1PT0A

Unprocessed pyruvoyl dependent aspartate decarboxylase with an alanine insertion at position 26
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
117
structure length
117
Chain Sequence
SMIRTMLQGKLHRVKVTHADLHYEGSACAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Aspartate 1-decarboxylase
publication title Structural constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
source organism Escherichia coli
total genus 36
structure length 117
sequence length 117
chains with identical sequence B
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-06-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1pt0A00
3O5AA 4C2MA 5DYGA 1K83A 4KDLA 1DMRA 3GTKA 4KLNA 2KI8A 2V45A 4CRYG 4GA5A 2JIPA 2Y0SA 1TWGA 1E5VA 1VC3B 3QC8A 1PQHA 4KODA 3IR5A 1R27A 2R93A 2VUMA 1OGYA 1CZ5A 1EU1A 3TM7B 1PT1A 1TMOA 1AW8B 5C18A 1S3SA 3CQZA 1KQFA 3GTPA 1H5NA 5T5ID 2C45A 4AOKB 4AYBA 5FTKA 3GTLA 2R92A 2PJHB 3IR7A 4AAYA 3QQ8A 3OUGA 5FTJA 1I3QA 1WLFA 2E2IA 2E7ZA 3ML1A 1UHEA 3HU1A 2IV2X 1CZ4A 2E2HA 1FDOA 3QWZA 5FTMA 2JA6A 1WCMA 4AZDA 4CS0A 1FDIA 2VPYA 2JIMA 2NVXA 1TWFA 4AONB 2YU9A 1G8KA 1PPYA 5C1BA 1QCSA 3HKZA 3TIWA 3GTGA 3CF2A 2EEOB 1UHDA 1Y1VA 2NYAA 1PT0A 5FTLA 3GTJA 2WB1A 1TWAA 2PMZA 4RV0A 3HU3A 1E61A 3H0GA 1YLEA 1I50A 2VPXA 1PYUB 1Y5IA 1CR5A 1AA6A 1KQGA 3GTQA 2JIRA 2NVYA 3FKIA 5GLFA 2JA5A 4QIWA 1SFOA 1TWHA 2VPZA 1E18A 2DMRA 1Y4ZA 1IW7D 2JIQA 1PYQA 1QDNA 1DMSA 4CRZA 3QQ7A 4DMRA 1Q16A 2JA7A 1R9TA 1PQEA 4D7ZB 4GA6A 1E60A 3GTOA 1G8JA 2R7ZA 1R7RA 5B6CA 5T5MD 2B63A 1SIWA 2WAQA 3PLXB 5DYIA 2VPWA 3IR6A 2JIOA 2V3VA 3DMRA 5FTNA 1Y1WA 1TWCA 4KO8A 1E32A 2NAPA 3HU2A 3GTMA 4KDIA 5EPPA 1H0HA 1PQFA
chains in the Genus database with same CATH superfamily
