1BW4A

Three-dimensional structure in solution of barwin, a protein from barley seed
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
125
structure length
125
Chain Sequence
EQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lectin
molecule keywords BARWIN, BASIC BARLEY SEED PROTEIN
publication title Three-dimensional structure in solution of barwin, a protein from barley seed.
pubmed doi rcsb
source organism Hordeum vulgare
total genus 27
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 1992-07-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00967 Barwin Barwin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 1bw4A00
2PI8A 4AVRA 3M3GA 4ZM7A 4JP7A 3X2NA 1N10A 2AE0X 3X2HA 1HD5A 3X2MA 4ENGA 1BW4A 4FERA 3SUMA 1BW3A 3X2LA 4L48A 4FFTA 2PJJA 3X2OA 3SUJA 4FG4A 4JS7A 5GM9A 3X2IA 3X2JA 5GLXA 3X2GA 5H4UA 3D30A 1WC2A 3SUKA 1OA7A 2HCZX 3SULA 4JP6A 2PNWA 1OA9A 2GAEA 5GLYA 2G5DA 2G6GA 3ENGA 2BH0A 3CZBA 4FG2A 4JCWA 3X2PA 3X2KA 2ENGA 4JJOA 2KQAA 2PICA 1L8FA
chains in the Genus database with same CATH superfamily
4AVRA 1KQFA 2AE0X 4C2MA 1EU1A 1BW4A 2A68D 4FERA 3SUMA 3X2LA 1G8KA 4L48A 2A69D 1PQEA 5FTJA 2R92A 1QCSA 2PJJA 3X2OA 5GM9A 5T5ID 3X2JA 2A6ED 4D7ZB 2YU9A 1WLFA 2HCZX 2WB1A 4KODA 5B6CA 1OGYA 1AW8B 2A6HD 3GTLA 3SULA 1AA6A 1E32A 1Y5IA 1QDNA 2B63A 1FDOA 2NVXA 4KDLA 1R27A 1OA9A 4FG2A 1E5VA 1UHEA 2ENGA 4JJOA 3X2KA 4CRYG 2KQAA 1IW7D 3ML1A 3X2GA 4AZDA 1PT0A 3FKIA 1PQHA 2NYAA 1ZC1A 2JA6A 2C45A 4FFTA 1R7RA 4GA6A 1CZ5A 1I3QA 3GTPA 4FG4A 4JS7A 2E2IA 1G8JA 3H0GA 1SFOA 3QC8A 5H4UA 3IR7A 3GTGA 1Y1WA 2YUJA 5DYGA 3SUKA 1OA7A 2E2HA 2DMRA 1YNND 3QQ7A 3TIWA 2Y0SA 3DMRA 2PNWA 1UHDA 2NAPA 3HU1A 3O5AA 2JIPA 3PLXB 5GLYA 1PQFA 1YNJD 3ENGA 1Y4ZA 1WCMA 2R7ZA 3HU3A 2PICA 1L8FA 3OUGA 2BE5D 2PI8A 2VPZA 1E61A 4AAYA 3M3GA 1ZYRD 3IR6A 4JP7A 4ENGA 4ZM7A 5C18A 2JIOA 1TWGA 4GA5A 5FTNA 1TWAA 1BW3A 1VC3B 1DMRA 3GTJA 2KI8A 3QWZA 1H5NA 1Q16A 4KDIA 4AONB 1KQGA 3GTOA 2E7ZA 2EEOB 5GLFA 5EPPA 3CF2A 2CW0D 2WAQA 2R93A 1WC2A 4RV0A 3GTKA 3QQ8A 5FTLA 4CS0A 4DMRA 2G5DA 1FDIA 2G6GA 2BH0A 3CZBA 2O5JD 3HKZA 1S3SA 1YLEA 2IV2X 1CZ4A 2PJHB 2V45A 