1PT0A

Unprocessed pyruvoyl dependent aspartate decarboxylase with an alanine insertion at position 26
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
117
structure length
117
Chain Sequence
SMIRTMLQGKLHRVKVTHADLHYEGSACAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Aspartate 1-decarboxylase
publication title Structural constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
source organism Escherichia coli
molecule tags Lyase
total genus 36
structure length 117
sequence length 117
chains with identical sequence B
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-06-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1pt0A00
3GTOA 5FTKA 1QCSA 2E2HA 3GTGA 3HU3A 1E32A 2NAPA 5DYIA 4DMRA 4RV0A 1YLEA 3DMRA 4AYBA 2JA6A 1DMRA 1SFOA 5B6CA 1UHEA 1FDOA 2YU9A 3TM7B 2PJHB 1TWCA 1WCMA 1TWAA 4KODA 1PPYA 2NYAA 4AZDA 1PQEA 1TWHA 4KDIA 1CZ4A 4QIWA 5FTNA 3IR6A 4CRYG 1G8JA 2E2IA 2EEOB 4D7ZB 1Y5IA 2R7ZA 3HU1A 1WLFA 2V3VA 5T5MD 1AW8B 1IW7D 1CR5A 5T5ID 4AAYA 1PYQA 3GTJA 4KDLA 2NVXA 1PYUB 1VC3B 3HKZA 1E18A 2JA5A 3QC8A 3GTMA 5FTJA 3GTLA 2Y0SA 3ML1A 3PLXB 1OGYA 1PQFA 3O5AA 2C45A 4AONB 1E60A 3CF2A 4KO8A 1QDNA 2VPXA 4C2MA 3QQ8A 1E61A 1UHDA 3GTQA 2B63A 1TMOA 3H0GA 1AA6A 2JIRA 2KI8A 2VPZA 5FTLA 3GTPA 1PQHA 3FKIA 5FTMA 4AOKB 1R27A 3QWZA 4CS0A 2JIOA 3HU2A 1R9TA 1FDIA 5GLFA 2E7ZA 5DYGA 1SIWA 1G8KA 1Y1WA 5C1BA 3IR5A 2WAQA 1H5NA 4KLNA 5EPPA 3IR7A 2R92A 1S3SA 1KQFA 3TIWA 5C18A 1H0HA 1KQGA 1TWFA 2VPWA 2WB1A 2IV2X 1R7RA 2JIQA 1EU1A 2PMZA 3CQZA 2JIMA 1I50A 1CZ5A 1DMSA 1Q16A 2V45A 3GTKA 2VUMA 1E5VA 2JA7A 1K83A 4GA5A 1TWGA 2JIPA 4CRZA 2DMRA 4GA6A 1Y1VA 1Y4ZA 1I3QA 2VPYA 3OUGA 2R93A 1PT1A 2NVYA 3QQ7A 1PT0A
chains in the Genus database with same CATH superfamily
