1VC3B

Crystal structure of l-aspartate-alpha-decarboxylase
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
95
structure length
95
Chain Sequence
b'VTVDQDLLDAAGILPFEQVDIYDITNGARLTTYALPGERGSGVIGINGAAAHLVKPGDLVILVAYGVFDEEEARNLKPTVVLVDERNRILEVRKG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of L-Aspartate-alpha-Decarboxylase
rcsb
molecule keywords L-Aspartate-alpha-Decarboxylase light chain
source organism Thermus thermophilus
molecule tags Lyase
total genus 20
structure length 95
sequence length 95
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2004-03-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1vc3B00
3QWZA 1KQFA 1R7RA 4C2MA 2DMRA 2JA7A 1UHDA 5C1BA 1IW7D 2VPYA 3DMRA 3IR6A 4GA6A 3GTMA 1E5VA 5DYGA 2YU9A 3QC8A 2R92A 2VUMA 5FTLA 1QDNA 1AA6A 5FTKA 1TWAA 3HU3A 2WAQA 1KQGA 4KODA 1E18A 1WCMA 2VPWA 1TWCA 2E2IA 2B63A 1PQFA 1PT1A 3CF2A 4AYBA 3HU1A 1WLFA 4AZDA 2JA6A 2E2HA 1R27A 1PT0A 1CZ5A 1AW8B 3GTGA 4DMRA 5EPPA 1QCSA 1E32A 3GTOA 1UHEA 1YLEA 3PLXB 5B6CA 4KLNA 1E60A 2V45A 2R7ZA 3ML1A 4QIWA 5DYIA 5T5MD 1TWHA 3O5AA 2JIQA 1H5NA 1Y4ZA 1Y5IA 3GTKA 2NVXA 3IR7A 1I3QA 4AOKB 3CQZA 5FTMA 2NYAA 1FDIA 3HU2A 4KDLA 1CR5A 2JIRA 1TMOA 1DMRA 1PQHA 3OUGA 4CRYG 2VPZA 4KDIA 2E7ZA 1PQEA 2V3VA 2IV2X 4GA5A 1Q16A 4D7ZB 3QQ7A 2NAPA 2JIOA 3TIWA 3GTQA 1DMSA 2PMZA 1OGYA 2JA5A 5T5ID 2EEOB 1PPYA 2JIMA 5FTNA 2NVYA 1TWFA 1R9TA 2C45A 3QQ8A 2R93A 1PYQA 2JIPA 5C18A 1H0HA 4AONB 2KI8A 4AAYA 1VC3B 3IR5A 1E61A 1EU1A 1Y1WA 4CRZA 1S3SA 1SFOA 3H0GA 2VPXA 4CS0A 3GTPA 2PJHB 3FKIA 1K83A 1Y1VA 1G8KA 3HKZA 2Y0SA 4RV0A 4KO8A 1I50A 3GTJA 1G8JA 3TM7B 1TWGA 1FDOA 1PYUB 1CZ4A 1SIWA 2WB1A 5GLFA 5FTJA 3GTLA
chains in the Genus database with same CATH superfamily
