3X2OA

Neutron and x-ray joint refined structure of pccel45a apo form at 298k.
Total Genus 49
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
180
structure length
179
Chain Sequence
ATGGYVQQATGQASFTMYSGCGSPACGKAASGFTAAINQLAFGSAPGLGAGDACGRCFALTGNHDPYSPNYTGPFGQTIVVKVTDLCPVQGQEFCGQTTSNPTNQHGMPFHFDICEDTGGSAKFFPSGHGALTGTFTEVSCSQWSGSDGGQLWNGACLSGETAPNWPSTACGNKGTAPS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords Endoglucanase V-like protein
publication title Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
doi rcsb
source organism Phanerochaete chrysosporium
total genus 49
structure length 179
sequence length 180
ec nomenclature
pdb deposition date 2014-12-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 3x2oA00
3M3GA 4JP6A 4JCWA 4FFTA 3X2KA 1OA9A 1HD5A 3SUKA 1BW3A 3X2OA 3X2LA 4JP7A 2AE0X 4FERA 4AVRA 1L8FA 4FG2A 2PICA 2BH0A 3X2IA 2G5DA 3X2HA 5GM9A 2HCZX 2PNWA 2PJJA 4L48A 3CZBA 3X2PA 2PI8A 1BW4A 3D30A 4JS7A 2G6GA 4FG4A 3X2JA 3SULA 3SUMA 5H4UA 4ENGA 5GLXA 5GLYA 1OA7A 1N10A 3X2NA 3X2MA 3SUJA 4ZM7A 2KQAA 2GAEA 4JJOA 3X2GA 2ENGA 3ENGA 1WC2A
chains in the Genus database with same CATH superfamily
3M3GA 3IR7A 2YUJA 4FFTA 5T5ID 1OA9A 3O5AA 4KDIA 1KQFA 2BE5D 3X2OA 1SIWA 1WLFA 3CF2A 4JP7A 4AAYA 4KODA 1L8FA 1H0HA 4L48A 2YU9A 1TWGA 5FTMA 3TIWA 3D30A 2JIMA 4RV0A 1PT0A 2G6GA 3X2JA 1Q16A 3CQZA 3SULA 5H4UA 3FKIA 1R9TA 2E2HA 1E32A 1FDIA 1PT1A 2NYAA 2E2IA 3X2NA 2R7ZA 2JIRA 2JIOA 3QQ8A 3QQ7A 5B6CA 2JA6A 1TWCA 4AONB 2VPYA 3GTQA 1PQFA 3ENGA 1WC2A 1SMYD 1PQHA 2WAQA 2VPZA 4KDLA 1I3QA 2E7ZA 1BW3A 1E61A 1K83A 2AE0X 2PJHB 2A68D 3QC8A 1QCSA 2EEOB 2PMZA 3HU2A 5DYGA 2G5DA 2JIQA 1S3SA 2NVXA 3CZBA 5FTKA 2PI8A 2Y0SA 1DMRA 1FDOA 3DMRA 4GA5A 3GTMA 3OUGA 4JS7A 4QIWA 2WB1A 1YLEA 1IW7D 2V3VA 1G8JA 3GTKA 3HU3A 5GLXA 1UHEA 1Y5IA 1PYUB 3X2MA 2NVYA 1E18A 3SUJA 1PQEA 3H0GA 2ENGA 3TM7B 1AA6A 1ZC1A 4JP6A 2A6HD 4JCWA 3GTLA 1E60A 1YNND 2DMRA 5T5MD 3SUKA 3X2KA 4DMRA 3X2LA 1Y1WA 4FERA 1WCMA 2JIPA 5C1BA 4AVRA 1Y4ZA 4GA6A 2JA7A 1KQGA 3GTPA 4AOKB 2PICA 2BH0A 3X2HA 4AYBA 3IR5A 5C18A 2HCZX 2PNWA 2A6ED 2PJJA 1BW4A 2VPWA 4FG4A 2IV2X 1CZ5A 1DMSA 4ENGA 