4CS0A

Direct visualisation of strain-induced protein post-translational modification
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
127
structure length
126
Chain Sequence
SMIRTMLQGKLHRVKVTHADLHYEGACAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTAKAIPVQVA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Structure of the Pand/Panz Protein Complex Reveals Negative Feedback Regulation of Pantothenate Biosynthesis by Coenzyme A.
pubmed doi rcsb
source organism Escherichia coli k-12
molecule tags Lyase
molecule keywords ASPARTATE 1-DECARBOXYLASE
total genus 33
structure length 126
sequence length 127
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2014-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 4cs0A00
1PYQA 1WCMA 2JIPA 1G8JA 1E60A 3QQ7A 3GTQA 1KQGA 2V45A 4DMRA 4KDLA 1Q16A 3TM7B 1Y4ZA 3TIWA 2YU9A 2Y0SA 1CZ4A 1KQFA 2VPXA 2C45A 3GTJA 5T5MD 3GTPA 3IR6A 4D7ZB 3IR5A 2PMZA 1TWGA 2V3VA 2WAQA 1PQEA 2JA5A 3HU2A 4AAYA 5FTKA 1K83A 4GA5A 1R9TA 1UHDA 1E18A 1H0HA 2NVYA 4AONB 3ML1A 1PT1A 3DMRA 2VUMA 1Y1VA 1PQHA 4CRZA 3FKIA 5DYGA 1SFOA 2JA7A 1FDIA 1UHEA 1TWCA 5FTNA 4KO8A 1QCSA 4QIWA 3OUGA 5FTMA 1SIWA 1DMRA 2JIOA 1WLFA 1TWFA 4C2MA 2JIMA 1EU1A 4AZDA 1I3QA 3GTOA 2KI8A 5FTLA 5C18A 2R92A 3HU1A 3QQ8A 2JA6A 2E2IA 1DMSA 1AA6A 1PYUB 2JIQA 2EEOB 3QC8A 1CZ5A 4KODA 3GTLA 1PQFA 2IV2X 4KLNA 2E7ZA 1R7RA 2B63A 2VPYA 1E5VA 2NYAA 1TMOA 2DMRA 1QDNA 3GTKA 5GLFA 3O5AA 3PLXB 1PT0A 1AW8B 2R7ZA 2JIRA 1H5NA 5EPPA 1E32A 1Y1WA 2E2HA 5T5ID 5C1BA 2R93A 5DYIA 4CRYG 1TWAA 4KDIA 3H0GA 4AYBA 4RV0A 3GTGA 1YLEA 1Y5IA 4AOKB 1OGYA 1R27A 5FTJA 1CR5A 4GA6A 1G8KA 1PPYA 1E61A 1IW7D 3HKZA 1FDOA 1VC3B 3IR7A 3QWZA 4CS0A 1TWHA 2NAPA 1S3SA 2WB1A 2VPZA 3GTMA 3CF2A 3HU3A 3CQZA 2PJHB 5B6CA 2VPWA 2NVXA 1I50A
chains in the Genus database with same CATH superfamily
1PYQA 1WCMA 2JIPA 1G8JA 2A69D 1E60A 3D30A 3QQ7A 4FERA 3GTQA 1N10A 1KQGA 2V45A 4DMRA 4KDLA 1Q16A 3TM7B 2PNWA 2BE5D 1Y4ZA 5GLYA 3TIWA 3X2NA 2YU9A 2Y0SA 1CZ4A 1KQFA 2G5DA 2VPXA 2C45A 3GTJA 5T5MD 3GTPA 3IR6A 4D7ZB 2PI8A 3CZBA 3IR5A 3X2PA 4FFTA 2PMZA 1TWGA 2V3VA 2WAQA 2YUJA 1ZC1A 1PQEA 1OA9A 4JJOA 2JA5A 2BH0A 1L8FA 3SULA 3HU2A 4AAYA 1YNJD 5FTKA 1K83A 1BW4A 4GA5A 1R9TA 1UHDA 1E18A 2A6HD 1H0HA 2O5JD 2NVYA 4AONB 3ML1A 1PT1A 3DMRA 2VUMA 3X2GA 1Y1VA 4ZM7A 1PQHA 4CRZA 3FKIA 