3GTOA 5FTKA 1QCSA 2E2HA 3GTGA 3HU3A 3X2IA 1E32A 2NAPA 2PICA 3X2MA 5DYIA 4DMRA 4RV0A 1YLEA 2O5JD 3SULA 3DMRA 4AYBA 2JA6A 2BE5D 1DMRA 1SFOA 5B6CA 1UHEA 2ENGA 3ENGA 1FDOA 3X2OA 2A6HD 2YU9A 3X2JA 1L8FA 3TM7B 2PJHB 5GLYA 4FERA 4JJOA 1TWCA 1WCMA 5GM9A 3SUMA 1BW4A 1TWAA 4KODA 3SUJA 1PPYA 2NYAA 4AZDA 1PQEA 1TWHA 4KDIA 1CZ4A 4QIWA 5FTNA 3IR6A 4CRYG 1G8JA 2E2IA 2EEOB 4D7ZB 1HD5A 1Y5IA 2PI8A 2R7ZA 3HU1A 1WLFA 2V3VA 5T5MD 1AW8B 1IW7D 3X2GA 1CR5A 5T5ID 4AAYA 1PYQA 3GTJA 4KDLA 2NVXA 4ZM7A 1ZC1A 1YNND 1PYUB 1VC3B 1WC2A 1E18A 2YUJA 3HKZA 3QC8A 4JS7A 2JA5A 3GTMA 5FTJA 3GTLA 2Y0SA 2PNWA 3ML1A 3PLXB 5H4UA 1OGYA 2PJJA 1PQFA 3O5AA 2C45A 4FG2A 3X2LA 4FFTA 4AONB 1E60A 3CF2A 3CZBA 4KO8A 1QDNA 2VPXA 3X2HA 2HCZX 4C2MA 3QQ8A 3X2NA 1E61A 1UHDA 4FG4A 3GTQA 2B63A 1TMOA 3H0GA 1AA6A 1OA7A 2JIRA 2KI8A 2VPZA 5FTLA 3GTPA 1YNJD 2BH0A 1PQHA 3SUKA 3FKIA 5FTMA 4AOKB 1R27A 3QWZA 1SMYD 4JP7A 4CS0A 2JIOA 3HU2A 3M3GA 1R9TA 1FDIA 4JP6A 2E7ZA 4JCWA 5DYGA 1SIWA 1G8KA 5GLFA 1BW3A 2GAEA 3D30A 1Y1WA 2CW0D 5C1BA 3IR5A 2WAQA 1H5NA 4KLNA 5EPPA 1OA9A 2A68D 3IR7A 2A69D 2R92A 1S3SA 1KQFA 3TIWA 5C18A 1H0HA 2AE0X 1KQGA 1TWFA 2VPWA 4L48A 2WB1A 2IV2X 4ENGA 1ZYRD 1R7RA 2G6GA 3X2KA 2JIQA 1EU1A 2PMZA 3CQZA 4NOHA 2JIMA 1I50A 3X2PA 1CZ5A 1N10A 2G5DA 1DMSA 1Q16A 2A6ED 2KQAA 2V45A 3GTKA 2VUMA 1E5VA 2JA7A 1K83A 4GA5A 1TWGA 4AVRA 2JIPA 4CRZA 2DMRA 4GA6A 1Y1VA 1Y4ZA 1I3QA 5GLXA 2VPYA 3OUGA 2R93A 1PT1A 2NVYA 3QQ7A 1PT0A
chains in the Genus database with same CATH topology
3GTOA 5FTKA 1QCSA 2E2HA 3GTGA 3HU3A 1E32A 2NAPA 2PICA 5DYIA 4DMRA 4RV0A 1YLEA 2O5JD 3DMRA 4AYBA 2JA6A 2BE5D 1DMRA 1SFOA 5B6CA 1UHEA 1FDOA 2A6HD 2YU9A 3TM7B 2PJHB 1TWCA 1WCMA 1TWAA 4KODA 1PPYA 2NYAA 4AZDA 1PQEA 1TWHA 4KDIA 1CZ4A 4QIWA 5FTNA 3IR6A 4CRYG 1G8JA 2E2IA 2EEOB 4D7ZB 1Y5IA 2PI8A 2R7ZA 3HU1A 1WLFA 2V3VA 5T5MD 1AW8B 1IW7D 1CR5A 5T5ID 4AAYA 1PYQA 3GTJA 4KDLA 2NVXA 1ZC1A 1YNND 1PYUB 1VC3B 3HKZA 1E18A 2YUJA 3QC8A 2JA5A 3GTMA 5FTJA 3GTLA 2Y0SA 2PNWA 3ML1A 3PLXB 1OGYA 2PJJA 1PQFA 3O5AA 2C45A 4AONB 1E60A 3CF2A 3CZBA 4KO8A 1QDNA 2VPXA 4C2MA 3QQ8A 1E61A 1UHDA 3GTQA 2B63A 1TMOA 3H0GA 1AA6A 2JIRA 2KI8A 2VPZA 5FTLA 3GTPA 1YNJD 1PQHA 3FKIA 5FTMA 4AOKB 1R27A 3QWZA 1SMYD 4CS0A 2JIOA 3HU2A 1R9TA 1FDIA 5GLFA 2E7ZA 5DYGA 1SIWA 1G8KA 2GAEA 1Y1WA 