1VC3B

Crystal structure of l-aspartate-alpha-decarboxylase
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
95
structure length
95
Chain Sequence
VTVDQDLLDAAGILPFEQVDIYDITNGARLTTYALPGERGSGVIGINGAAAHLVKPGDLVILVAYGVFDEEEARNLKPTVVLVDERNRILEVRKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
source organism Thermus thermophilus
publication title Crystal Structure of L-Aspartate-alpha-Decarboxylase
rcsb
molecule keywords L-Aspartate-alpha-Decarboxylase light chain
total genus 20
structure length 95
sequence length 95
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2004-03-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1vc3B00
1DMRA 1UHDA 1CR5A 4GA5A 4AAYA 2E2IA 1I50A 3GTOA 1TWAA 2VPZA 4AONB 2NAPA 3HKZA 1IW7D 3IR5A 1E32A 2JIOA 1QDNA 1WLFA 2VUMA 4DMRA 1PQHA 4CS0A 1TWFA 2NVYA 2VPYA 1G8JA 4AYBA 3H0GA 1SFOA 1E5VA 3TM7B 1R27A 2JIMA 1TWCA 1SIWA 2PMZA 2E2HA 2R7ZA 1Q16A 1CZ5A 1R9TA 3HU2A 1FDIA 3GTLA 2PJHB 2V3VA 3QQ7A 2DMRA 1E18A 2R93A 5EPPA 2Y0SA 1PQFA 1TMOA 5C18A 2V45A 2JA7A 3HU3A 1KQGA 4RV0A 3GTGA 5DYIA 1AW8B 3O5AA 4AOKB 1E61A 1R7RA 1I3QA 5FTNA 2R92A 3GTMA 3GTKA 1Y5IA 5T5MD 2YU9A 3HU1A 1TWHA 5DYGA 1VC3B 5FTKA 1QCSA 1PYQA 2JA6A 1AA6A 1EU1A 4GA6A 5FTMA 4AZDA 1UHEA 4KDLA 2KI8A 5B6CA 1WCMA 3QQ8A 1KQFA 1OGYA 1FDOA 2WAQA 5FTJA 3IR7A 4KO8A 5FTLA 2IV2X 3DMRA 1Y1WA 1CZ4A 1PYUB 3PLXB 1TWGA 3CF2A 4CRYG 3IR6A 5C1BA 3CQZA 1PT0A 4C2MA 4KLNA 1G8KA 2EEOB 2JA5A 1K83A 1H0HA 5GLFA 4KODA 1E60A 2JIPA 2JIQA 2NYAA 3FKIA 1PT1A 1PQEA 4KDIA 4D7ZB 2B63A 1DMSA 1S3SA 2C45A 4QIWA 2JIRA 3OUGA 5T5ID 1Y4ZA 3GTQA 3ML1A 3GTJA 1YLEA 2NVXA 1H5NA 2VPWA 3QWZA 3QC8A 3TIWA 1PPYA 4CRZA 3GTPA 2E7ZA 2VPXA 2WB1A 1Y1VA
chains in the Genus database with same CATH superfamily
