1PT0A

Unprocessed pyruvoyl dependent aspartate decarboxylase with an alanine insertion at position 26
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
117
structure length
117
Chain Sequence
SMIRTMLQGKLHRVKVTHADLHYEGSACAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
source organism Escherichia coli
molecule tags Lyase
molecule keywords Aspartate 1-decarboxylase
total genus 36
structure length 117
sequence length 117
chains with identical sequence B
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-06-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1pt0A00
3GTQA 1VC3B 2YU9A 1TWHA 4KDIA 1PYUB 3CF2A 5T5MD 1R27A 4GA5A 3GTOA 3QWZA 3FKIA 4CRYG 5B6CA 1DMRA 2R7ZA 2EEOB 1PT0A 4KODA 4C2MA 2VUMA 5DYIA 1E61A 4CS0A 1H5NA 1FDIA 1IW7D 1H0HA 1TMOA 1I50A 5FTJA 1Y5IA 1EU1A 3QC8A 2JIOA 1Y1WA 1CZ5A 3IR6A 1AA6A 1E32A 3TIWA 2R92A 1TWFA 1FDOA 1I3QA 2JA7A 2C45A 3O5AA 2R93A 1PT1A 2VPXA 2B63A 4DMRA 3HU1A 4KO8A 1WLFA 1TWGA 2E7ZA 4GA6A 1OGYA 2NVXA 1R7RA 4AZDA 3HU2A 2V3VA 2VPWA 2VPZA 1PQFA 3GTMA 2IV2X 2NAPA 3OUGA 2V45A 3PLXB 3ML1A 3HKZA 1AW8B 5GLFA 4KDLA 5FTNA 3GTPA 4AONB 2NYAA 3GTKA 2JIRA 1UHDA 1E60A 3GTLA 1SIWA 1KQFA 1KQGA 1YLEA 5FTMA 1R9TA 1UHEA 2NVYA 5DYGA 1Y1VA 4CRZA 1K83A 1DMSA 1S3SA 1E18A 2JA6A 2KI8A 2WAQA 3QQ7A 3QQ8A 2JIMA 1PPYA 3TM7B 1TWCA 4QIWA 1QCSA 1SFOA 3IR5A 1CZ4A 4AOKB 5C1BA 2Y0SA 1G8KA 2VPYA 2E2HA 3H0GA 1E5VA 1WCMA 3GTJA 1PYQA 4AYBA 4AAYA 2WB1A 2PJHB 1PQHA 1QDNA 2E2IA 5FTKA 1Y4ZA 5EPPA 1CR5A 1Q16A 2JIPA 2DMRA 4RV0A 3DMRA 3IR7A 1PQEA 1G8JA 5T5ID 2PMZA 2JIQA 1TWAA 4KLNA 3CQZA 3HU3A 5C18A 3GTGA 2JA5A 4D7ZB 5FTLA
chains in the Genus database with same CATH superfamily
1N10A 3GTQA 1VC3B 2YU9A 1ZC1A 1TWHA 4JCWA 4KDIA 1PYUB 3CF2A 5T5MD 3SULA 1R27A 4GA5A 3GTOA 3QWZA 3FKIA 4CRYG 5B6CA 1DMRA 2R7ZA 2PICA 2ENGA 2EEOB 3SUJA 1PT0A 4KODA 4C2MA 2VUMA 5DYIA 1E61A 4AVRA 4CS0A 1H5NA 4JJOA 1FDIA 1IW7D 1H0HA 1TMOA 1I50A 4ENGA 4FERA 2YUJA 1Y5IA 1EU1A 4JS7A 5FTJA 3QC8A 4D7ZB 2JIOA 1Y1WA 