1PT0A

Unprocessed pyruvoyl dependent aspartate decarboxylase with an alanine insertion at position 26
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
117
structure length
117
Chain Sequence
SMIRTMLQGKLHRVKVTHADLHYEGSACAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Aspartate 1-decarboxylase
publication title Structural constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
source organism Escherichia coli
molecule tags Lyase
total genus 36
structure length 117
sequence length 117
chains with identical sequence B
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-06-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1pt0A00
3CQZA 3TM7B 2IV2X 3GTLA 2JA5A 5FTLA 3HU3A 3HKZA 1KQFA 3GTMA 2YU9A 4RV0A 3IR5A 4GA6A 4AZDA 5DYIA 2WAQA 3OUGA 5GLFA 2VUMA 1TMOA 1Y4ZA 3O5AA 3GTGA 2NYAA 1OGYA 1PPYA 1PQFA 1I50A 1G8KA 2R93A 1K83A 1H5NA 1PQHA 2C45A 1QDNA 4CRYG 1E32A 2R92A 3GTPA 2JA6A 3H0GA 4KO8A 1FDOA 3HU1A 1EU1A 1TWGA 1PYQA 2VPWA 4KDLA 1E5VA 1H0HA 2PJHB 1R27A 3GTOA 2VPZA 1PYUB 2NAPA 5C1BA 3GTQA 1G8JA 2JIQA 5C18A 1CZ4A 1I3QA 4AAYA 5FTMA 2JIOA 4KDIA 2WB1A 2VPXA 4KLNA 1R9TA 1S3SA 1AW8B 5FTNA 3GTKA 1SIWA 4AOKB 1E18A 3HU2A 4DMRA 1QCSA 2JIPA 1PT1A 1DMSA 1TWCA 2DMRA 1KQGA 2JIMA 1YLEA 4AYBA 1UHDA 2EEOB 2V45A 1Y1VA 1WLFA 5EPPA 1CR5A 1Q16A 3FKIA 1PT0A 3QQ7A 2E2HA 4C2MA 2E7ZA 2VPYA 1AA6A 5FTJA 1R7RA 3QQ8A 4KODA 1DMRA 3QC8A 2KI8A 1SFOA 3ML1A 4CRZA 5DYGA 2V3VA 4GA5A 1UHEA 1TWHA 1TWAA 2NVYA 2E2IA 1E61A 1FDIA 2R7ZA 3IR7A 1PQEA 2B63A 2PMZA 1E60A 2NVXA 1WCMA 4AONB 1Y5IA 4QIWA 5FTKA 3CF2A 3DMRA 1TWFA 3GTJA 3IR6A 1IW7D 4D7ZB 5T5MD 3PLXB 5B6CA 1CZ5A 5T5ID 2JIRA 1VC3B 2JA7A 2Y0SA 4CS0A 3QWZA 3TIWA 1Y1WA
chains in the Genus database with same CATH superfamily
