1PT0A

Unprocessed pyruvoyl dependent aspartate decarboxylase with an alanine insertion at position 26
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
117
structure length
117
Chain Sequence
SMIRTMLQGKLHRVKVTHADLHYEGSACAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
source organism Escherichia coli
publication title Structural constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
molecule keywords Aspartate 1-decarboxylase
total genus 36
structure length 117
sequence length 117
chains with identical sequence B
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-06-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1pt0A00
3IR5A 4KLNA 3QWZA 2B63A 1Y1WA 1E60A 1QDNA 2PMZA 2JA7A 1E18A 1PQFA 1E5VA 4AONB 5B6CA 1G8JA 4GA5A 1Q16A 3IR6A 2V3VA 1TWGA 3CF2A 1VC3B 1UHDA 2Y0SA 1SFOA 2R93A 2NYAA 3O5AA 1DMSA 4AAYA 1PYQA 3H0GA 2YU9A 4GA6A 3HKZA 3OUGA 2E7ZA 5C18A 3GTQA 1TMOA 1PT0A 4DMRA 3HU1A 5FTMA 2R7ZA 2KI8A 2VPZA 1KQFA 1K83A 2JIQA 2VPXA 2DMRA 1KQGA 1R7RA 2V45A 1Y1VA 1SIWA 2NVXA 5GLFA 5FTLA 3GTLA 3GTMA 4C2MA 4KDIA 3GTOA 2VUMA 3CQZA 2R92A 5C1BA 2JIRA 1TWFA 1UHEA 1EU1A 2JIOA 3HU3A 2WB1A 1PPYA 1I50A 2JA5A 5EPPA 3QQ7A 1H5NA 4AZDA 2EEOB 5DYIA 2JA6A 2PJHB 5FTNA 5FTKA 1Y4ZA 1CZ4A 1AA6A 2VPYA 3QC8A 1YLEA 1DMRA 1FDIA 4CRYG 4D7ZB 3GTPA 1R9TA 1CR5A 2E2IA 2E2HA 5DYGA 3ML1A 1TWAA 3PLXB 3TIWA 4AYBA 3IR7A 1AW8B 1I3QA 3GTGA 1WLFA 5T5ID 2JIMA 1E61A 1PQEA 2VPWA 3QQ8A 3HU2A 1FDOA 1H0HA 3GTJA 3FKIA 1WCMA 4CS0A 1G8KA 1IW7D 1E32A 2JIPA 1Y5IA 4QIWA 1TWCA 1PYUB 4KODA 4RV0A 2NAPA 5FTJA 4CRZA 2WAQA 1CZ5A 5T5MD 4KO8A 3TM7B 1OGYA 1PQHA 1PT1A 1QCSA 1S3SA 4KDLA 3GTKA 3DMRA 2C45A 2IV2X 1R27A 4AOKB 2NVYA 1TWHA
chains in the Genus database with same CATH superfamily