3QWZA 1KQFA 1R7RA 4C2MA 2DMRA 2JA7A 3X2HA 1UHDA 5C1BA 1IW7D 2VPYA 3DMRA 4NOHA 3IR6A 4GA6A 2A68D 3GTMA 1E5VA 5DYGA 2YU9A 3QC8A 2R92A 2VUMA 5FTLA 1QDNA 1AA6A 5FTKA 3SUJA 1OA7A 1TWAA 3HU3A 2WAQA 1KQGA 4KODA 1E18A 1WCMA 2VPWA 2YUJA 1TWCA 3X2JA 4ZM7A 1N10A 3SULA 2E2IA 2B63A 1YNJD 1PQFA 1OA9A 2PNWA 1PT1A 3CF2A 4AYBA 3HU1A 1WLFA 4AZDA 2JA6A 1ZC1A 2E2HA 1R27A 4FERA 1PT0A 4JS7A 3SUMA 3X2PA 1CZ5A 1AW8B 5GLYA 2GAEA 3GTGA 2O5JD 4DMRA 5EPPA 1HD5A 2PJJA 1QCSA 4AVRA 1E32A 3GTOA 1UHEA 1YLEA 3PLXB 5B6CA 3X2IA 5GM9A 4KLNA 1SMYD 1E60A 2V45A 2A6ED 2R7ZA 3ML1A 4QIWA 5DYIA 3X2MA 5T5MD 1TWHA 2A6HD 3O5AA 2JIQA 3SUKA 1H5NA 1Y4ZA 1Y5IA 3GTKA 2NVXA 3IR7A 1I3QA 4AOKB 3CQZA 1WC2A 5FTMA 2NYAA 3ENGA 1FDIA 3HU2A 4KDLA 1CR5A 2G5DA 2JIRA 2G6GA 1TMOA 1DMRA 1PQHA 3OUGA 4CRYG 2VPZA 4KDIA 2E7ZA 1PQEA 2ENGA 5FTJA 2V3VA 2IV2X 3X2LA 4GA5A 4L48A 1Q16A 4D7ZB 3QQ7A 2NAPA 2JIOA 2CW0D 3TIWA 3GTQA 3X2GA 1DMSA 3X2NA 4FFTA 4FG2A 2PMZA 1OGYA 2JA5A 5T5ID 5GLXA 2EEOB 1PPYA 2PICA 1BW4A 2JIMA 5FTNA 2NVYA 1TWFA 1R9TA 2C45A 3QQ8A 2R93A 4FG4A 2PI8A 1PYQA 2JIPA 4ENGA 5C18A 1H0HA 2HCZX 4AONB 1ZYRD 2KI8A 5H4UA 4AAYA 1VC3B 3IR5A 1E61A 1EU1A 1Y1WA 4CRZA 2BH0A 1S3SA 1SFOA 3X2OA 3H0GA 2VPXA 4CS0A 3GTPA 3D30A 2PJHB 3FKIA 1K83A 4JP7A 1BW3A 1YNND 1Y1VA 3M3GA 1G8KA 2AE0X 2KQAA 2A69D 3HKZA 2Y0SA 4JCWA 4KO8A 4RV0A 3X2KA 4JP6A 1I50A 3GTJA 3CZBA 1G8JA 3TM7B 1TWGA 1FDOA 1PYUB 1CZ4A 1SIWA 2WB1A 5GLFA 1L8FA 2BE5D 4JJOA 3GTLA
chains in the Genus database with same CATH topology
3QWZA 1KQFA 1R7RA 4C2MA 2DMRA 2JA7A 1UHDA 5C1BA 1IW7D 2VPYA 3DMRA 4NOHA 3IR6A 4GA6A 2A68D 3GTMA 1E5VA 5DYGA 2YU9A 3QC8A 2R92A 2VUMA 5FTLA 1QDNA 1AA6A 5FTKA 1TWAA 3HU3A 2WAQA 1KQGA 4KODA 1E18A 1WCMA 2VPWA 2YUJA 1TWCA 2E2IA 2B63A 1YNJD 1PQFA 2PNWA 1PT1A 3CF2A 4AYBA 3HU1A 1WLFA 4AZDA 2JA6A 1ZC1A 2E2HA 1R27A 1PT0A 1CZ5A 1AW8B 2GAEA 3GTGA 2O5JD 4DMRA 5EPPA 2PJJA 1QCSA 1E32A 3GTOA 1UHEA 1YLEA 3PLXB 5B6CA 4KLNA 1SMYD 1E60A 2V45A 2A6ED 2R7ZA 3ML1A 4QIWA 5DYIA 5T5MD 1TWHA 2A6HD 3O5AA 2JIQA 1H5NA 1Y4ZA 1Y5IA 3GTKA 2NVXA 3IR7A 1I3QA 4AOKB 3CQZA 5FTMA 2NYAA 1FDIA 3HU2A 4KDLA 1CR5A 2G5DA 2JIRA 2G6GA 1TMOA 1DMRA 1PQHA 3OUGA 4CRYG 2VPZA 4KDIA 2E7ZA 1PQEA 2V3VA 2IV2X 4GA5A 1Q16A 4D7ZB 3QQ7A 2NAPA 2JIOA 2CW0D 3TIWA 3GTQA 1DMSA 2PMZA 1OGYA 2JA5A 5T5ID 2EEOB 1PPYA 