2CW0D 5C1BA 3IR5A 2WAQA 1H5NA 4KLNA 5EPPA 2A68D 3IR7A 2A69D 2R92A 1S3SA 1KQFA 3TIWA 5C18A 1H0HA 2AE0X 1KQGA 1TWFA 2VPWA 2WB1A 2IV2X 1ZYRD 1R7RA 2G6GA 2JIQA 1EU1A 2PMZA 3CQZA 4NOHA 2JIMA 1I50A 1CZ5A 2G5DA 1DMSA 1Q16A 2A6ED 2V45A 3GTKA 2VUMA 1E5VA 2JA7A 1K83A 4GA5A 1TWGA 2JIPA 4CRZA 2DMRA 4GA6A 1Y1VA 1Y4ZA 1I3QA 2VPYA 3OUGA 2R93A 1PT1A 2NVYA 3QQ7A 1PT0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GTO A;  5FTK A;  1QCS A;  2E2H A;  3GTG A;  3HU3 A;  1E32 A;  2NAP A;  5DYI A;  4DMR A;  4RV0 A;  1YLE A;  3DMR A;  4AYB A;  2JA6 A;  1DMR A;  1SFO A;  5B6C A;  1UHE A;  1FDO A;  2YU9 A;  3TM7 B;  2PJH B;  1TWC A;  1WCM A;  1TWA A;  4KOD A;  1PPY A;  2NYA A;  4AZD A;  1PQE A;  1TWH A;  4KDI A;  1CZ4 A;  4QIW A;  5FTN A;  3IR6 A;  4CRY G;  1G8J A;  2E2I A;  2EEO B;  4D7Z B;  1Y5I A;  2R7Z A;  3HU1 A;  1WLF A;  2V3V A;  5T5M D;  1AW8 B;  1IW7 D;  1CR5 A;  5T5I D;  4AAY A;  1PYQ A;  3GTJ A;  4KDL A;  2NVX A;  1PYU B;  1VC3 B;  3HKZ A;  1E18 A;  2JA5 A;  3QC8 A;  3GTM A;  5FTJ A;  3GTL A;  2Y0S A;  3ML1 A;  3PLX B;  1OGY A;  1PQF A;  3O5A A;  2C45 A;  4AON B;  1E60 A;  3CF2 A;  4KO8 A;  1QDN A;  2VPX A;  4C2M A;  3QQ8 A;  1E61 A;  1UHD A;  3GTQ A;  2B63 A;  1TMO A;  3H0G A;  1AA6 A;  2JIR A;  2KI8 A;  2VPZ A;  5FTL A;  3GTP A;  1PQH A;  3FKI A;  5FTM A;  4AOK B;  1R27 A;  3QWZ A;  4CS0 A;  2JIO A;  3HU2 A;  1R9T A;  1FDI A;  5GLF A;  2E7Z A;  5DYG A;  1SIW A;  1G8K A;  1Y1W A;  5C1B A;  3IR5 A;  2WAQ A;  1H5N A;  4KLN A;  5EPP A;  3IR7 A;  2R92 A;  1S3S A;  1KQF A;  3TIW A;  5C18 A;  1H0H A;  1KQG A;  1TWF A;  2VPW A;  2WB1 A;  2IV2 X;  1R7R A;  2JIQ A;  1EU1 A;  2PMZ A;  3CQZ A;  2JIM A;  1I50 A;  1CZ5 A;  1DMS A;  1Q16 A;  2V45 A;  3GTK A;  2VUM A;  1E5V A;  2JA7 A;  1K83 A;  4GA5 A;  1TWG A;  2JIP A;  4CRZ A;  2DMR A;  4GA6 A;  1Y1V A;  1Y4Z A;  1I3Q A;  2VPY A;  3OUG A;  2R93 A;  1PT1 A;  2NVY A;  3QQ7 A;  1PT0 A; 
#chains in the Genus database with same CATH topology