3IR5A 4KLNA 3QWZA 2YUJA 5GM9A 2B63A 1Y1WA 1E60A 1QDNA 2PMZA 2JA7A 1E18A 1PQFA 2BE5D 1E5VA 1OA7A 2BH0A 4AONB 5B6CA 1G8JA 4GA5A 1Q16A 3CZBA 3IR6A 2V3VA 1YNND 1TWGA 3CF2A 3X2PA 1VC3B 1BW4A 1UHDA 2Y0SA 1SFOA 3X2NA 2R93A 1OA9A 1ZYRD 2NYAA 3O5AA 1DMSA 4AAYA 1PYQA 3H0GA 2YU9A 4GA6A 3HKZA 2CW0D 2E7ZA 3OUGA 5C18A 3GTQA 1TMOA 1PT0A 2A68D 4DMRA 4ZM7A 3HU1A 4FFTA 5FTMA 2R7ZA 2KI8A 2O5JD 2VPZA 1KQFA 3SULA 5GLXA 4NOHA 1K83A 2JIQA 3X2IA 2PICA 2DMRA 2VPXA 4FG4A 1KQGA 3X2KA 1N10A 1R7RA 2V45A 1Y1VA 2G5DA 2AE0X 1SIWA 2NVXA 5GLFA 4ENGA 5FTLA 3X2GA 2KQAA 4JP7A 3GTLA 3GTMA 4C2MA 4KDIA 3X2MA 3GTOA 4JCWA 2GAEA 3CQZA 2HCZX 2R92A 2VUMA 1YNJD 3X2JA 1BW3A 5C1BA 3ENGA 2JIRA 4JS7A 5GLYA 2PJJA 1TWFA 1UHEA 1EU1A 2A69D 2G6GA 2JIOA 2PNWA 3HU3A 2WB1A 1PPYA 4FERA 1I50A 2JA5A 5EPPA 3QQ7A 1H5NA 4L48A 3SUJA 3X2OA 3SUKA 4AZDA 2PI8A 3X2HA 4FG2A 2EEOB 5DYIA 2JA6A 2PJHB 5FTNA 2ENGA 5FTKA 1Y4ZA 1CZ4A 1AA6A 2VPYA 3QC8A 3M3GA 1YLEA 4JP6A 1DMRA 1FDIA 3D30A 4CRYG 4D7ZB 3GTPA 1WC2A 1R9TA 1CR5A 2E2IA 2E2HA 5DYGA 3ML1A 1TWAA 5H4UA 4AVRA 3PLXB 3TIWA 4AYBA 3IR7A 1AW8B 1I3QA 3GTGA 1WLFA 5T5ID 2JIMA 1E61A 2A6HD 1PQEA 2VPWA 3QQ8A 3HU2A 1FDOA 1H0HA 3GTJA 3FKIA 1WCMA 4CS0A 1G8KA 1IW7D 1E32A 1HD5A 2JIPA 1Y5IA 2A6ED 4QIWA 1TWCA 1PYUB 4KODA 4RV0A 2NAPA 5FTJA 4CRZA 2WAQA 1CZ5A 5T5MD 4JJOA 4KO8A 3TM7B 1OGYA 1PQHA 1PT1A 1QCSA 1S3SA 4KDLA 3GTKA 3DMRA 1L8FA 2C45A 2IV2X 1SMYD 3SUMA 1R27A 4AOKB 2NVYA 1TWHA 3X2LA 1ZC1A
chains in the Genus database with same CATH topology
3IR5A 4KLNA 3QWZA 2YUJA 2B63A 1Y1WA 1E60A 1QDNA 2PMZA 2JA7A 1E18A 1PQFA 2BE5D 1E5VA 4AONB 5B6CA 1G8JA 4GA5A 1Q16A 3CZBA 3IR6A 2V3VA 1YNND 1TWGA 3CF2A 1VC3B 1UHDA 2Y0SA 1SFOA 2R93A 1ZYRD 2NYAA 3O5AA 1DMSA 4AAYA 1PYQA 3H0GA 2YU9A 4GA6A 3HKZA 2CW0D 2E7ZA 3OUGA 5C18A 3GTQA 1TMOA 1PT0A 2A68D 4DMRA 3HU1A 5FTMA 2R7ZA 2KI8A 2O5JD 2VPZA 1KQFA 4NOHA 1K83A 2JIQA 2PICA 2DMRA 2VPXA 1KQGA 1R7RA 2V45A 1Y1VA 2G5DA 2AE0X 1SIWA 2NVXA 5GLFA 5FTLA 3GTLA 3GTMA 4C2MA 4KDIA 3GTOA 2VUMA 2GAEA 3CQZA 2R92A 1YNJD 5C1BA 2JIRA 2PJJA 1TWFA 1UHEA 1EU1A 2A69D 2JIOA 2G6GA 2PNWA 3HU3A 2WB1A 1PPYA 1I50A 2JA5A 5EPPA 3QQ7A 1H5NA 4AZDA 2PI8A 2EEOB 5DYIA 2JA6A 2PJHB 5FTNA 5FTKA 1Y4ZA 1CZ4A 1AA6A 2VPYA 3QC8A 1YLEA 1DMRA 1FDIA 4CRYG 4D7ZB 3GTPA 1R9TA 1CR5A 2E2IA 2E2HA 5DYGA 