3X2OA

Neutron and x-ray joint refined structure of pccel45a apo form at 298k.
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
180
structure length
179
Chain Sequence
ATGGYVQQATGQASFTMYSGCGSPACGKAASGFTAAINQLAFGSAPGLGAGDACGRCFALTGNHDPYSPNYTGPFGQTIVVKVTDLCPVQGQEFCGQTTSNPTNQHGMPFHFDICEDTGGSAKFFPSGHGALTGTFTEVSCSQWSGSDGGQLWNGACLSGETAPNWPSTACGNKGTAPS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Endoglucanase V-like protein
publication title Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
doi rcsb
source organism Phanerochaete chrysosporium
molecule tags Hydrolase
total genus 49
structure length 179
sequence length 180
ec nomenclature
pdb deposition date 2014-12-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 3x2oA00
1N10A 3X2PA 4FERA 3CZBA 4FFTA 3X2JA 2BH0A 3M3GA 3SULA 5GM9A 4JS7A 3SUJA 4AVRA 1BW3A 2KQAA 2G6GA 2PNWA 1HD5A 3X2LA 2PICA 4ZM7A 3X2IA 1WC2A 3D30A 4FG2A 1OA9A 3X2OA 4JJOA 2PJJA 4JP6A 5GLYA 5GLXA 3X2HA 2G5DA 3SUKA 1L8FA 2GAEA 3X2MA 5H4UA 3SUMA 3X2KA 2HCZX 3X2NA 1BW4A 2PI8A 4L48A 4JP7A 2ENGA 3X2GA 4ENGA 1OA7A 3ENGA 2AE0X 4FG4A 4JCWA
chains in the Genus database with same CATH superfamily
3X2PA 1Y4ZA 3IR6A 1FDIA 2PMZA 3TIWA 1VC3B 1YNND 3O5AA 4C2MA 3SUJA 1UHDA 1TWGA 3OUGA 1WCMA 1I50A 1TWCA 1QDNA 2VPXA 2NVYA 5DYGA 2C45A 1PYUB 2PICA 3X2LA 4ZM7A 2JIQA 3X2OA 2WB1A 1FDOA 4JJOA 5GLXA 1R27A 3IR5A 1R9TA 4CRZA 2VPWA 1Y1VA 3H0GA 3X2MA 2VPZA 5B6CA 4AAYA 5C1BA 2JIPA 2YUJA 4AONB 3QQ7A 2R7ZA 3X2KA 5EPPA 1UHEA 1PT0A 1YLEA 2ENGA 3GTQA 3X2GA 1ZC1A 1Y5IA 2PJHB 1DMSA 2WAQA 4JCWA 2V45A 3GTGA 3TM7B 4AYBA 4FERA 4FFTA 4AZDA 1K83A 3SULA 5GM9A 2JA5A 1BW3A 2G6GA 1AW8B 1SIWA 2DMRA 5FTNA 2A6ED 3ML1A 4AOKB 2JA7A 1S3SA 1E61A 1WC2A 1OGYA 1DMRA 5GLYA 3X2HA 2BE5D 5DYIA 5H4UA 1G8JA 1TWAA 1TMOA 2PI8A 4L48A 3GTMA 1KQFA 2R93A 3GTPA 3CQZA 5T5MD 1KQGA 1PQHA 1YNJD 2JIOA 2A68D 1IW7D 1N10A 1E60A 4KDLA 5FTLA 3QQ8A 3X2JA 3M3GA 2IV2X 4JS7A 1TWHA 1CR5A 2E7ZA 2KQAA 3HU3A 3QWZA 1G8KA 2PNWA 1HD5A 4KODA 1PPYA 1Y1WA 2CW0D 2KI8A 3X2IA 4CRYG 1H0HA 3GTKA 2V3VA 3IR7A 1QCSA 4FG2A 1H5NA 2A69D 3HU2A 2YU9A 1WLFA 5C18A 2G5DA 1AA6A 2JIRA 1L8FA 1ZYRD 4KO8A 3SUKA 3SUMA 