2PICA 2JIMA 5FTNA 2NVYA 1TWFA 1R9TA 2C45A 3QQ8A 2R93A 2PI8A 1PYQA 2JIPA 5C18A 1H0HA 4AONB 1ZYRD 2KI8A 4AAYA 1VC3B 3IR5A 1E61A 1EU1A 1Y1WA 4CRZA 1S3SA 1SFOA 3H0GA 2VPXA 4CS0A 3GTPA 2PJHB 3FKIA 1K83A 1YNND 1Y1VA 1G8KA 2AE0X 2A69D 3HKZA 2Y0SA 4RV0A 4KO8A 1I50A 3GTJA 3CZBA 1G8JA 3TM7B 1TWGA 1FDOA 1PYUB 1CZ4A 1SIWA 2WB1A 5GLFA 2BE5D 5FTJA 3GTLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QWZ A;  1KQF A;  1R7R A;  4C2M A;  2DMR A;  2JA7 A;  1UHD A;  5C1B A;  1IW7 D;  2VPY A;  3DMR A;  3IR6 A;  4GA6 A;  3GTM A;  1E5V A;  5DYG A;  2YU9 A;  3QC8 A;  2R92 A;  2VUM A;  5FTL A;  1QDN A;  1AA6 A;  5FTK A;  1TWA A;  3HU3 A;  2WAQ A;  1KQG A;  4KOD A;  1E18 A;  1WCM A;  2VPW A;  1TWC A;  2E2I A;  2B63 A;  1PQF A;  1PT1 A;  3CF2 A;  4AYB A;  3HU1 A;  1WLF A;  4AZD A;  2JA6 A;  2E2H A;  1R27 A;  1PT0 A;  1CZ5 A;  1AW8 B;  3GTG A;  4DMR A;  5EPP A;  1QCS A;  1E32 A;  3GTO A;  1UHE A;  1YLE A;  3PLX B;  5B6C A;  4KLN A;  1E60 A;  2V45 A;  2R7Z A;  3ML1 A;  4QIW A;  5DYI A;  5T5M D;  1TWH A;  3O5A A;  2JIQ A;  1H5N A;  1Y4Z A;  1Y5I A;  3GTK A;  2NVX A;  3IR7 A;  1I3Q A;  4AOK B;  3CQZ A;  5FTM A;  2NYA A;  1FDI A;  3HU2 A;  4KDL A;  1CR5 A;  2JIR A;  1TMO A;  1DMR A;  1PQH A;  3OUG A;  4CRY G;  2VPZ A;  4KDI A;  2E7Z A;  1PQE A;  2V3V A;  2IV2 X;  4GA5 A;  1Q16 A;  4D7Z B;  3QQ7 A;  2NAP A;  2JIO A;  3TIW A;  3GTQ A;  1DMS A;  2PMZ A;  1OGY A;  2JA5 A;  5T5I D;  2EEO B;  1PPY A;  2JIM A;  5FTN A;  2NVY A;  1TWF A;  1R9T A;  2C45 A;  3QQ8 A;  2R93 A;  1PYQ A;  2JIP A;  5C18 A;  1H0H A;  4AON B;  2KI8 A;  4AAY A;  1VC3 B;  3IR5 A;  1E61 A;  1EU1 A;  1Y1W A;  4CRZ A;  1S3S A;  1SFO A;  3H0G A;  2VPX A;  4CS0 A;  3GTP A;  2PJH B;  3FKI A;  1K83 A;  1Y1V A;  1G8K A;  3HKZ A;  2Y0S A;  4RV0 A;  4KO8 A;  1I50 A;  3GTJ A;  1G8J A;  3TM7 B;  1TWG A;  1FDO A;  1PYU B;  1CZ4 A;  1SIW A;  2WB1 A;  5GLF A;  5FTJ A;  3GTL A; 
#chains in the Genus database with same CATH topology
