4CS0A

Direct visualisation of strain-induced protein post-translational modification
Total Genus 33
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
127
structure length
126
Chain Sequence
b'SMIRTMLQGKLHRVKVTHADLHYEGACAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTAKAIPVQVA'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords ASPARTATE 1-DECARBOXYLASE
molecule tags Lyase
source organism Escherichia coli k-12
publication title The Structure of the Pand/Panz Protein Complex Reveals Negative Feedback Regulation of Pantothenate Biosynthesis by Coenzyme A.
pubmed doi rcsb
total genus 33
structure length 126
sequence length 127
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2014-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 4cs0A00
1OGYA 1PYQA 1PT0A 1Y4ZA 2NYAA 4CRZA 3GTKA 5DYIA 3TM7B 1PQEA 4KLNA 1Y1WA 1YLEA 2B63A 1SIWA 1H0HA 1AA6A 1KQFA 3GTGA 5C18A 3TIWA 3QWZA 2VUMA 2NVYA 2R7ZA 2C45A 2JIMA 4AAYA 1QCSA 4AZDA 2JIRA 3GTLA 2JIQA 3IR7A 4RV0A 3O5AA 2E7ZA 3GTQA 1PQFA 3QC8A 4GA6A 3IR5A 5T5MD 3GTJA 1SFOA 5EPPA 1E32A 1TWCA 5DYGA 5FTMA 1AW8B 1DMSA 1E60A 4AOKB 1Y5IA 2DMRA 4DMRA 1R27A 4KDLA 2E2HA 2WAQA 3HU1A 5GLFA 5C1BA 1PPYA 3H0GA 1H5NA 1EU1A 4KDIA 1KQGA 1FDOA 1R7RA 3GTOA 2V45A 2NAPA 1QDNA 1DMRA 1PQHA 1CZ4A 1UHEA 4CS0A 4AONB 1Y1VA 2JA5A 1FDIA 5FTJA 3HU3A 2Y0SA 4CRYG 2PJHB 1WLFA 2EEOB 1VC3B 2VPWA 2JIPA 3HKZA 4KO8A 5FTKA 3ML1A 1I50A 2JA6A 1WCMA 1G8JA 1CZ5A 1TWHA 1G8KA 1PT1A 3QQ7A 3IR6A 5FTNA 2JA7A 1R9TA 4KODA 4QIWA 3GTMA 1CR5A 3DMRA 1S3SA 3FKIA 2IV2X 3CQZA 4C2MA 3CF2A 4GA5A 2JIOA 1E5VA 1K83A 5T5ID 2VPZA 2KI8A 3OUGA 1E18A 4D7ZB 3GTPA 5B6CA 3QQ8A 5FTLA 1TWAA 1I3QA 1Q16A 4AYBA 2PMZA 3HU2A 1PYUB 2YU9A 1IW7D 2R92A 1E61A 2E2IA 1TMOA 2R93A 2V3VA 2WB1A 1TWFA 1UHDA 1TWGA 3PLXB 2NVXA 2VPYA 2VPXA
chains in the Genus database with same CATH superfamily