3O5AA 4C2MA 5DYGA 1K83A 4KDLA 2A6HD 1DMRA 4JP7A 3GTKA 4KLNA 2KI8A 4FERA 2V45A 4CRYG 4GA5A 2JIPA 4NOHA 2Y0SA 1N10A 1TWGA 1YNND 4JS7A 3X2IA 1E5VA 1VC3B 3QC8A 1HD5A 1PQHA 1L8FA 2PICA 4KODA 3IR5A 1R27A 2R93A 3SUJA 2VUMA 1OGYA 1CZ5A 1EU1A 4L48A 3TM7B 1PT1A 2HCZX 3ENGA 1TMOA 1AW8B 3CZBA 2PJJA 5C18A 1S3SA 3CQZA 1KQFA 3GTPA 1H5NA 5T5ID 1ZC1A 2C45A 2PNWA 4JP6A 4AOKB 4AYBA 1BW3A 5FTKA 3GTLA 2BE5D 2PJHB 3IR7A 5GLYA 3QQ8A 3OUGA 5FTJA 4AAYA 1I3QA 1WLFA 2E2IA 2CW0D 2E7ZA 3X2NA 3ML1A 1UHEA 4AVRA 3HU1A 2IV2X 1YNJD 3X2OA 5EPPA 1CZ4A 1OA9A 2E2HA 3X2KA 1FDOA 3QWZA 1BW4A 4FFTA 5FTMA 2JA6A 1WC2A 1WCMA 4AZDA 1SMYD 4CS0A 2R92A 1FDIA 2VPYA 2JIMA 2NVXA 1TWFA 4AONB 2YU9A 1G8KA 4JCWA 1PPYA 5C1BA 1QCSA 3HKZA 3TIWA 2G6GA 3GTGA 3SULA 2YUJA 3CF2A 2EEOB 1UHDA 1Y1VA 2NYAA 4ENGA 1PT0A 5FTLA 3GTJA 2WB1A 1TWAA 2PI8A 2PMZA 4RV0A 5GLXA 3HU3A 1E61A 2O5JD 3H0GA 1YLEA 1I50A 3X2JA 2VPXA 1PYUB 1Y5IA 1CR5A 1AA6A 3X2PA 1KQGA 3GTQA 2JIRA 2NVYA 4ZM7A 3FKIA 5GLFA 2JA5A 4QIWA 4FG4A 1SFOA 1TWHA 2VPZA 3SUMA 1E18A 2DMRA 1Y4ZA 3SUKA 3D30A 1IW7D 1PYQA 2JIQA 2ENGA 4FG2A 1QDNA 1DMSA 5H4UA 4CRZA 3QQ7A 2A6ED 5GM9A 4JJOA 4DMRA 1Q16A 2JA7A 1R9TA 3M3GA 1PQEA 2BH0A 4GA6A 1E60A 3X2LA 4D7ZB 1G8JA 3GTOA 2R7ZA 1R7RA 2KQAA 5B6CA 5T5MD 2G5DA 1SIWA 2WAQA 3PLXB 5DYIA 3X2GA 3X2MA 2VPWA 2B63A 3IR6A 2JIOA 2V3VA 3DMRA 5FTNA 1Y1WA 1TWCA 4KO8A 1E32A 2AE0X 2A68D 3X2HA 2GAEA 1OA7A 2NAPA 3HU2A 3GTMA 4KDIA 2A69D 1ZYRD 1H0HA 1PQFA
chains in the Genus database with same CATH topology
3O5AA 4C2MA 5DYGA 1K83A 4KDLA 2A6HD 1DMRA 3GTKA 4KLNA 2KI8A 2V45A 4CRYG 4GA5A 2JIPA 4NOHA 2Y0SA 1TWGA 1YNND 1E5VA 1VC3B 3QC8A 1PQHA 2PICA 4KODA 3IR5A 1R27A 2R93A 2VUMA 1OGYA 1CZ5A 1EU1A 3TM7B 1PT1A 1TMOA 1AW8B 3CZBA 2PJJA 5C18A 1S3SA 3CQZA 1KQFA 3GTPA 1H5NA 5T5ID 1ZC1A 2C45A 2PNWA 4AOKB 4AYBA 5FTKA 3GTLA 2BE5D 2PJHB 3IR7A 4AAYA 3QQ8A 3OUGA 5FTJA 1I3QA 2R92A 1WLFA 2E2IA 2CW0D 2E7ZA 3ML1A 1UHEA 3HU1A 2IV2X 1YNJD 5EPPA 1CZ4A 2E2HA 1FDOA 3QWZA 5FTMA 2JA6A 1WCMA 4AZDA 1SMYD 4CS0A 1FDIA 2VPYA 2JIMA 2NVXA 1TWFA 4AONB 2YU9A 1G8KA 1PPYA 5C1BA 1QCSA 3HKZA 3TIWA 2G6GA 3GTGA 2YUJA 3CF2A 2EEOB 1UHDA 1Y1VA 2NYAA 1PT0A 5FTLA 3GTJA 2WB1A 1TWAA 2PI8A 2PMZA 4RV0A 3HU3A 1E61A 2O5JD 3H0GA 1YLEA 1I50A 2VPXA 1PYUB 1Y5IA 1CR5A 1AA6A 1KQGA 3GTQA 2JIRA 2NVYA 3FKIA 5GLFA 