1DMRA 4NOHA 1UHDA 1CR5A 3ENGA 3X2PA 4GA5A 4AAYA 2E2IA 1I50A 3GTOA 3X2IA 1TWAA 2A6HD 4FG4A 2VPZA 4AONB 2NAPA 3HKZA 1IW7D 3IR5A 2G5DA 1E32A 3CZBA 2JIOA 1QDNA 1WLFA 2VUMA 4DMRA 1PQHA 2GAEA 4CS0A 1TWFA 2NVYA 2VPYA 3X2KA 2KQAA 1G8JA 4AVRA 4AYBA 3H0GA 1SFOA 1E5VA 3TM7B 1R27A 1TWCA 1SIWA 2JIMA 3SUMA 2PMZA 2E2HA 2R7ZA 2PI8A 1Q16A 4JP6A 1CZ5A 5GLXA 1R9TA 1BW3A 3HU2A 1FDIA 3GTLA 2PJHB 2PNWA 2V3VA 3QQ7A 4L48A 2DMRA 1E18A 1OA7A 2R93A 5EPPA 2Y0SA 1PQFA 1TMOA 5C18A 2O5JD 2V45A 2JA7A 1WC2A 3HU3A 4FERA 1KQGA 4RV0A 3GTGA 1BW4A 5DYIA 1AW8B 2A68D 3O5AA 3X2GA 3X2JA 4AOKB 1E61A 1R7RA 1I3QA 5FTNA 2R92A 3GTMA 2A69D 3GTKA 1Y5IA 5GLYA 5T5MD 2YU9A 1YNND 3HU1A 4JJOA 2BH0A 1TWHA 1HD5A 1VC3B 5DYGA 5FTKA 1QCSA 1PYQA 1ZC1A 2JA6A 3D30A 4ZM7A 2HCZX 1AA6A 1EU1A 4GA6A 5FTMA 4AZDA 1N10A 1UHEA 4KDLA 2KI8A 5B6CA 1WCMA 3QQ8A 1KQFA 2CW0D 2ENGA 1OGYA 1FDOA 2WAQA 3SULA 3M3GA 5FTJA 3IR7A 4KO8A 4FFTA 4FG2A 5FTLA 2IV2X 3DMRA 1Y1WA 2AE0X 1CZ4A 1PYUB 3PLXB 1TWGA 3CF2A 2G6GA 4CRYG 1SMYD 3IR6A 5C1BA 3CQZA 1PT0A 4C2MA 3SUJA 4KLNA 4JCWA 5GM9A 1G8KA 3SUKA 1L8FA 2EEOB 2JA5A 1K83A 1H0HA 5GLFA 4KODA 2BE5D 3X2LA 1E60A 2JIPA 3X2HA 2JIQA 2PJJA 2NYAA 4ENGA 3FKIA 1PT1A 1OA9A 1PQEA 2PICA 4KDIA 4D7ZB 3X2OA 2B63A 1DMSA 1S3SA 2C45A 4QIWA 2JIRA 3OUGA 2A6ED 5T5ID 1Y4ZA 3GTQA 3ML1A 4JS7A 3GTJA 1YLEA 2NVXA 1H5NA 2VPWA 1ZYRD 3X2MA 3QWZA 3QC8A 4JP7A 1PPYA 1YNJD 3TIWA 2YUJA 5H4UA 4CRZA 3GTPA 2E7ZA 2VPXA 2WB1A 3X2NA 1Y1VA
chains in the Genus database with same CATH topology
1DMRA 4NOHA 1UHDA 1CR5A 4GA5A 4AAYA 2E2IA 1I50A 3GTOA 1TWAA 2A6HD 2VPZA 4AONB 2NAPA 3HKZA 1IW7D 3IR5A 2G5DA 1E32A 3CZBA 2JIOA 1QDNA 1WLFA 2VUMA 4DMRA 1PQHA 2GAEA 4CS0A 1TWFA 2NVYA 2VPYA 1G8JA 4AYBA 3H0GA 1SFOA 1E5VA 3TM7B 1R27A 2JIMA 1TWCA 1SIWA 2PMZA 2E2HA 2R7ZA 2PI8A 1Q16A 1CZ5A 1R9TA 3HU2A 1FDIA 3GTLA 2PJHB 2PNWA 2V3VA 3QQ7A 2DMRA 1E18A 2R93A 5EPPA 2Y0SA 1PQFA 1TMOA 5C18A 2O5JD 2V45A 2JA7A 3HU3A 1KQGA 4RV0A 3GTGA 5DYIA 1AW8B 2A68D 3O5AA 4AOKB 1E61A 1R7RA 1I3QA 5FTNA 2R92A 3GTMA 2A69D 3GTKA 1Y5IA 5T5MD 2YU9A 1YNND 3HU1A 1TWHA 5DYGA 1VC3B 5FTKA 1QCSA 1PYQA 1ZC1A 2JA6A 1AA6A 1EU1A 4GA6A 5FTMA 4AZDA 1UHEA 4KDLA 2KI8A 5B6CA 1WCMA 3QQ8A 1KQFA 2CW0D 1OGYA 1FDOA 2WAQA 5FTJA 3IR7A 4KO8A 5FTLA 2IV2X 3DMRA 1Y1WA 2AE0X 1CZ4A 1PYUB 3PLXB 1TWGA 