1OGYA 1PYQA 1PT0A 1Y4ZA 2NYAA 4CRZA 3GTKA 5DYIA 3TM7B 1PQEA 2G5DA 4KLNA 1Y1WA 1YLEA 2PI8A 2B63A 1SIWA 4JCWA 3X2OA 1H0HA 1AA6A 3X2JA 2A69D 4JJOA 1KQFA 3X2KA 3GTGA 5C18A 3TIWA 3QWZA 2VUMA 2NVYA 2R7ZA 2C45A 2JIMA 3X2NA 4AAYA 1QCSA 4AZDA 3D30A 2YUJA 1OA9A 2JIRA 3GTLA 1N10A 2GAEA 2JIQA 3IR7A 4RV0A 3O5AA 2E7ZA 3X2IA 3GTQA 4ZM7A 1PQFA 3QC8A 4GA6A 1L8FA 3SULA 3IR5A 1OA7A 5T5MD 3GTJA 1SFOA 5EPPA 4NOHA 1E32A 1TWCA 5DYGA 5FTMA 1AW8B 1WC2A 5GLYA 2G6GA 1DMSA 1E60A 2HCZX 1Y5IA 2DMRA 4AOKB 4DMRA 1R27A 4KDLA 3CZBA 2E2HA 2WAQA 3HU1A 5GLFA 3X2GA 5C1BA 1PPYA 5H4UA 3X2LA 3H0GA 1H5NA 1EU1A 2CW0D 2A68D 4KDIA 2BE5D 1KQGA 1ZYRD 1FDOA 1R7RA 3GTOA 2V45A 2NAPA 2AE0X 1QDNA 1DMRA 1PQHA 5GLXA 1BW3A 1CZ4A 2A6HD 1UHEA 4CS0A 2A6ED 4AONB 4FG2A 1Y1VA 2JA5A 2ENGA 1FDIA 5FTJA 3HU3A 3X2PA 2Y0SA 4CRYG 2PJHB 1WLFA 2EEOB 1VC3B 2VPWA 2JIPA 1HD5A 3HKZA 4KO8A 5FTKA 3ML1A 3SUMA 4ENGA 2O5JD 1I50A 2KQAA 4JP6A 2JA6A 5GM9A 1WCMA 1G8JA 1YNND 1CZ5A 3ENGA 1TWHA 1G8KA 1PT1A 3QQ7A 3IR6A 5FTNA 1ZC1A 2JA7A 1R9TA 4KODA 4QIWA 3GTMA 1CR5A 1YNJD 3X2HA 3DMRA 1S3SA 3FKIA 2IV2X 3SUJA 3CQZA 4C2MA 3CF2A 4GA5A 2JIOA 1E5VA 1K83A 4JP7A 5T5ID 2VPZA 2KI8A 3OUGA 1E18A 4D7ZB 1BW4A 3GTPA 5B6CA 3QQ8A 2BH0A 5FTLA 3SUKA 1TWAA 1I3QA 1Q16A 4JS7A 4AYBA 2PJJA 2PMZA 3HU2A 4FG4A 1PYUB 3M3GA 2YU9A 1IW7D 2R92A 1E61A 4FFTA 2E2IA 1TMOA 2R93A 2V3VA 2WB1A 4AVRA 3X2MA 1SMYD 1TWFA 4FERA 1UHDA 1TWGA 3PLXB 2NVXA 2PNWA 4L48A 2VPYA 2VPXA 2PICA
chains in the Genus database with same CATH topology
1OGYA 1PYQA 1PT0A 1Y4ZA 2NYAA 4CRZA 3GTKA 5DYIA 3TM7B 1PQEA 2G5DA 4KLNA 1Y1WA 1YLEA 2PI8A 2B63A 1SIWA 1H0HA 1AA6A 2A69D 1KQFA 3GTGA 5C18A 3TIWA 3QWZA 2VUMA 2NVYA 2R7ZA 2C45A 2JIMA 4AAYA 1QCSA 4AZDA 2YUJA 2JIRA 3GTLA 2GAEA 2JIQA 3IR7A 4RV0A 3O5AA 2E7ZA 3GTQA 1PQFA 3QC8A 4GA6A 3IR5A 5T5MD 3GTJA 1SFOA 5EPPA 4NOHA 1E32A 1TWCA 5DYGA 5FTMA 1AW8B 2G6GA 1DMSA 1E60A 4AOKB 1Y5IA 2DMRA 4DMRA 1R27A 4KDLA 3CZBA 2E2HA 2WAQA 3HU1A 5GLFA 5C1BA 1PPYA 3H0GA 1H5NA 1EU1A 2CW0D 2A68D 4KDIA 2BE5D 1KQGA 1ZYRD 1FDOA 1R7RA 3GTOA 2V45A 2NAPA 2AE0X 1QDNA 1DMRA 1PQHA 1CZ4A 2A6HD 1UHEA 4CS0A 2A6ED 4AONB 1Y1VA 2JA5A 1FDIA 5FTJA 3HU3A 2Y0SA 4CRYG 2PJHB 1WLFA 2EEOB 1VC3B 2VPWA 