2JA5A 4QIWA 1SFOA 1TWHA 2VPZA 1E18A 2DMRA 1Y4ZA 1IW7D 2JIQA 1PYQA 1QDNA 1DMSA 4CRZA 3QQ7A 2A6ED 4DMRA 1Q16A 2JA7A 1R9TA 1PQEA 4D7ZB 4GA6A 1E60A 3GTOA 1G8JA 2R7ZA 1R7RA 5B6CA 5T5MD 2G5DA 1SIWA 2WAQA 3PLXB 5DYIA 2B63A 2VPWA 3IR6A 2JIOA 2V3VA 3DMRA 5FTNA 1Y1WA 1TWCA 4KO8A 1E32A 2AE0X 2A68D 2GAEA 2NAPA 3HU2A 3GTMA 4KDIA 2A69D 1ZYRD 1H0HA 1PQFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3O5A A;  4C2M A;  5DYG A;  1K83 A;  4KDL A;  1DMR A;  3GTK A;  4KLN A;  2KI8 A;  2V45 A;  4CRY G;  4GA5 A;  2JIP A;  2Y0S A;  1TWG A;  1E5V A;  1VC3 B;  3QC8 A;  1PQH A;  4KOD A;  3IR5 A;  1R27 A;  2R93 A;  2VUM A;  1OGY A;  1CZ5 A;  1EU1 A;  3TM7 B;  1PT1 A;  1TMO A;  1AW8 B;  5C18 A;  1S3S A;  3CQZ A;  1KQF A;  3GTP A;  1H5N A;  5T5I D;  2C45 A;  4AOK B;  4AYB A;  5FTK A;  3GTL A;  2R92 A;  2PJH B;  3IR7 A;  4AAY A;  3QQ8 A;  3OUG A;  5FTJ A;  1I3Q A;  1WLF A;  2E2I A;  2E7Z A;  3ML1 A;  1UHE A;  3HU1 A;  2IV2 X;  1CZ4 A;  2E2H A;  1FDO A;  3QWZ A;  5FTM A;  2JA6 A;  1WCM A;  4AZD A;  4CS0 A;  1FDI A;  2VPY A;  2JIM A;  2NVX A;  1TWF A;  4AON B;  2YU9 A;  1G8K A;  1PPY A;  5C1B A;  1QCS A;  3HKZ A;  3TIW A;  3GTG A;  3CF2 A;  2EEO B;  1UHD A;  1Y1V A;  2NYA A;  1PT0 A;  5FTL A;  3GTJ A;  2WB1 A;  1TWA A;  2PMZ A;  4RV0 A;  3HU3 A;  1E61 A;  3H0G A;  1YLE A;  1I50 A;  2VPX A;  1PYU B;  1Y5I A;  1CR5 A;  1AA6 A;  1KQG A;  3GTQ A;  2JIR A;  2NVY A;  3FKI A;  5GLF A;  2JA5 A;  4QIW A;  1SFO A;  1TWH A;  2VPZ A;  1E18 A;  2DMR A;  1Y4Z A;  1IW7 D;  2JIQ A;  1PYQ A;  1QDN A;  1DMS A;  4CRZ A;  3QQ7 A;  4DMR A;  1Q16 A;  2JA7 A;  1R9T A;  1PQE A;  4D7Z B;  4GA6 A;  1E60 A;  3GTO A;  1G8J A;  2R7Z A;  1R7R A;  5B6C A;  5T5M D;  2B63 A;  1SIW A;  2WAQ A;  3PLX B;  5DYI A;  2VPW A;  3IR6 A;  2JIO A;  2V3V A;  3DMR A;  5FTN A;  1Y1W A;  1TWC A;  4KO8 A;  1E32 A;  2NAP A;  3HU2 A;  3GTM A;  4KDI A;  5EPP A;  1H0H A;  1PQF A; 
#chains in the Genus database with same CATH topology