3CF2A 2G6GA 4CRYG 1SMYD 3IR6A 5C1BA 3CQZA 1PT0A 4C2MA 4KLNA 1G8KA 2EEOB 2JA5A 1K83A 1H0HA 5GLFA 4KODA 2BE5D 1E60A 2JIPA 2JIQA 2PJJA 2NYAA 3FKIA 1PT1A 1PQEA 2PICA 4KDIA 4D7ZB 2B63A 1DMSA 1S3SA 2C45A 4QIWA 2JIRA 3OUGA 2A6ED 5T5ID 1Y4ZA 3GTQA 3ML1A 3GTJA 1YLEA 2NVXA 1H5NA 2VPWA 1ZYRD 3QWZA 3QC8A 3TIWA 1PPYA 1YNJD 2YUJA 4CRZA 3GTPA 2E7ZA 2VPXA 2WB1A 1Y1VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DMR A;  1UHD A;  1CR5 A;  4GA5 A;  4AAY A;  2E2I A;  1I50 A;  3GTO A;  1TWA A;  2VPZ A;  4AON B;  2NAP A;  3HKZ A;  1IW7 D;  3IR5 A;  1E32 A;  2JIO A;  1QDN A;  1WLF A;  2VUM A;  4DMR A;  1PQH A;  4CS0 A;  1TWF A;  2NVY A;  2VPY A;  1G8J A;  4AYB A;  3H0G A;  1SFO A;  1E5V A;  3TM7 B;  1R27 A;  2JIM A;  1TWC A;  1SIW A;  2PMZ A;  2E2H A;  2R7Z A;  1Q16 A;  1CZ5 A;  1R9T A;  3HU2 A;  1FDI A;  3GTL A;  2PJH B;  2V3V A;  3QQ7 A;  2DMR A;  1E18 A;  2R93 A;  5EPP A;  2Y0S A;  1PQF A;  1TMO A;  5C18 A;  2V45 A;  2JA7 A;  3HU3 A;  1KQG A;  4RV0 A;  3GTG A;  5DYI A;  1AW8 B;  3O5A A;  4AOK B;  1E61 A;  1R7R A;  1I3Q A;  5FTN A;  2R92 A;  3GTM A;  3GTK A;  1Y5I A;  5T5M D;  2YU9 A;  3HU1 A;  1TWH A;  5DYG A;  1VC3 B;  5FTK A;  1QCS A;  1PYQ A;  2JA6 A;  1AA6 A;  1EU1 A;  4GA6 A;  5FTM A;  4AZD A;  1UHE A;  4KDL A;  2KI8 A;  5B6C A;  1WCM A;  3QQ8 A;  1KQF A;  1OGY A;  1FDO A;  2WAQ A;  5FTJ A;  3IR7 A;  4KO8 A;  5FTL A;  2IV2 X;  3DMR A;  1Y1W A;  1CZ4 A;  1PYU B;  3PLX B;  1TWG A;  3CF2 A;  4CRY G;  3IR6 A;  5C1B A;  3CQZ A;  1PT0 A;  4C2M A;  4KLN A;  1G8K A;  2EEO B;  2JA5 A;  1K83 A;  1H0H A;  5GLF A;  4KOD A;  1E60 A;  2JIP A;  2JIQ A;  2NYA A;  3FKI A;  1PT1 A;  1PQE A;  4KDI A;  4D7Z B;  2B63 A;  1DMS A;  1S3S A;  2C45 A;  4QIW A;  2JIR A;  3OUG A;  5T5I D;  1Y4Z A;  3GTQ A;  3ML1 A;  3GTJ A;  1YLE A;  2NVX A;  1H5N A;  2VPW A;  3QWZ A;  3QC8 A;  3TIW A;  1PPY A;  4CRZ A;  3GTP A;  2E7Z A;  2VPX A;  2WB1 A;  1Y1V A; 
#chains in the Genus database with same CATH topology