4CS0A 1VC3B 2JA5A 5GLFA 3QWZA 1OGYA 1G8KA 3GTGA 1PYQA 1CR5A 1PPYA 1TWAA 3X2GA 2KI8A 4JJOA 1Y1VA 1CZ4A 5DYIA 1AW8B 1HD5A 2VPXA 2R92A 2C45A 1E5VA 2VUMA 2O5JD 4D7ZB 1R7RA 4FG2A 2A69D 2NAPA 2CW0D 5FTNA 4NOHA 3X2IA 1ZYRD 5GM9A 1H5NA 3X2PA 4AZDA 4CRZA 5FTLA 1QDNA 3ML1A 1UHDA 5EPPA 3SUMA 2R93A 4KO8A 5GLYA 1I50A 1EU1A 1OA7A 2V45A 1N10A 1TWHA 3HKZA 3IR6A 3PLXB 4KLNA 4CRYG 2B63A 3HU1A 1TWFA 1YNJD 1R27A 4C2MA 3GTJA 4ZM7A 2KQAA 1SFOA 3GTOA 2GAEA 5FTJA 1TMOA
chains in the Genus database with same CATH topology
3M3GA 4JP6A 4JCWA 4FFTA 3X2KA 1OA9A 1HD5A 3SUKA 1BW3A 3X2OA 3X2LA 4JP7A 2AE0X 4FERA 4AVRA 1L8FA 4FG2A 2PICA 2BH0A 3X2IA 2G5DA 3X2HA 5GM9A 2HCZX 2PNWA 2PJJA 4L48A 3CZBA 3X2PA 2PI8A 1BW4A 3D30A 4JS7A 2G6GA 4FG4A 3X2JA 3SULA 3SUMA 5H4UA 4ENGA 5GLXA 5GLYA 1OA7A 1N10A 3X2NA 3X2MA 3SUJA 4ZM7A 2KQAA 2GAEA 4JJOA 3X2GA 2ENGA 3ENGA 1WC2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3M3G A;  4JP6 A;  4JCW A;  4FFT A;  3X2K A;  1OA9 A;  1HD5 A;  3SUK A;  1BW3 A;  3X2O A;  3X2L A;  4JP7 A;  2AE0 X;  4FER A;  4AVR A;  1L8F A;  4FG2 A;  2PIC A;  2BH0 A;  3X2I A;  2G5D A;  3X2H A;  5GM9 A;  2HCZ X;  2PNW A;  2PJJ A;  4L48 A;  3CZB A;  3X2P A;  2PI8 A;  1BW4 A;  3D30 A;  4JS7 A;  2G6G A;  4FG4 A;  3X2J A;  3SUL A;  3SUM A;  5H4U A;  4ENG A;  5GLX A;  5GLY A;  1OA7 A;  1N10 A;  3X2N A;  3X2M A;  3SUJ A;  4ZM7 A;  2KQA A;  2GAE A;  4JJO A;  3X2G A;  2ENG A;  3ENG A;  1WC2 A; 
#chains in the Genus database with same CATH topology
 3M3G A;  3IR7 A;  2YUJ A;  4FFT A;  5T5I D;  1OA9 A;  3O5A A;  4KDI A;  1KQF A;  2BE5 D;  3X2O A;  1SIW A;  1WLF A;  3CF2 A;  4JP7 A;  4AAY A;  4KOD A;  1L8F A;  1H0H A;  4L48 A;  2YU9 A;  1TWG A;  5FTM A;  3TIW A;  3D30 A;  2JIM A;  4RV0 A;  1PT0 A;  2G6G A;  3X2J A;  1Q16 A;  3CQZ A;  3SUL A;  5H4U A;  3FKI A;  1R9T A;  2E2H A;  1E32 A;  1FDI A;  1PT1 A;  2NYA A;  2E2I A;  3X2N A;  2R7Z A;  2JIR A;  2JIO A;  3QQ8 A;  3QQ7 A;  5B6C A;  2JA6 A;  1TWC A;  4AON B;  2VPY A;  3GTQ A;  1PQF A;  3ENG A;  1WC2 A;  1SMY D;  1PQH A;  2WAQ A;  2VPZ A;  4KDL A;  1I3Q A;  2E7Z A;  1BW3 A;  1E61 A;  1K83 A;  2AE0 X;  