1CZ5A 3IR6A 1AA6A 1E32A 3TIWA 3X2OA 2R92A 1TWFA 1FDOA 3X2NA 1I3QA 2JA7A 2C45A 3O5AA 2R93A 1PT1A 2VPXA 2B63A 4DMRA 3HU1A 4KO8A 3X2KA 1WLFA 1TWGA 2BE5D 2E7ZA 1OGYA 1OA7A 4GA6A 2NVXA 3M3GA 1R7RA 1YNJD 4AZDA 2HCZX 3HU2A 1HD5A 2V3VA 2VPWA 2VPZA 1PQFA 3GTMA 2IV2X 2NAPA 3OUGA 1ZYRD 2GAEA 2V45A 2A68D 3PLXB 4NOHA 3ML1A 3HKZA 1AW8B 5GLFA 4KDLA 5FTNA 3X2JA 3SUMA 3GTPA 4AONB 2NYAA 2O5JD 3GTKA 2JIRA 2KQAA 1UHDA 1SMYD 1E60A 4FG2A 3GTLA 3X2LA 1SIWA 3X2GA 5GLYA 1KQFA 5H4UA 1KQGA 1YLEA 5FTMA 1R9TA 1UHEA 2NVYA 2A6ED 5DYGA 1Y1VA 3CZBA 4CRZA 1K83A 1DMSA 5GM9A 1S3SA 4FFTA 1E18A 4JP7A 2AE0X 2JA6A 2KI8A 2WAQA 3QQ7A 3QQ8A 2PNWA 3X2PA 2JIMA 4JP6A 1PPYA 1L8FA 3TM7B 5GLXA 3X2MA 3X2HA 2CW0D 1TWCA 1OA9A 1QCSA 1WC2A 4QIWA 2PJJA 1SFOA 3IR5A 2G5DA 1CZ4A 4AOKB 5C1BA 2Y0SA 2BH0A 4L48A 1G8KA 2VPYA 2E2HA 3SUKA 3H0GA 3X2IA 1E5VA 1WCMA 3GTJA 1PYQA 1YNND 1BW4A 4AYBA 4AAYA 2WB1A 3ENGA 4ZM7A 2PJHB 1PQHA 1QDNA 2E2IA 5FTKA 1Y4ZA 5EPPA 1CR5A 1Q16A 2JIPA 2A6HD 2A69D 2DMRA 4RV0A 2PI8A 3DMRA 1PQEA 3D30A 3IR7A 1G8JA 5T5ID 2PMZA 2JIQA 1TWAA 1BW3A 4KLNA 3CQZA 3HU3A 5C18A 2G6GA 3GTGA 2JA5A 4FG4A 5FTLA
chains in the Genus database with same CATH topology
3GTQA 1VC3B 2YU9A 1ZC1A 1TWHA 4KDIA 1PYUB 3CF2A 5T5MD 1R27A 4GA5A 3GTOA 3QWZA 3FKIA 4CRYG 5B6CA 1DMRA 2R7ZA 2PICA 2EEOB 1PT0A 4KODA 4C2MA 2VUMA 5DYIA 1E61A 4CS0A 1H5NA 1FDIA 1IW7D 1H0HA 1TMOA 1I50A 2YUJA 1Y5IA 1EU1A 5FTJA 3QC8A 2JIOA 1Y1WA 1CZ5A 3IR6A 1AA6A 1E32A 3TIWA 2R92A 1TWFA 1FDOA 1I3QA 2JA7A 2C45A 3O5AA 2R93A 1PT1A 2VPXA 2B63A 4DMRA 3HU1A 4KO8A 1WLFA 1TWGA 2BE5D 2E7ZA 1OGYA 4GA6A 2NVXA 1R7RA 1YNJD 4AZDA 3HU2A 2V3VA 2VPWA 2VPZA 1PQFA 3GTMA 2IV2X 2NAPA 3OUGA 1ZYRD 2GAEA 2V45A 2A68D 3PLXB 4NOHA 3ML1A 3HKZA 1AW8B 5GLFA 4KDLA 5FTNA 3GTPA 4AONB 2NYAA 2O5JD 3GTKA 2JIRA 1UHDA 1SMYD 1E60A 3GTLA 1SIWA 1KQFA 1KQGA 1YLEA 5FTMA 1R9TA 1UHEA 2NVYA 2A6ED 5DYGA 1Y1VA 3CZBA 4CRZA 1K83A 1DMSA 1S3SA 1E18A 2AE0X 2JA6A 2KI8A 2WAQA 3QQ7A 3QQ8A 2PNWA 2JIMA 1PPYA 3TM7B 2CW0D 1TWCA 4QIWA 1QCSA 