4CS0A

Direct visualisation of strain-induced protein post-translational modification
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
127
structure length
126
Chain Sequence
SMIRTMLQGKLHRVKVTHADLHYEGACAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTAKAIPVQVA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords ASPARTATE 1-DECARBOXYLASE
publication title The Structure of the Pand/Panz Protein Complex Reveals Negative Feedback Regulation of Pantothenate Biosynthesis by Coenzyme A.
pubmed doi rcsb
source organism Escherichia coli k-12
total genus 33
structure length 126
sequence length 127
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2014-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 4cs0A00
3FKIA 4CRZA 3O5AA 5FTMA 2JIOA 5C1BA 1PPYA 1PYUB 1Q16A 2C45A 4CS0A 1E32A 2VUMA 1H5NA 1SIWA 4KO8A 1R27A 3ML1A 2PMZA 2VPZA 1IW7D 2V45A 5EPPA 1UHDA 1CZ4A 1CR5A 4GA6A 3QWZA 3HKZA 1DMSA 5C18A 4AOKB 4DMRA 2KI8A 1PT0A 3IR6A 4AONB 4AAYA 1FDIA 3TM7B 1S3SA 1H0HA 4KLNA 1Y1WA 3HU2A 1TWHA 4AZDA 4C2MA 2JA5A 3DMRA 1VC3B 2IV2X 1PQFA 3QC8A 3HU1A 5DYIA 3GTQA 1KQGA 1PT1A 1OGYA 1G8KA 2B63A 1PQHA 1TWAA 2DMRA 1TWCA 2E2HA 1E61A 1E60A 4KDIA 2WB1A 1K83A 4GA5A 2WAQA 1E5VA 2JIPA 1QCSA 1Y1VA 2NYAA 1Y5IA 1TWGA 2V3VA 3IR5A 2VPXA 1TWFA 2PJHB 5T5MD 2JA6A 1R7RA 1AW8B 2R7ZA 1E18A 1I3QA 1YLEA 3QQ8A 1QDNA 1WLFA 3GTOA 1PYQA 2JIRA 2JIQA 3GTMA 2NAPA 1CZ5A 1TMOA 4QIWA 1Y4ZA 2VPYA 3IR7A 4AYBA 3QQ7A 5B6CA 2R93A 3CQZA 2VPWA 2JA7A 1G8JA 4KODA 3OUGA 3HU3A 2YU9A 4CRYG 5T5ID 3GTJA 5FTLA 1KQFA 1PQEA 2R92A 2E2IA 2JIMA 4RV0A 4KDLA 5FTNA 5FTJA 3GTLA 3GTGA 2EEOB 5DYGA 2E7ZA 2NVYA 3GTPA 3PLXB 3CF2A 2Y0SA 4D7ZB 1FDOA 5GLFA 3GTKA 1DMRA 3H0GA 1I50A 2NVXA 1UHEA 3TIWA 1R9TA 1SFOA 1WCMA 1EU1A 1AA6A 5FTKA
chains in the Genus database with same CATH superfamily
