1BW4A

Three-dimensional structure in solution of barwin, a protein from barley seed
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
125
structure length
125
Chain Sequence
EQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords BARWIN, BASIC BARLEY SEED PROTEIN
publication title Three-dimensional structure in solution of barwin, a protein from barley seed.
pubmed doi rcsb
source organism Hordeum vulgare
molecule tags Lectin
total genus 27
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 1992-07-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00967 Barwin Barwin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 1bw4A00
2PJJA 3X2KA 2PNWA 2G6GA 2PI8A 5GLYA 4JP6A 1WC2A 3D30A 3X2JA 2BH0A 1OA7A 3X2LA 3X2IA 3X2HA 3SUJA 1L8FA 4JJOA 2G5DA 3X2NA 2GAEA 4JCWA 4ZM7A 3SUMA 3X2OA 3ENGA 3CZBA 3X2MA 3X2GA 3SUKA 4ENGA 2ENGA 4AVRA 5H4UA 2PICA 1BW4A 5GLXA 4JS7A 3X2PA 1OA9A 4FERA 2KQAA 4FG4A 2HCZX 3SULA 4JP7A 2AE0X 3M3GA 4L48A 5GM9A 1N10A 4FG2A 1HD5A 1BW3A 4FFTA
chains in the Genus database with same CATH superfamily
1G8KA 1TWAA 3X2KA 2V3VA 5DYGA 1E60A 3QQ7A 4KLNA 1R7RA 2A68D 4ZM7A 3SUMA 3IR6A 1Y4ZA 3IR5A 1E5VA 3HU3A 1TWGA 3SUKA 4ENGA 2YU9A 1KQFA 2VPWA 1QDNA 3GTMA 5GLXA 2R92A 4D7ZB 2R7ZA 3GTJA 3GTOA 1FDOA 1PT1A 1YNJD 3CQZA 3IR7A 4FG2A 1CZ4A 2DMRA 1AW8B 4JP6A 4CRZA 2E2HA 2JA7A 4FFTA 1G8JA 3GTKA 2PJJA 2V45A 2JA6A 3O5AA 2G6GA 2PI8A 3HU2A 1WC2A 1TWHA 1PQEA 3TM7B 1OA7A 1UHDA 1E32A 3X2LA 3X2IA 2NYAA 4AAYA 3X2HA 1L8FA 4JJOA 1E61A 2JIPA 4GA6A 2PJHB 3GTQA 5FTJA 3X2MA 3TIWA 3X2GA 3OUGA 5FTKA 2PMZA 4AOKB 3GTPA 2ENGA 2JIMA 4AVRA 1PQFA 4AYBA 3QWZA 2Y0SA 5T5ID 1PYQA 3X2PA 1SMYD 1KQGA 3HKZA 4KODA 2IV2X 1H0HA 4FG4A 1VC3B 2KI8A 3ML1A 2HCZX 5DYIA 4CS0A 4DMRA 2AE0X 3M3GA 2NVXA 1N10A 5T5MD 3PLXB 1K83A 2WAQA 1OGYA 1YLEA 1BW3A 1PPYA 2PNWA 5C18A 1WCMA 1QCSA 4NOHA 3D30A 1DMSA 3X2JA 1CR5A 2BH0A 2JIOA 2JIQA 1ZYRD 4KDLA 5FTMA 3SUJA 1UHEA 5FTLA 2G5DA 4AZDA 1CZ5A 3ENGA 3CF2A 3CZBA 2JIRA 1BW4A 1WLFA 4RV0A 5FTNA 3GTLA 1OA9A 2VUMA 4FERA 2JA5A 1Q16A 1IW7D 2KQAA 5C1BA 3SULA 2E7ZA 4JP7A 1I50A 4L48A 1YNND 5GLFA 2A6ED 3FKIA 1DMRA 