4JJOA 3CQZA 3TM7B 2IV2X 3GTLA 2JA5A 5FTLA 3X2PA 3HU3A 3HKZA 1KQFA 3GTMA 3M3GA 2YU9A 4RV0A 3IR5A 4GA6A 3X2JA 4AZDA 4JS7A 5DYIA 2WAQA 2YUJA 3OUGA 5GLFA 2VUMA 1OA7A 1TMOA 1Y4ZA 3O5AA 3GTGA 2NYAA 1OGYA 1PPYA 1PQFA 1I50A 1G8KA 2R93A 5GLXA 1K83A 1H5NA 1PQHA 1SMYD 2C45A 1QDNA 2PJJA 1E32A 5H4UA 4CRYG 2R92A 3GTPA 2JA6A 4AVRA 2AE0X 3D30A 4ENGA 3H0GA 4ZM7A 4KO8A 1FDOA 3HU1A 1EU1A 1TWGA 4FFTA 1PYQA 2VPWA 4KDLA 2G5DA 2A68D 1E5VA 1H0HA 2PJHB 1R27A 3X2IA 3GTOA 3SULA 2VPZA 1PYUB 2NAPA 2PI8A 5C1BA 3GTQA 1OA9A 1G8JA 2JIQA 5C18A 1CZ4A 1I3QA 5GM9A 4AAYA 1WC2A 4JP6A 2KQAA 4FG4A 5FTMA 4JP7A 2JIOA 4KDIA 2WB1A 1L8FA 2VPXA 1ZYRD 4KLNA 2G6GA 1R9TA 1BW3A 1S3SA 3X2MA 1AW8B 5FTNA 3GTKA 1SIWA 4AOKB 1E18A 3X2GA 3HU2A 3SUKA 4DMRA 2PNWA 1QCSA 2JIPA 2A69D 1PT1A 1DMSA 1TWCA 2DMRA 2ENGA 1KQGA 2JIMA 1YLEA 3X2LA 4AYBA 1UHDA 2EEOB 2V45A 1Y1VA 1WLFA 5EPPA 3X2OA 1CR5A 1Q16A 2A6ED 3X2NA 3SUJA 2O5JD 3FKIA 1PT0A 3QQ7A 2HCZX 1ZC1A 2E2HA 4C2MA 2E7ZA 2VPYA 1AA6A 5FTJA 1R7RA 3QQ8A 4KODA 5GLYA 1DMRA 3QC8A 2KI8A 1YNND 4NOHA 1SFOA 3ML1A 2CW0D 4CRZA 5DYGA 2V3VA 4GA5A 1UHEA 1TWHA 1TWAA 2NVYA 1BW4A 2E2IA 4JCWA 1E61A 1FDIA 3ENGA 2R7ZA 3X2KA 1N10A 3IR7A 2PICA 3SUMA 1PQEA 4L48A 2B63A 2PMZA 1E60A 2NVXA 1WCMA 4AONB 1Y5IA 4QIWA 5FTKA 3X2HA 3CF2A 3DMRA 2GAEA 1TWFA 3GTJA 3IR6A 1IW7D 4D7ZB 5T5MD 3PLXB 5B6CA 1CZ5A 5T5ID 2JIRA 1VC3B 4FERA 1HD5A 1YNJD 2A6HD 2JA7A 2Y0SA 4FG2A 4CS0A 3QWZA 2BH0A 3TIWA 1Y1WA 3CZBA 2BE5D
chains in the Genus database with same CATH topology
3CQZA 3TM7B 2IV2X 3GTLA 2JA5A 5FTLA 3HU3A 3HKZA 1KQFA 3GTMA 2YU9A 4RV0A 3IR5A 4GA6A 4AZDA 5DYIA 2WAQA 2YUJA 3OUGA 5GLFA 2VUMA 1TMOA 1Y4ZA 3O5AA 3GTGA 2NYAA 1OGYA 1PPYA 1PQFA 1I50A 1G8KA 2R93A 1K83A 1H5NA 1PQHA 1SMYD 2C45A 1QDNA 2PJJA 1E32A 4CRYG 2R92A 3GTPA 2JA6A 2AE0X 3H0GA 4KO8A 1FDOA 3HU1A 1EU1A 1TWGA 1PYQA 2VPWA 4KDLA 2G5DA 2A68D 1E5VA 1H0HA 2PJHB 1R27A 3GTOA 2VPZA 1PYUB 2NAPA 2PI8A 5C1BA 3GTQA 1G8JA 2JIQA 5C18A 1CZ4A 1I3QA 4AAYA 5FTMA 2JIOA 4KDIA 2WB1A 2VPXA 1ZYRD 4KLNA 2G6GA 1R9TA 1S3SA 1AW8B 5FTNA 3GTKA 1SIWA 4AOKB 1E18A 3HU2A 4DMRA 2PNWA 1QCSA 2JIPA 2A69D 1PT1A 1DMSA 1TWCA 2DMRA 1KQGA 2JIMA 1YLEA 4AYBA 1UHDA 2EEOB 2V45A 1Y1VA 1WLFA 5EPPA 1CR5A 1Q16A 2A6ED 2O5JD 3FKIA 1PT0A 3QQ7A 1ZC1A 2E2HA 4C2MA 2E7ZA 2VPYA 1AA6A 5FTJA 1R7RA 