5DYGA 1SFOA 2JA7A 1FDIA 1UHEA 1TWCA 5FTNA 2GAEA 4FG2A 4KO8A 1QCSA 4QIWA 5GM9A 3OUGA 5FTMA 1BW3A 1SIWA 4JP7A 3M3GA 1DMRA 5H4UA 2JIOA 4AVRA 1TWFA 1WLFA 4C2MA 2JIMA 1EU1A 4AZDA 1I3QA 3GTOA 3X2JA 2ENGA 2KI8A 5FTLA 3X2LA 5C18A 1SMYD 2R92A 2HCZX 3HU1A 5GLXA 3QQ8A 2JA6A 2E2IA 1DMSA 3X2IA 1AA6A 1PYUB 2JIQA 1WC2A 2EEOB 3X2MA 3QC8A 1CZ5A 4KODA 3GTLA 1PQFA 2IV2X 2G6GA 4KLNA 3X2KA 2PICA 2E7ZA 1YNND 1R7RA 4L48A 2B63A 2PJJA 2A68D 1E5VA 2VPYA 2NYAA 1TMOA 2A6ED 3X2OA 2DMRA 1QDNA 3SUKA 4JP6A 3GTKA 5GLFA 3O5AA 3PLXB 1PT0A 1AW8B 4JCWA 2R7ZA 2JIRA 1H5NA 5EPPA 1E32A 4NOHA 1Y1WA 2E2HA 2KQAA 5T5ID 5C1BA 2R93A 1OA7A 5DYIA 4CRYG 4FG4A 1TWAA 3X2HA 4KDIA 3H0GA 4AYBA 4RV0A 4JS7A 3SUMA 1YLEA 3GTGA 1ZYRD 1Y5IA 3SUJA 4AOKB 1OGYA 1R27A 5FTJA 1HD5A 1CR5A 3ENGA 2AE0X 4GA6A 1G8KA 1E61A 1PPYA 1IW7D 1VC3B 1FDOA 3HKZA 3IR7A 3QWZA 4CS0A 1TWHA 2NAPA 1S3SA 2WB1A 2VPZA 3GTMA 2CW0D 4ENGA 3CF2A 3HU3A 3CQZA 2PJHB 5B6CA 2VPWA 2NVXA 1I50A
chains in the Genus database with same CATH topology
1PYQA 1WCMA 2JIPA 1G8JA 2A69D 1E60A 3QQ7A 3GTQA 1KQGA 2V45A 4DMRA 4KDLA 1Q16A 3TM7B 2PNWA 2BE5D 1Y4ZA 3TIWA 2YU9A 2Y0SA 1CZ4A 1KQFA 2G5DA 2VPXA 2C45A 3GTJA 5T5MD 3GTPA 3IR6A 4D7ZB 2PI8A 3CZBA 3IR5A 2PMZA 1TWGA 2V3VA 2WAQA 2YUJA 1ZC1A 1PQEA 2JA5A 3HU2A 4AAYA 1YNJD 5FTKA 1K83A 4GA5A 1R9TA 1UHDA 1E18A 2A6HD 1H0HA 2O5JD 2NVYA 4AONB 3ML1A 1PT1A 3DMRA 2VUMA 1Y1VA 1PQHA 4CRZA 3FKIA 5DYGA 1SFOA 2JA7A 1FDIA 1UHEA 1TWCA 5FTNA 2GAEA 4KO8A 1QCSA 4QIWA 3OUGA 5FTMA 1SIWA 1DMRA 2JIOA 1WLFA 1TWFA 4C2MA 2JIMA 1EU1A 4AZDA 1I3QA 3GTOA 2KI8A 5FTLA 5C18A 1SMYD 2R92A 3HU1A 3QQ8A 2JA6A 2E2IA 1DMSA 1AA6A 1PYUB 2JIQA 2EEOB 3QC8A 1CZ5A 4KODA 3GTLA 1PQFA 2IV2X 2G6GA 4KLNA 2PICA 2E7ZA 1YNND 1R7RA 2B63A 2PJJA 2A68D 1E5VA 2VPYA 2NYAA 1TMOA 2A6ED 2DMRA 1QDNA 3GTKA 5GLFA 3O5AA 3PLXB 1PT0A 1AW8B 2R7ZA 2JIRA 1H5NA 5EPPA 1E32A 4NOHA 1Y1WA 2E2HA 5T5ID 5C1BA 2R93A 5DYIA 4CRYG 1TWAA 4KDIA 3H0GA 4AYBA 4RV0A 3GTGA 1YLEA 1ZYRD 1Y5IA 4AOKB 1OGYA 1R27A 5FTJA 1CR5A 2AE0X 4GA6A 1G8KA 1PPYA 1E61A 1IW7D 1VC3B 1FDOA 3HKZA 3IR7A 3QWZA 4CS0A 1TWHA 2NAPA 1S3SA 2WB1A 2VPZA 3GTMA 2CW0D 3CF2A 3HU3A 3CQZA 2PJHB 5B6CA 2VPWA 2NVXA 1I50A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PYQ A;  1WCM A;  2JIP A;  1G8J A;  1E60 A;  3QQ7 A;  3GTQ A;  1KQG A;  2V45 A;  4DMR A;  4KDL A;  1Q16 A;  3TM7 