 3O5A A;  4C2M A;  5DYG A;  1K83 A;  4KDL A;  2A6H D;  1DMR A;  4JP7 A;  3GTK A;  4KLN A;  2KI8 A;  4FER A;  2V45 A;  4CRY G;  4GA5 A;  2JIP A;  4NOH A;  2Y0S A;  1N10 A;  1TWG A;  1YNN D;  4JS7 A;  3X2I A;  1E5V A;  1VC3 B;  3QC8 A;  1HD5 A;  1PQH A;  1L8F A;  2PIC A;  4KOD A;  3IR5 A;  1R27 A;  2R93 A;  3SUJ A;  2VUM A;  1OGY A;  1CZ5 A;  1EU1 A;  4L48 A;  3TM7 B;  1PT1 A;  2HCZ X;  3ENG A;  1TMO A;  1AW8 B;  3CZB A;  2PJJ A;  5C18 A;  1S3S A;  3CQZ A;  1KQF A;  3GTP A;  1H5N A;  5T5I D;  1ZC1 A;  2C45 A;  2PNW A;  4JP6 A;  4AOK B;  4AYB A;  1BW3 A;  5FTK A;  3GTL A;  2BE5 D;  2PJH B;  3IR7 A;  5GLY A;  3QQ8 A;  3OUG A;  5FTJ A;  4AAY A;  1I3Q A;  1WLF A;  2E2I A;  2CW0 D;  2E7Z A;  3X2N A;  3ML1 A;  1UHE A;  4AVR A;  3HU1 A;  2IV2 X;  1YNJ D;  3X2O A;  5EPP A;  1CZ4 A;  1OA9 A;  2E2H A;  3X2K A;  1FDO A;  3QWZ A;  1BW4 A;  4FFT A;  5FTM A;  2JA6 A;  1WC2 A;  1WCM A;  4AZD A;  1SMY D;  4CS0 A;  2R92 A;  1FDI A;  2VPY A;  2JIM A;  2NVX A;  1TWF A;  4AON B;  2YU9 A;  1G8K A;  4JCW A;  1PPY A;  5C1B A;  1QCS A;  3HKZ A;  3TIW A;  2G6G A;  3GTG A;  3SUL A;  2YUJ A;  3CF2 A;  2EEO B;  1UHD A;  1Y1V A;  2NYA A;  4ENG A;  1PT0 A;  5FTL A;  3GTJ A;  2WB1 A;  1TWA A;  2PI8 A;  2PMZ A;  4RV0 A;  5GLX A;  3HU3 A;  1E61 A;  2O5J D;  3H0G A;  1YLE A;  1I50 A;  3X2J A;  2VPX A;  1PYU B;  1Y5I A;  1CR5 A;  1AA6 A;  3X2P A;  1KQG A;  3GTQ A;  2JIR A;  2NVY A;  4ZM7 A;  3FKI A;  5GLF A;  2JA5 A;  4QIW A;  4FG4 A;  1SFO A;  1TWH A;  2VPZ A;  3SUM A;  1E18 A;  2DMR A;  1Y4Z A;  3SUK A;  3D30 A;  1IW7 D;  1PYQ A;  2JIQ A;  2ENG A;  4FG2 A;  1QDN A;  1DMS A;  5H4U A;  4CRZ A;  3QQ7 A;  2A6E D;  5GM9 A;  4JJO A;  4DMR A;  1Q16 A;  2JA7 A;  1R9T A;  3M3G A;  1PQE A;  2BH0 A;  4GA6 A;  1E60 A;  3X2L A;  4D7Z B;  1G8J A;  3GTO A;  2R7Z A;  1R7R A;  2KQA A;  5B6C A;  5T5M D;  2G5D A;  1SIW A;  2WAQ A;  3PLX B;  5DYI A;  3X2G A;  3X2M A;  2VPW A;  2B63 A;  3IR6 A;  2JIO A;  2V3V A;  3DMR A;  5FTN A;  1Y1W A;  1TWC A;  4KO8 A;  1E32 A;  2AE0 X;  2A68 D;  3X2H A;  2GAE A;  1OA7 A;  2NAP A;  3HU2 A;  3GTM A;  4KDI A;  2A69 D;  1ZYR D;  1H0H A;  1PQF A; 
