1PT0A

Unprocessed pyruvoyl dependent aspartate decarboxylase with an alanine insertion at position 26
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
117
structure length
117
Chain Sequence
SMIRTMLQGKLHRVKVTHADLHYEGSACAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Aspartate 1-decarboxylase
publication title Structural constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
source organism Escherichia coli
total genus 36
structure length 117
sequence length 117
chains with identical sequence B
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-06-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1pt0A00
5FTMA 1UHEA 5T5ID 1KQGA 2EEOB 3HU2A 4KDIA 2JIQA 4QIWA 1YLEA 1Y1WA 1H5NA 4AZDA 1FDIA 2YU9A 2PMZA 1G8JA 4RV0A 3H0GA 3IR7A 5C1BA 1I50A 1TWHA 3HKZA 5FTNA 4CRYG 2R7ZA 2IV2X 5FTLA 1G8KA 4D7ZB 1PYUB 1E5VA 2V45A 3GTPA 4AAYA 1PQHA 2B63A 2JIRA 2NVXA 4C2MA 2NAPA 1PQFA 3QWZA 3GTOA 1PT0A 4AYBA 1VC3B 1E32A 3QC8A 1WCMA 1IW7D 3IR5A 1R7RA 3GTGA 3CQZA 5C18A 1R9TA 5GLFA 2R92A 3OUGA 4KODA 3TIWA 2V3VA 3GTKA 3GTMA 2C45A 1H0HA 3GTLA 1E18A 3DMRA 5FTJA 1CZ5A 2VPXA 2VPYA 2JA7A 2JIMA 5FTKA 5EPPA 1CZ4A 2E2IA 2VUMA 3ML1A 2JA6A 1R27A 1S3SA 1PT1A 3TM7B 1PQEA 2E2HA 1AA6A 2NYAA 1TWGA 5DYGA 5DYIA 2NVYA 3HU3A 4CS0A 1E61A 1TMOA 1Y4ZA 4KDLA 4KO8A 1QDNA 1PPYA 3QQ8A 3IR6A 5T5MD 1QCSA 1Y1VA 1SFOA 1TWFA 1Q16A 1KQFA 2DMRA 3PLXB 2JIPA 2WB1A 1TWAA 3CF2A 2Y0SA 1SIWA 4KLNA 2R93A 3GTJA 4AONB 1TWCA 3GTQA 1WLFA 3O5AA 4GA6A 1AW8B 1OGYA 5B6CA 1DMSA 1EU1A 1Y5IA 2JA5A 2KI8A 1UHDA 4DMRA 1I3QA 4GA5A 2PJHB 1PYQA 1FDOA 2VPZA 1DMRA 2WAQA 2E7ZA 3HU1A 4CRZA 3QQ7A 1CR5A 1E60A 1K83A 2VPWA 4AOKB 3FKIA 2JIOA
chains in the Genus database with same CATH superfamily