 1DMR A;  4NOH A;  1UHD A;  1CR5 A;  3ENG A;  3X2P A;  4GA5 A;  4AAY A;  2E2I A;  1I50 A;  3GTO A;  3X2I A;  1TWA A;  2A6H D;  4FG4 A;  2VPZ A;  4AON B;  2NAP A;  3HKZ A;  1IW7 D;  3IR5 A;  2G5D A;  1E32 A;  3CZB A;  2JIO A;  1QDN A;  1WLF A;  2VUM A;  4DMR A;  1PQH A;  2GAE A;  4CS0 A;  1TWF A;  2NVY A;  2VPY A;  3X2K A;  2KQA A;  1G8J A;  4AVR A;  4AYB A;  3H0G A;  1SFO A;  1E5V A;  3TM7 B;  1R27 A;  1TWC A;  1SIW A;  2JIM A;  3SUM A;  2PMZ A;  2E2H A;  2R7Z A;  2PI8 A;  1Q16 A;  4JP6 A;  1CZ5 A;  5GLX A;  1R9T A;  1BW3 A;  3HU2 A;  1FDI A;  3GTL A;  2PJH B;  2PNW A;  2V3V A;  3QQ7 A;  4L48 A;  2DMR A;  1E18 A;  1OA7 A;  2R93 A;  5EPP A;  2Y0S A;  1PQF A;  1TMO A;  5C18 A;  2O5J D;  2V45 A;  2JA7 A;  1WC2 A;  3HU3 A;  4FER A;  1KQG A;  4RV0 A;  3GTG A;  1BW4 A;  5DYI A;  1AW8 B;  2A68 D;  3O5A A;  3X2G A;  3X2J A;  4AOK B;  1E61 A;  1R7R A;  1I3Q A;  5FTN A;  2R92 A;  3GTM A;  2A69 D;  3GTK A;  1Y5I A;  5GLY A;  5T5M D;  2YU9 A;  1YNN D;  3HU1 A;  4JJO A;  2BH0 A;  1TWH A;  1HD5 A;  1VC3 B;  5DYG A;  5FTK A;  1QCS A;  1PYQ A;  1ZC1 A;  2JA6 A;  3D30 A;  4ZM7 A;  2HCZ X;  1AA6 A;  1EU1 A;  4GA6 A;  5FTM A;  4AZD A;  1N10 A;  1UHE A;  4KDL A;  2KI8 A;  5B6C A;  1WCM A;  3QQ8 A;  1KQF A;  2CW0 D;  2ENG A;  1OGY A;  1FDO A;  2WAQ A;  3SUL A;  3M3G A;  5FTJ A;  3IR7 A;  4KO8 A;  4FFT A;  4FG2 A;  5FTL A;  2IV2 X;  3DMR A;  1Y1W A;  2AE0 X;  1CZ4 A;  1PYU B;  3PLX B;  1TWG A;  3CF2 A;  2G6G A;  4CRY G;  1SMY D;  3IR6 A;  5C1B A;  3CQZ A;  1PT0 A;  4C2M A;  3SUJ A;  4KLN A;  4JCW A;  5GM9 A;  1G8K A;  3SUK A;  1L8F A;  2EEO B;  2JA5 A;  1K83 A;  1H0H A;  5GLF A;  4KOD A;  2BE5 D;  3X2L A;  1E60 A;  2JIP A;  3X2H A;  2JIQ A;  2PJJ A;  2NYA A;  4ENG A;  3FKI A;  1PT1 A;  1OA9 A;  1PQE A;  2PIC A;  4KDI A;  4D7Z B;  3X2O A;  2B63 A;  1DMS A;  1S3S A;  2C45 A;  4QIW A;  2JIR A;  3OUG A;  2A6E D;  5T5I D;  1Y4Z A;  3GTQ A;  3ML1 A;  4JS7 A;  3GTJ A;  1YLE A;  2NVX A;  1H5N A;  2VPW A;  1ZYR D;  3X2M A;  3QWZ A;  3QC8 A;  4JP7 A;  1PPY A;  1YNJ D;  3TIW A;  2YUJ A;  5H4U A;  4CRZ A;  3GTP A;  2E7Z A;  2VPX A;  2WB1 A;  3X2N A;  1Y1V A; 