 3GTO A;  5FTK A;  1QCS A;  2E2H A;  3GTG A;  3HU3 A;  3X2I A;  1E32 A;  2NAP A;  2PIC A;  3X2M A;  5DYI A;  4DMR A;  4RV0 A;  1YLE A;  2O5J D;  3SUL A;  3DMR A;  4AYB A;  2JA6 A;  2BE5 D;  1DMR A;  1SFO A;  5B6C A;  1UHE A;  2ENG A;  3ENG A;  1FDO A;  3X2O A;  2A6H D;  2YU9 A;  3X2J A;  1L8F A;  3TM7 B;  2PJH B;  5GLY A;  4FER A;  4JJO A;  1TWC A;  1WCM A;  5GM9 A;  3SUM A;  1BW4 A;  1TWA A;  4KOD A;  3SUJ A;  1PPY A;  2NYA A;  4AZD A;  1PQE A;  1TWH A;  4KDI A;  1CZ4 A;  4QIW A;  5FTN A;  3IR6 A;  4CRY G;  1G8J A;  2E2I A;  2EEO B;  4D7Z B;  1HD5 A;  1Y5I A;  2PI8 A;  2R7Z A;  3HU1 A;  1WLF A;  2V3V A;  5T5M D;  1AW8 B;  1IW7 D;  3X2G A;  1CR5 A;  5T5I D;  4AAY A;  1PYQ A;  3GTJ A;  4KDL A;  2NVX A;  4ZM7 A;  1ZC1 A;  1YNN D;  1PYU B;  1VC3 B;  1WC2 A;  1E18 A;  2YUJ A;  3HKZ A;  3QC8 A;  4JS7 A;  2JA5 A;  3GTM A;  5FTJ A;  3GTL A;  2Y0S A;  2PNW A;  3ML1 A;  3PLX B;  5H4U A;  1OGY A;  2PJJ A;  1PQF A;  3O5A A;  2C45 A;  4FG2 A;  3X2L A;  4FFT A;  4AON B;  1E60 A;  3CF2 A;  3CZB A;  4KO8 A;  1QDN A;  2VPX A;  3X2H A;  2HCZ X;  4C2M A;  3QQ8 A;  3X2N A;  1E61 A;  1UHD A;  4FG4 A;  3GTQ A;  2B63 A;  1TMO A;  3H0G A;  1AA6 A;  1OA7 A;  2JIR A;  2KI8 A;  2VPZ A;  5FTL A;  3GTP A;  1YNJ D;  2BH0 A;  1PQH A;  3SUK A;  3FKI A;  5FTM A;  4AOK B;  1R27 A;  3QWZ A;  1SMY D;  4JP7 A;  4CS0 A;  2JIO A;  3HU2 A;  3M3G A;  1R9T A;  1FDI A;  4JP6 A;  2E7Z A;  4JCW A;  5DYG A;  1SIW A;  1G8K A;  5GLF A;  1BW3 A;  2GAE A;  3D30 A;  1Y1W A;  2CW0 D;  5C1B A;  3IR5 A;  2WAQ A;  1H5N A;  4KLN A;  5EPP A;  1OA9 A;  2A68 D;  3IR7 A;  2A69 D;  2R92 A;  1S3S A;  1KQF A;  3TIW A;  5C18 A;  1H0H A;  2AE0 X;  1KQG A;  1TWF A;  2VPW A;  4L48 A;  2WB1 A;  2IV2 X;  4ENG A;  1ZYR D;  1R7R A;  2G6G A;  3X2K A;  2JIQ A;  1EU1 A;  2PMZ A;  3CQZ A;  4NOH A;  2JIM A;  1I50 A;  3X2P A;  1CZ5 A;  1N10 A;  2G5D A;  1DMS A;  1Q16 A;  2A6E D;  2KQA A;  2V45 A;  3GTK A;  2VUM A;  1E5V A;  2JA7 A;  1K83 A;  4GA5 A;  1TWG A;  4AVR A;  2JIP A;  4CRZ A;  2DMR A;  4GA6 A;  1Y1V A;  1Y4Z A;  1I3Q A;  5GLX A;  2VPY A;  3OUG A;  2R93 A;  1PT1 A;  2NVY A;  3QQ7 A;  1PT0 A; 