3QQ8A 4KODA 1DMRA 3QC8A 2KI8A 1YNND 4NOHA 1SFOA 3ML1A 2CW0D 4CRZA 5DYGA 2V3VA 4GA5A 1UHEA 1TWHA 1TWAA 2NVYA 2E2IA 1E61A 1FDIA 2R7ZA 3IR7A 2PICA 1PQEA 2B63A 2PMZA 1E60A 2NVXA 1WCMA 4AONB 1Y5IA 4QIWA 5FTKA 3CF2A 3DMRA 2GAEA 1TWFA 3GTJA 3IR6A 1IW7D 4D7ZB 5T5MD 3PLXB 5B6CA 1CZ5A 5T5ID 2JIRA 1VC3B 1YNJD 2A6HD 2JA7A 2Y0SA 4CS0A 3QWZA 3TIWA 1Y1WA 3CZBA 2BE5D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CQZ A;  3TM7 B;  2IV2 X;  3GTL A;  2JA5 A;  5FTL A;  3HU3 A;  3HKZ A;  1KQF A;  3GTM A;  2YU9 A;  4RV0 A;  3IR5 A;  4GA6 A;  4AZD A;  5DYI A;  2WAQ A;  3OUG A;  5GLF A;  2VUM A;  1TMO A;  1Y4Z A;  3O5A A;  3GTG A;  2NYA A;  1OGY A;  1PPY A;  1PQF A;  1I50 A;  1G8K A;  2R93 A;  1K83 A;  1H5N A;  1PQH A;  2C45 A;  1QDN A;  4CRY G;  1E32 A;  2R92 A;  3GTP A;  2JA6 A;  3H0G A;  4KO8 A;  1FDO A;  3HU1 A;  1EU1 A;  1TWG A;  1PYQ A;  2VPW A;  4KDL A;  1E5V A;  1H0H A;  2PJH B;  1R27 A;  3GTO A;  2VPZ A;  1PYU B;  2NAP A;  5C1B A;  3GTQ A;  1G8J A;  2JIQ A;  5C18 A;  1CZ4 A;  1I3Q A;  4AAY A;  5FTM A;  2JIO A;  4KDI A;  2WB1 A;  2VPX A;  4KLN A;  1R9T A;  1S3S A;  1AW8 B;  5FTN A;  3GTK A;  1SIW A;  4AOK B;  1E18 A;  3HU2 A;  4DMR A;  1QCS A;  2JIP A;  1PT1 A;  1DMS A;  1TWC A;  2DMR A;  1KQG A;  2JIM A;  1YLE A;  4AYB A;  1UHD A;  2EEO B;  2V45 A;  1Y1V A;  1WLF A;  5EPP A;  1CR5 A;  1Q16 A;  3FKI A;  1PT0 A;  3QQ7 A;  2E2H A;  4C2M A;  2E7Z A;  2VPY A;  1AA6 A;  5FTJ A;  1R7R A;  3QQ8 A;  4KOD A;  1DMR A;  3QC8 A;  2KI8 A;  1SFO A;  3ML1 A;  4CRZ A;  5DYG A;  2V3V A;  4GA5 A;  1UHE A;  1TWH A;  1TWA A;  2NVY A;  2E2I A;  1E61 A;  1FDI A;  2R7Z A;  3IR7 A;  1PQE A;  2B63 A;  2PMZ A;  1E60 A;  2NVX A;  1WCM A;  4AON B;  1Y5I A;  4QIW A;  5FTK A;  3CF2 A;  3DMR A;  1TWF A;  3GTJ A;  3IR6 A;  1IW7 D;  4D7Z B;  5T5M D;  3PLX B;  5B6C A;  1CZ5 A;  5T5I D;  2JIR A;  1VC3 B;  2JA7 A;  2Y0S A;  4CS0 A;  3QWZ A;  3TIW A;  1Y1W A; 
#chains in the Genus database with same CATH topology