3ML1A 1TWAA 3PLXB 3TIWA 4AYBA 3IR7A 1AW8B 1I3QA 3GTGA 1WLFA 5T5ID 2JIMA 1E61A 2A6HD 1PQEA 2VPWA 3QQ8A 3HU2A 1FDOA 1H0HA 3GTJA 3FKIA 1WCMA 4CS0A 1G8KA 1IW7D 1E32A 2JIPA 1Y5IA 2A6ED 4QIWA 1TWCA 1PYUB 4KODA 4RV0A 2NAPA 5FTJA 4CRZA 2WAQA 1CZ5A 5T5MD 4KO8A 3TM7B 1OGYA 1PQHA 1PT1A 1QCSA 1S3SA 4KDLA 3GTKA 3DMRA 2C45A 2IV2X 1SMYD 1R27A 4AOKB 2NVYA 1TWHA 1ZC1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3IR5 A;  4KLN A;  3QWZ A;  2B63 A;  1Y1W A;  1E60 A;  1QDN A;  2PMZ A;  2JA7 A;  1E18 A;  1PQF A;  1E5V A;  4AON B;  5B6C A;  1G8J A;  4GA5 A;  1Q16 A;  3IR6 A;  2V3V A;  1TWG A;  3CF2 A;  1VC3 B;  1UHD A;  2Y0S A;  1SFO A;  2R93 A;  2NYA A;  3O5A A;  1DMS A;  4AAY A;  1PYQ A;  3H0G A;  2YU9 A;  4GA6 A;  3HKZ A;  3OUG A;  2E7Z A;  5C18 A;  3GTQ A;  1TMO A;  1PT0 A;  4DMR A;  3HU1 A;  5FTM A;  2R7Z A;  2KI8 A;  2VPZ A;  1KQF A;  1K83 A;  2JIQ A;  2VPX A;  2DMR A;  1KQG A;  1R7R A;  2V45 A;  1Y1V A;  1SIW A;  2NVX A;  5GLF A;  5FTL A;  3GTL A;  3GTM A;  4C2M A;  4KDI A;  3GTO A;  2VUM A;  3CQZ A;  2R92 A;  5C1B A;  2JIR A;  1TWF A;  1UHE A;  1EU1 A;  2JIO A;  3HU3 A;  2WB1 A;  1PPY A;  1I50 A;  2JA5 A;  5EPP A;  3QQ7 A;  1H5N A;  4AZD A;  2EEO B;  5DYI A;  2JA6 A;  2PJH B;  5FTN A;  5FTK A;  1Y4Z A;  1CZ4 A;  1AA6 A;  2VPY A;  3QC8 A;  1YLE A;  1DMR A;  1FDI A;  4CRY G;  4D7Z B;  3GTP A;  1R9T A;  1CR5 A;  2E2I A;  2E2H A;  5DYG A;  3ML1 A;  1TWA A;  3PLX B;  3TIW A;  4AYB A;  3IR7 A;  1AW8 B;  1I3Q A;  3GTG A;  1WLF A;  5T5I D;  2JIM A;  1E61 A;  1PQE A;  2VPW A;  3QQ8 A;  3HU2 A;  1FDO A;  1H0H A;  3GTJ A;  3FKI A;  1WCM A;  4CS0 A;  1G8K A;  1IW7 D;  1E32 A;  2JIP A;  1Y5I A;  4QIW A;  1TWC A;  1PYU B;  4KOD A;  4RV0 A;  2NAP A;  5FTJ A;  4CRZ A;  2WAQ A;  1CZ5 A;  5T5M D;  4KO8 A;  3TM7 B;  1OGY A;  1PQH A;  1PT1 A;  1QCS A;  1S3S A;  4KDL A;  3GTK A;  3DMR A;  2C45 A;  2IV2 X;  1R27 A;  4AOK B;  2NVY A;  1TWH A; 
#chains in the Genus database with same CATH topology