2VPXA 2WB1A 1PQHA 2VPZA 5B6CA 4GA5A 5GLYA 5EPPA 1H5NA 2A6HD 4KDIA 3H0GA 1PYUB 4QIWA 1Y1VA 1E18A 4CRYG 2R93A 1TMOA 1Y5IA 3X2NA 2GAEA 4JCWA 3X2OA 1TWCA 2CW0D 3DMRA 3HU1A 1TWFA 1AA6A 4C2MA 1Y1WA 1R27A 2A69D 5H4UA 2PICA 2B63A 3GTGA 4JS7A 2YUJA 1SIWA 2BE5D 2NVYA 1FDIA 4AONB 2E2IA 2EEOB 1R9TA 3QC8A 1ZC1A 1S3SA 2VPYA 1SFOA 2NAPA 5GM9A 2O5JD 3QQ8A 1I3QA 2C45A 1EU1A 4KO8A 1HD5A 1PT0A
chains in the Genus database with same CATH topology
2PJJA 3X2KA 2PNWA 2G6GA 2PI8A 5GLYA 4JP6A 1WC2A 3D30A 3X2JA 2BH0A 1OA7A 3X2LA 3X2IA 3X2HA 3SUJA 1L8FA 4JJOA 2G5DA 3X2NA 2GAEA 4JCWA 4ZM7A 3SUMA 3X2OA 3ENGA 3CZBA 3X2MA 3X2GA 3SUKA 4ENGA 2ENGA 4AVRA 5H4UA 2PICA 1BW4A 5GLXA 4JS7A 3X2PA 1OA9A 4FERA 2KQAA 4FG4A 2HCZX 3SULA 4JP7A 2AE0X 3M3GA 4L48A 5GM9A 1N10A 4FG2A 1HD5A 1BW3A 4FFTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PJJ A;  3X2K A;  2PNW A;  2G6G A;  2PI8 A;  5GLY A;  4JP6 A;  1WC2 A;  3D30 A;  3X2J A;  2BH0 A;  1OA7 A;  3X2L A;  3X2I A;  3X2H A;  3SUJ A;  1L8F A;  4JJO A;  2G5D A;  3X2N A;  2GAE A;  4JCW A;  4ZM7 A;  3SUM A;  3X2O A;  3ENG A;  3CZB A;  3X2M A;  3X2G A;  3SUK A;  4ENG A;  2ENG A;  4AVR A;  5H4U A;  2PIC A;  1BW4 A;  5GLX A;  4JS7 A;  3X2P A;  1OA9 A;  4FER A;  2KQA A;  4FG4 A;  2HCZ X;  3SUL A;  4JP7 A;  2AE0 X;  3M3G A;  4L48 A;  5GM9 A;  1N10 A;  4FG2 A;  1HD5 A;  1BW3 A;  4FFT A; 
#chains in the Genus database with same CATH topology
 1G8K A;  1TWA A;  3X2K A;  2V3V A;  5DYG A;  1E60 A;  3QQ7 A;  4KLN A;  1R7R A;  2A68 D;  4ZM7 A;  3SUM A;  3IR6 A;  1Y4Z A;  3IR5 A;  1E5V A;  3HU3 A;  1TWG A;  3SUK A;  4ENG A;  2YU9 A;  1KQF A;  2VPW A;  1QDN A;  3GTM A;  5GLX A;  2R92 A;  4D7Z B;  2R7Z A;  3GTJ A;  3GTO A;  1FDO A;  1PT1 A;  1YNJ D;  3CQZ A;  3IR7 A;  4FG2 A;  1CZ4 A;  2DMR A;  1AW8 B;  4JP6 A;  4CRZ A;  2E2H A;  2JA7 A;  4FFT A;  1G8J A;  3GTK A;  2PJJ A;  2V45 A;  2JA6 A;  3O5A A;  2G6G A;  2PI8 A;  3HU2 A;  1WC2 A;  1TWH A;  1PQE A;  3TM7 B;  1OA7 A;  1UHD A;  1E32 A;  3X2L A;  3X2I A;  2NYA A;  4AAY A;  3X2H A;  1L8F A;  4JJO A;  1E61 A;  2JIP A;  4GA6 A;  2PJH B;  3GTQ A;  5FTJ A;  3X2M A;  