5C1BA 1R9TA 3X2NA 1N10A 1E18A 2JIMA 1HD5A 3HU2A 3X2MA 3X2HA 1TWFA 2JIRA 4QIWA 4CRZA 2JIQA 1H0HA 1E60A 2NVYA 3SUJA 3IR5A 4NOHA 3X2IA 1TWCA 2JA7A 5GLXA 1SMYD 2PMZA 4KO8A 3CQZA 3GTQA 3D30A 4AOKB 2V3VA 2JA5A 1PYQA 1PPYA 5T5MD 1Y1VA 1PT1A 5FTKA 1TMOA 4JP6A 3GTMA 2VPXA 2VUMA 2VPYA 2GAEA 1TWHA 5DYIA 3TM7B 4JCWA 1PYUB 5FTMA 3X2PA 1DMSA 1K83A 1I50A 1SIWA 4KLNA 1CR5A 2VPWA 4AYBA
chains in the Genus database with same CATH topology
2PI8A 4AVRA 3M3GA 4ZM7A 4JP7A 3X2NA 1N10A 2AE0X 3X2HA 1HD5A 3X2MA 4ENGA 1BW4A 4FERA 3SUMA 1BW3A 3X2LA 4L48A 4FFTA 2PJJA 3X2OA 3SUJA 4FG4A 4JS7A 5GM9A 3X2IA 3X2JA 5GLXA 3X2GA 5H4UA 3D30A 1WC2A 3SUKA 1OA7A 2HCZX 3SULA 4JP6A 2PNWA 1OA9A 2GAEA 5GLYA 2G5DA 2G6GA 3ENGA 2BH0A 3CZBA 4FG2A 4JCWA 3X2PA 3X2KA 2ENGA 4JJOA 2KQAA 2PICA 1L8FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PI8 A;  4AVR A;  3M3G A;  4ZM7 A;  4JP7 A;  3X2N A;  1N10 A;  2AE0 X;  3X2H A;  1HD5 A;  3X2M A;  4ENG A;  1BW4 A;  4FER A;  3SUM A;  1BW3 A;  3X2L A;  4L48 A;  4FFT A;  2PJJ A;  3X2O A;  3SUJ A;  4FG4 A;  4JS7 A;  5GM9 A;  3X2I A;  3X2J A;  5GLX A;  3X2G A;  5H4U A;  3D30 A;  1WC2 A;  3SUK A;  1OA7 A;  2HCZ X;  3SUL A;  4JP6 A;  2PNW A;  1OA9 A;  2GAE A;  5GLY A;  2G5D A;  2G6G A;  3ENG A;  2BH0 A;  3CZB A;  4FG2 A;  4JCW A;  3X2P A;  3X2K A;  2ENG A;  4JJO A;  2KQA A;  2PIC A;  1L8F A; 
#chains in the Genus database with same CATH topology
 4AVR A;  1KQF A;  2AE0 X;  4C2M A;  1EU1 A;  1BW4 A;  2A68 D;  4FER A;  3SUM A;  3X2L A;  1G8K A;  4L48 A;  2A69 D;  1PQE A;  5FTJ A;  2R92 A;  1QCS A;  2PJJ A;  3X2O A;  5GM9 A;  5T5I D;  3X2J A;  2A6E D;  4D7Z B;  2YU9 A;  1WLF A;  2HCZ X;  2WB1 A;  4KOD A;  5B6C A;  1OGY A;  1AW8 B;  2A6H D;  3GTL A;  3SUL A;  1AA6 A;  1E32 A;  1Y5I A;  1QDN A;  2B63 A;  1FDO A;  2NVX A;  4KDL A;  1R27 A;  1OA9 A;  4FG2 A;  1E5V A;  1UHE A;  2ENG A;  4JJO A;  3X2K A;  4CRY G;  2KQA A;  1IW7 D;  3ML1 A;  3X2G A;  4AZD A;  1PT0 A;  3FKI A;  1PQH A;  2NYA A;  1ZC1 A;  2JA6 A;  2C45 A;  4FFT A;  1R7R A;  4GA6 A;  1CZ5 A;  1I3Q A;  3GTP A;  4FG4 A;  4JS7 A;  2E2I A;  1G8J A;  3H0G A;  