5FTMA 2E2HA 1UHEA 5T5ID 1KQGA 2EEOB 3HU2A 4FG4A 4KDIA 2JIQA 4QIWA 1YLEA 3M3GA 1Y1WA 1H5NA 3X2PA 4AZDA 1FDIA 2YU9A 2PMZA 1G8JA 1L8FA 4RV0A 3H0GA 3IR7A 5C1BA 2G6GA 1I50A 1N10A 1TWHA 3HKZA 5FTNA 4CRYG 2R7ZA 2IV2X 3SUMA 5FTLA 4FFTA 3X2OA 1G8KA 1OA7A 3X2GA 4ENGA 4D7ZB 1PYUB 1E5VA 1BW3A 2V45A 3GTPA 4AAYA 1PQHA 2B63A 4L48A 2JIRA 2NVXA 3X2JA 4JP7A 4C2MA 1PQFA 2NAPA 3QWZA 3GTOA 1PT0A 2KQAA 4AYBA 1VC3B 5GLXA 1E32A 3QC8A 5GM9A 5H4UA 2PNWA 3SUJA 1WCMA 1IW7D 3IR5A 1HD5A 1R7RA 5GLYA 1ZC1A 4AVRA 3CQZA 3GTGA 1YNJD 4JS7A 3X2HA 2A6ED 5C18A 2PICA 1OA9A 1R9TA 4FG2A 5GLFA 2R92A 3OUGA 4KODA 3TIWA 2PJJA 2V3VA 3GTKA 3GTMA 2C45A 1H0HA 3GTLA 1E18A 3DMRA 5FTJA 3X2IA 2VPXA 2VPYA 1CZ5A 1ZYRD 2JA7A 2JIMA 5FTKA 5EPPA 2G5DA 1CZ4A 2E2IA 2VUMA 3ML1A 2JA6A 1WC2A 2A69D 1R27A 1S3SA 1PT1A 2A6HD 3TM7B 1PQEA 1BW4A 2HCZX 2PI8A 1AA6A 2NYAA 1TWGA 5DYGA 5DYIA 2NVYA 3HU3A 4CS0A 1E61A 2BE5D 1TMOA 1Y4ZA 4KDLA 4KO8A 1QDNA 4FERA 1PPYA 3QQ8A 3IR6A 5T5MD 1QCSA 1Y1VA 1SFOA 2BH0A 1TWFA 1Q16A 1KQFA 2DMRA 3CZBA 3PLXB 2JIPA 1YNND 2WB1A 2O5JD 3ENGA 1TWAA 3CF2A 4JP6A 2Y0SA 4JCWA 1SIWA 3SUKA 4KLNA 2R93A 3GTJA 3X2KA 2JIOA 4AONB 1TWCA 3GTQA 1WLFA 3SULA 3D30A 3O5AA 4GA6A 3X2NA 1AW8B 1OGYA 5B6CA 1DMSA 4ZM7A 1EU1A 1Y5IA 2JA5A 2KI8A 3X2LA 2ENGA 1UHDA 2A68D 4DMRA 1I3QA 4GA5A 2PJHB 1PYQA 2AE0X 1FDOA 2VPZA 1DMRA 2WAQA 2E7ZA 3HU1A 4CRZA 4JJOA 3QQ7A 2CW0D 1CR5A 2YUJA 1E60A 3X2MA 1K83A 2VPWA 4NOHA 1SMYD 4AOKB 3FKIA 2GAEA
chains in the Genus database with same CATH topology
5FTMA 1UHEA 5T5ID 1KQGA 2EEOB 3HU2A 4KDIA 2JIQA 4QIWA 1YLEA 1Y1WA 1H5NA 4AZDA 1FDIA 2YU9A 2PMZA 1G8JA 4RV0A 3H0GA 3IR7A 5C1BA 2G6GA 1I50A 1TWHA 3HKZA 5FTNA 4CRYG 2R7ZA 2IV2X 5FTLA 1G8KA 4D7ZB 1PYUB 1E5VA 2V45A 3GTPA 4AAYA 1PQHA 2B63A 2JIRA 2NVXA 4C2MA 2NAPA 1PQFA 3QWZA 3GTOA 1PT0A 4AYBA 1VC3B 1E32A 3QC8A 2PNWA 1WCMA 1IW7D 3IR5A 1R7RA 1ZC1A 3GTGA 3CQZA 1YNJD 5C18A 2A6ED 2PICA 1R9TA 5GLFA 2R92A 3OUGA 4KODA 3TIWA 2PJJA 2V3VA 3GTKA 3GTMA 2C45A 1H0HA 3GTLA 1E18A 3DMRA 5FTJA 1CZ5A 2VPXA 2VPYA 1ZYRD 2JA7A 2JIMA 5FTKA 5EPPA 2G5DA 1CZ4A 2E2IA 2VUMA 3ML1A 2JA6A 2A69D 1R27A 1S3SA 1PT1A 2A6HD 3TM7B 1PQEA 2E2HA 2PI8A 1AA6A 2NYAA 1TWGA 5DYGA 5DYIA 2NVYA 3HU3A 4CS0A 1E61A 2GAEA 2BE5D 1TMOA 1Y4ZA 4KDLA 4KO8A 1QDNA 1PPYA 3QQ8A 3IR6A 5T5MD 1QCSA 1Y1VA 1SFOA 1TWFA 