1PT0A

Unprocessed pyruvoyl dependent aspartate decarboxylase with an alanine insertion at position 26
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
117
structure length
117
Chain Sequence
b'SMIRTMLQGKLHRVKVTHADLHYEGSACAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Aspartate 1-decarboxylase
molecule tags Lyase
source organism Escherichia coli
publication title Structural constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
total genus 36
structure length 117
sequence length 117
chains with identical sequence B
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-06-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1pt0A00
3DMRA 4KLNA 3QC8A 1PYUB 1PQEA 1R9TA 1FDOA 3IR5A 2V45A 4GA6A 2VPWA 2JA6A 2WB1A 3CF2A 3H0GA 4GA5A 5DYIA 1I50A 1E61A 1AW8B 1PPYA 1E18A 1G8KA 2VPXA 3QWZA 3HKZA 1TWCA 1E32A 2PMZA 1UHEA 5FTKA 5FTLA 3IR7A 1CR5A 3GTOA 1K83A 1CZ4A 3GTJA 3ML1A 4CS0A 1IW7D 2JA5A 1SIWA 3GTMA 2JIQA 1Y1VA 2WAQA 2KI8A 3OUGA 1E5VA 4D7ZB 1TWFA 1PT0A 2VUMA 1Q16A 1OGYA 4CRYG 4AZDA 1Y1WA 1QCSA 3HU2A 4AAYA 3O5AA 3FKIA 5T5ID 5B6CA 2JIMA 2JA7A 4KDIA 2NAPA 2E2IA 2R7ZA 5C18A 2VPYA 1UHDA 3PLXB 1KQGA 1Y4ZA 3HU1A 4KO8A 1PT1A 2R93A 4KODA 1CZ5A 1TMOA 2JIRA 1TWHA 1R7RA 3IR6A 1H0HA 2DMRA 5C1BA 4RV0A 2R92A 4DMRA 2E2HA 2Y0SA 5T5MD 4QIWA 1VC3B 3QQ7A 1FDIA 1S3SA 2JIOA 3GTGA 4KDLA 1DMRA 2YU9A 2NVYA 5EPPA 5FTJA 5FTNA 2C45A 4AOKB 4AYBA 3TM7B 3QQ8A 1PQHA 1Y5IA 2V3VA 2IV2X 1I3QA 5FTMA 2B63A 4AONB 2NVXA 1KQFA 5GLFA 1TWAA 3GTPA 2EEOB 1PYQA 2PJHB 1SFOA 4CRZA 3GTQA 1H5NA 1WCMA 1R27A 3TIWA 3CQZA 1EU1A 1QDNA 2VPZA 2E7ZA 3HU3A 1AA6A 3GTKA 1DMSA 1TWGA 1YLEA 2NYAA 4C2MA 1PQFA 2JIPA 5DYGA 3GTLA 1G8JA 1WLFA 1E60A
chains in the Genus database with same CATH superfamily