 3IR5 A;  4KLN A;  3QWZ A;  2YUJ A;  5GM9 A;  2B63 A;  1Y1W A;  1E60 A;  1QDN A;  2PMZ A;  2JA7 A;  1E18 A;  1PQF A;  2BE5 D;  1E5V A;  1OA7 A;  2BH0 A;  4AON B;  5B6C A;  1G8J A;  4GA5 A;  1Q16 A;  3CZB A;  3IR6 A;  2V3V A;  1YNN D;  1TWG A;  3CF2 A;  3X2P A;  1VC3 B;  1BW4 A;  1UHD A;  2Y0S A;  1SFO A;  3X2N A;  2R93 A;  1OA9 A;  1ZYR D;  2NYA A;  3O5A A;  1DMS A;  4AAY A;  1PYQ A;  3H0G A;  2YU9 A;  4GA6 A;  3HKZ A;  2CW0 D;  2E7Z A;  3OUG A;  5C18 A;  3GTQ A;  1TMO A;  1PT0 A;  2A68 D;  4DMR A;  4ZM7 A;  3HU1 A;  4FFT A;  5FTM A;  2R7Z A;  2KI8 A;  2O5J D;  2VPZ A;  1KQF A;  3SUL A;  5GLX A;  4NOH A;  1K83 A;  2JIQ A;  3X2I A;  2PIC A;  2DMR A;  2VPX A;  4FG4 A;  1KQG A;  3X2K A;  1N10 A;  1R7R A;  2V45 A;  1Y1V A;  2G5D A;  2AE0 X;  1SIW A;  2NVX A;  5GLF A;  4ENG A;  5FTL A;  3X2G A;  2KQA A;  4JP7 A;  3GTL A;  3GTM A;  4C2M A;  4KDI A;  3X2M A;  3GTO A;  4JCW A;  2GAE A;  3CQZ A;  2HCZ X;  2R92 A;  2VUM A;  1YNJ D;  3X2J A;  1BW3 A;  5C1B A;  3ENG A;  2JIR A;  4JS7 A;  5GLY A;  2PJJ A;  1TWF A;  1UHE A;  1EU1 A;  2A69 D;  2G6G A;  2JIO A;  2PNW A;  3HU3 A;  2WB1 A;  1PPY A;  4FER A;  1I50 A;  2JA5 A;  5EPP A;  3QQ7 A;  1H5N A;  4L48 A;  3SUJ A;  3X2O A;  3SUK A;  4AZD A;  2PI8 A;  3X2H A;  4FG2 A;  2EEO B;  5DYI A;  2JA6 A;  2PJH B;  5FTN A;  2ENG A;  5FTK A;  1Y4Z A;  1CZ4 A;  1AA6 A;  2VPY A;  3QC8 A;  3M3G A;  1YLE A;  4JP6 A;  1DMR A;  1FDI A;  3D30 A;  4CRY G;  4D7Z B;  3GTP A;  1WC2 A;  1R9T A;  1CR5 A;  2E2I A;  2E2H A;  5DYG A;  3ML1 A;  1TWA A;  5H4U A;  4AVR A;  3PLX B;  3TIW A;  4AYB A;  3IR7 A;  1AW8 B;  1I3Q A;  3GTG A;  1WLF A;  5T5I D;  2JIM A;  1E61 A;  2A6H D;  1PQE A;  2VPW A;  3QQ8 A;  3HU2 A;  1FDO A;  1H0H A;  3GTJ A;  3FKI A;  1WCM A;  4CS0 A;  1G8K A;  1IW7 D;  1E32 A;  1HD5 A;  2JIP A;  1Y5I A;  2A6E D;  4QIW A;  1TWC A;  1PYU B;  4KOD A;  4RV0 A;  2NAP A;  5FTJ A;  4CRZ A;  2WAQ A;  1CZ5 A;  5T5M D;  4JJO A;  4KO8 A;  3TM7 B;  1OGY A;  1PQH A;  1PT1 A;  1QCS A;  1S3S A;  4KDL A;  3GTK A;  3DMR A;  1L8F A;  2C45 A;  2IV2 X;  1SMY D;  3SUM A;  1R27 A;  4AOK B;  2NVY A;  1TWH A;  3X2L A;  1ZC1 A; 