3FKIA 1BW4A 3X2NA 1TWFA 2JA6A 4DMRA 1E18A 4JP7A 1OA7A 2JIMA 2R92A 2AE0X 2Y0SA 5T5ID 3PLXB 3GTJA 3CZBA 4QIWA 1R7RA 2BH0A 2O5JD 1E5VA 2NAPA 4AVRA 4RV0A 1Q16A 4GA5A 4NOHA 1PYQA 5GLFA 2EEOB 2VPYA 1I3QA 3HU1A 1PT1A 1SFOA 3GTLA 1PQEA 3D30A 1OA9A 3CF2A 3HKZA 3QC8A 4JP6A 2PJJA 4GA6A 1SMYD 2GAEA 2A6HD 4KDIA 5FTMA 2E2HA 2E2IA 2NVXA 5FTJA 1E32A 2HCZX 5FTKA 3DMRA 4KLNA 3GTOA 1CZ4A 1PQFA 2B63A 4D7ZB 4ENGA 2VUMA 1EU1A 3ENGA 2NYAA 1CZ5A 4FG4A 4CS0A
chains in the Genus database with same CATH topology
1N10A 3X2PA 4FERA 3CZBA 4FFTA 3X2JA 2BH0A 3M3GA 3SULA 5GM9A 4JS7A 3SUJA 4AVRA 1BW3A 2KQAA 2G6GA 2PNWA 1HD5A 3X2LA 2PICA 4ZM7A 3X2IA 1WC2A 3D30A 4FG2A 1OA9A 3X2OA 4JJOA 2PJJA 4JP6A 5GLYA 5GLXA 3X2HA 2G5DA 3SUKA 1L8FA 2GAEA 3X2MA 5H4UA 3SUMA 3X2KA 2HCZX 3X2NA 1BW4A 2PI8A 4L48A 4JP7A 2ENGA 3X2GA 4ENGA 1OA7A 3ENGA 2AE0X 4FG4A 4JCWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N10 A;  3X2P A;  4FER A;  3CZB A;  4FFT A;  3X2J A;  2BH0 A;  3M3G A;  3SUL A;  5GM9 A;  4JS7 A;  3SUJ A;  4AVR A;  1BW3 A;  2KQA A;  2G6G A;  2PNW A;  1HD5 A;  3X2L A;  2PIC A;  4ZM7 A;  3X2I A;  1WC2 A;  3D30 A;  4FG2 A;  1OA9 A;  3X2O A;  4JJO A;  2PJJ A;  4JP6 A;  5GLY A;  5GLX A;  3X2H A;  2G5D A;  3SUK A;  1L8F A;  2GAE A;  3X2M A;  5H4U A;  3SUM A;  3X2K A;  2HCZ X;  3X2N A;  1BW4 A;  2PI8 A;  4L48 A;  4JP7 A;  2ENG A;  3X2G A;  4ENG A;  1OA7 A;  3ENG A;  2AE0 X;  4FG4 A;  4JCW A; 
#chains in the Genus database with same CATH topology
 3X2P A;  1Y4Z A;  3IR6 A;  1FDI A;  2PMZ A;  3TIW A;  1VC3 B;  1YNN D;  3O5A A;  4C2M A;  3SUJ A;  1UHD A;  1TWG A;  3OUG A;  1WCM A;  1I50 A;  1TWC A;  1QDN A;  2VPX A;  2NVY A;  5DYG A;  2C45 A;  1PYU B;  2PIC A;  3X2L A;  4ZM7 A;  2JIQ A;  3X2O A;  2WB1 A;  1FDO A;  4JJO A;  5GLX A;  1R27 A;  3IR5 A;  1R9T A;  4CRZ A;  2VPW A;  1Y1V A;  3H0G A;  3X2M A;  2VPZ A;  5B6C A;  4AAY A;  5C1B A;  2JIP A;  2YUJ A;  4AON B;  3QQ7 A;  2R7Z A;  3X2K A;  5EPP A;  1UHE A;  1PT0 A;  1YLE A;  2ENG A;  3GTQ A;  3X2G A;  1ZC1 A;  1Y5I A;  2PJH B;  1DMS A;  2WAQ A;  4JCW A;  2V45 A;  3GTG A;  3TM7 B;  4AYB A;  4FER A;  4FFT A;  4AZD A;  1K83 A;  3SUL