3X2OA

Neutron and x-ray joint refined structure of pccel45a apo form at 298k.
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
180
structure length
179
Chain Sequence
ATGGYVQQATGQASFTMYSGCGSPACGKAASGFTAAINQLAFGSAPGLGAGDACGRCFALTGNHDPYSPNYTGPFGQTIVVKVTDLCPVQGQEFCGQTTSNPTNQHGMPFHFDICEDTGGSAKFFPSGHGALTGTFTEVSCSQWSGSDGGQLWNGACLSGETAPNWPSTACGNKGTAPS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Endoglucanase V-like protein
publication title Newton s cradle proton relay with amide imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
doi rcsb
source organism Phanerochaete chrysosporium
molecule tags Hydrolase
total genus 49
structure length 179
sequence length 180
ec nomenclature
pdb deposition date 2014-12-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 3x2oA00
2BH0A 4JP7A 2PJJA 4JCWA 2PICA 1N10A 3SUJA 3M3GA 3SUMA 4ENGA 3X2KA 4FERA 1BW4A 3X2PA 4JP6A 5H4UA 2AE0X 2G6GA 4L48A 2PNWA 4FG2A 3ENGA 1OA9A 3D30A 3CZBA 2HCZX 5GM9A 3X2GA 2KQAA 4JS7A 3X2OA 1OA7A 5GLYA 2GAEA 1WC2A 2PI8A 5GLXA 4ZM7A 4FFTA 4JJOA 3X2HA 2G5DA 1L8FA 4AVRA 3X2NA 3SUKA 3X2LA 1HD5A 1BW3A 3X2JA 3SULA 3X2IA 2ENGA 3X2MA 4FG4A
chains in the Genus database with same CATH superfamily
2BH0A 2A6ED 1OGYA 2YUJA 3SUMA 1YLEA 2VPWA 1IW7D 2YU9A 3X2KA 1CR5A 1TWFA 1UHDA 2G6GA 2KI8A 4KDLA 3HU3A 3HKZA 1H0HA 1I3QA 3D30A 1SIWA 3DMRA 1Y1WA 5GM9A 2O5JD 2E2IA 3GTGA 2KQAA 1TWCA 2E7ZA 4CS0A 2R92A 2NVXA 1R7RA 1QDNA 4CRZA 2PI8A 2JIRA 2VUMA 2JA5A 3X2HA 1E32A 1TWHA 2JIOA 3QQ8A 3QWZA 3X2LA 1HD5A 4C2MA 1CZ5A 3ML1A 5EPPA 2A6HD 2WAQA 3TM7B 3X2JA 2JA7A 1Q16A 1TWAA 4AYBA 4JP7A 1PT1A 1E60A 2CW0D 4JCWA 2VPXA 1N10A 5T5MD 1CZ4A 4ENGA 4FERA 1PYQA 2A68D 4JP6A 2R7ZA 1TWGA 3GTPA 4L48A 2PNWA 4GA6A 2WB1A 1ZC1A 4D7ZB 1OA9A 1Y5IA 2HCZX 2DMRA 5FTKA 4JS7A 2JIQA 3X2OA 3GTMA 2IV2X 3IR5A 1WC2A 3GTQA 1SMYD 5GLXA 2E2HA 1Y4ZA 4ZM7A 2V3VA 2PMZA 1AW8B 1L8FA 2G5DA 1VC3B 1G8JA 3SUKA 4DMRA 3TIWA 3SULA 1E61A 4NOHA 2Y0SA 3X2IA 4FG4A 5FTLA 3OUGA 1R27A 1WCMA 3H0GA 1DMSA 3CF2A 3SUJA 1YNJD 1PQFA 2VPYA 2BE5D 2PJHB 3HU2A 5T5ID 1BW4A 3X2PA 5H4UA 2AE0X 3PLXB 4KDIA 3GTOA 1PYUB 2A69D 4AOKB 4FG2A 3ENGA 1EU1A 1G8KA 1YNND 3CZBA 3O5AA 2NAPA 