1Q16A 1KQFA 2DMRA 3CZBA 3PLXB 2JIPA 1YNND 2WB1A 2O5JD 1TWAA 3CF2A 2Y0SA 1SIWA 4KLNA 2R93A 3GTJA 4AONB 1TWCA 3GTQA 1WLFA 3O5AA 4GA6A 1AW8B 1OGYA 5B6CA 1DMSA 1EU1A 1Y5IA 2JA5A 2KI8A 1UHDA 2A68D 4DMRA 1I3QA 4GA5A 2PJHB 1PYQA 2AE0X 1FDOA 2VPZA 1DMRA 2WAQA 2E7ZA 3HU1A 4CRZA 3QQ7A 2CW0D 1CR5A 2YUJA 1E60A 1K83A 2VPWA 4NOHA 1SMYD 4AOKB 3FKIA 2JIOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5FTM A;  1UHE A;  5T5I D;  1KQG A;  2EEO B;  3HU2 A;  4KDI A;  2JIQ A;  4QIW A;  1YLE A;  1Y1W A;  1H5N A;  4AZD A;  1FDI A;  2YU9 A;  2PMZ A;  1G8J A;  4RV0 A;  3H0G A;  3IR7 A;  5C1B A;  1I50 A;  1TWH A;  3HKZ A;  5FTN A;  4CRY G;  2R7Z A;  2IV2 X;  5FTL A;  1G8K A;  4D7Z B;  1PYU B;  1E5V A;  2V45 A;  3GTP A;  4AAY A;  1PQH A;  2B63 A;  2JIR A;  2NVX A;  4C2M A;  2NAP A;  1PQF A;  3QWZ A;  3GTO A;  1PT0 A;  4AYB A;  1VC3 B;  1E32 A;  3QC8 A;  1WCM A;  1IW7 D;  3IR5 A;  1R7R A;  3GTG A;  3CQZ A;  5C18 A;  1R9T A;  5GLF A;  2R92 A;  3OUG A;  4KOD A;  3TIW A;  2V3V A;  3GTK A;  3GTM A;  2C45 A;  1H0H A;  3GTL A;  1E18 A;  3DMR A;  5FTJ A;  1CZ5 A;  2VPX A;  2VPY A;  2JA7 A;  2JIM A;  5FTK A;  5EPP A;  1CZ4 A;  2E2I A;  2VUM A;  3ML1 A;  2JA6 A;  1R27 A;  1S3S A;  1PT1 A;  3TM7 B;  1PQE A;  2E2H A;  1AA6 A;  2NYA A;  1TWG A;  5DYG A;  5DYI A;  2NVY A;  3HU3 A;  4CS0 A;  1E61 A;  1TMO A;  1Y4Z A;  4KDL A;  4KO8 A;  1QDN A;  1PPY A;  3QQ8 A;  3IR6 A;  5T5M D;  1QCS A;  1Y1V A;  1SFO A;  1TWF A;  1Q16 A;  1KQF A;  2DMR A;  3PLX B;  2JIP A;  2WB1 A;  1TWA A;  3CF2 A;  2Y0S A;  1SIW A;  4KLN A;  2R93 A;  3GTJ A;  4AON B;  1TWC A;  3GTQ A;  1WLF A;  3O5A A;  4GA6 A;  1AW8 B;  1OGY A;  5B6C A;  1DMS A;  1EU1 A;  1Y5I A;  2JA5 A;  2KI8 A;  1UHD A;  4DMR A;  1I3Q A;  4GA5 A;  2PJH B;  1PYQ A;  1FDO A;  2VPZ A;  1DMR A;  2WAQ A;  2E7Z A;  3HU1 A;  4CRZ A;  3QQ7 A;  1CR5 A;  1E60 A;  1K83 A;  2VPW A;  4AOK B;  3FKI A;  2JIO A; 
#chains in the Genus database with same CATH topology