B;  1Y4Z A;  3TIW A;  2YU9 A;  2Y0S A;  1CZ4 A;  1KQF A;  2VPX A;  2C45 A;  3GTJ A;  5T5M D;  3GTP A;  3IR6 A;  4D7Z B;  3IR5 A;  2PMZ A;  1TWG A;  2V3V A;  2WAQ A;  1PQE A;  2JA5 A;  3HU2 A;  4AAY A;  5FTK A;  1K83 A;  4GA5 A;  1R9T A;  1UHD A;  1E18 A;  1H0H A;  2NVY A;  4AON B;  3ML1 A;  1PT1 A;  3DMR A;  2VUM A;  1Y1V A;  1PQH A;  4CRZ A;  3FKI A;  5DYG A;  1SFO A;  2JA7 A;  1FDI A;  1UHE A;  1TWC A;  5FTN A;  4KO8 A;  1QCS A;  4QIW A;  3OUG A;  5FTM A;  1SIW A;  1DMR A;  2JIO A;  1WLF A;  1TWF A;  4C2M A;  2JIM A;  1EU1 A;  4AZD A;  1I3Q A;  3GTO A;  2KI8 A;  5FTL A;  5C18 A;  2R92 A;  3HU1 A;  3QQ8 A;  2JA6 A;  2E2I A;  1DMS A;  1AA6 A;  1PYU B;  2JIQ A;  2EEO B;  3QC8 A;  1CZ5 A;  4KOD A;  3GTL A;  1PQF A;  2IV2 X;  4KLN A;  2E7Z A;  1R7R A;  2B63 A;  2VPY A;  1E5V A;  2NYA A;  1TMO A;  2DMR A;  1QDN A;  3GTK A;  5GLF A;  3O5A A;  3PLX B;  1PT0 A;  1AW8 B;  2R7Z A;  2JIR A;  1H5N A;  5EPP A;  1E32 A;  1Y1W A;  2E2H A;  5T5I D;  5C1B A;  2R93 A;  5DYI A;  4CRY G;  1TWA A;  4KDI A;  3H0G A;  4AYB A;  4RV0 A;  3GTG A;  1YLE A;  1Y5I A;  4AOK B;  1OGY A;  1R27 A;  5FTJ A;  1CR5 A;  4GA6 A;  1G8K A;  1PPY A;  1E61 A;  1IW7 D;  3HKZ A;  1FDO A;  1VC3 B;  3IR7 A;  3QWZ A;  4CS0 A;  1TWH A;  2NAP A;  1S3S A;  2WB1 A;  2VPZ A;  3GTM A;  3CF2 A;  3HU3 A;  3CQZ A;  2PJH B;  5B6C A;  2VPW A;  2NVX A;  1I50 A; 
#chains in the Genus database with same CATH topology
 1PYQ A;  1WCM A;  2JIP A;  1G8J A;  2A69 D;  1E60 A;  3D30 A;  3QQ7 A;  4FER A;  3GTQ A;  1N10 A;  1KQG A;  2V45 A;  4DMR A;  4KDL A;  1Q16 A;  3TM7 B;  2PNW A;  2BE5 D;  1Y4Z A;  5GLY A;  3TIW A;  3X2N A;  2YU9 A;  2Y0S A;  1CZ4 A;  1KQF A;  2G5D A;  2VPX A;  2C45 A;  3GTJ A;  5T5M D;  3GTP A;  3IR6 A;  4D7Z B;  2PI8 A;  3CZB A;  3IR5 A;  3X2P A;  4FFT A;  2PMZ A;  1TWG A;  2V3V A;  2WAQ A;  2YUJ A;  1ZC1 A;  1PQE A;  1OA9 A;  4JJO A;  2JA5 A;  2BH0 A;  1L8F A;  3SUL A;  3HU2 A;  4AAY A;  1YNJ D;  5FTK A;  1K83 A;  1BW4 A;  4GA5 A;  1R9T A;  1UHD A;  1E18 A;  2A6H D;  1H0H A;  2O5J D;  2NVY A;  4AON B;  3ML1 A;  1PT1 A;  3DMR A;  2VUM A;  3X2G A;  1Y1V A;  4ZM7 A;  1PQH A;  4CRZ A;  3FKI A;  5DYG A;  1SFO A;  2JA7 A;  1FDI A;  1UHE A;  1TWC A;  5FTN A;  2GAE A;  4FG2 A;  4KO8 A;  1QCS A;  4QIW A;  5GM9 A;  3OUG A;  5FTM A;  1BW3 