3FKIA 4CRZA 3O5AA 5FTMA 2JIOA 2O5JD 5C1BA 1PPYA 1PYUB 1Q16A 2C45A 4CS0A 1E32A 2VUMA 1H5NA 1SIWA 1YNJD 4KO8A 1R27A 3ML1A 2PMZA 2VPZA 2PI8A 1IW7D 2V45A 5EPPA 1UHDA 2G5DA 1CZ4A 1CR5A 4GA6A 3QWZA 3HKZA 1DMSA 5C18A 2YUJA 2ENGA 4AOKB 4DMRA 2KI8A 1BW4A 2HCZX 5GM9A 2G6GA 1PT0A 3IR6A 3X2KA 4AONB 1FDIA 4AAYA 1ZC1A 2PNWA 3TM7B 1S3SA 1H0HA 4KLNA 3X2IA 1Y1WA 3HU2A 1TWHA 3X2HA 2GAEA 4AZDA 4C2MA 2JA5A 3DMRA 1VC3B 2IV2X 2BH0A 3X2GA 1PQFA 3QC8A 1BW3A 2A6HD 3HU1A 1N10A 5DYIA 3GTQA 4FFTA 3SULA 1PT1A 1OGYA 1KQGA 1G8KA 2B63A 4JCWA 3M3GA 3X2LA 1PQHA 1SMYD 1TWAA 2DMRA 1TWCA 2E2HA 1E61A 1E60A 4KDIA 2WB1A 4L48A 4GA5A 3X2NA 1K83A 1YNND 2WAQA 1E5VA 2JIPA 5GLXA 1QCSA 1Y1VA 2NYAA 1Y5IA 1TWGA 2V3VA 4AVRA 3X2MA 3IR5A 4ZM7A 2VPXA 1TWFA 3CZBA 1WC2A 2PJHB 5T5MD 3SUMA 2JA6A 1R7RA 1AW8B 2R7ZA 1E18A 1I3QA 1YLEA 3QQ8A 2PJJA 1QDNA 1WLFA 3X2OA 1HD5A 3GTOA 4JJOA 1PYQA 2JIRA 2JIQA 3GTMA 2NAPA 1OA9A 2BE5D 1CZ5A 1TMOA 4QIWA 1Y4ZA 2VPYA 3IR7A 4AYBA 3QQ7A 5B6CA 2R93A 3CQZA 1OA7A 2VPWA 5H4UA 2JA7A 3D30A 1G8JA 4KODA 3OUGA 4ENGA 3HU3A 2YU9A 4FERA 4CRYG 2PICA 5T5ID 3ENGA 3GTJA 4FG4A 5FTLA 1KQFA 1PQEA 1L8FA 4NOHA 2R92A 2E2IA 2JIMA 2AE0X 4RV0A 4KDLA 5FTNA 5FTJA 3GTLA 3SUKA 3GTGA 2CW0D 2EEOB 5DYGA 2E7ZA 2NVYA 5GLYA 1ZYRD 2A68D 3GTPA 3PLXB 3X2PA 3CF2A 2Y0SA 4D7ZB 1FDOA 2A6ED 4JP7A 5GLFA 4FG2A 2A69D 3GTKA 1DMRA 3H0GA 4JP6A 3X2JA 1I50A 2NVXA 1UHEA 3TIWA 1R9TA 1SFOA 1WCMA 2KQAA 3SUJA 1EU1A 4JS7A 1AA6A 5FTKA
chains in the Genus database with same CATH topology
3FKIA 4CRZA 3O5AA 5FTMA 2JIOA 2O5JD 5C1BA 1PPYA 1PYUB 1Q16A 2C45A 4CS0A 1E32A 2VUMA 1H5NA 1SIWA 1YNJD 4KO8A 1R27A 3ML1A 2PMZA 2VPZA 2PI8A 1IW7D 2V45A 5EPPA 1UHDA 2G5DA 1CZ4A 1CR5A 4GA6A 3QWZA 3HKZA 1DMSA 5C18A 2YUJA 4AOKB 4DMRA 2KI8A 2G6GA 1PT0A 3IR6A 4AONB 4AAYA 1FDIA 1ZC1A 2PNWA 3TM7B 1S3SA 1H0HA 4KLNA 1Y1WA 3HU2A 1TWHA 4AZDA 2GAEA 4C2MA 2JA5A 3DMRA 1VC3B 2IV2X 1PQFA 3QC8A 2A6HD 3HU1A 5DYIA 3GTQA 1KQGA 1PT1A 1OGYA 1G8KA 2B63A 1PQHA 1SMYD 1TWAA 2DMRA 1TWCA 2E2HA 1E61A 1E60A 4KDIA 2WB1A 1K83A 4GA5A 1YNND 2WAQA 1E5VA 2JIPA 1QCSA 1Y1VA 2NYAA 1Y5IA 1TWGA 2V3VA 3IR5A 2VPXA 1TWFA 3CZBA 2PJHB 5T5MD 2JA6A 1R7RA 1AW8B 2R7ZA 1E18A 1I3QA 1YLEA 3QQ8A 2PJJA 1QDNA 1WLFA 3GTOA 1PYQA 2JIRA 2JIQA 3GTMA 