#chains in the Genus database with same CATH homology
 3IR5 A;  4KLN A;  3QWZ A;  2YUJ A;  2B63 A;  1Y1W A;  1E60 A;  1QDN A;  2PMZ A;  2JA7 A;  1E18 A;  1PQF A;  2BE5 D;  1E5V A;  4AON B;  5B6C A;  1G8J A;  4GA5 A;  1Q16 A;  3CZB A;  3IR6 A;  2V3V A;  1YNN D;  1TWG A;  3CF2 A;  1VC3 B;  1UHD A;  2Y0S A;  1SFO A;  2R93 A;  1ZYR D;  2NYA A;  3O5A A;  1DMS A;  4AAY A;  1PYQ A;  3H0G A;  2YU9 A;  4GA6 A;  3HKZ A;  2CW0 D;  2E7Z A;  3OUG A;  5C18 A;  3GTQ A;  1TMO A;  1PT0 A;  2A68 D;  4DMR A;  3HU1 A;  5FTM A;  2R7Z A;  2KI8 A;  2O5J D;  2VPZ A;  1KQF A;  4NOH A;  1K83 A;  2JIQ A;  2PIC A;  2DMR A;  2VPX A;  1KQG A;  1R7R A;  2V45 A;  1Y1V A;  2G5D A;  2AE0 X;  1SIW A;  2NVX A;  5GLF A;  5FTL A;  3GTL A;  3GTM A;  4C2M A;  4KDI A;  3GTO A;  2VUM A;  2GAE A;  3CQZ A;  2R92 A;  1YNJ D;  5C1B A;  2JIR A;  2PJJ A;  1TWF A;  1UHE A;  1EU1 A;  2A69 D;  2JIO A;  2G6G A;  2PNW A;  3HU3 A;  2WB1 A;  1PPY A;  1I50 A;  2JA5 A;  5EPP A;  3QQ7 A;  1H5N A;  4AZD A;  2PI8 A;  2EEO B;  5DYI A;  2JA6 A;  2PJH B;  5FTN A;  5FTK A;  1Y4Z A;  1CZ4 A;  1AA6 A;  2VPY A;  3QC8 A;  1YLE A;  1DMR A;  1FDI A;  4CRY G;  4D7Z B;  3GTP A;  1R9T A;  1CR5 A;  2E2I A;  2E2H A;  5DYG A;  3ML1 A;  1TWA A;  3PLX B;  3TIW A;  4AYB A;  3IR7 A;  1AW8 B;  1I3Q A;  3GTG A;  1WLF A;  5T5I D;  2JIM A;  1E61 A;  2A6H D;  1PQE A;  2VPW A;  3QQ8 A;  3HU2 A;  1FDO A;  1H0H A;  3GTJ A;  3FKI A;  1WCM A;  4CS0 A;  1G8K A;  1IW7 D;  1E32 A;  2JIP A;  1Y5I A;  2A6E D;  4QIW A;  1TWC A;  1PYU B;  4KOD A;  4RV0 A;  2NAP A;  5FTJ A;  4CRZ A;  2WAQ A;  1CZ5 A;  5T5M D;  4KO8 A;  3TM7 B;  1OGY A;  1PQH A;  1PT1 A;  1QCS A;  1S3S A;  4KDL A;  3GTK A;  3DMR A;  2C45 A;  2IV2 X;  1SMY D;  1R27 A;  4AOK B;  2NVY A;  1TWH A;  1ZC1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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