A;  5GM9 A;  2JA5 A;  1BW3 A;  2G6G A;  1AW8 B;  1SIW A;  2DMR A;  5FTN A;  2A6E D;  3ML1 A;  4AOK B;  2JA7 A;  1S3S A;  1E61 A;  1WC2 A;  1OGY A;  1DMR A;  5GLY A;  3X2H A;  2BE5 D;  5DYI A;  5H4U A;  1G8J A;  1TWA A;  1TMO A;  2PI8 A;  4L48 A;  3GTM A;  1KQF A;  2R93 A;  3GTP A;  3CQZ A;  5T5M D;  1KQG A;  1PQH A;  1YNJ D;  2JIO A;  2A68 D;  1IW7 D;  1N10 A;  1E60 A;  4KDL A;  5FTL A;  3QQ8 A;  3X2J A;  3M3G A;  2IV2 X;  4JS7 A;  1TWH A;  1CR5 A;  2E7Z A;  2KQA A;  3HU3 A;  3QWZ A;  1G8K A;  2PNW A;  1HD5 A;  4KOD A;  1PPY A;  1Y1W A;  2CW0 D;  2KI8 A;  3X2I A;  4CRY G;  1H0H A;  3GTK A;  2V3V A;  3IR7 A;  1QCS A;  4FG2 A;  1H5N A;  2A69 D;  3HU2 A;  2YU9 A;  1WLF A;  5C18 A;  2G5D A;  1AA6 A;  2JIR A;  1L8F A;  1ZYR D;  4KO8 A;  3SUK A;  3SUM A;  3FKI A;  1BW4 A;  3X2N A;  1TWF A;  2JA6 A;  4DMR A;  1E18 A;  4JP7 A;  1OA7 A;  2JIM A;  2R92 A;  2AE0 X;  2Y0S A;  5T5I D;  3PLX B;  3GTJ A;  3CZB A;  4QIW A;  1R7R A;  2BH0 A;  2O5J D;  1E5V A;  2NAP A;  4AVR A;  4RV0 A;  1Q16 A;  4GA5 A;  4NOH A;  1PYQ A;  5GLF A;  2EEO B;  2VPY A;  1I3Q A;  3HU1 A;  1PT1 A;  1SFO A;  3GTL A;  1PQE A;  3D30 A;  1OA9 A;  3CF2 A;  3HKZ A;  3QC8 A;  4JP6 A;  2PJJ A;  4GA6 A;  1SMY D;  2GAE A;  2A6H D;  4KDI A;  5FTM A;  2E2H A;  2E2I A;  2NVX A;  5FTJ A;  1E32 A;  2HCZ X;  5FTK A;  3DMR A;  4KLN A;  3GTO A;  1CZ4 A;  1PQF A;  2B63 A;  4D7Z B;  4ENG A;  2VUM A;  1EU1 A;  3ENG A;  2NYA A;  1CZ5 A;  4FG4 A;  4CS0 A; 
#chains in the Genus database with same CATH homology
 1N10 A;  3X2P A;  4FER A;  3CZB A;  4FFT A;  3X2J A;  2BH0 A;  3M3G A;  3SUL A;  5GM9 A;  4JS7 A;  3SUJ A;  4AVR A;  1BW3 A;  2KQA A;  2G6G A;  2PNW A;  1HD5 A;  3X2L A;  2PIC A;  4ZM7 A;  3X2I A;  1WC2 A;  3D30 A;  4FG2 A;  1OA9 A;  3X2O A;  4JJO A;  2PJJ A;  4JP6 A;  5GLY A;  5GLX A;  3X2H A;  2G5D A;  3SUK A;  1L8F A;  2GAE A;  3X2M A;  5H4U A;  3SUM A;  3X2K A;  2HCZ X;  3X2N A;  1BW4 A;  2PI8 A;  4L48 A;  4JP7 A;  2ENG A;  3X2G A;  4ENG A;  1OA7 A;  3ENG A;  2AE0 X;  4FG4 A;  4JCW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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