1BW4A

Three-dimensional structure in solution of barwin, a protein from barley seed
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
125
structure length
125
Chain Sequence
b'EQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords BARWIN, BASIC BARLEY SEED PROTEIN
molecule tags Lectin
source organism Hordeum vulgare
publication title Three-dimensional structure in solution of barwin, a protein from barley seed.
pubmed doi rcsb
total genus 27
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 1992-07-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00967 Barwin Barwin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 1bw4A00
5GM9A 4FERA 2PNWA 5GLYA 2ENGA 2AE0X 4ZM7A 4JP6A 3SUJA 4AVRA 2KQAA 3X2NA 1N10A 3X2PA 3M3GA 4JP7A 1HD5A 3X2HA 1WC2A 5GLXA 3D30A 3X2GA 3X2IA 2G5DA 4JCWA 3ENGA 4JJOA 1OA7A 3X2JA 3X2MA 2HCZX 2BH0A 3SUKA 3X2OA 1L8FA 1OA9A 3SULA 3CZBA 3X2KA 4FFTA 4JS7A 2PJJA 3X2LA 2GAEA 4ENGA 4FG2A 1BW4A 3SUMA 2PICA 1BW3A 5H4UA 2PI8A 2G6GA 4L48A 4FG4A
chains in the Genus database with same CATH superfamily
1E32A 4QIWA 4FERA 1R7RA 2PNWA 5DYIA 3PLXB 1DMRA 1S3SA 1R27A 3GTLA 2KQAA 3X2NA 1N10A 4JP7A 1HD5A 4DMRA 2VPZA 3X2HA 1WC2A 5GLXA 1PT1A 3X2IA 2G5DA 3ENGA 2R93A 2R7ZA 3CQZA 1PQHA 2VPYA 4GA5A 3X2OA 3SUKA 4FFTA 5GLFA 1AW8B 2GAEA 4ENGA 2E7ZA 3TM7B 5DYGA 2JIQA 4AAYA 1PT0A 1BW3A 3GTQA 4L48A 2A6HD 4KO8A 5GLYA 3GTOA 2ENGA 5B6CA 1PYQA 2NVXA 5T5ID 4JP6A 1IW7D 1Y5IA 1G8JA 3H0GA 3DMRA 2VUMA 3QQ7A 1PQFA 3D30A 3QWZA 1YNND 3FKIA 1OA7A 4RV0A 1E5VA 2JIMA 5EPPA 1WCMA 2HCZX 1SIWA 2DMRA 1SFOA 2V3VA 3SULA 1WLFA 3IR6A 3CZBA 4GA6A 5FTNA 1FDIA 2KI8A 2YUJA 4NOHA 2PMZA 4KDLA 2JIRA 1CR5A 4FG2A 2VPXA 2R92A 2PICA 1Q16A 1AA6A 3HU1A 4CRYG 1R9TA 1VC3B 1I50A 1CZ4A 4FG4A 3GTPA 4AYBA 2V45A 2B63A 4KODA 3OUGA 4AONB 1FDOA 1YNJD 1H0HA 1E60A 2YU9A 4ZM7A 1TWGA 3HKZA 4AVRA 1TWCA 3X2PA 3M3GA 2PJHB 3X2GA 1EU1A 1ZYRD 3HU2A 2CW0D 3HU3A 4JJOA 1YLEA 5C18A 2JIPA 2JIOA 2WAQA 2NVYA 2WB1A 1KQGA 1KQFA 2BE5D 4JS7A 2EEOB 4AOKB 1QCSA 2IV2X 3GTGA 3IR5A 3TIWA 1PYUB 5FTMA 3O5AA 1BW4A 4CRZA 1TMOA 5H4UA 2G6GA 2O5JD 1H5NA 1Y1VA 3ML1A 1Y4ZA 3CF2A 