3DMRA 4KLNA 3X2MA 3QC8A 1PYUB 1BW4A 5H4UA 1PQEA 1R9TA 1FDOA 3SULA 3IR5A 2V45A 4GA6A 2VPWA 2JA6A 2WB1A 1SMYD 3CF2A 2PJJA 4JS7A 3H0GA 3M3GA 4GA5A 5DYIA 1I50A 1E61A 4FG4A 1AW8B 1PPYA 1E18A 1G8KA 2VPXA 2BH0A 4FG2A 4NOHA 3QWZA 3HKZA 1TWCA 1E32A 2PMZA 1UHEA 2BE5D 5FTKA 1E60A 3ENGA 5FTLA 1BW3A 3IR7A 1CR5A 3GTOA 1K83A 1CZ4A 3GTJA 1YNJD 3ML1A 4CS0A 2A6ED 5GLYA 1IW7D 2JA5A 1SIWA 3SUMA 3GTMA 2A6HD 2PNWA 2JIQA 1Y1VA 3SUKA 2B63A 2WAQA 2KI8A 3CZBA 3OUGA 1E5VA 4D7ZB 1TWFA 1PT0A 2VUMA 1Q16A 1OGYA 2YUJA 4JJOA 4AZDA 4CRYG 1Y1WA 1QCSA 3HU2A 1HD5A 3O5AA 5GM9A 3FKIA 5T5ID 1N10A 4AAYA 5B6CA 2JIMA 2JA7A 2PI8A 4KDIA 2NAPA 3SUJA 2E2IA 2R7ZA 2HCZX 3X2PA 5C18A 2VPYA 1UHDA 4L48A 3PLXB 1KQGA 3X2LA 1Y4ZA 3X2HA 3HU1A 4KO8A 1PT1A 3X2GA 2CW0D 2R93A 4KODA 4ZM7A 1CZ5A 1TMOA 2JIRA 1TWHA 1R7RA 2G5DA 3IR6A 2O5JD 1H0HA 2DMRA 1ZYRD 5C1BA 1WC2A 4RV0A 4DMRA 2R92A 2E2HA 2Y0SA 5T5MD 4QIWA 4ENGA 1VC3B 3QQ7A 1OA7A 1FDIA 1S3SA 2JIOA 3GTGA 4KDLA 1DMRA 2YU9A 4JCWA 2NVYA 5EPPA 1L8FA 5FTJA 5FTNA 2C45A 4AOKB 3X2NA 4AYBA 2PICA 3TM7B 3QQ8A 1ZC1A 4JP7A 3X2JA 2G6GA 1PQHA 1Y5IA 2KQAA 2V3VA 2IV2X 2ENGA 5FTMA 3X2IA 4AONB 1I3QA 2NVXA 1KQFA 5GLFA 1OA9A 1TWAA 3GTPA 2EEOB 1PYQA 2PJHB 2GAEA 1SFOA 4CRZA 3GTQA 1H5NA 1WCMA 1R27A 3X2OA 4FERA 3TIWA 3CQZA 4JP6A 3X2KA 2A68D 1EU1A 2AE0X 1QDNA 2VPZA 2E7ZA 3D30A 3HU3A 1AA6A 3GTKA 1DMSA 1TWGA 1YLEA 2NYAA 4FFTA 1PQFA 2JIPA 5DYGA 5GLXA 4AVRA 2A69D 4C2MA 3GTLA 1G8JA 1WLFA 1YNND
chains in the Genus database with same CATH topology
3DMRA 4KLNA 3QC8A 1PYUB 1PQEA 1R9TA 1FDOA 3IR5A 2V45A 4GA6A 2VPWA 2JA6A 2WB1A 1SMYD 3CF2A 2PJJA 3H0GA 4GA5A 5DYIA 1I50A 1E61A 1AW8B 1PPYA 1E18A 1G8KA 2VPXA 4NOHA 3QWZA 3HKZA 1TWCA 1E32A 2PMZA 1UHEA 2BE5D 5FTKA 1E60A 5FTLA 3IR7A 1CR5A 3GTOA 1K83A 1CZ4A 3GTJA 1YNJD 3ML1A 4CS0A 2A6ED 1IW7D 2JA5A 1SIWA 3GTMA 2A6HD 2PNWA 2JIQA 1Y1VA 2WAQA 2KI8A 3CZBA 3OUGA 1E5VA 4D7ZB 1TWFA 1PT0A 2VUMA 1Q16A 1OGYA 2YUJA 4CRYG 4AZDA 1Y1WA 1QCSA 3HU2A 4AAYA 3O5AA 3FKIA 5T5ID 5B6CA 2JIMA 2JA7A 2PI8A 4KDIA 2NAPA 2E2IA 2R7ZA 5C18A 2VPYA 1UHDA 3PLXB 1KQGA 1Y4ZA 3HU1A 4KO8A 1PT1A 2CW0D 2R93A 4KODA 1CZ5A 1TMOA 2JIRA 1TWHA 1R7RA 2G5DA 3IR6A 2O5JD 1H0HA 2DMRA 1ZYRD 5C1BA 4RV0A 2R92A 4DMRA 2E2HA 2Y0SA 5T5MD 4QIWA 1VC3B 3QQ7A 1FDIA 1S3SA 2JIOA 3GTGA 4KDLA 1DMRA 2YU9A 