5DYIA 3CQZA 5GLFA 3X2GA 1KQGA 3FKIA 1I50A 1H5NA 1WLFA 3GTLA 1OA7A 5GLYA 2GAEA 5B6CA 3IR7A 4KODA 4JJOA 1UHEA 1PPYA 4CRYG 2VPZA 5DYGA 1BW3A 1K83A 1ZYRD 5FTMA 3HU1A 1R9TA 2ENGA 1DMRA 4KO8A 4QIWA 3X2MA 5C18A 2PJJA 5FTJA 1E18A 2PICA 2V45A 1PT0A 1S3SA 2NVYA 3M3GA 1AA6A 1QCSA 1PQHA 1Y1VA 1FDIA 2EEOB 4KLNA 1E5VA 4AZDA 2JA6A 2B63A 1PQEA 5FTNA 3GTJA 1KQFA 1FDOA 4GA5A 2JIPA 4AONB 3GTKA 2NYAA 4FFTA 4AVRA 3QQ7A 4RV0A 3X2NA 1TMOA 5C1BA 2R93A 2JIMA 2C45A 3QC8A 3IR6A 4AAYA 1SFOA
chains in the Genus database with same CATH topology
2BH0A 4JP7A 2PJJA 4JCWA 2PICA 1N10A 3SUJA 3M3GA 3SUMA 4ENGA 3X2KA 4FERA 1BW4A 3X2PA 4JP6A 5H4UA 2AE0X 2G6GA 4L48A 2PNWA 4FG2A 3ENGA 1OA9A 3D30A 3CZBA 2HCZX 5GM9A 3X2GA 2KQAA 4JS7A 3X2OA 1OA7A 5GLYA 2GAEA 1WC2A 2PI8A 5GLXA 4ZM7A 4FFTA 4JJOA 3X2HA 2G5DA 1L8FA 4AVRA 3X2NA 3SUKA 3X2LA 1HD5A 1BW3A 3X2JA 3SULA 3X2IA 2ENGA 3X2MA 4FG4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BH0 A;  4JP7 A;  2PJJ A;  4JCW A;  2PIC A;  1N10 A;  3SUJ A;  3M3G A;  3SUM A;  4ENG A;  3X2K A;  4FER A;  1BW4 A;  3X2P A;  4JP6 A;  5H4U A;  2AE0 X;  2G6G A;  4L48 A;  2PNW A;  4FG2 A;  3ENG A;  1OA9 A;  3D30 A;  3CZB A;  2HCZ X;  5GM9 A;  3X2G A;  2KQA A;  4JS7 A;  3X2O A;  1OA7 A;  5GLY A;  2GAE A;  1WC2 A;  2PI8 A;  5GLX A;  4ZM7 A;  4FFT A;  4JJO A;  3X2H A;  2G5D A;  1L8F A;  4AVR A;  3X2N A;  3SUK A;  3X2L A;  1HD5 A;  1BW3 A;  3X2J A;  3SUL A;  3X2I A;  2ENG A;  3X2M A;  4FG4 A; 
#chains in the Genus database with same CATH topology
 2BH0 A;  2A6E D;  1OGY A;  2YUJ A;  3SUM A;  1YLE A;  2VPW A;  1IW7 D;  2YU9 A;  3X2K A;  1CR5 A;  1TWF A;  1UHD A;  2G6G A;  2KI8 A;  4KDL A;  3HU3 A;  3HKZ A;  1H0H A;  1I3Q A;  3D30 A;  1SIW A;  3DMR A;  1Y1W A;  5GM9 A;  2O5J D;  2E2I A;  3GTG A;  2KQA A;  1TWC A;  2E7Z A;  4CS0 A;  2R92 A;  2NVX A;  1R7R A;  1QDN A;  4CRZ A;  2PI8 A;  2JIR A;  2VUM A;  2JA5 A;  3X2H A;  1E32 A;  1TWH A;  2JIO A;  3QQ8 A;  3QWZ A;  3X2L A;  1HD5 A;  4C2M A;  1CZ5 A;  3ML1 A;  5EPP A;  2A6H D;  2WAQ A;  3TM7 B;  3X2J A;  2JA7 A;  1Q16 A;  1TWA A;  4AYB A;  4JP7 A;  1PT1 A;  1E60 A;  2CW0 D;  4JCW A;  2VPX A;  1N10 A;  5T5M D;  1CZ4 A;  