3TIW A;  3X2G A;  3OUG A;  5FTK A;  2PMZ A;  4AOK B;  3GTP A;  2ENG A;  2JIM A;  4AVR A;  1PQF A;  4AYB A;  3QWZ A;  2Y0S A;  5T5I D;  1PYQ A;  3X2P A;  1SMY D;  1KQG A;  3HKZ A;  4KOD A;  2IV2 X;  1H0H A;  4FG4 A;  1VC3 B;  2KI8 A;  3ML1 A;  2HCZ X;  5DYI A;  4CS0 A;  4DMR A;  2AE0 X;  3M3G A;  2NVX A;  1N10 A;  5T5M D;  3PLX B;  1K83 A;  2WAQ A;  1OGY A;  1YLE A;  1BW3 A;  1PPY A;  2PNW A;  5C18 A;  1WCM A;  1QCS A;  4NOH A;  3D30 A;  1DMS A;  3X2J A;  1CR5 A;  2BH0 A;  2JIO A;  2JIQ A;  1ZYR D;  4KDL A;  5FTM A;  3SUJ A;  1UHE A;  5FTL A;  2G5D A;  4AZD A;  1CZ5 A;  3ENG A;  3CF2 A;  3CZB A;  2JIR A;  1BW4 A;  1WLF A;  4RV0 A;  5FTN A;  3GTL A;  1OA9 A;  2VUM A;  4FER A;  2JA5 A;  1Q16 A;  1IW7 D;  2KQA A;  5C1B A;  3SUL A;  2E7Z A;  4JP7 A;  1I50 A;  4L48 A;  1YNN D;  5GLF A;  2A6E D;  3FKI A;  1DMR A;  2VPX A;  2WB1 A;  1PQH A;  2VPZ A;  5B6C A;  4GA5 A;  5GLY A;  5EPP A;  1H5N A;  2A6H D;  4KDI A;  3H0G A;  1PYU B;  4QIW A;  1Y1V A;  1E18 A;  4CRY G;  2R93 A;  1TMO A;  1Y5I A;  3X2N A;  2GAE A;  4JCW A;  3X2O A;  1TWC A;  2CW0 D;  3DMR A;  3HU1 A;  1TWF A;  1AA6 A;  4C2M A;  1Y1W A;  1R27 A;  2A69 D;  5H4U A;  2PIC A;  2B63 A;  3GTG A;  4JS7 A;  2YUJ A;  1SIW A;  2BE5 D;  2NVY A;  1FDI A;  4AON B;  2E2I A;  2EEO B;  1R9T A;  3QC8 A;  1ZC1 A;  1S3S A;  2VPY A;  1SFO A;  2NAP A;  5GM9 A;  2O5J D;  3QQ8 A;  1I3Q A;  2C45 A;  1EU1 A;  4KO8 A;  1HD5 A;  1PT0 A; 
#chains in the Genus database with same CATH homology
 2PJJ A;  3X2K A;  2PNW A;  2G6G A;  2PI8 A;  5GLY A;  4JP6 A;  1WC2 A;  3D30 A;  3X2J A;  2BH0 A;  1OA7 A;  3X2L A;  3X2I A;  3X2H A;  3SUJ A;  1L8F A;  4JJO A;  2G5D A;  3X2N A;  2GAE A;  4JCW A;  4ZM7 A;  3SUM A;  3X2O A;  3ENG A;  3CZB A;  3X2M A;  3X2G A;  3SUK A;  4ENG A;  2ENG A;  4AVR A;  5H4U A;  2PIC A;  1BW4 A;  5GLX A;  4JS7 A;  3X2P A;  1OA9 A;  4FER A;  2KQA A;  4FG4 A;  2HCZ X;  3SUL A;  4JP7 A;  2AE0 X;  3M3G A;  4L48 A;  5GM9 A;  1N10 A;  4FG2 A;  1HD5 A;  1BW3 A;  4FFT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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