2NVYA 5EPPA 5FTJA 5FTNA 2C45A 4AOKB 4AYBA 2PICA 3TM7B 3QQ8A 1ZC1A 2G6GA 1PQHA 1Y5IA 2V3VA 2IV2X 1I3QA 5FTMA 2B63A 4AONB 2NVXA 1KQFA 5GLFA 1TWAA 3GTPA 2EEOB 1PYQA 2PJHB 2GAEA 1SFOA 4CRZA 3GTQA 1H5NA 1WCMA 1R27A 3TIWA 3CQZA 2A68D 1EU1A 2AE0X 1QDNA 2VPZA 2E7ZA 3HU3A 1AA6A 3GTKA 1DMSA 1TWGA 1YLEA 2NYAA 4C2MA 1PQFA 2JIPA 5DYGA 2A69D 3GTLA 1G8JA 1WLFA 1YNND
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DMR A;  4KLN A;  3QC8 A;  1PYU B;  1PQE A;  1R9T A;  1FDO A;  3IR5 A;  2V45 A;  4GA6 A;  2VPW A;  2JA6 A;  2WB1 A;  3CF2 A;  3H0G A;  4GA5 A;  5DYI A;  1I50 A;  1E61 A;  1AW8 B;  1PPY A;  1E18 A;  1G8K A;  2VPX A;  3QWZ A;  3HKZ A;  1TWC A;  1E32 A;  2PMZ A;  1UHE A;  5FTK A;  5FTL A;  3IR7 A;  1CR5 A;  3GTO A;  1K83 A;  1CZ4 A;  3GTJ A;  3ML1 A;  4CS0 A;  1IW7 D;  2JA5 A;  1SIW A;  3GTM A;  2JIQ A;  1Y1V A;  2WAQ A;  2KI8 A;  3OUG A;  1E5V A;  4D7Z B;  1TWF A;  1PT0 A;  2VUM A;  1Q16 A;  1OGY A;  4CRY G;  4AZD A;  1Y1W A;  1QCS A;  3HU2 A;  4AAY A;  3O5A A;  3FKI A;  5T5I D;  5B6C A;  2JIM A;  2JA7 A;  4KDI A;  2NAP A;  2E2I A;  2R7Z A;  5C18 A;  2VPY A;  1UHD A;  3PLX B;  1KQG A;  1Y4Z A;  3HU1 A;  4KO8 A;  1PT1 A;  2R93 A;  4KOD A;  1CZ5 A;  1TMO A;  2JIR A;  1TWH A;  1R7R A;  3IR6 A;  1H0H A;  2DMR A;  5C1B A;  4RV0 A;  2R92 A;  4DMR A;  2E2H A;  2Y0S A;  5T5M D;  4QIW A;  1VC3 B;  3QQ7 A;  1FDI A;  1S3S A;  2JIO A;  3GTG A;  4KDL A;  1DMR A;  2YU9 A;  2NVY A;  5EPP A;  5FTJ A;  5FTN A;  2C45 A;  4AOK B;  4AYB A;  3TM7 B;  3QQ8 A;  1PQH A;  1Y5I A;  2V3V A;  2IV2 X;  1I3Q A;  5FTM A;  2B63 A;  4AON B;  2NVX A;  1KQF A;  5GLF A;  1TWA A;  3GTP A;  2EEO B;  1PYQ A;  2PJH B;  1SFO A;  4CRZ A;  3GTQ A;  1H5N A;  1WCM A;  1R27 A;  3TIW A;  3CQZ A;  1EU1 A;  1QDN A;  2VPZ A;  2E7Z A;  3HU3 A;  1AA6 A;  3GTK A;  1DMS A;  1TWG A;  1YLE A;  2NYA A;  4C2M A;  1PQF A;  2JIP A;  5DYG A;  3GTL A;  1G8J A;  1WLF A;  1E60 A; 
#chains in the Genus database with same CATH topology
