2EEOB

Crystal structure of t.th. hb8 l-aspartate-alpha-decarboxylase complexed with fumarate
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
95
structure length
95
Chain Sequence
VTVDQDLLDAAGILPFEQVDIYDITNGARLTTYALPGERGSGVIGINGAAAHLVKPGDLVILVAYGVFDEEEARNLKPTVVLVDERNRILEVRKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of T.th. HB8 L-Aspartate-alpha-Decarboxylase
rcsb
molecule tags Lyase
source organism Thermus thermophilus
molecule keywords Aspartate 1-decarboxylase
total genus 20
structure length 95
sequence length 95
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2007-02-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 2eeoB00
1PPYA 5T5ID 4RV0A 2E2IA 2R93A 5C18A 2JA6A 1WLFA 3HU1A 1OGYA 4D7ZB 1R7RA 1G8JA 3CF2A 1Y1VA 5DYIA 2VPWA 3HU3A 3PLXB 2JIPA 2V3VA 1YLEA 3IR6A 2NAPA 1R27A 2JIRA 1PQEA 4QIWA 4GA5A 2VPYA 1E18A 1DMRA 5FTNA 4KODA 2WB1A 2VPZA 1FDIA 4AZDA 5B6CA 3GTKA 1E60A 3QWZA 1TMOA 4AOKB 3TIWA 4CRYG 4CS0A 1AA6A 1Y4ZA 1UHEA 1DMSA 5FTLA 1VC3B 3OUGA 4CRZA 3GTLA 1PYQA 1S3SA 3GTMA 2YU9A 1PYUB 2JIMA 1TWHA 1CZ4A 1Y5IA 3DMRA 1PQFA 3FKIA 3ML1A 2B63A 1PQHA 1CZ5A 5FTMA 1KQFA 3GTPA 2V45A 1TWGA 1K83A 2NVXA 1Y1WA 2E7ZA 4GA6A 1R9TA 2Y0SA 2WAQA 1IW7D 2IV2X 5C1BA 4C2MA 5T5MD 2R92A 3GTOA 1I3QA 3IR5A 2PJHB 1E5VA 1CR5A 1FDOA 4KO8A 3GTGA 1I50A 1H0HA 1H5NA 2JA7A 3IR7A 1PT0A 2R7ZA 2VPXA 3TM7B 3HKZA 2E2HA 2KI8A 1E61A 1EU1A 1TWAA 4DMRA 3H0GA 3QQ7A 3O5AA 1E32A 5EPPA 1KQGA 1QCSA 5FTJA 3QQ8A 2NYAA 1TWFA 2JA5A 4AYBA 2JIOA 1AW8B 2DMRA 5FTKA 1UHDA 1G8KA 5DYGA 5GLFA 1QDNA 2C45A 4AAYA 1WCMA 3GTJA 2JIQA 1Q16A 2EEOB 4KDIA 4AONB 1PT1A 2PMZA 2NVYA 2VUMA 3CQZA 4KDLA 3HU2A 3GTQA 1SFOA 3QC8A 4KLNA 1TWCA 1SIWA
chains in the Genus database with same CATH superfamily
