA 3HU1A 1ZYRD 3ENGA 3OUGA 4FG4A 3HKZA 3GTGA 1TWHA 1SMYD 1H5NA 1G8KA 1WC2A 2R92A 2O5JD 1Y4ZA 5GLFA 4AONB 2VUMA 3HU2A 2NVYA 2NAPA 1I50A 2NVXA 4CRYG 3SUMA 2PNWA 1N10A 1WCMA 1E32A 1CZ4A 1SIWA 2A68D 3IR7A 4JP6A 5C1BA 2B63A 3GTQA 3D30A 4RV0A 5FTJA 3HU3A 5FTLA 4KODA 4GA6A 1PQHA 1QCSA 1DMRA 2WB1A 2E7ZA 2A6ED 3FKIA 3QQ7A 3X2KA 1BW4A 4KDIA 3H0GA 1DMSA 1Y5IA 4ENGA 1UHDA 1VC3B 1G8JA 3IR6A 4KLNA 4CS0A 1QDNA 5FTMA 3GTJA 2VPWA 1AA6A 1L8FA 2JIRA 1E18A 1S3SA 2HCZX 4ZM7A 2KI8A 3CF2A 2JA7A 3CZBA 1FDOA 3GTLA 2G6GA 2PICA 4AYBA 2EEOB 5GLYA 4AZDA 1E5VA 2V3VA 3CQZA 3PLXB 5B6CA 1YNND 3GTPA 1KQGA 3X2HA 2JA5A 3O5AA 3X2NA 1IW7D 3GTOA 2PJHB 3QWZA 2VPZA 1TWCA 3DMRA 2VPYA 2GAEA 3M3GA 1E61A 4FFTA 2IV2X 1WLFA 4NOHA 4AOKB 1K83A 3X2GA 4AVRA 3X2MA 3SULA 4QIWA 4D7ZB 3X2JA 1CR5A 2PI8A 1EU1A 1YNJD 1FDIA 1BW3A 1CZ5A 5C18A 5GM9A 1PPYA 3SUKA 2ENGA 2JIPA 1E60A 1PQEA 1I3QA 3GTKA 2JIMA 1PQFA 2C45A 1H0HA 3TIWA 2BH0A 2A6HD 2PMZA 5GLXA 2E2HA 4JS7A 1OGYA 1PYUB 5EPPA 1OA9A 3TM7B 3X2LA 2E2IA 2A69D 1PT1A 2R7ZA 1OA7A 4GA5A 2NYAA 4JP7A 2JIOA 3GTMA 1PT0A 1Q16A 1TWGA 2AE0X 2PJJA 4JCWA 2BE5D 5DYGA 3X2OA 4FERA 1Y1VA 3ML1A 4AAYA 1HD5A 1SFOA 2KQAA 3IR5A 2V45A
chains in the Genus database with same CATH topology
3CZBA 3SUMA 2PNWA 1N10A 3X2IA 3SUJA 5GM9A 3SUKA 2ENGA 2G6GA 4JP6A 2PICA 4L48A 3D30A 5GLYA 2G5DA 2BH0A 3X2PA 5GLXA 4JS7A 3X2HA 5H4UA 4JJOA 3X2LA 1OA9A 4FG2A 3X2NA 3X2KA 1BW4A 1OA7A 4ENGA 2GAEA 3M3GA 3ENGA 4FFTA 4FG4A 4JP7A 3X2GA 4AVRA 3X2MA 2AE0X 2PJJA 1WC2A 4JCWA 3X2OA 3SULA 1L8FA 4FERA 3X2JA 2HCZX 1HD5A 2PI8A 4ZM7A 2KQAA 1BW3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CZB A;  3SUM A;  2PNW A;  1N10 A;  3X2I A;  3SUJ A;  5GM9 A;  3SUK A;  2ENG A;  2G6G A;  4JP6 A;  2PIC A;  4L48 A;  3D30 A;  5GLY A;  2G5D A;  2BH0 A;  3X2P A;  5GLX A;  4JS7 A;  3X2H A;  5H4U A;  4JJO A;  3X2L A;  1OA9 A;  4FG2 A;  3X2N A;  3X2K A;  1BW4 A;  1OA7 A;  4ENG A;  2GAE A;  3M3G A;  3ENG A;  4FFT A;  4FG4 A;  4JP7 A;  3X2G A;  4AVR A;  3X2M A;  2AE0 X;  2PJJ A;  1WC2 A;  4JCW A;  3X2O A;  3SUL A;  1L8F A;  4FER A;  3X2J A;  2HCZ X;  1HD5 A;  2PI8 A;  4ZM7 A;  2KQA A;  1BW3 A; 
#chains in the Genus database with same CATH topology