2NAPA 2BE5D 1CZ5A 1TMOA 4QIWA 1Y4ZA 2VPYA 3IR7A 4AYBA 3QQ7A 5B6CA 2R93A 3CQZA 2VPWA 2JA7A 1G8JA 4KODA 3OUGA 3HU3A 2YU9A 4CRYG 2PICA 5T5ID 3GTJA 5FTLA 1KQFA 1PQEA 4NOHA 2R92A 2E2IA 2JIMA 2AE0X 4RV0A 4KDLA 5FTNA 5FTJA 3GTLA 3GTGA 2CW0D 2EEOB 5DYGA 2E7ZA 2NVYA 1ZYRD 2A68D 3GTPA 3PLXB 3CF2A 2Y0SA 4D7ZB 1FDOA 2A6ED 5GLFA 2A69D 3GTKA 1DMRA 3H0GA 1I50A 2NVXA 1UHEA 3TIWA 1R9TA 1SFOA 1WCMA 1EU1A 1AA6A 5FTKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FKI A;  4CRZ A;  3O5A A;  5FTM A;  2JIO A;  5C1B A;  1PPY A;  1PYU B;  1Q16 A;  2C45 A;  4CS0 A;  1E32 A;  2VUM A;  1H5N A;  1SIW A;  4KO8 A;  1R27 A;  3ML1 A;  2PMZ A;  2VPZ A;  1IW7 D;  2V45 A;  5EPP A;  1UHD A;  1CZ4 A;  1CR5 A;  4GA6 A;  3QWZ A;  3HKZ A;  1DMS A;  5C18 A;  4AOK B;  4DMR A;  2KI8 A;  1PT0 A;  3IR6 A;  4AON B;  4AAY A;  1FDI A;  3TM7 B;  1S3S A;  1H0H A;  4KLN A;  1Y1W A;  3HU2 A;  1TWH A;  4AZD A;  4C2M A;  2JA5 A;  3DMR A;  1VC3 B;  2IV2 X;  1PQF A;  3QC8 A;  3HU1 A;  5DYI A;  3GTQ A;  1KQG A;  1PT1 A;  1OGY A;  1G8K A;  2B63 A;  1PQH A;  1TWA A;  2DMR A;  1TWC A;  2E2H A;  1E61 A;  1E60 A;  4KDI A;  2WB1 A;  1K83 A;  4GA5 A;  2WAQ A;  1E5V A;  2JIP A;  1QCS A;  1Y1V A;  2NYA A;  1Y5I A;  1TWG A;  2V3V A;  3IR5 A;  2VPX A;  1TWF A;  2PJH B;  5T5M D;  2JA6 A;  1R7R A;  1AW8 B;  2R7Z A;  1E18 A;  1I3Q A;  1YLE A;  3QQ8 A;  1QDN A;  1WLF A;  3GTO A;  1PYQ A;  2JIR A;  2JIQ A;  3GTM A;  2NAP A;  1CZ5 A;  1TMO A;  4QIW A;  1Y4Z A;  2VPY A;  3IR7 A;  4AYB A;  3QQ7 A;  5B6C A;  2R93 A;  3CQZ A;  2VPW A;  2JA7 A;  1G8J A;  4KOD A;  3OUG A;  3HU3 A;  2YU9 A;  4CRY G;  5T5I D;  3GTJ A;  5FTL A;  1KQF A;  1PQE A;  2R92 A;  2E2I A;  2JIM A;  4RV0 A;  4KDL A;  5FTN A;  5FTJ A;  3GTL A;  3GTG A;  2EEO B;  5DYG A;  2E7Z A;  2NVY A;  3GTP A;  3PLX B;  3CF2 A;  2Y0S A;  4D7Z B;  1FDO A;  5GLF A;  3GTK A;  1DMR A;  3H0G A;  1I50 A;  2NVX A;  1UHE A;  3TIW A;  1R9T A;  1SFO A;  1WCM A;  1EU1 A;  1AA6 A;  5FTK A; 
#chains in the Genus database with same CATH topology