2JIPA 3HKZA 4KO8A 5FTKA 3ML1A 2O5JD 1I50A 2JA6A 1WCMA 1G8JA 1YNND 1CZ5A 1TWHA 1G8KA 1PT1A 3QQ7A 3IR6A 5FTNA 1ZC1A 2JA7A 1R9TA 4KODA 4QIWA 3GTMA 1CR5A 1YNJD 3DMRA 1S3SA 3FKIA 2IV2X 3CQZA 4C2MA 3CF2A 4GA5A 2JIOA 1E5VA 1K83A 5T5ID 2VPZA 2KI8A 3OUGA 1E18A 4D7ZB 3GTPA 5B6CA 3QQ8A 5FTLA 1TWAA 1I3QA 1Q16A 4AYBA 2PJJA 2PMZA 3HU2A 1PYUB 2YU9A 1IW7D 2R92A 1E61A 2E2IA 1TMOA 2R93A 2V3VA 2WB1A 1SMYD 1TWFA 1UHDA 1TWGA 3PLXB 2NVXA 2PNWA 2VPYA 2VPXA 2PICA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OGY A;  1PYQ A;  1PT0 A;  1Y4Z A;  2NYA A;  4CRZ A;  3GTK A;  5DYI A;  3TM7 B;  1PQE A;  4KLN A;  1Y1W A;  1YLE A;  2B63 A;  1SIW A;  1H0H A;  1AA6 A;  1KQF A;  3GTG A;  5C18 A;  3TIW A;  3QWZ A;  2VUM A;  2NVY A;  2R7Z A;  2C45 A;  2JIM A;  4AAY A;  1QCS A;  4AZD A;  2JIR A;  3GTL A;  2JIQ A;  3IR7 A;  4RV0 A;  3O5A A;  2E7Z A;  3GTQ A;  1PQF A;  3QC8 A;  4GA6 A;  3IR5 A;  5T5M D;  3GTJ A;  1SFO A;  5EPP A;  1E32 A;  1TWC A;  5DYG A;  5FTM A;  1AW8 B;  1DMS A;  1E60 A;  4AOK B;  1Y5I A;  2DMR A;  4DMR A;  1R27 A;  4KDL A;  2E2H A;  2WAQ A;  3HU1 A;  5GLF A;  5C1B A;  1PPY A;  3H0G A;  1H5N A;  1EU1 A;  4KDI A;  1KQG A;  1FDO A;  1R7R A;  3GTO A;  2V45 A;  2NAP A;  1QDN A;  1DMR A;  1PQH A;  1CZ4 A;  1UHE A;  4CS0 A;  4AON B;  1Y1V A;  2JA5 A;  1FDI A;  5FTJ A;  3HU3 A;  2Y0S A;  4CRY G;  2PJH B;  1WLF A;  2EEO B;  1VC3 B;  2VPW A;  2JIP A;  3HKZ A;  4KO8 A;  5FTK A;  3ML1 A;  1I50 A;  2JA6 A;  1WCM A;  1G8J A;  1CZ5 A;  1TWH A;  1G8K A;  1PT1 A;  3QQ7 A;  3IR6 A;  5FTN A;  2JA7 A;  1R9T A;  4KOD A;  4QIW A;  3GTM A;  1CR5 A;  3DMR A;  1S3S A;  3FKI A;  2IV2 X;  3CQZ A;  4C2M A;  3CF2 A;  4GA5 A;  2JIO A;  1E5V A;  1K83 A;  5T5I D;  2VPZ A;  2KI8 A;  3OUG A;  1E18 A;  4D7Z B;  3GTP A;  5B6C A;  3QQ8 A;  5FTL A;  1TWA A;  1I3Q A;  1Q16 A;  4AYB A;  2PMZ A;  3HU2 A;  1PYU B;  2YU9 A;  1IW7 D;  2R92 A;  1E61 A;  2E2I A;  1TMO A;  2R93 A;  2V3V A;  2WB1 A;  1TWF A;  1UHD A;  1TWG A;  3PLX B;  2NVX A;  2VPY A;  2VPX A; 