 3DMR A;  4KLN A;  3X2M A;  3QC8 A;  1PYU B;  1BW4 A;  5H4U A;  1PQE A;  1R9T A;  1FDO A;  3SUL A;  3IR5 A;  2V45 A;  4GA6 A;  2VPW A;  2JA6 A;  2WB1 A;  1SMY D;  3CF2 A;  2PJJ A;  4JS7 A;  3H0G A;  3M3G A;  4GA5 A;  5DYI A;  1I50 A;  1E61 A;  4FG4 A;  1AW8 B;  1PPY A;  1E18 A;  1G8K A;  2VPX A;  2BH0 A;  4FG2 A;  4NOH A;  3QWZ A;  3HKZ A;  1TWC A;  1E32 A;  2PMZ A;  1UHE A;  2BE5 D;  5FTK A;  1E60 A;  3ENG A;  5FTL A;  1BW3 A;  3IR7 A;  1CR5 A;  3GTO A;  1K83 A;  1CZ4 A;  3GTJ A;  1YNJ D;  3ML1 A;  4CS0 A;  2A6E D;  5GLY A;  1IW7 D;  2JA5 A;  1SIW A;  3SUM A;  3GTM A;  2A6H D;  2PNW A;  2JIQ A;  1Y1V A;  3SUK A;  2B63 A;  2WAQ A;  2KI8 A;  3CZB A;  3OUG A;  1E5V A;  4D7Z B;  1TWF A;  1PT0 A;  2VUM A;  1Q16 A;  1OGY A;  2YUJ A;  4JJO A;  4AZD A;  4CRY G;  1Y1W A;  1QCS A;  3HU2 A;  1HD5 A;  3O5A A;  5GM9 A;  3FKI A;  5T5I D;  1N10 A;  4AAY A;  5B6C A;  2JIM A;  2JA7 A;  2PI8 A;  4KDI A;  2NAP A;  3SUJ A;  2E2I A;  2R7Z A;  2HCZ X;  3X2P A;  5C18 A;  2VPY A;  1UHD A;  4L48 A;  3PLX B;  1KQG A;  3X2L A;  1Y4Z A;  3X2H A;  3HU1 A;  4KO8 A;  1PT1 A;  3X2G A;  2CW0 D;  2R93 A;  4KOD A;  4ZM7 A;  1CZ5 A;  1TMO A;  2JIR A;  1TWH A;  1R7R A;  2G5D A;  3IR6 A;  2O5J D;  1H0H A;  2DMR A;  1ZYR D;  5C1B A;  1WC2 A;  4RV0 A;  4DMR A;  2R92 A;  2E2H A;  2Y0S A;  5T5M D;  4QIW A;  4ENG A;  1VC3 B;  3QQ7 A;  1OA7 A;  1FDI A;  1S3S A;  2JIO A;  3GTG A;  4KDL A;  1DMR A;  2YU9 A;  4JCW A;  2NVY A;  5EPP A;  1L8F A;  5FTJ A;  5FTN A;  2C45 A;  4AOK B;  3X2N A;  4AYB A;  2PIC A;  3TM7 B;  3QQ8 A;  1ZC1 A;  4JP7 A;  3X2J A;  2G6G A;  1PQH A;  1Y5I A;  2KQA A;  2V3V A;  2IV2 X;  2ENG A;  5FTM A;  3X2I A;  4AON B;  1I3Q A;  2NVX A;  1KQF A;  5GLF A;  1OA9 A;  1TWA A;  3GTP A;  2EEO B;  1PYQ A;  2PJH B;  2GAE A;  1SFO A;  4CRZ A;  3GTQ A;  1H5N A;  1WCM A;  1R27 A;  3X2O A;  4FER A;  3TIW A;  3CQZ A;  4JP6 A;  3X2K A;  2A68 D;  1EU1 A;  2AE0 X;  1QDN A;  2VPZ A;  2E7Z A;  3D30 A;  3HU3 A;  1AA6 A;  3GTK A;  1DMS A;  1TWG A;  1YLE A;  2NYA A;  4FFT A;  1PQF A;  2JIP A;  5DYG A;  5GLX A;  4AVR A;  2A69 D;  4C2M A;  3GTL A;  1G8J A;  1WLF A;  1YNN D; 