1PPYA 5T5ID 4RV0A 5GLXA 2E2IA 2A6HD 2R93A 5C18A 2JA6A 1WLFA 1OA7A 1OGYA 3HU1A 4D7ZB 1R7RA 1G8JA 2A6ED 3CF2A 1Y1VA 5DYIA 2HCZX 2VPWA 3HU3A 3PLXB 2JIPA 2V3VA 1YLEA 3X2KA 3IR6A 2NAPA 1R27A 2JIRA 1PQEA 4FG4A 4QIWA 1N10A 4GA5A 4L48A 1YNND 2VPYA 1E18A 1DMRA 1HD5A 2CW0D 4KODA 5FTNA 2WB1A 2VPZA 3X2LA 1FDIA 3D30A 2G6GA 4AZDA 5B6CA 3GTKA 3ENGA 1E60A 4FFTA 3QWZA 1TMOA 4AOKB 3TIWA 4JP6A 4CRYG 4CS0A 1AA6A 1YNJD 3SULA 1Y4ZA 1UHEA 1BW4A 1DMSA 4NOHA 5FTLA 3X2PA 1VC3B 3OUGA 3SUKA 4JS7A 3X2JA 4JP7A 4CRZA 1SMYD 3GTLA 2A69D 1PYQA 1S3SA 1ZYRD 3GTMA 3SUJA 3X2IA 4AVRA 2YU9A 1PYUB 2KQAA 4FG2A 2JIMA 1TWHA 1CZ4A 1Y5IA 3DMRA 1PQFA 3FKIA 3ML1A 5H4UA 3X2NA 2B63A 1PQHA 1CZ5A 3X2MA 2PICA 3SUMA 5FTMA 1KQFA 3GTPA 2PJJA 2V45A 1TWGA 1K83A 2NVXA 1Y1WA 2E7ZA 4GA6A 1R9TA 2Y0SA 2WAQA 1IW7D 2IV2X 5C1BA 4C2MA 5T5MD 2R92A 3GTOA 2YUJA 3IR5A 1I3QA 2PJHB 1E5VA 1CR5A 1FDOA 4KO8A 3X2GA 3X2HA 3GTGA 1I50A 1H0HA 1H5NA 2A68D 3IR7A 1PT0A 2R7ZA 2JA7A 5GLYA 2VPXA 3TM7B 3HKZA 2E2HA 4FERA 2KI8A 1E61A 1EU1A 1OA9A 4ZM7A 2AE0X 3X2OA 1TWAA 4DMRA 3H0GA 3QQ7A 3O5AA 2ENGA 1E32A 2PI8A 5EPPA 2GAEA 4ENGA 1KQGA 1QCSA 5FTJA 3QQ8A 2NYAA 1TWFA 2JA5A 4AYBA 2JIOA 1AW8B 2DMRA 2O5JD 5FTKA 4JCWA 1UHDA 1G8KA 5DYGA 3M3GA 5GLFA 1QDNA 5GM9A 2C45A 1BW3A 4AAYA 4JJOA 1WCMA 3GTJA 2JIQA 1Q16A 2BE5D 2EEOB 4KDIA 1WC2A 4AONB 2G5DA 1PT1A 2PMZA 2BH0A 2NVYA 2VUMA 3CZBA 3CQZA 1ZC1A 4KDLA 2PNWA 3HU2A 3GTQA 1SFOA 1L8FA 3QC8A 4KLNA 1TWCA 1SIWA
chains in the Genus database with same CATH topology
1PPYA 5T5ID 4RV0A 2E2IA 2A6HD 2R93A 5C18A 2JA6A 1WLFA 3HU1A 1OGYA 4D7ZB 1R7RA 1G8JA 2A6ED 3CF2A 1Y1VA 5DYIA 2VPWA 3HU3A 3PLXB 2JIPA 2V3VA 1YLEA 3IR6A 2NAPA 1R27A 2JIRA 1PQEA 4QIWA 4GA5A 1YNND 2VPYA 1E18A 1DMRA 2CW0D 5FTNA 4KODA 2WB1A 2VPZA 1FDIA 2G6GA 4AZDA 5B6CA 3GTKA 1E60A 3QWZA 1TMOA 4AOKB 3TIWA 4CRYG 4CS0A 1AA6A 1YNJD 1Y4ZA 1UHEA 1DMSA 4NOHA 5FTLA 1VC3B 3OUGA 4CRZA 1SMYD 3GTLA 2A69D 1PYQA 1S3SA 1ZYRD 3GTMA 2YU9A 1PYUB 2JIMA 1TWHA 1CZ4A 1Y5IA 3DMRA 1PQFA 3FKIA 3ML1A 2B63A 1PQHA 1CZ5A 2PICA 5FTMA 1KQFA 3GTPA 2PJJA 2V45A 1TWGA 1K83A 2NVXA 1Y1WA 2E7ZA 4GA6A 1R9TA 2Y0SA 2WAQA 1IW7D 2IV2X 5C1BA 4C2MA 5T5MD 2R92A 3GTOA 2YUJA 3IR5A 1I3QA 2PJHB 1E5VA 1CR5A 1FDOA 4KO8A 3GTGA 1I50A 1H0HA 1H5NA 2A68D 3IR7A 1PT0A 2R7ZA 2JA7A 2VPXA 3TM7B 