1SFOA 2PJJA 3IR5A 2G5DA 1CZ4A 4AOKB 5C1BA 2Y0SA 1G8KA 2VPYA 2E2HA 3H0GA 1E5VA 1WCMA 3GTJA 1PYQA 1YNND 4AYBA 4AAYA 2WB1A 2PJHB 1PQHA 1QDNA 2E2IA 5FTKA 1Y4ZA 5EPPA 1CR5A 1Q16A 2JIPA 2A6HD 2A69D 2DMRA 4RV0A 2PI8A 3DMRA 1PQEA 3IR7A 1G8JA 5T5ID 2PMZA 2JIQA 1TWAA 4KLNA 3CQZA 3HU3A 5C18A 2G6GA 3GTGA 2JA5A 4D7ZB 5FTLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GTQ A;  1VC3 B;  2YU9 A;  1TWH A;  4KDI A;  1PYU B;  3CF2 A;  5T5M D;  1R27 A;  4GA5 A;  3GTO A;  3QWZ A;  3FKI A;  4CRY G;  5B6C A;  1DMR A;  2R7Z A;  2EEO B;  1PT0 A;  4KOD A;  4C2M A;  2VUM A;  5DYI A;  1E61 A;  4CS0 A;  1H5N A;  1FDI A;  1IW7 D;  1H0H A;  1TMO A;  1I50 A;  5FTJ A;  1Y5I A;  1EU1 A;  3QC8 A;  2JIO A;  1Y1W A;  1CZ5 A;  3IR6 A;  1AA6 A;  1E32 A;  3TIW A;  2R92 A;  1TWF A;  1FDO A;  1I3Q A;  2JA7 A;  2C45 A;  3O5A A;  2R93 A;  1PT1 A;  2VPX A;  2B63 A;  4DMR A;  3HU1 A;  4KO8 A;  1WLF A;  1TWG A;  2E7Z A;  4GA6 A;  1OGY A;  2NVX A;  1R7R A;  4AZD A;  3HU2 A;  2V3V A;  2VPW A;  2VPZ A;  1PQF A;  3GTM A;  2IV2 X;  2NAP A;  3OUG A;  2V45 A;  3PLX B;  3ML1 A;  3HKZ A;  1AW8 B;  5GLF A;  4KDL A;  5FTN A;  3GTP A;  4AON B;  2NYA A;  3GTK A;  2JIR A;  1UHD A;  1E60 A;  3GTL A;  1SIW A;  1KQF A;  1KQG A;  1YLE A;  5FTM A;  1R9T A;  1UHE A;  2NVY A;  5DYG A;  1Y1V A;  4CRZ A;  1K83 A;  1DMS A;  1S3S A;  1E18 A;  2JA6 A;  2KI8 A;  2WAQ A;  3QQ7 A;  3QQ8 A;  2JIM A;  1PPY A;  3TM7 B;  1TWC A;  4QIW A;  1QCS A;  1SFO A;  3IR5 A;  1CZ4 A;  4AOK B;  5C1B A;  2Y0S A;  1G8K A;  2VPY A;  2E2H A;  3H0G A;  1E5V A;  1WCM A;  3GTJ A;  1PYQ A;  4AYB A;  4AAY A;  2WB1 A;  2PJH B;  1PQH A;  1QDN A;  2E2I A;  5FTK A;  1Y4Z A;  5EPP A;  1CR5 A;  1Q16 A;  2JIP A;  2DMR A;  4RV0 A;  3DMR A;  3IR7 A;  1PQE A;  1G8J A;  5T5I D;  2PMZ A;  2JIQ A;  1TWA A;  4KLN A;  3CQZ A;  3HU3 A;  5C18 A;  3GTG A;  2JA5 A;  4D7Z B;  5FTL A; 
#chains in the Genus database with same CATH topology