 5FTM A;  2E2H A;  1UHE A;  5T5I D;  1KQG A;  2EEO B;  3HU2 A;  4FG4 A;  4KDI A;  2JIQ A;  4QIW A;  1YLE A;  3M3G A;  1Y1W A;  1H5N A;  3X2P A;  4AZD A;  1FDI A;  2YU9 A;  2PMZ A;  1G8J A;  1L8F A;  4RV0 A;  3H0G A;  3IR7 A;  5C1B A;  2G6G A;  1I50 A;  1N10 A;  1TWH A;  3HKZ A;  5FTN A;  4CRY G;  2R7Z A;  2IV2 X;  3SUM A;  5FTL A;  4FFT A;  3X2O A;  1G8K A;  1OA7 A;  3X2G A;  4ENG A;  4D7Z B;  1PYU B;  1E5V A;  1BW3 A;  2V45 A;  3GTP A;  4AAY A;  1PQH A;  2B63 A;  4L48 A;  2JIR A;  2NVX A;  3X2J A;  4JP7 A;  4C2M A;  1PQF A;  2NAP A;  3QWZ A;  3GTO A;  1PT0 A;  2KQA A;  4AYB A;  1VC3 B;  5GLX A;  1E32 A;  3QC8 A;  5GM9 A;  5H4U A;  2PNW A;  3SUJ A;  1WCM A;  1IW7 D;  3IR5 A;  1HD5 A;  1R7R A;  5GLY A;  1ZC1 A;  4AVR A;  3CQZ A;  3GTG A;  1YNJ D;  4JS7 A;  3X2H A;  2A6E D;  5C18 A;  2PIC A;  1OA9 A;  1R9T A;  4FG2 A;  5GLF A;  2R92 A;  3OUG A;  4KOD A;  3TIW A;  2PJJ A;  2V3V A;  3GTK A;  3GTM A;  2C45 A;  1H0H A;  3GTL A;  1E18 A;  3DMR A;  5FTJ A;  3X2I A;  2VPX A;  2VPY A;  1CZ5 A;  1ZYR D;  2JA7 A;  2JIM A;  5FTK A;  5EPP A;  2G5D A;  1CZ4 A;  2E2I A;  2VUM A;  3ML1 A;  2JA6 A;  1WC2 A;  2A69 D;  1R27 A;  1S3S A;  1PT1 A;  2A6H D;  3TM7 B;  1PQE A;  1BW4 A;  2HCZ X;  2PI8 A;  1AA6 A;  2NYA A;  1TWG A;  5DYG A;  5DYI A;  2NVY A;  3HU3 A;  4CS0 A;  1E61 A;  2BE5 D;  1TMO A;  1Y4Z A;  4KDL A;  4KO8 A;  1QDN A;  4FER A;  1PPY A;  3QQ8 A;  3IR6 A;  5T5M D;  1QCS A;  1Y1V A;  1SFO A;  2BH0 A;  1TWF A;  1Q16 A;  1KQF A;  2DMR A;  3CZB A;  3PLX B;  2JIP A;  1YNN D;  2WB1 A;  2O5J D;  3ENG A;  1TWA A;  3CF2 A;  4JP6 A;  2Y0S A;  4JCW A;  1SIW A;  3SUK A;  4KLN A;  2R93 A;  3GTJ A;  3X2K A;  2JIO A;  4AON B;  1TWC A;  3GTQ A;  1WLF A;  3SUL A;  3D30 A;  3O5A A;  4GA6 A;  3X2N A;  1AW8 B;  1OGY A;  5B6C A;  1DMS A;  4ZM7 A;  1EU1 A;  1Y5I A;  2JA5 A;  2KI8 A;  3X2L A;  2ENG A;  1UHD A;  2A68 D;  4DMR A;  1I3Q A;  4GA5 A;  2PJH B;  1PYQ A;  2AE0 X;  1FDO A;  2VPZ A;  1DMR A;  2WAQ A;  2E7Z A;  3HU1 A;  4CRZ A;  4JJO A;  3QQ7 A;  2CW0 D;  1CR5 A;  2YUJ A;  1E60 A;  3X2M A;  1K83 A;  2VPW A;  4NOH A;  1SMY D;  4AOK B;  3FKI A;  2GAE A; 