#chains in the Genus database with same CATH homology
 3GTO A;  5FTK A;  1QCS A;  2E2H A;  3GTG A;  3HU3 A;  1E32 A;  2NAP A;  2PIC A;  5DYI A;  4DMR A;  4RV0 A;  1YLE A;  2O5J D;  3DMR A;  4AYB A;  2JA6 A;  2BE5 D;  1DMR A;  1SFO A;  5B6C A;  1UHE A;  1FDO A;  2A6H D;  2YU9 A;  3TM7 B;  2PJH B;  1TWC A;  1WCM A;  1TWA A;  4KOD A;  1PPY A;  2NYA A;  4AZD A;  1PQE A;  1TWH A;  4KDI A;  1CZ4 A;  4QIW A;  5FTN A;  3IR6 A;  4CRY G;  1G8J A;  2E2I A;  2EEO B;  4D7Z B;  1Y5I A;  2PI8 A;  2R7Z A;  3HU1 A;  1WLF A;  2V3V A;  5T5M D;  1AW8 B;  1IW7 D;  1CR5 A;  5T5I D;  4AAY A;  1PYQ A;  3GTJ A;  4KDL A;  2NVX A;  1ZC1 A;  1YNN D;  1PYU B;  1VC3 B;  3HKZ A;  1E18 A;  2YUJ A;  3QC8 A;  2JA5 A;  3GTM A;  5FTJ A;  3GTL A;  2Y0S A;  2PNW A;  3ML1 A;  3PLX B;  1OGY A;  2PJJ A;  1PQF A;  3O5A A;  2C45 A;  4AON B;  1E60 A;  3CF2 A;  3CZB A;  4KO8 A;  1QDN A;  2VPX A;  4C2M A;  3QQ8 A;  1E61 A;  1UHD A;  3GTQ A;  2B63 A;  1TMO A;  3H0G A;  1AA6 A;  2JIR A;  2KI8 A;  2VPZ A;  5FTL A;  3GTP A;  1YNJ D;  1PQH A;  3FKI A;  5FTM A;  4AOK B;  1R27 A;  3QWZ A;  1SMY D;  4CS0 A;  2JIO A;  3HU2 A;  1R9T A;  1FDI A;  5GLF A;  2E7Z A;  5DYG A;  1SIW A;  1G8K A;  2GAE A;  1Y1W A;  2CW0 D;  5C1B A;  3IR5 A;  2WAQ A;  1H5N A;  4KLN A;  5EPP A;  2A68 D;  3IR7 A;  2A69 D;  2R92 A;  1S3S A;  1KQF A;  3TIW A;  5C18 A;  1H0H A;  2AE0 X;  1KQG A;  1TWF A;  2VPW A;  2WB1 A;  2IV2 X;  1ZYR D;  1R7R A;  2G6G A;  2JIQ A;  1EU1 A;  2PMZ A;  3CQZ A;  4NOH A;  2JIM A;  1I50 A;  1CZ5 A;  2G5D A;  1DMS A;  1Q16 A;  2A6E D;  2V45 A;  3GTK A;  2VUM A;  1E5V A;  2JA7 A;  1K83 A;  4GA5 A;  1TWG A;  2JIP A;  4CRZ A;  2DMR A;  4GA6 A;  1Y1V A;  1Y4Z A;  1I3Q A;  2VPY A;  3OUG A;  2R93 A;  1PT1 A;  2NVY A;  3QQ7 A;  1PT0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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