 1N10 A;  3GTQ A;  1VC3 B;  2YU9 A;  1ZC1 A;  1TWH A;  4JCW A;  4KDI A;  1PYU B;  3CF2 A;  5T5M D;  3SUL A;  1R27 A;  4GA5 A;  3GTO A;  3QWZ A;  3FKI A;  4CRY G;  5B6C A;  1DMR A;  2R7Z A;  2PIC A;  2ENG A;  2EEO B;  3SUJ A;  1PT0 A;  4KOD A;  4C2M A;  2VUM A;  5DYI A;  1E61 A;  4AVR A;  4CS0 A;  1H5N A;  4JJO A;  1FDI A;  1IW7 D;  1H0H A;  1TMO A;  1I50 A;  4ENG A;  4FER A;  2YUJ A;  1Y5I A;  1EU1 A;  4JS7 A;  5FTJ A;  3QC8 A;  4D7Z B;  2JIO A;  1Y1W A;  1CZ5 A;  3IR6 A;  1AA6 A;  1E32 A;  3TIW A;  3X2O A;  2R92 A;  1TWF A;  1FDO A;  3X2N A;  1I3Q A;  2JA7 A;  2C45 A;  3O5A A;  2R93 A;  1PT1 A;  2VPX A;  2B63 A;  4DMR A;  3HU1 A;  4KO8 A;  3X2K A;  1WLF A;  1TWG A;  2BE5 D;  2E7Z A;  1OGY A;  1OA7 A;  4GA6 A;  2NVX A;  3M3G A;  1R7R A;  1YNJ D;  4AZD A;  2HCZ X;  3HU2 A;  1HD5 A;  2V3V A;  2VPW A;  2VPZ A;  1PQF A;  3GTM A;  2IV2 X;  2NAP A;  3OUG A;  1ZYR D;  2GAE A;  2V45 A;  2A68 D;  3PLX B;  4NOH A;  3ML1 A;  3HKZ A;  1AW8 B;  5GLF A;  4KDL A;  5FTN A;  3X2J A;  3SUM A;  3GTP A;  4AON B;  2NYA A;  2O5J D;  3GTK A;  2JIR A;  2KQA A;  1UHD A;  1SMY D;  1E60 A;  4FG2 A;  3GTL A;  3X2L A;  1SIW A;  3X2G A;  5GLY A;  1KQF A;  5H4U A;  1KQG A;  1YLE A;  5FTM A;  1R9T A;  1UHE A;  2NVY A;  2A6E D;  5DYG A;  1Y1V A;  3CZB A;  4CRZ A;  1K83 A;  1DMS A;  5GM9 A;  1S3S A;  4FFT A;  1E18 A;  4JP7 A;  2AE0 X;  2JA6 A;  2KI8 A;  2WAQ A;  3QQ7 A;  3QQ8 A;  2PNW A;  3X2P A;  2JIM A;  4JP6 A;  1PPY A;  1L8F A;  3TM7 B;  5GLX A;  3X2M A;  3X2H A;  2CW0 D;  1TWC A;  1OA9 A;  1QCS A;  1WC2 A;  4QIW A;  2PJJ A;  1SFO A;  3IR5 A;  2G5D A;  1CZ4 A;  4AOK B;  5C1B A;  2Y0S A;  2BH0 A;  4L48 A;  1G8K A;  2VPY A;  2E2H A;  3SUK A;  3H0G A;  3X2I A;  1E5V A;  1WCM A;  3GTJ A;  1PYQ A;  1YNN D;  1BW4 A;  4AYB A;  4AAY A;  2WB1 A;  3ENG A;  4ZM7 A;  2PJH B;  1PQH A;  1QDN A;  2E2I A;  5FTK A;  1Y4Z A;  5EPP A;  1CR5 A;  1Q16 A;  2JIP A;  2A6H D;  2A69 D;  2DMR A;  4RV0 A;  2PI8 A;  3DMR A;  1PQE A;  3D30 A;  3IR7 A;  1G8J A;  5T5I D;  2PMZ A;  2JIQ A;  1TWA A;  1BW3 A;  4KLN A;  3CQZ A;  3HU3 A;  5C18 A;  2G6G A;  3GTG A;  2JA5 A;  4FG4 A;  5FTL A; 