 4JJO A;  3CQZ A;  3TM7 B;  2IV2 X;  3GTL A;  2JA5 A;  5FTL A;  3X2P A;  3HU3 A;  3HKZ A;  1KQF A;  3GTM A;  3M3G A;  2YU9 A;  4RV0 A;  3IR5 A;  4GA6 A;  3X2J A;  4AZD A;  4JS7 A;  5DYI A;  2WAQ A;  2YUJ A;  3OUG A;  5GLF A;  2VUM A;  1OA7 A;  1TMO A;  1Y4Z A;  3O5A A;  3GTG A;  2NYA A;  1OGY A;  1PPY A;  1PQF A;  1I50 A;  1G8K A;  2R93 A;  5GLX A;  1K83 A;  1H5N A;  1PQH A;  1SMY D;  2C45 A;  1QDN A;  2PJJ A;  1E32 A;  5H4U A;  4CRY G;  2R92 A;  3GTP A;  2JA6 A;  4AVR A;  2AE0 X;  3D30 A;  4ENG A;  3H0G A;  4ZM7 A;  4KO8 A;  1FDO A;  3HU1 A;  1EU1 A;  1TWG A;  4FFT A;  1PYQ A;  2VPW A;  4KDL A;  2G5D A;  2A68 D;  1E5V A;  1H0H A;  2PJH B;  1R27 A;  3X2I A;  3GTO A;  3SUL A;  2VPZ A;  1PYU B;  2NAP A;  2PI8 A;  5C1B A;  3GTQ A;  1OA9 A;  1G8J A;  2JIQ A;  5C18 A;  1CZ4 A;  1I3Q A;  5GM9 A;  4AAY A;  1WC2 A;  4JP6 A;  2KQA A;  4FG4 A;  5FTM A;  4JP7 A;  2JIO A;  4KDI A;  2WB1 A;  1L8F A;  2VPX A;  1ZYR D;  4KLN A;  2G6G A;  1R9T A;  1BW3 A;  1S3S A;  3X2M A;  1AW8 B;  5FTN A;  3GTK A;  1SIW A;  4AOK B;  1E18 A;  3X2G A;  3HU2 A;  3SUK A;  4DMR A;  2PNW A;  1QCS A;  2JIP A;  2A69 D;  1PT1 A;  1DMS A;  1TWC A;  2DMR A;  2ENG A;  1KQG A;  2JIM A;  1YLE A;  3X2L A;  4AYB A;  1UHD A;  2EEO B;  2V45 A;  1Y1V A;  1WLF A;  5EPP A;  3X2O A;  1CR5 A;  1Q16 A;  2A6E D;  3X2N A;  3SUJ A;  2O5J D;  3FKI A;  1PT0 A;  3QQ7 A;  2HCZ X;  1ZC1 A;  2E2H A;  4C2M A;  2E7Z A;  2VPY A;  1AA6 A;  5FTJ A;  1R7R A;  3QQ8 A;  4KOD A;  5GLY A;  1DMR A;  3QC8 A;  2KI8 A;  1YNN D;  4NOH A;  1SFO A;  3ML1 A;  2CW0 D;  4CRZ A;  5DYG A;  2V3V A;  4GA5 A;  1UHE A;  1TWH A;  1TWA A;  2NVY A;  1BW4 A;  2E2I A;  4JCW A;  1E61 A;  1FDI A;  3ENG A;  2R7Z A;  3X2K A;  1N10 A;  3IR7 A;  2PIC A;  3SUM A;  1PQE A;  4L48 A;  2B63 A;  2PMZ A;  1E60 A;  2NVX A;  1WCM A;  4AON B;  1Y5I A;  4QIW A;  5FTK A;  3X2H A;  3CF2 A;  3DMR A;  2GAE A;  1TWF A;  3GTJ A;  3IR6 A;  1IW7 D;  4D7Z B;  5T5M D;  3PLX B;  5B6C A;  1CZ5 A;  5T5I D;  2JIR A;  1VC3 B;  4FER A;  1HD5 A;  1YNJ D;  2A6H D;  2JA7 A;  2Y0S A;  4FG2 A;  4CS0 A;  3QWZ A;  2BH0 A;  3TIW A;  1Y1W A;  3CZB A;  2BE5 D; 