1SMYD 1UHEA 2E2HA 1CZ5A 5GM9A 3GTMA 4KLNA 1Y1WA 3GTJA 2JA6A 2AE0X 1TWAA 1PQEA 2NYAA 2VPWA 1G8KA 2A6ED 3QQ8A 3SUJA 4D7ZB 1K83A 2JA7A 2A68D 5FTKA 4C2MA 5T5MD 1TWHA 5FTJA 4AZDA 4JCWA 3X2JA 1TWFA 1DMSA 3X2MA 1PPYA 2Y0SA 1QDNA 5FTLA 2BH0A 2E2IA 1L8FA 1OA9A 3X2KA 3GTKA 2PJJA 3X2LA 3IR7A 2C45A 4KDIA 5C1BA 2A69D 1ZC1A 4CS0A 1E61A 2JA5A 3SUMA 3QC8A 2PI8A 1OGYA 2NAPA 1E18A 1I3QA 1UHDA
chains in the Genus database with same CATH topology
5GM9A 4FERA 2PNWA 5GLYA 2ENGA 2AE0X 4ZM7A 4JP6A 3SUJA 4AVRA 2KQAA 3X2NA 1N10A 3X2PA 3M3GA 4JP7A 1HD5A 3X2HA 1WC2A 5GLXA 3D30A 3X2GA 3X2IA 2G5DA 4JCWA 3ENGA 4JJOA 1OA7A 3X2JA 3X2MA 2HCZX 2BH0A 3SUKA 3X2OA 1L8FA 1OA9A 3SULA 3CZBA 3X2KA 4FFTA 4JS7A 2PJJA 3X2LA 2GAEA 4ENGA 4FG2A 1BW4A 3SUMA 2PICA 1BW3A 5H4UA 2PI8A 2G6GA 4L48A 4FG4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GM9 A;  4FER A;  2PNW A;  5GLY A;  2ENG A;  2AE0 X;  4ZM7 A;  4JP6 A;  3SUJ A;  4AVR A;  2KQA A;  3X2N A;  1N10 A;  3X2P A;  3M3G A;  4JP7 A;  1HD5 A;  3X2H A;  1WC2 A;  5GLX A;  3D30 A;  3X2G A;  3X2I A;  2G5D A;  4JCW A;  3ENG A;  4JJO A;  1OA7 A;  3X2J A;  3X2M A;  2HCZ X;  2BH0 A;  3SUK A;  3X2O A;  1L8F A;  1OA9 A;  3SUL A;  3CZB A;  3X2K A;  4FFT A;  4JS7 A;  2PJJ A;  3X2L A;  2GAE A;  4ENG A;  4FG2 A;  1BW4 A;  3SUM A;  2PIC A;  1BW3 A;  5H4U A;  2PI8 A;  2G6G A;  4L48 A;  4FG4 A; 
#chains in the Genus database with same CATH topology
 1E32 A;  4QIW A;  4FER A;  1R7R A;  2PNW A;  5DYI A;  3PLX B;  1DMR A;  1S3S A;  1R27 A;  3GTL A;  2KQA A;  3X2N A;  1N10 A;  4JP7 A;  1HD5 A;  4DMR A;  2VPZ A;  3X2H A;  1WC2 A;  5GLX A;  1PT1 A;  3X2I A;  2G5D A;  3ENG A;  2R93 A;  2R7Z A;  3CQZ A;  1PQH A;  2VPY A;  4GA5 A;  3X2O A;  3SUK A;  4FFT A;  5GLF A;  1AW8 B;  2GAE A;  4ENG A;  2E7Z A;  3TM7 B;  5DYG A;  2JIQ A;  4AAY A;  1PT0 A;  1BW3 A;  3GTQ A;  4L48 A;  2A6H D;  4KO8 A;  5GLY A;  3GTO A;  2ENG A;  5B6C A;  1PYQ A;  2NVX A;  5T5I D;  4JP6 A;  1IW7 D;  1Y5I A;  1G8J A;  3H0G A;  3DMR A;  2VUM A;  3QQ7 A;  1PQF A;  3D30 A;  3QWZ A;  1YNN D;  3FKI A;  1OA7 A;  4RV0 A;  1E5V A;  2JIM A;  5EPP A;  1WCM A;  