3HKZA 2E2HA 2KI8A 1E61A 1EU1A 2AE0X 1TWAA 4DMRA 3H0GA 3QQ7A 3O5AA 1E32A 2PI8A 5EPPA 2GAEA 1KQGA 1QCSA 5FTJA 3QQ8A 2NYAA 1TWFA 2JA5A 4AYBA 2JIOA 1AW8B 2DMRA 2O5JD 5FTKA 1UHDA 1G8KA 5DYGA 5GLFA 1QDNA 2C45A 4AAYA 1WCMA 3GTJA 2JIQA 1Q16A 2BE5D 2EEOB 4KDIA 4AONB 2G5DA 1PT1A 2PMZA 2NVYA 2VUMA 3CZBA 3CQZA 1ZC1A 4KDLA 2PNWA 3HU2A 3GTQA 1SFOA 3QC8A 4KLNA 1TWCA 1SIWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PPY A;  5T5I D;  4RV0 A;  2E2I A;  2R93 A;  5C18 A;  2JA6 A;  1WLF A;  3HU1 A;  1OGY A;  4D7Z B;  1R7R A;  1G8J A;  3CF2 A;  1Y1V A;  5DYI A;  2VPW A;  3HU3 A;  3PLX B;  2JIP A;  2V3V A;  1YLE A;  3IR6 A;  2NAP A;  1R27 A;  2JIR A;  1PQE A;  4QIW A;  4GA5 A;  2VPY A;  1E18 A;  1DMR A;  5FTN A;  4KOD A;  2WB1 A;  2VPZ A;  1FDI A;  4AZD A;  5B6C A;  3GTK A;  1E60 A;  3QWZ A;  1TMO A;  4AOK B;  3TIW A;  4CRY G;  4CS0 A;  1AA6 A;  1Y4Z A;  1UHE A;  1DMS A;  5FTL A;  1VC3 B;  3OUG A;  4CRZ A;  3GTL A;  1PYQ A;  1S3S A;  3GTM A;  2YU9 A;  1PYU B;  2JIM A;  1TWH A;  1CZ4 A;  1Y5I A;  3DMR A;  1PQF A;  3FKI A;  3ML1 A;  2B63 A;  1PQH A;  1CZ5 A;  5FTM A;  1KQF A;  3GTP A;  2V45 A;  1TWG A;  1K83 A;  2NVX A;  1Y1W A;  2E7Z A;  4GA6 A;  1R9T A;  2Y0S A;  2WAQ A;  1IW7 D;  2IV2 X;  5C1B A;  4C2M A;  5T5M D;  2R92 A;  3GTO A;  1I3Q A;  3IR5 A;  2PJH B;  1E5V A;  1CR5 A;  1FDO A;  4KO8 A;  3GTG A;  1I50 A;  1H0H A;  1H5N A;  2JA7 A;  3IR7 A;  1PT0 A;  2R7Z A;  2VPX A;  3TM7 B;  3HKZ A;  2E2H A;  2KI8 A;  1E61 A;  1EU1 A;  1TWA A;  4DMR A;  3H0G A;  3QQ7 A;  3O5A A;  1E32 A;  5EPP A;  1KQG A;  1QCS A;  5FTJ A;  3QQ8 A;  2NYA A;  1TWF A;  2JA5 A;  4AYB A;  2JIO A;  1AW8 B;  2DMR A;  5FTK A;  1UHD A;  1G8K A;  5DYG A;  5GLF A;  1QDN A;  2C45 A;  4AAY A;  1WCM A;  3GTJ A;  2JIQ A;  1Q16 A;  2EEO B;  4KDI A;  4AON B;  1PT1 A;  2PMZ A;  2NVY A;  2VUM A;  3CQZ A;  4KDL A;  3HU2 A;  3GTQ A;  1SFO A;  3QC8 A;  4KLN A;  1TWC A;  1SIW A; 
#chains in the Genus database with same CATH topology