 1TMO A;  3X2I A;  3SUJ A;  4KO8 A;  5T5I D;  1TWF A;  2VPX A;  5FTN A;  5T5M D;  2JA6 A;  1AW8 B;  2JIQ A;  4KDL A;  1R27 A;  3QQ8 A;  5DYI A;  1R9T A;  4CRZ A;  4L48 A;  2YU9 A;  2R93 A;  1TWA A;  2G5D A;  3X2P A;  1ZC1 A;  2WAQ A;  4DMR A;  4C2M A;  1R7R A;  1Y1W A;  5H4U A;  1KQF A;  4JJO A;  1PYQ A;  4FG2 A;  3QC8 A;  2Y0S A;  2YUJ A;  5FTK A;  1YLE A;  1UHE A;  2CW0 D;  2DMR A;  3HU1 A;  1ZYR D;  3ENG A;  3OUG A;  4FG4 A;  3HKZ A;  3GTG A;  1TWH A;  1SMY D;  1H5N A;  1G8K A;  1WC2 A;  2R92 A;  2O5J D;  1Y4Z A;  5GLF A;  4AON B;  2VUM A;  3HU2 A;  2NVY A;  2NAP A;  1I50 A;  2NVX A;  4CRY G;  3SUM A;  2PNW A;  1N10 A;  1WCM A;  1E32 A;  1CZ4 A;  1SIW A;  2A68 D;  3IR7 A;  4JP6 A;  5C1B A;  2B63 A;  3GTQ A;  3D30 A;  4RV0 A;  5FTJ A;  3HU3 A;  5FTL A;  4KOD A;  4GA6 A;  1PQH A;  1QCS A;  1DMR A;  2WB1 A;  2E7Z A;  2A6E D;  3FKI A;  3QQ7 A;  3X2K A;  1BW4 A;  4KDI A;  3H0G A;  1DMS A;  1Y5I A;  4ENG A;  1UHD A;  1VC3 B;  1G8J A;  3IR6 A;  4KLN A;  4CS0 A;  1QDN A;  5FTM A;  3GTJ A;  2VPW A;  1AA6 A;  1L8F A;  2JIR A;  1E18 A;  1S3S A;  2HCZ X;  4ZM7 A;  2KI8 A;  3CF2 A;  2JA7 A;  3CZB A;  1FDO A;  3GTL A;  2G6G A;  2PIC A;  4AYB A;  2EEO B;  5GLY A;  4AZD A;  1E5V A;  2V3V A;  3CQZ A;  3PLX B;  5B6C A;  1YNN D;  3GTP A;  1KQG A;  3X2H A;  2JA5 A;  3O5A A;  3X2N A;  1IW7 D;  3GTO A;  2PJH B;  3QWZ A;  2VPZ A;  1TWC A;  3DMR A;  2VPY A;  2GAE A;  3M3G A;  1E61 A;  4FFT A;  2IV2 X;  1WLF A;  4NOH A;  4AOK B;  1K83 A;  3X2G A;  4AVR A;  3X2M A;  3SUL A;  4QIW A;  4D7Z B;  3X2J A;  1CR5 A;  2PI8 A;  1EU1 A;  1YNJ D;  1FDI A;  1BW3 A;  1CZ5 A;  5C18 A;  5GM9 A;  1PPY A;  3SUK A;  2ENG A;  2JIP A;  1E60 A;  1PQE A;  1I3Q A;  3GTK A;  2JIM A;  1PQF A;  2C45 A;  1H0H A;  3TIW A;  2BH0 A;  2A6H D;  2PMZ A;  5GLX A;  2E2H A;  4JS7 A;  1OGY A;  1PYU B;  5EPP A;  1OA9 A;  3TM7 B;  3X2L A;  2E2I A;  2A69 D;  1PT1 A;  2R7Z A;  1OA7 A;  4GA5 A;  2NYA A;  4JP7 A;  2JIO A;  3GTM A;  1PT0 A;  1Q16 A;  1TWG A;  2AE0 X;  2PJJ A;  4JCW A;  2BE5 D;  5DYG A;  3X2O A;  4FER A;  1Y1V A;  3ML1 A;  4AAY A;  1HD5 A;  1SFO A;  2KQA A;  3IR5 A;  2V45 A; 
#chains in the Genus database with same CATH homology
 3CZB A;  3SUM A;  2PNW A;  1N10 A;  3X2I A;  3SUJ A;  5GM9 A;  3SUK A;  2ENG A;  2G6G A;  4JP6 A;  2PIC A;  4L48 A;  3D30 A;  5GLY A;  2G5D A;  2BH0 A;  3X2P A;  5GLX A;  4JS7 A;  3X2H A;  5H4U A;  4JJO A;  3X2L A;  1OA9 A;  4FG2 A;  3X2N A;  3X2K A;  1BW4 A;  1OA7 A;  4ENG A;  2GAE A;  3M3G A;  3ENG A;  4FFT A;  4FG4 A;  4JP7 A;  3X2G A;  4AVR A;  3X2M A;  2AE0 X;  2PJJ A;  1WC2 A;  4JCW A;  3X2O A;  3SUL A;  1L8F A;  4FER A;  3X2J A;  2HCZ X;  1HD5 A;  2PI8 A;  4ZM7 A;  2KQA A;  1BW3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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