4ENG A;  4FER A;  1PYQ A;  2A68 D;  4JP6 A;  2R7Z A;  1TWG A;  3GTP A;  4L48 A;  2PNW A;  4GA6 A;  2WB1 A;  1ZC1 A;  4D7Z B;  1OA9 A;  1Y5I A;  2HCZ X;  2DMR A;  5FTK A;  4JS7 A;  2JIQ A;  3X2O A;  3GTM A;  2IV2 X;  3IR5 A;  1WC2 A;  3GTQ A;  1SMY D;  5GLX A;  2E2H A;  1Y4Z A;  4ZM7 A;  2V3V A;  2PMZ A;  1AW8 B;  1L8F A;  2G5D A;  1VC3 B;  1G8J A;  3SUK A;  4DMR A;  3TIW A;  3SUL A;  1E61 A;  4NOH A;  2Y0S A;  3X2I A;  4FG4 A;  5FTL A;  3OUG A;  1R27 A;  1WCM A;  3H0G A;  1DMS A;  3CF2 A;  3SUJ A;  1YNJ D;  1PQF A;  2VPY A;  2BE5 D;  2PJH B;  3HU2 A;  5T5I D;  1BW4 A;  3X2P A;  5H4U A;  2AE0 X;  3PLX B;  4KDI A;  3GTO A;  1PYU B;  2A69 D;  4AOK B;  4FG2 A;  3ENG A;  1EU1 A;  1G8K A;  1YNN D;  3CZB A;  3O5A A;  2NAP A;  5DYI A;  3CQZ A;  5GLF A;  3X2G A;  1KQG A;  3FKI A;  1I50 A;  1H5N A;  1WLF A;  3GTL A;  1OA7 A;  5GLY A;  2GAE A;  5B6C A;  3IR7 A;  4KOD A;  4JJO A;  1UHE A;  1PPY A;  4CRY G;  2VPZ A;  5DYG A;  1BW3 A;  1K83 A;  1ZYR D;  5FTM A;  3HU1 A;  1R9T A;  2ENG A;  1DMR A;  4KO8 A;  4QIW A;  3X2M A;  5C18 A;  2PJJ A;  5FTJ A;  1E18 A;  2PIC A;  2V45 A;  1PT0 A;  1S3S A;  2NVY A;  3M3G A;  1AA6 A;  1QCS A;  1PQH A;  1Y1V A;  1FDI A;  2EEO B;  4KLN A;  1E5V A;  4AZD A;  2JA6 A;  2B63 A;  1PQE A;  5FTN A;  3GTJ A;  1KQF A;  1FDO A;  4GA5 A;  2JIP A;  4AON B;  3GTK A;  2NYA A;  4FFT A;  4AVR A;  3QQ7 A;  4RV0 A;  3X2N A;  1TMO A;  5C1B A;  2R93 A;  2JIM A;  2C45 A;  3QC8 A;  3IR6 A;  4AAY A;  1SFO A; 
#chains in the Genus database with same CATH homology
 2BH0 A;  4JP7 A;  2PJJ A;  4JCW A;  2PIC A;  1N10 A;  3SUJ A;  3M3G A;  3SUM A;  4ENG A;  3X2K A;  4FER A;  1BW4 A;  3X2P A;  4JP6 A;  5H4U A;  2AE0 X;  2G6G A;  4L48 A;  2PNW A;  4FG2 A;  3ENG A;  1OA9 A;  3D30 A;  3CZB A;  2HCZ X;  5GM9 A;  3X2G A;  2KQA A;  4JS7 A;  3X2O A;  1OA7 A;  5GLY A;  2GAE A;  1WC2 A;  2PI8 A;  5GLX A;  4ZM7 A;  4FFT A;  4JJO A;  3X2H A;  2G5D A;  1L8F A;  4AVR A;  3X2N A;  3SUK A;  3X2L A;  1HD5 A;  1BW3 A;  3X2J A;  3SUL A;  3X2I A;  2ENG A;  3X2M A;  4FG4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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