 1PPY A;  5T5I D;  4RV0 A;  5GLX A;  2E2I A;  2A6H D;  2R93 A;  5C18 A;  2JA6 A;  1WLF A;  1OA7 A;  1OGY A;  3HU1 A;  4D7Z B;  1R7R A;  1G8J A;  2A6E D;  3CF2 A;  1Y1V A;  5DYI A;  2HCZ X;  2VPW A;  3HU3 A;  3PLX B;  2JIP A;  2V3V A;  1YLE A;  3X2K A;  3IR6 A;  2NAP A;  1R27 A;  2JIR A;  1PQE A;  4FG4 A;  4QIW A;  1N10 A;  4GA5 A;  4L48 A;  1YNN D;  2VPY A;  1E18 A;  1DMR A;  1HD5 A;  2CW0 D;  4KOD A;  5FTN A;  2WB1 A;  2VPZ A;  3X2L A;  1FDI A;  3D30 A;  2G6G A;  4AZD A;  5B6C A;  3GTK A;  3ENG A;  1E60 A;  4FFT A;  3QWZ A;  1TMO A;  4AOK B;  3TIW A;  4JP6 A;  4CRY G;  4CS0 A;  1AA6 A;  1YNJ D;  3SUL A;  1Y4Z A;  1UHE A;  1BW4 A;  1DMS A;  4NOH A;  5FTL A;  3X2P A;  1VC3 B;  3OUG A;  3SUK A;  4JS7 A;  3X2J A;  4JP7 A;  4CRZ A;  1SMY D;  3GTL A;  2A69 D;  1PYQ A;  1S3S A;  1ZYR D;  3GTM A;  3SUJ A;  3X2I A;  4AVR A;  2YU9 A;  1PYU B;  2KQA A;  4FG2 A;  2JIM A;  1TWH A;  1CZ4 A;  1Y5I A;  3DMR A;  1PQF A;  3FKI A;  3ML1 A;  5H4U A;  3X2N A;  2B63 A;  1PQH A;  1CZ5 A;  3X2M A;  2PIC A;  3SUM A;  5FTM A;  1KQF A;  3GTP A;  2PJJ A;  2V45 A;  1TWG A;  1K83 A;  2NVX A;  1Y1W A;  2E7Z A;  4GA6 A;  1R9T A;  2Y0S A;  2WAQ A;  1IW7 D;  2IV2 X;  5C1B A;  4C2M A;  5T5M D;  2R92 A;  3GTO A;  2YUJ A;  3IR5 A;  1I3Q A;  2PJH B;  1E5V A;  1CR5 A;  1FDO A;  4KO8 A;  3X2G A;  3X2H A;  3GTG A;  1I50 A;  1H0H A;  1H5N A;  2A68 D;  3IR7 A;  1PT0 A;  2R7Z A;  2JA7 A;  5GLY A;  2VPX A;  3TM7 B;  3HKZ A;  2E2H A;  4FER A;  2KI8 A;  1E61 A;  1EU1 A;  1OA9 A;  4ZM7 A;  2AE0 X;  3X2O A;  1TWA A;  4DMR A;  3H0G A;  3QQ7 A;  3O5A A;  2ENG A;  1E32 A;  2PI8 A;  5EPP A;  2GAE A;  4ENG A;  1KQG A;  1QCS A;  5FTJ A;  3QQ8 A;  2NYA A;  1TWF A;  2JA5 A;  4AYB A;  2JIO A;  1AW8 B;  2DMR A;  2O5J D;  5FTK A;  4JCW A;  1UHD A;  1G8K A;  5DYG A;  3M3G A;  5GLF A;  1QDN A;  5GM9 A;  2C45 A;  1BW3 A;  4AAY A;  4JJO A;  1WCM A;  3GTJ A;  2JIQ A;  1Q16 A;  2BE5 D;  2EEO B;  4KDI A;  1WC2 A;  4AON B;  2G5D A;  1PT1 A;  2PMZ A;  2BH0 A;  2NVY A;  2VUM A;  3CZB A;  3CQZ A;  1ZC1 A;  4KDL A;  2PNW A;  3HU2 A;  3GTQ A;  1SFO A;  1L8F A;  3QC8 A;  4KLN A;  1TWC A;  1SIW A; 
