3X2OA

Neutron and x-ray joint refined structure of pccel45a apo form at 298k.
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
180
structure length
179
Chain Sequence
ATGGYVQQATGQASFTMYSGCGSPACGKAASGFTAAINQLAFGSAPGLGAGDACGRCFALTGNHDPYSPNYTGPFGQTIVVKVTDLCPVQGQEFCGQTTSNPTNQHGMPFHFDICEDTGGSAKFFPSGHGALTGTFTEVSCSQWSGSDGGQLWNGACLSGETAPNWPSTACGNKGTAPS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Endoglucanase V-like protein
publication title Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
doi rcsb
source organism Phanerochaete chrysosporium
total genus 49
structure length 179
sequence length 180
ec nomenclature
pdb deposition date 2014-12-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 3x2oA00
4FFTA 3D30A 4JS7A 3X2NA 4L48A 3M3GA 3X2LA 2PNWA 3X2OA 4FG2A 3ENGA 1HD5A 2G6GA 1N10A 2GAEA 4FERA 4AVRA 1BW3A 1WC2A 1OA7A 4ENGA 1OA9A 3CZBA 4JP6A 3X2PA 2G5DA 5H4UA 2AE0X 4JJOA 5GLXA 3SUMA 3X2KA 2HCZX 4ZM7A 3SUJA 3X2GA 5GM9A 3X2HA 2PJJA 2PICA 1BW4A 1L8FA 2KQAA 4FG4A 4JCWA 4JP7A 3SULA 3SUKA 3X2IA 2ENGA 3X2JA 2BH0A 2PI8A 5GLYA 3X2MA
chains in the Genus database with same CATH superfamily
1ZYRD 1CZ4A 4KODA 4JS7A 3HKZA 1Y1VA 1R9TA 1E61A 2R93A 2JIMA 3GTGA 1DMRA 4FG2A 3ENGA 3IR7A 1E60A 4AYBA 2JIOA 2O5JD 1PQHA 4AVRA 1G8JA 1TWHA 4CRZA 1QDNA 3X2PA 1H5NA 2G5DA 1S3SA 4RV0A 3GTPA 4CS0A 1YLEA 5GLXA 2JIRA 3SUMA 2YUJA 1TWGA 5DYGA 1WCMA 2A6ED 3CQZA 1UHEA 3GTMA 2CW0D 2E7ZA 2PICA 1BW4A 2BE5D 4JCWA 4JP7A 4KLNA 1Y5IA 3X2IA 1I50A 3X2JA 2A69D 2PI8A 2WAQA 2IV2X 2VPZA 3FKIA 2E2IA 2VPXA 1TWAA 2JA5A 1OGYA 2VUMA 3TM7B 3HU1A 1YNJD 1QCSA 2VPWA 1YNND 4AONB 3TIWA 3DMRA 2YU9A 1E32A 1OA9A 3CF2A 1PQEA 5H4UA 1E18A 2AE0X 4NOHA 3GTLA 1Y4ZA 4JJOA 4AZDA 3X2KA 1TWCA 4CRYG 1VC3B 3X2GA 1PT1A 1TWFA 3GTKA 2PMZA 1SFOA 2DMRA 3SULA 3SUKA 2WB1A 2ENGA 1EU1A 1CZ5A 1PYQA 1AW8B 2HCZX 3X2LA 1WLFA 1K83A 3H0GA 4FFTA 4KO8A 3X2NA 3GTQA 2NVXA 3M3GA 1UHDA 2A6HD 5GLFA 1Y1WA 3ML1A 4DMRA 5FTKA 1PPYA 2KI8A 2VPYA 3OUGA 2G6GA 1N10A 5FTMA 3GTJA 2JA7A 2Y0SA 1I3QA 4KDLA 1FDOA 1WC2A 5T5MD 4ENGA 1G8KA 3CZBA 3QWZA 1TMOA 5DYIA 1PQFA 1PT0A 1IW7D 3SUJA 3GTOA 2C45A 2JA6A 2R7ZA 5EPPA 3IR5A 1L8FA 