#chains in the Genus database with same CATH topology
 1OGY A;  1PYQ A;  1PT0 A;  1Y4Z A;  2NYA A;  4CRZ A;  3GTK A;  5DYI A;  3TM7 B;  1PQE A;  2G5D A;  4KLN A;  1Y1W A;  1YLE A;  2PI8 A;  2B63 A;  1SIW A;  4JCW A;  3X2O A;  1H0H A;  1AA6 A;  3X2J A;  2A69 D;  4JJO A;  1KQF A;  3X2K A;  3GTG A;  5C18 A;  3TIW A;  3QWZ A;  2VUM A;  2NVY A;  2R7Z A;  2C45 A;  2JIM A;  3X2N A;  4AAY A;  1QCS A;  4AZD A;  3D30 A;  2YUJ A;  1OA9 A;  2JIR A;  3GTL A;  1N10 A;  2GAE A;  2JIQ A;  3IR7 A;  4RV0 A;  3O5A A;  2E7Z A;  3X2I A;  3GTQ A;  4ZM7 A;  1PQF A;  3QC8 A;  4GA6 A;  1L8F A;  3SUL A;  3IR5 A;  1OA7 A;  5T5M D;  3GTJ A;  1SFO A;  5EPP A;  4NOH A;  1E32 A;  1TWC A;  5DYG A;  5FTM A;  1AW8 B;  1WC2 A;  5GLY A;  2G6G A;  1DMS A;  1E60 A;  2HCZ X;  1Y5I A;  2DMR A;  4AOK B;  4DMR A;  1R27 A;  4KDL A;  3CZB A;  2E2H A;  2WAQ A;  3HU1 A;  5GLF A;  3X2G A;  5C1B A;  1PPY A;  5H4U A;  3X2L A;  3H0G A;  1H5N A;  1EU1 A;  2CW0 D;  2A68 D;  4KDI A;  2BE5 D;  1KQG A;  1ZYR D;  1FDO A;  1R7R A;  3GTO A;  2V45 A;  2NAP A;  2AE0 X;  1QDN A;  1DMR A;  1PQH A;  5GLX A;  1BW3 A;  1CZ4 A;  2A6H D;  1UHE A;  4CS0 A;  2A6E D;  4AON B;  4FG2 A;  1Y1V A;  2JA5 A;  2ENG A;  1FDI A;  5FTJ A;  3HU3 A;  3X2P A;  2Y0S A;  4CRY G;  2PJH B;  1WLF A;  2EEO B;  1VC3 B;  2VPW A;  2JIP A;  1HD5 A;  3HKZ A;  4KO8 A;  5FTK A;  3ML1 A;  3SUM A;  4ENG A;  2O5J D;  1I50 A;  2KQA A;  4JP6 A;  2JA6 A;  5GM9 A;  1WCM A;  1G8J A;  1YNN D;  1CZ5 A;  3ENG A;  1TWH A;  1G8K A;  1PT1 A;  3QQ7 A;  3IR6 A;  5FTN A;  1ZC1 A;  2JA7 A;  1R9T A;  4KOD A;  4QIW A;  3GTM A;  1CR5 A;  1YNJ D;  3X2H A;  3DMR A;  1S3S A;  3FKI A;  2IV2 X;  3SUJ A;  3CQZ A;  4C2M A;  3CF2 A;  4GA5 A;  2JIO A;  1E5V A;  1K83 A;  4JP7 A;  5T5I D;  2VPZ A;  2KI8 A;  3OUG A;  1E18 A;  4D7Z B;  1BW4 A;  3GTP A;  5B6C A;  3QQ8 A;  2BH0 A;  5FTL A;  3SUK A;  1TWA A;  1I3Q A;  1Q16 A;  4JS7 A;  4AYB A;  2PJJ A;  2PMZ A;  3HU2 A;  4FG4 A;  1PYU B;  3M3G A;  2YU9 A;  1IW7 D;  2R92 A;  1E61 A;  4FFT A;  2E2I A;  1TMO A;  2R93 A;  2V3V A;  2WB1 A;  4AVR A;  3X2M A;  1SMY D;  1TWF A;  4FER A;  1UHD A;  1TWG A;  3PLX B;  2NVX A;  2PNW A;  4L48 A;  2VPY A;  2VPX A;  2PIC A; 