#chains in the Genus database with same CATH homology
 3DMR A;  4KLN A;  3QC8 A;  1PYU B;  1PQE A;  1R9T A;  1FDO A;  3IR5 A;  2V45 A;  4GA6 A;  2VPW A;  2JA6 A;  2WB1 A;  1SMY D;  3CF2 A;  2PJJ A;  3H0G A;  4GA5 A;  5DYI A;  1I50 A;  1E61 A;  1AW8 B;  1PPY A;  1E18 A;  1G8K A;  2VPX A;  4NOH A;  3QWZ A;  3HKZ A;  1TWC A;  1E32 A;  2PMZ A;  1UHE A;  2BE5 D;  5FTK A;  1E60 A;  5FTL A;  3IR7 A;  1CR5 A;  3GTO A;  1K83 A;  1CZ4 A;  3GTJ A;  1YNJ D;  3ML1 A;  4CS0 A;  2A6E D;  1IW7 D;  2JA5 A;  1SIW A;  3GTM A;  2A6H D;  2PNW A;  2JIQ A;  1Y1V A;  2WAQ A;  2KI8 A;  3CZB A;  3OUG A;  1E5V A;  4D7Z B;  1TWF A;  1PT0 A;  2VUM A;  1Q16 A;  1OGY A;  2YUJ A;  4CRY G;  4AZD A;  1Y1W A;  1QCS A;  3HU2 A;  4AAY A;  3O5A A;  3FKI A;  5T5I D;  5B6C A;  2JIM A;  2JA7 A;  2PI8 A;  4KDI A;  2NAP A;  2E2I A;  2R7Z A;  5C18 A;  2VPY A;  1UHD A;  3PLX B;  1KQG A;  1Y4Z A;  3HU1 A;  4KO8 A;  1PT1 A;  2CW0 D;  2R93 A;  4KOD A;  1CZ5 A;  1TMO A;  2JIR A;  1TWH A;  1R7R A;  2G5D A;  3IR6 A;  2O5J D;  1H0H A;  2DMR A;  1ZYR D;  5C1B A;  4RV0 A;  2R92 A;  4DMR A;  2E2H A;  2Y0S A;  5T5M D;  4QIW A;  1VC3 B;  3QQ7 A;  1FDI A;  1S3S A;  2JIO A;  3GTG A;  4KDL A;  1DMR A;  2YU9 A;  2NVY A;  5EPP A;  5FTJ A;  5FTN A;  2C45 A;  4AOK B;  4AYB A;  2PIC A;  3TM7 B;  3QQ8 A;  1ZC1 A;  2G6G A;  1PQH A;  1Y5I A;  2V3V A;  2IV2 X;  1I3Q A;  5FTM A;  2B63 A;  4AON B;  2NVX A;  1KQF A;  5GLF A;  1TWA A;  3GTP A;  2EEO B;  1PYQ A;  2PJH B;  2GAE A;  1SFO A;  4CRZ A;  3GTQ A;  1H5N A;  1WCM A;  1R27 A;  3TIW A;  3CQZ A;  2A68 D;  1EU1 A;  2AE0 X;  1QDN A;  2VPZ A;  2E7Z A;  3HU3 A;  1AA6 A;  3GTK A;  1DMS A;  1TWG A;  1YLE A;  2NYA A;  4C2M A;  1PQF A;  2JIP A;  5DYG A;  2A69 D;  3GTL A;  1G8J A;  1WLF A;  1YNN D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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