 3FKI A;  4CRZ A;  3O5A A;  5FTM A;  2JIO A;  2O5J D;  5C1B A;  1PPY A;  1PYU B;  1Q16 A;  2C45 A;  4CS0 A;  1E32 A;  2VUM A;  1H5N A;  1SIW A;  1YNJ D;  4KO8 A;  1R27 A;  3ML1 A;  2PMZ A;  2VPZ A;  2PI8 A;  1IW7 D;  2V45 A;  5EPP A;  1UHD A;  2G5D A;  1CZ4 A;  1CR5 A;  4GA6 A;  3QWZ A;  3HKZ A;  1DMS A;  5C18 A;  2YUJ A;  2ENG A;  4AOK B;  4DMR A;  2KI8 A;  1BW4 A;  2HCZ X;  5GM9 A;  2G6G A;  1PT0 A;  3IR6 A;  3X2K A;  4AON B;  1FDI A;  4AAY A;  1ZC1 A;  2PNW A;  3TM7 B;  1S3S A;  1H0H A;  4KLN A;  3X2I A;  1Y1W A;  3HU2 A;  1TWH A;  3X2H A;  2GAE A;  4AZD A;  4C2M A;  2JA5 A;  3DMR A;  1VC3 B;  2IV2 X;  2BH0 A;  3X2G A;  1PQF A;  3QC8 A;  1BW3 A;  2A6H D;  3HU1 A;  1N10 A;  5DYI A;  3GTQ A;  4FFT A;  3SUL A;  1PT1 A;  1OGY A;  1KQG A;  1G8K A;  2B63 A;  4JCW A;  3M3G A;  3X2L A;  1PQH A;  1SMY D;  1TWA A;  2DMR A;  1TWC A;  2E2H A;  1E61 A;  1E60 A;  4KDI A;  2WB1 A;  4L48 A;  4GA5 A;  3X2N A;  1K83 A;  1YNN D;  2WAQ A;  1E5V A;  2JIP A;  5GLX A;  1QCS A;  1Y1V A;  2NYA A;  1Y5I A;  1TWG A;  2V3V A;  4AVR A;  3X2M A;  3IR5 A;  4ZM7 A;  2VPX A;  1TWF A;  3CZB A;  1WC2 A;  2PJH B;  5T5M D;  3SUM A;  2JA6 A;  1R7R A;  1AW8 B;  2R7Z A;  1E18 A;  1I3Q A;  1YLE A;  3QQ8 A;  2PJJ A;  1QDN A;  1WLF A;  3X2O A;  1HD5 A;  3GTO A;  4JJO A;  1PYQ A;  2JIR A;  2JIQ A;  3GTM A;  2NAP A;  1OA9 A;  2BE5 D;  1CZ5 A;  1TMO A;  4QIW A;  1Y4Z A;  2VPY A;  3IR7 A;  4AYB A;  3QQ7 A;  5B6C A;  2R93 A;  3CQZ A;  1OA7 A;  2VPW A;  5H4U A;  2JA7 A;  3D30 A;  1G8J A;  4KOD A;  3OUG A;  4ENG A;  3HU3 A;  2YU9 A;  4FER A;  4CRY G;  2PIC A;  5T5I D;  3ENG A;  3GTJ A;  4FG4 A;  5FTL A;  1KQF A;  1PQE A;  1L8F A;  4NOH A;  2R92 A;  2E2I A;  2JIM A;  2AE0 X;  4RV0 A;  4KDL A;  5FTN A;  5FTJ A;  3GTL A;  3SUK A;  3GTG A;  2CW0 D;  2EEO B;  5DYG A;  2E7Z A;  2NVY A;  5GLY A;  1ZYR D;  2A68 D;  3GTP A;  3PLX B;  3X2P A;  3CF2 A;  2Y0S A;  4D7Z B;  1FDO A;  2A6E D;  4JP7 A;  5GLF A;  4FG2 A;  2A69 D;  3GTK A;  1DMR A;  3H0G A;  4JP6 A;  3X2J A;  1I50 A;  2NVX A;  1UHE A;  3TIW A;  1R9T A;  1SFO A;  1WCM A;  2KQA A;  3SUJ A;  1EU1 A;  4JS7 A;  1AA6 A;  5FTK A; 