2KQAA 4FG4A 2R92A 4GA5A 5C1BA 1KQGA 3QQ7A 5FTNA 5GLYA 1R27A 3X2MA 3HU2A 5C18A 4QIWA 1AA6A 3D30A 3IR6A 4L48A 1H0HA 2NYAA 2V45A 2EEOB 2PNWA 2V3VA 3QC8A 3X2OA 4D7ZB 1KQFA 1HD5A 4AOKB 2GAEA 4FERA 2NAPA 1R7RA 1PYUB 2E2HA 1BW3A 1DMSA 1OA7A 2JIPA 2JIQA 4JP6A 5B6CA 1FDIA 2NVYA 2A68D 3HU3A 5T5ID 1ZC1A 4ZM7A 5FTLA 2B63A 3PLXB 4GA6A 5GM9A 1SMYD 3O5AA 2PJJA 5FTJA 3X2HA 1CR5A 4KDIA 4C2MA 4AAYA 1Q16A 2BH0A 2PJHB 1SIWA 1E5VA 3QQ8A
chains in the Genus database with same CATH topology
4FFTA 3D30A 4JS7A 3X2NA 4L48A 3M3GA 3X2LA 2PNWA 3X2OA 4FG2A 3ENGA 1HD5A 2G6GA 1N10A 2GAEA 4FERA 4AVRA 1BW3A 1WC2A 1OA7A 4ENGA 1OA9A 3CZBA 4JP6A 3X2PA 2G5DA 5H4UA 2AE0X 4JJOA 5GLXA 3SUMA 3X2KA 2HCZX 4ZM7A 3SUJA 3X2GA 5GM9A 3X2HA 2PJJA 2PICA 1BW4A 1L8FA 2KQAA 4FG4A 4JCWA 4JP7A 3SULA 3SUKA 3X2IA 2ENGA 3X2JA 2BH0A 2PI8A 5GLYA 3X2MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FFT A;  3D30 A;  4JS7 A;  3X2N A;  4L48 A;  3M3G A;  3X2L A;  2PNW A;  3X2O A;  4FG2 A;  3ENG A;  1HD5 A;  2G6G A;  1N10 A;  2GAE A;  4FER A;  4AVR A;  1BW3 A;  1WC2 A;  1OA7 A;  4ENG A;  1OA9 A;  3CZB A;  4JP6 A;  3X2P A;  2G5D A;  5H4U A;  2AE0 X;  4JJO A;  5GLX A;  3SUM A;  3X2K A;  2HCZ X;  4ZM7 A;  3SUJ A;  3X2G A;  5GM9 A;  3X2H A;  2PJJ A;  2PIC A;  1BW4 A;  1L8F A;  2KQA A;  4FG4 A;  4JCW A;  4JP7 A;  3SUL A;  3SUK A;  3X2I A;  2ENG A;  3X2J A;  2BH0 A;  2PI8 A;  5GLY A;  3X2M A; 
#chains in the Genus database with same CATH topology
 1ZYR D;  1CZ4 A;  4KOD A;  4JS7 A;  3HKZ A;  1Y1V A;  1R9T A;  1E61 A;  2R93 A;  2JIM A;  3GTG A;  1DMR A;  4FG2 A;  3ENG A;  3IR7 A;  1E60 A;  4AYB A;  2JIO A;  2O5J D;  1PQH A;  4AVR A;  1G8J A;  1TWH A;  4CRZ A;  1QDN A;  3X2P A;  1H5N A;  2G5D A;  1S3S A;  4RV0 A;  3GTP A;  4CS0 A;  1YLE A;  5GLX A;  2JIR A;  3SUM A;  2YUJ A;  1TWG A;  5DYG A;  1WCM A;  2A6E D;  3CQZ A;  1UHE A;  3GTM A;  2CW0 D;  2E7Z A;  2PIC A;  1BW4 A;  2BE5 D;  4JCW A;  4JP7 A;  4KLN A;  1Y5I A;  3X2I A;  1I50 A;  3X2J A;  2A69 D;  2PI8 A;  2WAQ A;  2IV2 X;  2VPZ A;  3FKI A;  2E2I A;  2VPX A;  1TWA A;  2JA5 A;  1OGY A;  2VUM A;  3TM7 B;  3HU1 A;  1YNJ D;  1QCS A;  2VPW