#chains in the Genus database with same CATH homology
 3O5A A;  4C2M A;  5DYG A;  1K83 A;  4KDL A;  2A6H D;  1DMR A;  3GTK A;  4KLN A;  2KI8 A;  2V45 A;  4CRY G;  4GA5 A;  2JIP A;  4NOH A;  2Y0S A;  1TWG A;  1YNN D;  1E5V A;  1VC3 B;  3QC8 A;  1PQH A;  2PIC A;  4KOD A;  3IR5 A;  1R27 A;  2R93 A;  2VUM A;  1OGY A;  1CZ5 A;  1EU1 A;  3TM7 B;  1PT1 A;  1TMO A;  1AW8 B;  3CZB A;  2PJJ A;  5C18 A;  1S3S A;  3CQZ A;  1KQF A;  3GTP A;  1H5N A;  5T5I D;  1ZC1 A;  2C45 A;  2PNW A;  4AOK B;  4AYB A;  5FTK A;  3GTL A;  2BE5 D;  2PJH B;  3IR7 A;  4AAY A;  3QQ8 A;  3OUG A;  5FTJ A;  1I3Q A;  2R92 A;  1WLF A;  2E2I A;  2CW0 D;  2E7Z A;  3ML1 A;  1UHE A;  3HU1 A;  2IV2 X;  1YNJ D;  5EPP A;  1CZ4 A;  2E2H A;  1FDO A;  3QWZ A;  5FTM A;  2JA6 A;  1WCM A;  4AZD A;  1SMY D;  4CS0 A;  1FDI A;  2VPY A;  2JIM A;  2NVX A;  1TWF A;  4AON B;  2YU9 A;  1G8K A;  1PPY A;  5C1B A;  1QCS A;  3HKZ A;  3TIW A;  2G6G A;  3GTG A;  2YUJ A;  3CF2 A;  2EEO B;  1UHD A;  1Y1V A;  2NYA A;  1PT0 A;  5FTL A;  3GTJ A;  2WB1 A;  1TWA A;  2PI8 A;  2PMZ A;  4RV0 A;  3HU3 A;  1E61 A;  2O5J D;  3H0G A;  1YLE A;  1I50 A;  2VPX A;  1PYU B;  1Y5I A;  1CR5 A;  1AA6 A;  1KQG A;  3GTQ A;  2JIR A;  2NVY A;  3FKI A;  5GLF A;  2JA5 A;  4QIW A;  1SFO A;  1TWH A;  2VPZ A;  1E18 A;  2DMR A;  1Y4Z A;  1IW7 D;  2JIQ A;  1PYQ A;  1QDN A;  1DMS A;  4CRZ A;  3QQ7 A;  2A6E D;  4DMR A;  1Q16 A;  2JA7 A;  1R9T A;  1PQE A;  4D7Z B;  4GA6 A;  1E60 A;  3GTO A;  1G8J A;  2R7Z A;  1R7R A;  5B6C A;  5T5M D;  2G5D A;  1SIW A;  2WAQ A;  3PLX B;  5DYI A;  2B63 A;  2VPW A;  3IR6 A;  2JIO A;  2V3V A;  3DMR A;  5FTN A;  1Y1W A;  1TWC A;  4KO8 A;  1E32 A;  2AE0 X;  2A68 D;  2GAE A;  2NAP A;  3HU2 A;  3GTM A;  4KDI A;  2A69 D;  1ZYR D;  1H0H A;  1PQF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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