2HCZ X;  1SIW A;  2DMR A;  1SFO A;  2V3V A;  3SUL A;  1WLF A;  3IR6 A;  3CZB A;  4GA6 A;  5FTN A;  1FDI A;  2KI8 A;  2YUJ A;  4NOH A;  2PMZ A;  4KDL A;  2JIR A;  1CR5 A;  4FG2 A;  2VPX A;  2R92 A;  2PIC A;  1Q16 A;  1AA6 A;  3HU1 A;  4CRY G;  1R9T A;  1VC3 B;  1I50 A;  1CZ4 A;  4FG4 A;  3GTP A;  4AYB A;  2V45 A;  2B63 A;  4KOD A;  3OUG A;  4AON B;  1FDO A;  1YNJ D;  1H0H A;  1E60 A;  2YU9 A;  4ZM7 A;  1TWG A;  3HKZ A;  4AVR A;  1TWC A;  3X2P A;  3M3G A;  2PJH B;  3X2G A;  1EU1 A;  1ZYR D;  3HU2 A;  2CW0 D;  3HU3 A;  4JJO A;  1YLE A;  5C18 A;  2JIP A;  2JIO A;  2WAQ A;  2NVY A;  2WB1 A;  1KQG A;  1KQF A;  2BE5 D;  4JS7 A;  2EEO B;  4AOK B;  1QCS A;  2IV2 X;  3GTG A;  3IR5 A;  3TIW A;  1PYU B;  5FTM A;  3O5A A;  1BW4 A;  4CRZ A;  1TMO A;  5H4U A;  2G6G A;  2O5J D;  1H5N A;  1Y1V A;  3ML1 A;  1Y4Z A;  3CF2 A;  1SMY D;  1UHE A;  2E2H A;  1CZ5 A;  5GM9 A;  3GTM A;  4KLN A;  1Y1W A;  3GTJ A;  2JA6 A;  2AE0 X;  1TWA A;  1PQE A;  2NYA A;  2VPW A;  1G8K A;  2A6E D;  3QQ8 A;  3SUJ A;  4D7Z B;  1K83 A;  2JA7 A;  2A68 D;  5FTK A;  4C2M A;  5T5M D;  1TWH A;  5FTJ A;  4AZD A;  4JCW A;  3X2J A;  1TWF A;  1DMS A;  3X2M A;  1PPY A;  2Y0S A;  1QDN A;  5FTL A;  2BH0 A;  2E2I A;  1L8F A;  1OA9 A;  3X2K A;  3GTK A;  2PJJ A;  3X2L A;  3IR7 A;  2C45 A;  4KDI A;  5C1B A;  2A69 D;  1ZC1 A;  4CS0 A;  1E61 A;  2JA5 A;  3SUM A;  3QC8 A;  2PI8 A;  1OGY A;  2NAP A;  1E18 A;  1I3Q A;  1UHD A; 
#chains in the Genus database with same CATH homology
 5GM9 A;  4FER A;  2PNW A;  5GLY A;  2ENG A;  2AE0 X;  4ZM7 A;  4JP6 A;  3SUJ A;  4AVR A;  2KQA A;  3X2N A;  1N10 A;  3X2P A;  3M3G A;  4JP7 A;  1HD5 A;  3X2H A;  1WC2 A;  5GLX A;  3D30 A;  3X2G A;  3X2I A;  2G5D A;  4JCW A;  3ENG A;  4JJO A;  1OA7 A;  3X2J A;  3X2M A;  2HCZ X;  2BH0 A;  3SUK A;  3X2O A;  1L8F A;  1OA9 A;  3SUL A;  3CZB A;  3X2K A;  4FFT A;  4JS7 A;  2PJJ A;  3X2L A;  2GAE A;  4ENG A;  4FG2 A;  1BW4 A;  3SUM A;  2PIC A;  1BW3 A;  5H4U A;  2PI8 A;  2G6G A;  4L48 A;  4FG4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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