#chains in the Genus database with same CATH homology
 1PPY A;  5T5I D;  4RV0 A;  2E2I A;  2A6H D;  2R93 A;  5C18 A;  2JA6 A;  1WLF A;  3HU1 A;  1OGY A;  4D7Z B;  1R7R A;  1G8J A;  2A6E D;  3CF2 A;  1Y1V A;  5DYI A;  2VPW A;  3HU3 A;  3PLX B;  2JIP A;  2V3V A;  1YLE A;  3IR6 A;  2NAP A;  1R27 A;  2JIR A;  1PQE A;  4QIW A;  4GA5 A;  1YNN D;  2VPY A;  1E18 A;  1DMR A;  2CW0 D;  5FTN A;  4KOD A;  2WB1 A;  2VPZ A;  1FDI A;  2G6G A;  4AZD A;  5B6C A;  3GTK A;  1E60 A;  3QWZ A;  1TMO A;  4AOK B;  3TIW A;  4CRY G;  4CS0 A;  1AA6 A;  1YNJ D;  1Y4Z A;  1UHE A;  1DMS A;  4NOH A;  5FTL A;  1VC3 B;  3OUG A;  4CRZ A;  1SMY D;  3GTL A;  2A69 D;  1PYQ A;  1S3S A;  1ZYR D;  3GTM A;  2YU9 A;  1PYU B;  2JIM A;  1TWH A;  1CZ4 A;  1Y5I A;  3DMR A;  1PQF A;  3FKI A;  3ML1 A;  2B63 A;  1PQH A;  1CZ5 A;  2PIC A;  5FTM A;  1KQF A;  3GTP A;  2PJJ A;  2V45 A;  1TWG A;  1K83 A;  2NVX A;  1Y1W A;  2E7Z A;  4GA6 A;  1R9T A;  2Y0S A;  2WAQ A;  1IW7 D;  2IV2 X;  5C1B A;  4C2M A;  5T5M D;  2R92 A;  3GTO A;  2YUJ A;  3IR5 A;  1I3Q A;  2PJH B;  1E5V A;  1CR5 A;  1FDO A;  4KO8 A;  3GTG A;  1I50 A;  1H0H A;  1H5N A;  2A68 D;  3IR7 A;  1PT0 A;  2R7Z A;  2JA7 A;  2VPX A;  3TM7 B;  3HKZ A;  2E2H A;  2KI8 A;  1E61 A;  1EU1 A;  2AE0 X;  1TWA A;  4DMR A;  3H0G A;  3QQ7 A;  3O5A A;  1E32 A;  2PI8 A;  5EPP A;  2GAE A;  1KQG A;  1QCS A;  5FTJ A;  3QQ8 A;  2NYA A;  1TWF A;  2JA5 A;  4AYB A;  2JIO A;  1AW8 B;  2DMR A;  2O5J D;  5FTK A;  1UHD A;  1G8K A;  5DYG A;  5GLF A;  1QDN A;  2C45 A;  4AAY A;  1WCM A;  3GTJ A;  2JIQ A;  1Q16 A;  2BE5 D;  2EEO B;  4KDI A;  4AON B;  2G5D A;  1PT1 A;  2PMZ A;  2NVY A;  2VUM A;  3CZB A;  3CQZ A;  1ZC1 A;  4KDL A;  2PNW A;  3HU2 A;  3GTQ A;  1SFO A;  3QC8 A;  4KLN A;  1TWC A;  1SIW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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