#chains in the Genus database with same CATH homology
 1DMR A;  4NOH A;  1UHD A;  1CR5 A;  4GA5 A;  4AAY A;  2E2I A;  1I50 A;  3GTO A;  1TWA A;  2A6H D;  2VPZ A;  4AON B;  2NAP A;  3HKZ A;  1IW7 D;  3IR5 A;  2G5D A;  1E32 A;  3CZB A;  2JIO A;  1QDN A;  1WLF A;  2VUM A;  4DMR A;  1PQH A;  2GAE A;  4CS0 A;  1TWF A;  2NVY A;  2VPY A;  1G8J A;  4AYB A;  3H0G A;  1SFO A;  1E5V A;  3TM7 B;  1R27 A;  2JIM A;  1TWC A;  1SIW A;  2PMZ A;  2E2H A;  2R7Z A;  2PI8 A;  1Q16 A;  1CZ5 A;  1R9T A;  3HU2 A;  1FDI A;  3GTL A;  2PJH B;  2PNW A;  2V3V A;  3QQ7 A;  2DMR A;  1E18 A;  2R93 A;  5EPP A;  2Y0S A;  1PQF A;  1TMO A;  5C18 A;  2O5J D;  2V45 A;  2JA7 A;  3HU3 A;  1KQG A;  4RV0 A;  3GTG A;  5DYI A;  1AW8 B;  2A68 D;  3O5A A;  4AOK B;  1E61 A;  1R7R A;  1I3Q A;  5FTN A;  2R92 A;  3GTM A;  2A69 D;  3GTK A;  1Y5I A;  5T5M D;  2YU9 A;  1YNN D;  3HU1 A;  1TWH A;  5DYG A;  1VC3 B;  5FTK A;  1QCS A;  1PYQ A;  1ZC1 A;  2JA6 A;  1AA6 A;  1EU1 A;  4GA6 A;  5FTM A;  4AZD A;  1UHE A;  4KDL A;  2KI8 A;  5B6C A;  1WCM A;  3QQ8 A;  1KQF A;  2CW0 D;  1OGY A;  1FDO A;  2WAQ A;  5FTJ A;  3IR7 A;  4KO8 A;  5FTL A;  2IV2 X;  3DMR A;  1Y1W A;  2AE0 X;  1CZ4 A;  1PYU B;  3PLX B;  1TWG A;  3CF2 A;  2G6G A;  4CRY G;  1SMY D;  3IR6 A;  5C1B A;  3CQZ A;  1PT0 A;  4C2M A;  4KLN A;  1G8K A;  2EEO B;  2JA5 A;  1K83 A;  1H0H A;  5GLF A;  4KOD A;  2BE5 D;  1E60 A;  2JIP A;  2JIQ A;  2PJJ A;  2NYA A;  3FKI A;  1PT1 A;  1PQE A;  2PIC A;  4KDI A;  4D7Z B;  2B63 A;  1DMS A;  1S3S A;  2C45 A;  4QIW A;  2JIR A;  3OUG A;  2A6E D;  5T5I D;  1Y4Z A;  3GTQ A;  3ML1 A;  3GTJ A;  1YLE A;  2NVX A;  1H5N A;  2VPW A;  1ZYR D;  3QWZ A;  3QC8 A;  3TIW A;  1PPY A;  1YNJ D;  2YUJ A;  4CRZ A;  3GTP A;  2E7Z A;  2VPX A;  2WB1 A;  1Y1V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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