 3QWZ A;  1KQF A;  1R7R A;  4C2M A;  2DMR A;  2JA7 A;  3X2H A;  1UHD A;  5C1B A;  1IW7 D;  2VPY A;  3DMR A;  4NOH A;  3IR6 A;  4GA6 A;  2A68 D;  3GTM A;  1E5V A;  5DYG A;  2YU9 A;  3QC8 A;  2R92 A;  2VUM A;  5FTL A;  1QDN A;  1AA6 A;  5FTK A;  3SUJ A;  1OA7 A;  1TWA A;  3HU3 A;  2WAQ A;  1KQG A;  4KOD A;  1E18 A;  1WCM A;  2VPW A;  2YUJ A;  1TWC A;  3X2J A;  4ZM7 A;  1N10 A;  3SUL A;  2E2I A;  2B63 A;  1YNJ D;  1PQF A;  1OA9 A;  2PNW A;  1PT1 A;  3CF2 A;  4AYB A;  3HU1 A;  1WLF A;  4AZD A;  2JA6 A;  1ZC1 A;  2E2H A;  1R27 A;  4FER A;  1PT0 A;  4JS7 A;  3SUM A;  3X2P A;  1CZ5 A;  1AW8 B;  5GLY A;  2GAE A;  3GTG A;  2O5J D;  4DMR A;  5EPP A;  1HD5 A;  2PJJ A;  1QCS A;  4AVR A;  1E32 A;  3GTO A;  1UHE A;  1YLE A;  3PLX B;  5B6C A;  3X2I A;  5GM9 A;  4KLN A;  1SMY D;  1E60 A;  2V45 A;  2A6E D;  2R7Z A;  3ML1 A;  4QIW A;  5DYI A;  3X2M A;  5T5M D;  1TWH A;  2A6H D;  3O5A A;  2JIQ A;  3SUK A;  1H5N A;  1Y4Z A;  1Y5I A;  3GTK A;  2NVX A;  3IR7 A;  1I3Q A;  4AOK B;  3CQZ A;  1WC2 A;  5FTM A;  2NYA A;  3ENG A;  1FDI A;  3HU2 A;  4KDL A;  1CR5 A;  2G5D A;  2JIR A;  2G6G A;  1TMO A;  1DMR A;  1PQH A;  3OUG A;  4CRY G;  2VPZ A;  4KDI A;  2E7Z A;  1PQE A;  2ENG A;  5FTJ A;  2V3V A;  2IV2 X;  3X2L A;  4GA5 A;  4L48 A;  1Q16 A;  4D7Z B;  3QQ7 A;  2NAP A;  2JIO A;  2CW0 D;  3TIW A;  3GTQ A;  3X2G A;  1DMS A;  3X2N A;  4FFT A;  4FG2 A;  2PMZ A;  1OGY A;  2JA5 A;  5T5I D;  5GLX A;  2EEO B;  1PPY A;  2PIC A;  1BW4 A;  2JIM A;  5FTN A;  2NVY A;  1TWF A;  1R9T A;  2C45 A;  3QQ8 A;  2R93 A;  4FG4 A;  2PI8 A;  1PYQ A;  2JIP A;  4ENG A;  5C18 A;  1H0H A;  2HCZ X;  4AON B;  1ZYR D;  2KI8 A;  5H4U A;  4AAY A;  1VC3 B;  3IR5 A;  1E61 A;  1EU1 A;  1Y1W A;  4CRZ A;  2BH0 A;  1S3S A;  1SFO A;  3X2O A;  3H0G A;  2VPX A;  4CS0 A;  3GTP A;  3D30 A;  2PJH B;  3FKI A;  1K83 A;  4JP7 A;  1BW3 A;  1YNN D;  1Y1V A;  3M3G A;  1G8K A;  2AE0 X;  2KQA A;  2A69 D;  3HKZ A;  2Y0S A;  4JCW A;  4KO8 A;  4RV0 A;  3X2K A;  4JP6 A;  1I50 A;  3GTJ A;  3CZB A;  1G8J A;  3TM7 B;  1TWG A;  1FDO A;  1PYU B;  1CZ4 A;  1SIW A;  2WB1 A;  5GLF A;  1L8F A;  2BE5 D;  4JJO A;  3GTL A; 