#chains in the Genus database with same CATH homology
 1OGY A;  1PYQ A;  1PT0 A;  1Y4Z A;  2NYA A;  4CRZ A;  3GTK A;  5DYI A;  3TM7 B;  1PQE A;  2G5D A;  4KLN A;  1Y1W A;  1YLE A;  2PI8 A;  2B63 A;  1SIW A;  1H0H A;  1AA6 A;  2A69 D;  1KQF A;  3GTG A;  5C18 A;  3TIW A;  3QWZ A;  2VUM A;  2NVY A;  2R7Z A;  2C45 A;  2JIM A;  4AAY A;  1QCS A;  4AZD A;  2YUJ A;  2JIR A;  3GTL A;  2GAE A;  2JIQ A;  3IR7 A;  4RV0 A;  3O5A A;  2E7Z A;  3GTQ A;  1PQF A;  3QC8 A;  4GA6 A;  3IR5 A;  5T5M D;  3GTJ A;  1SFO A;  5EPP A;  4NOH A;  1E32 A;  1TWC A;  5DYG A;  5FTM A;  1AW8 B;  2G6G A;  1DMS A;  1E60 A;  4AOK B;  1Y5I A;  2DMR A;  4DMR A;  1R27 A;  4KDL A;  3CZB A;  2E2H A;  2WAQ A;  3HU1 A;  5GLF A;  5C1B A;  1PPY A;  3H0G A;  1H5N A;  1EU1 A;  2CW0 D;  2A68 D;  4KDI A;  2BE5 D;  1KQG A;  1ZYR D;  1FDO A;  1R7R A;  3GTO A;  2V45 A;  2NAP A;  2AE0 X;  1QDN A;  1DMR A;  1PQH A;  1CZ4 A;  2A6H D;  1UHE A;  4CS0 A;  2A6E D;  4AON B;  1Y1V A;  2JA5 A;  1FDI A;  5FTJ A;  3HU3 A;  2Y0S A;  4CRY G;  2PJH B;  1WLF A;  2EEO B;  1VC3 B;  2VPW A;  2JIP A;  3HKZ A;  4KO8 A;  5FTK A;  3ML1 A;  2O5J D;  1I50 A;  2JA6 A;  1WCM A;  1G8J A;  1YNN D;  1CZ5 A;  1TWH A;  1G8K A;  1PT1 A;  3QQ7 A;  3IR6 A;  5FTN A;  1ZC1 A;  2JA7 A;  1R9T A;  4KOD A;  4QIW A;  3GTM A;  1CR5 A;  1YNJ D;  3DMR A;  1S3S A;  3FKI A;  2IV2 X;  3CQZ A;  4C2M A;  3CF2 A;  4GA5 A;  2JIO A;  1E5V A;  1K83 A;  5T5I D;  2VPZ A;  2KI8 A;  3OUG A;  1E18 A;  4D7Z B;  3GTP A;  5B6C A;  3QQ8 A;  5FTL A;  1TWA A;  1I3Q A;  1Q16 A;  4AYB A;  2PJJ A;  2PMZ A;  3HU2 A;  1PYU B;  2YU9 A;  1IW7 D;  2R92 A;  1E61 A;  2E2I A;  1TMO A;  2R93 A;  2V3V A;  2WB1 A;  1SMY D;  1TWF A;  1UHD A;  1TWG A;  3PLX B;  2NVX A;  2PNW A;  2VPY A;  2VPX A;  2PIC A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...