2PJH B;  2A68 D;  3QC8 A;  1QCS A;  2EEO B;  2PMZ A;  3HU2 A;  5DYG A;  2G5D A;  2JIQ A;  1S3S A;  2NVX A;  3CZB A;  5FTK A;  2PI8 A;  2Y0S A;  1DMR A;  1FDO A;  3DMR A;  4GA5 A;  3GTM A;  3OUG A;  4JS7 A;  4QIW A;  2WB1 A;  1YLE A;  1IW7 D;  2V3V A;  1G8J A;  3GTK A;  3HU3 A;  5GLX A;  1UHE A;  1Y5I A;  1PYU B;  3X2M A;  2NVY A;  1E18 A;  3SUJ A;  1PQE A;  3H0G A;  2ENG A;  3TM7 B;  1AA6 A;  1ZC1 A;  4JP6 A;  2A6H D;  4JCW A;  3GTL A;  1E60 A;  1YNN D;  2DMR A;  5T5M D;  3SUK A;  3X2K A;  4DMR A;  3X2L A;  1Y1W A;  4FER A;  1WCM A;  2JIP A;  5C1B A;  4AVR A;  1Y4Z A;  4GA6 A;  2JA7 A;  1KQG A;  3GTP A;  4AOK B;  2PIC A;  2BH0 A;  3X2H A;  4AYB A;  3IR5 A;  5C18 A;  2HCZ X;  2PNW A;  2A6E D;  2PJJ A;  1BW4 A;  2VPW A;  4FG4 A;  2IV2 X;  1CZ5 A;  1DMS A;  4ENG A;  4CS0 A;  1VC3 B;  2JA5 A;  5GLF A;  3QWZ A;  1OGY A;  1G8K A;  3GTG A;  1PYQ A;  1CR5 A;  1PPY A;  1TWA A;  3X2G A;  2KI8 A;  4JJO A;  1Y1V A;  1CZ4 A;  5DYI A;  1AW8 B;  1HD5 A;  2VPX A;  2R92 A;  2C45 A;  1E5V A;  2VUM A;  2O5J D;  4D7Z B;  1R7R A;  4FG2 A;  2A69 D;  2NAP A;  2CW0 D;  5FTN A;  4NOH A;  3X2I A;  1ZYR D;  5GM9 A;  1H5N A;  3X2P A;  4AZD A;  4CRZ A;  5FTL A;  1QDN A;  3ML1 A;  1UHD A;  5EPP A;  3SUM A;  2R93 A;  4KO8 A;  5GLY A;  1I50 A;  1EU1 A;  1OA7 A;  2V45 A;  1N10 A;  1TWH A;  3HKZ A;  3IR6 A;  3PLX B;  4KLN A;  4CRY G;  2B63 A;  3HU1 A;  1TWF A;  1YNJ D;  1R27 A;  4C2M A;  3GTJ A;  4ZM7 A;  2KQA A;  1SFO A;  3GTO A;  2GAE A;  5FTJ A;  1TMO A; 
#chains in the Genus database with same CATH homology
 3M3G A;  4JP6 A;  4JCW A;  4FFT A;  3X2K A;  1OA9 A;  1HD5 A;  3SUK A;  1BW3 A;  3X2O A;  3X2L A;  4JP7 A;  2AE0 X;  4FER A;  4AVR A;  1L8F A;  4FG2 A;  2PIC A;  2BH0 A;  3X2I A;  2G5D A;  3X2H A;  5GM9 A;  2HCZ X;  2PNW A;  2PJJ A;  4L48 A;  3CZB A;  3X2P A;  2PI8 A;  1BW4 A;  3D30 A;  4JS7 A;  2G6G A;  4FG4 A;  3X2J A;  3SUL A;  3SUM A;  5H4U A;  4ENG A;  5GLX A;  5GLY A;  1OA7 A;  1N10 A;  3X2N A;  3X2M A;  3SUJ A;  4ZM7 A;  2KQA A;  2GAE A;  4JJO A;  3X2G A;  2ENG A;  3ENG A;  1WC2 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...