#chains in the Genus database with same CATH homology
 3GTQ A;  1VC3 B;  2YU9 A;  1ZC1 A;  1TWH A;  4KDI A;  1PYU B;  3CF2 A;  5T5M D;  1R27 A;  4GA5 A;  3GTO A;  3QWZ A;  3FKI A;  4CRY G;  5B6C A;  1DMR A;  2R7Z A;  2PIC A;  2EEO B;  1PT0 A;  4KOD A;  4C2M A;  2VUM A;  5DYI A;  1E61 A;  4CS0 A;  1H5N A;  1FDI A;  1IW7 D;  1H0H A;  1TMO A;  1I50 A;  2YUJ A;  1Y5I A;  1EU1 A;  5FTJ A;  3QC8 A;  2JIO A;  1Y1W A;  1CZ5 A;  3IR6 A;  1AA6 A;  1E32 A;  3TIW A;  2R92 A;  1TWF A;  1FDO A;  1I3Q A;  2JA7 A;  2C45 A;  3O5A A;  2R93 A;  1PT1 A;  2VPX A;  2B63 A;  4DMR A;  3HU1 A;  4KO8 A;  1WLF A;  1TWG A;  2BE5 D;  2E7Z A;  1OGY A;  4GA6 A;  2NVX A;  1R7R A;  1YNJ D;  4AZD A;  3HU2 A;  2V3V A;  2VPW A;  2VPZ A;  1PQF A;  3GTM A;  2IV2 X;  2NAP A;  3OUG A;  1ZYR D;  2GAE A;  2V45 A;  2A68 D;  3PLX B;  4NOH A;  3ML1 A;  3HKZ A;  1AW8 B;  5GLF A;  4KDL A;  5FTN A;  3GTP A;  4AON B;  2NYA A;  2O5J D;  3GTK A;  2JIR A;  1UHD A;  1SMY D;  1E60 A;  3GTL A;  1SIW A;  1KQF A;  1KQG A;  1YLE A;  5FTM A;  1R9T A;  1UHE A;  2NVY A;  2A6E D;  5DYG A;  1Y1V A;  3CZB A;  4CRZ A;  1K83 A;  1DMS A;  1S3S A;  1E18 A;  2AE0 X;  2JA6 A;  2KI8 A;  2WAQ A;  3QQ7 A;  3QQ8 A;  2PNW A;  2JIM A;  1PPY A;  3TM7 B;  2CW0 D;  1TWC A;  4QIW A;  1QCS A;  1SFO A;  2PJJ A;  3IR5 A;  2G5D A;  1CZ4 A;  4AOK B;  5C1B A;  2Y0S A;  1G8K A;  2VPY A;  2E2H A;  3H0G A;  1E5V A;  1WCM A;  3GTJ A;  1PYQ A;  1YNN D;  4AYB A;  4AAY A;  2WB1 A;  2PJH B;  1PQH A;  1QDN A;  2E2I A;  5FTK A;  1Y4Z A;  5EPP A;  1CR5 A;  1Q16 A;  2JIP A;  2A6H D;  2A69 D;  2DMR A;  4RV0 A;  2PI8 A;  3DMR A;  1PQE A;  3IR7 A;  1G8J A;  5T5I D;  2PMZ A;  2JIQ A;  1TWA A;  4KLN A;  3CQZ A;  3HU3 A;  5C18 A;  2G6G A;  3GTG A;  2JA5 A;  4D7Z B;  5FTL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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