1SFO A;  3QC8 A;  5H4U A;  3IR7 A;  3GTG A;  1Y1W A;  2YUJ A;  5DYG A;  3SUK A;  1OA7 A;  2E2H A;  2DMR A;  1YNN D;  3QQ7 A;  3TIW A;  2Y0S A;  3DMR A;  2PNW A;  1UHD A;  2NAP A;  3HU1 A;  3O5A A;  2JIP A;  3PLX B;  5GLY A;  1PQF A;  1YNJ D;  3ENG A;  1Y4Z A;  1WCM A;  2R7Z A;  3HU3 A;  2PIC A;  1L8F A;  3OUG A;  2BE5 D;  2PI8 A;  2VPZ A;  1E61 A;  4AAY A;  3M3G A;  1ZYR D;  3IR6 A;  4JP7 A;  4ENG A;  4ZM7 A;  5C18 A;  2JIO A;  1TWG A;  4GA5 A;  5FTN A;  1TWA A;  1BW3 A;  1VC3 B;  1DMR A;  3GTJ A;  2KI8 A;  3QWZ A;  1H5N A;  1Q16 A;  4KDI A;  4AON B;  1KQG A;  3GTO A;  2E7Z A;  2EEO B;  5GLF A;  5EPP A;  3CF2 A;  2CW0 D;  2WAQ A;  2R93 A;  1WC2 A;  4RV0 A;  3GTK A;  3QQ8 A;  5FTL A;  4CS0 A;  4DMR A;  2G5D A;  1FDI A;  2G6G A;  2BH0 A;  3CZB A;  2O5J D;  3HKZ A;  1S3S A;  1YLE A;  2IV2 X;  1CZ4 A;  2PJH B;  2V45 A;  5C1B A;  1R9T A;  3X2N A;  1N10 A;  1E18 A;  2JIM A;  1HD5 A;  3HU2 A;  3X2M A;  3X2H A;  1TWF A;  2JIR A;  4QIW A;  4CRZ A;  2JIQ A;  1H0H A;  1E60 A;  2NVY A;  3SUJ A;  3IR5 A;  4NOH A;  3X2I A;  1TWC A;  2JA7 A;  5GLX A;  1SMY D;  2PMZ A;  4KO8 A;  3CQZ A;  3GTQ A;  3D30 A;  4AOK B;  2V3V A;  2JA5 A;  1PYQ A;  1PPY A;  5T5M D;  1Y1V A;  1PT1 A;  5FTK A;  1TMO A;  4JP6 A;  3GTM A;  2VPX A;  2VUM A;  2VPY A;  2GAE A;  1TWH A;  5DYI A;  3TM7 B;  4JCW A;  1PYU B;  5FTM A;  3X2P A;  1DMS A;  1K83 A;  1I50 A;  1SIW A;  4KLN A;  1CR5 A;  2VPW A;  4AYB A; 
#chains in the Genus database with same CATH homology
 2PI8 A;  4AVR A;  3M3G A;  4ZM7 A;  4JP7 A;  3X2N A;  1N10 A;  2AE0 X;  3X2H A;  1HD5 A;  3X2M A;  4ENG A;  1BW4 A;  4FER A;  3SUM A;  1BW3 A;  3X2L A;  4L48 A;  4FFT A;  2PJJ A;  3X2O A;  3SUJ A;  4FG4 A;  4JS7 A;  5GM9 A;  3X2I A;  3X2J A;  5GLX A;  3X2G A;  5H4U A;  3D30 A;  1WC2 A;  3SUK A;  1OA7 A;  2HCZ X;  3SUL A;  4JP6 A;  2PNW A;  1OA9 A;  2GAE A;  5GLY A;  2G5D A;  2G6G A;  3ENG A;  2BH0 A;  3CZB A;  4FG2 A;  4JCW A;  3X2P A;  3X2K A;  2ENG A;  4JJO A;  2KQA A;  2PIC A;  1L8F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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