#chains in the Genus database with same CATH homology
 5FTM A;  1UHE A;  5T5I D;  1KQG A;  2EEO B;  3HU2 A;  4KDI A;  2JIQ A;  4QIW A;  1YLE A;  1Y1W A;  1H5N A;  4AZD A;  1FDI A;  2YU9 A;  2PMZ A;  1G8J A;  4RV0 A;  3H0G A;  3IR7 A;  5C1B A;  2G6G A;  1I50 A;  1TWH A;  3HKZ A;  5FTN A;  4CRY G;  2R7Z A;  2IV2 X;  5FTL A;  1G8K A;  4D7Z B;  1PYU B;  1E5V A;  2V45 A;  3GTP A;  4AAY A;  1PQH A;  2B63 A;  2JIR A;  2NVX A;  4C2M A;  2NAP A;  1PQF A;  3QWZ A;  3GTO A;  1PT0 A;  4AYB A;  1VC3 B;  1E32 A;  3QC8 A;  2PNW A;  1WCM A;  1IW7 D;  3IR5 A;  1R7R A;  1ZC1 A;  3GTG A;  3CQZ A;  1YNJ D;  5C18 A;  2A6E D;  2PIC A;  1R9T A;  5GLF A;  2R92 A;  3OUG A;  4KOD A;  3TIW A;  2PJJ A;  2V3V A;  3GTK A;  3GTM A;  2C45 A;  1H0H A;  3GTL A;  1E18 A;  3DMR A;  5FTJ A;  1CZ5 A;  2VPX A;  2VPY A;  1ZYR D;  2JA7 A;  2JIM A;  5FTK A;  5EPP A;  2G5D A;  1CZ4 A;  2E2I A;  2VUM A;  3ML1 A;  2JA6 A;  2A69 D;  1R27 A;  1S3S A;  1PT1 A;  2A6H D;  3TM7 B;  1PQE A;  2E2H A;  2PI8 A;  1AA6 A;  2NYA A;  1TWG A;  5DYG A;  5DYI A;  2NVY A;  3HU3 A;  4CS0 A;  1E61 A;  2GAE A;  2BE5 D;  1TMO A;  1Y4Z A;  4KDL A;  4KO8 A;  1QDN A;  1PPY A;  3QQ8 A;  3IR6 A;  5T5M D;  1QCS A;  1Y1V A;  1SFO A;  1TWF A;  1Q16 A;  1KQF A;  2DMR A;  3CZB A;  3PLX B;  2JIP A;  1YNN D;  2WB1 A;  2O5J D;  1TWA A;  3CF2 A;  2Y0S A;  1SIW A;  4KLN A;  2R93 A;  3GTJ A;  4AON B;  1TWC A;  3GTQ A;  1WLF A;  3O5A A;  4GA6 A;  1AW8 B;  1OGY A;  5B6C A;  1DMS A;  1EU1 A;  1Y5I A;  2JA5 A;  2KI8 A;  1UHD A;  2A68 D;  4DMR A;  1I3Q A;  4GA5 A;  2PJH B;  1PYQ A;  2AE0 X;  1FDO A;  2VPZ A;  1DMR A;  2WAQ A;  2E7Z A;  3HU1 A;  4CRZ A;  3QQ7 A;  2CW0 D;  1CR5 A;  2YUJ A;  1E60 A;  1K83 A;  2VPW A;  4NOH A;  1SMY D;  4AOK B;  3FKI A;  2JIO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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