#chains in the Genus database with same CATH homology
 3QWZ A;  1KQF A;  1R7R A;  4C2M A;  2DMR A;  2JA7 A;  1UHD A;  5C1B A;  1IW7 D;  2VPY A;  3DMR A;  4NOH A;  3IR6 A;  4GA6 A;  2A68 D;  3GTM A;  1E5V A;  5DYG A;  2YU9 A;  3QC8 A;  2R92 A;  2VUM A;  5FTL A;  1QDN A;  1AA6 A;  5FTK A;  1TWA A;  3HU3 A;  2WAQ A;  1KQG A;  4KOD A;  1E18 A;  1WCM A;  2VPW A;  2YUJ A;  1TWC A;  2E2I A;  2B63 A;  1YNJ D;  1PQF A;  2PNW A;  1PT1 A;  3CF2 A;  4AYB A;  3HU1 A;  1WLF A;  4AZD A;  2JA6 A;  1ZC1 A;  2E2H A;  1R27 A;  1PT0 A;  1CZ5 A;  1AW8 B;  2GAE A;  3GTG A;  2O5J D;  4DMR A;  5EPP A;  2PJJ A;  1QCS A;  1E32 A;  3GTO A;  1UHE A;  1YLE A;  3PLX B;  5B6C A;  4KLN A;  1SMY D;  1E60 A;  2V45 A;  2A6E D;  2R7Z A;  3ML1 A;  4QIW A;  5DYI A;  5T5M D;  1TWH A;  2A6H D;  3O5A A;  2JIQ A;  1H5N A;  1Y4Z A;  1Y5I A;  3GTK A;  2NVX A;  3IR7 A;  1I3Q A;  4AOK B;  3CQZ A;  5FTM A;  2NYA A;  1FDI A;  3HU2 A;  4KDL A;  1CR5 A;  2G5D A;  2JIR A;  2G6G A;  1TMO A;  1DMR A;  1PQH A;  3OUG A;  4CRY G;  2VPZ A;  4KDI A;  2E7Z A;  1PQE A;  2V3V A;  2IV2 X;  4GA5 A;  1Q16 A;  4D7Z B;  3QQ7 A;  2NAP A;  2JIO A;  2CW0 D;  3TIW A;  3GTQ A;  1DMS A;  2PMZ A;  1OGY A;  2JA5 A;  5T5I D;  2EEO B;  1PPY A;  2PIC A;  2JIM A;  5FTN A;  2NVY A;  1TWF A;  1R9T A;  2C45 A;  3QQ8 A;  2R93 A;  2PI8 A;  1PYQ A;  2JIP A;  5C18 A;  1H0H A;  4AON B;  1ZYR D;  2KI8 A;  4AAY A;  1VC3 B;  3IR5 A;  1E61 A;  1EU1 A;  1Y1W A;  4CRZ A;  1S3S A;  1SFO A;  3H0G A;  2VPX A;  4CS0 A;  3GTP A;  2PJH B;  3FKI A;  1K83 A;  1YNN D;  1Y1V A;  1G8K A;  2AE0 X;  2A69 D;  3HKZ A;  2Y0S A;  4RV0 A;  4KO8 A;  1I50 A;  3GTJ A;  3CZB A;  1G8J A;  3TM7 B;  1TWG A;  1FDO A;  1PYU B;  1CZ4 A;  1SIW A;  2WB1 A;  5GLF A;  2BE5 D;  5FTJ A;  3GTL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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