#chains in the Genus database with same CATH homology
 3FKI A;  4CRZ A;  3O5A A;  5FTM A;  2JIO A;  2O5J D;  5C1B A;  1PPY A;  1PYU B;  1Q16 A;  2C45 A;  4CS0 A;  1E32 A;  2VUM A;  1H5N A;  1SIW A;  1YNJ D;  4KO8 A;  1R27 A;  3ML1 A;  2PMZ A;  2VPZ A;  2PI8 A;  1IW7 D;  2V45 A;  5EPP A;  1UHD A;  2G5D A;  1CZ4 A;  1CR5 A;  4GA6 A;  3QWZ A;  3HKZ A;  1DMS A;  5C18 A;  2YUJ A;  4AOK B;  4DMR A;  2KI8 A;  2G6G A;  1PT0 A;  3IR6 A;  4AON B;  4AAY A;  1FDI A;  1ZC1 A;  2PNW A;  3TM7 B;  1S3S A;  1H0H A;  4KLN A;  1Y1W A;  3HU2 A;  1TWH A;  4AZD A;  2GAE A;  4C2M A;  2JA5 A;  3DMR A;  1VC3 B;  2IV2 X;  1PQF A;  3QC8 A;  2A6H D;  3HU1 A;  5DYI A;  3GTQ A;  1KQG A;  1PT1 A;  1OGY A;  1G8K A;  2B63 A;  1PQH A;  1SMY D;  1TWA A;  2DMR A;  1TWC A;  2E2H A;  1E61 A;  1E60 A;  4KDI A;  2WB1 A;  1K83 A;  4GA5 A;  1YNN D;  2WAQ A;  1E5V A;  2JIP A;  1QCS A;  1Y1V A;  2NYA A;  1Y5I A;  1TWG A;  2V3V A;  3IR5 A;  2VPX A;  1TWF A;  3CZB A;  2PJH B;  5T5M D;  2JA6 A;  1R7R A;  1AW8 B;  2R7Z A;  1E18 A;  1I3Q A;  1YLE A;  3QQ8 A;  2PJJ A;  1QDN A;  1WLF A;  3GTO A;  1PYQ A;  2JIR A;  2JIQ A;  3GTM A;  2NAP A;  2BE5 D;  1CZ5 A;  1TMO A;  4QIW A;  1Y4Z A;  2VPY A;  3IR7 A;  4AYB A;  3QQ7 A;  5B6C A;  2R93 A;  3CQZ A;  2VPW A;  2JA7 A;  1G8J A;  4KOD A;  3OUG A;  3HU3 A;  2YU9 A;  4CRY G;  2PIC A;  5T5I D;  3GTJ A;  5FTL A;  1KQF A;  1PQE A;  4NOH A;  2R92 A;  2E2I A;  2JIM A;  2AE0 X;  4RV0 A;  4KDL A;  5FTN A;  5FTJ A;  3GTL A;  3GTG A;  2CW0 D;  2EEO B;  5DYG A;  2E7Z A;  2NVY A;  1ZYR D;  2A68 D;  3GTP A;  3PLX B;  3CF2 A;  2Y0S A;  4D7Z B;  1FDO A;  2A6E D;  5GLF A;  2A69 D;  3GTK A;  1DMR A;  3H0G A;  1I50 A;  2NVX A;  1UHE A;  3TIW A;  1R9T A;  1SFO A;  1WCM A;  1EU1 A;  1AA6 A;  5FTK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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