A;  1YNN D;  4AON B;  3TIW A;  3DMR A;  2YU9 A;  1E32 A;  1OA9 A;  3CF2 A;  1PQE A;  5H4U A;  1E18 A;  2AE0 X;  4NOH A;  3GTL A;  1Y4Z A;  4JJO A;  4AZD A;  3X2K A;  1TWC A;  4CRY G;  1VC3 B;  3X2G A;  1PT1 A;  1TWF A;  3GTK A;  2PMZ A;  1SFO A;  2DMR A;  3SUL A;  3SUK A;  2WB1 A;  2ENG A;  1EU1 A;  1CZ5 A;  1PYQ A;  1AW8 B;  2HCZ X;  3X2L A;  1WLF A;  1K83 A;  3H0G A;  4FFT A;  4KO8 A;  3X2N A;  3GTQ A;  2NVX A;  3M3G A;  1UHD A;  2A6H D;  5GLF A;  1Y1W A;  3ML1 A;  4DMR A;  5FTK A;  1PPY A;  2KI8 A;  2VPY A;  3OUG A;  2G6G A;  1N10 A;  5FTM A;  3GTJ A;  2JA7 A;  2Y0S A;  1I3Q A;  4KDL A;  1FDO A;  1WC2 A;  5T5M D;  4ENG A;  1G8K A;  3CZB A;  3QWZ A;  1TMO A;  5DYI A;  1PQF A;  1PT0 A;  1IW7 D;  3SUJ A;  3GTO A;  2C45 A;  2JA6 A;  2R7Z A;  5EPP A;  3IR5 A;  1L8F A;  2KQA A;  4FG4 A;  2R92 A;  4GA5 A;  5C1B A;  1KQG A;  3QQ7 A;  5FTN A;  5GLY A;  1R27 A;  3X2M A;  3HU2 A;  5C18 A;  4QIW A;  1AA6 A;  3D30 A;  3IR6 A;  4L48 A;  1H0H A;  2NYA A;  2V45 A;  2EEO B;  2PNW A;  2V3V A;  3QC8 A;  3X2O A;  4D7Z B;  1KQF A;  1HD5 A;  4AOK B;  2GAE A;  4FER A;  2NAP A;  1R7R A;  1PYU B;  2E2H A;  1BW3 A;  1DMS A;  1OA7 A;  2JIP A;  2JIQ A;  4JP6 A;  5B6C A;  1FDI A;  2NVY A;  2A68 D;  3HU3 A;  5T5I D;  1ZC1 A;  4ZM7 A;  5FTL A;  2B63 A;  3PLX B;  4GA6 A;  5GM9 A;  1SMY D;  3O5A A;  2PJJ A;  5FTJ A;  3X2H A;  1CR5 A;  4KDI A;  4C2M A;  4AAY A;  1Q16 A;  2BH0 A;  2PJH B;  1SIW A;  1E5V A;  3QQ8 A; 
#chains in the Genus database with same CATH homology
 4FFT A;  3D30 A;  4JS7 A;  3X2N A;  4L48 A;  3M3G A;  3X2L A;  2PNW A;  3X2O A;  4FG2 A;  3ENG A;  1HD5 A;  2G6G A;  1N10 A;  2GAE A;  4FER A;  4AVR A;  1BW3 A;  1WC2 A;  1OA7 A;  4ENG A;  1OA9 A;  3CZB A;  4JP6 A;  3X2P A;  2G5D A;  5H4U A;  2AE0 X;  4JJO A;  5GLX A;  3SUM A;  3X2K A;  2HCZ X;  4ZM7 A;  3SUJ A;  3X2G A;  5GM9 A;  3X2H A;  2PJJ A;  2PIC A;  1BW4 A;  1L8F A;  2KQA A;  4FG4 A;  4JCW A;  4JP7 A;  3SUL A;  3SUK A;  3X2I A;  2ENG A;  3X2J A;  2BH0 A;  2PI8 A;  5GLY A;  3X2M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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