#chains in the Genus database with same CATH homology
 3CQZ A;  3TM7 B;  2IV2 X;  3GTL A;  2JA5 A;  5FTL A;  3HU3 A;  3HKZ A;  1KQF A;  3GTM A;  2YU9 A;  4RV0 A;  3IR5 A;  4GA6 A;  4AZD A;  5DYI A;  2WAQ A;  2YUJ A;  3OUG A;  5GLF A;  2VUM A;  1TMO A;  1Y4Z A;  3O5A A;  3GTG A;  2NYA A;  1OGY A;  1PPY A;  1PQF A;  1I50 A;  1G8K A;  2R93 A;  1K83 A;  1H5N A;  1PQH A;  1SMY D;  2C45 A;  1QDN A;  2PJJ A;  1E32 A;  4CRY G;  2R92 A;  3GTP A;  2JA6 A;  2AE0 X;  3H0G A;  4KO8 A;  1FDO A;  3HU1 A;  1EU1 A;  1TWG A;  1PYQ A;  2VPW A;  4KDL A;  2G5D A;  2A68 D;  1E5V A;  1H0H A;  2PJH B;  1R27 A;  3GTO A;  2VPZ A;  1PYU B;  2NAP A;  2PI8 A;  5C1B A;  3GTQ A;  1G8J A;  2JIQ A;  5C18 A;  1CZ4 A;  1I3Q A;  4AAY A;  5FTM A;  2JIO A;  4KDI A;  2WB1 A;  2VPX A;  1ZYR D;  4KLN A;  2G6G A;  1R9T A;  1S3S A;  1AW8 B;  5FTN A;  3GTK A;  1SIW A;  4AOK B;  1E18 A;  3HU2 A;  4DMR A;  2PNW A;  1QCS A;  2JIP A;  2A69 D;  1PT1 A;  1DMS A;  1TWC A;  2DMR A;  1KQG A;  2JIM A;  1YLE A;  4AYB A;  1UHD A;  2EEO B;  2V45 A;  1Y1V A;  1WLF A;  5EPP A;  1CR5 A;  1Q16 A;  2A6E D;  2O5J D;  3FKI A;  1PT0 A;  3QQ7 A;  1ZC1 A;  2E2H A;  4C2M A;  2E7Z A;  2VPY A;  1AA6 A;  5FTJ A;  1R7R A;  3QQ8 A;  4KOD A;  1DMR A;  3QC8 A;  2KI8 A;  1YNN D;  4NOH A;  1SFO A;  3ML1 A;  2CW0 D;  4CRZ A;  5DYG A;  2V3V A;  4GA5 A;  1UHE A;  1TWH A;  1TWA A;  2NVY A;  2E2I A;  1E61 A;  1FDI A;  2R7Z A;  3IR7 A;  2PIC A;  1PQE A;  2B63 A;  2PMZ A;  1E60 A;  2NVX A;  1WCM A;  4AON B;  1Y5I A;  4QIW A;  5FTK A;  3CF2 A;  3DMR A;  2GAE A;  1TWF A;  3GTJ A;  3IR6 A;  1IW7 D;  4D7Z B;  5T5M D;  3PLX B;  5B6C A;  1CZ5 A;  5T5I D;  2JIR A;  1VC3 B;  1YNJ D;  2A6H D;  2JA7 A;  2Y0S A;  4CS0 A;  3QWZ A;  3TIW A;  1Y1W A;  3CZB A;  2BE5 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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