A;  1SIW A;  4JP7 A;  3M3G A;  1DMR A;  5H4U A;  2JIO A;  4AVR A;  1TWF A;  1WLF A;  4C2M A;  2JIM A;  1EU1 A;  4AZD A;  1I3Q A;  3GTO A;  3X2J A;  2ENG A;  2KI8 A;  5FTL A;  3X2L A;  5C18 A;  1SMY D;  2R92 A;  2HCZ X;  3HU1 A;  5GLX A;  3QQ8 A;  2JA6 A;  2E2I A;  1DMS A;  3X2I A;  1AA6 A;  1PYU B;  2JIQ A;  1WC2 A;  2EEO B;  3X2M A;  3QC8 A;  1CZ5 A;  4KOD A;  3GTL A;  1PQF A;  2IV2 X;  2G6G A;  4KLN A;  3X2K A;  2PIC A;  2E7Z A;  1YNN D;  1R7R A;  4L48 A;  2B63 A;  2PJJ A;  2A68 D;  1E5V A;  2VPY A;  2NYA A;  1TMO A;  2A6E D;  3X2O A;  2DMR A;  1QDN A;  3SUK A;  4JP6 A;  3GTK A;  5GLF A;  3O5A A;  3PLX B;  1PT0 A;  1AW8 B;  4JCW A;  2R7Z A;  2JIR A;  1H5N A;  5EPP A;  1E32 A;  4NOH A;  1Y1W A;  2E2H A;  2KQA A;  5T5I D;  5C1B A;  2R93 A;  1OA7 A;  5DYI A;  4CRY G;  4FG4 A;  1TWA A;  3X2H A;  4KDI A;  3H0G A;  4AYB A;  4RV0 A;  4JS7 A;  3SUM A;  1YLE A;  3GTG A;  1ZYR D;  1Y5I A;  3SUJ A;  4AOK B;  1OGY A;  1R27 A;  5FTJ A;  1HD5 A;  1CR5 A;  3ENG A;  2AE0 X;  4GA6 A;  1G8K A;  1E61 A;  1PPY A;  1IW7 D;  1VC3 B;  1FDO A;  3HKZ A;  3IR7 A;  3QWZ A;  4CS0 A;  1TWH A;  2NAP A;  1S3S A;  2WB1 A;  2VPZ A;  3GTM A;  2CW0 D;  4ENG A;  3CF2 A;  3HU3 A;  3CQZ A;  2PJH B;  5B6C A;  2VPW A;  2NVX A;  1I50 A; 
#chains in the Genus database with same CATH homology
 1PYQ A;  1WCM A;  2JIP A;  1G8J A;  2A69 D;  1E60 A;  3QQ7 A;  3GTQ A;  1KQG A;  2V45 A;  4DMR A;  4KDL A;  1Q16 A;  3TM7 B;  2PNW A;  2BE5 D;  1Y4Z A;  3TIW A;  2YU9 A;  2Y0S A;  1CZ4 A;  1KQF A;  2G5D A;  2VPX A;  2C45 A;  3GTJ A;  5T5M D;  3GTP A;  3IR6 A;  4D7Z B;  2PI8 A;  3CZB A;  3IR5 A;  2PMZ A;  1TWG A;  2V3V A;  2WAQ A;  2YUJ A;  1ZC1 A;  1PQE A;  2JA5 A;  3HU2 A;  4AAY A;  1YNJ D;  5FTK A;  1K83 A;  4GA5 A;  1R9T A;  1UHD A;  1E18 A;  2A6H D;  1H0H A;  2O5J D;  2NVY A;  4AON B;  3ML1 A;  1PT1 A;  3DMR A;  2VUM A;  1Y1V A;  1PQH A;  4CRZ A;  3FKI A;  5DYG A;  1SFO A;  2JA7 A;  1FDI A;  1UHE A;  1TWC A;  5FTN A;  2GAE A;  4KO8 A;  1QCS A;  4QIW A;  3OUG A;  5FTM A;  1SIW A;  1DMR A;  2JIO A;  1WLF A;  1TWF A;  4C2M A;  2JIM A;  1EU1 A;  4AZD A;  1I3Q A;  3GTO A;  2KI8 A;  5FTL A;  5C18 A;  1SMY D;  2R92 A;  3HU1 A;  3QQ8 A;  2JA6 A;  2E2I A;  1DMS A;  1AA6 A;  1PYU B;  2JIQ A;  2EEO B;  3QC8 A;  1CZ5 A;  4KOD A;  3GTL A;  1PQF A;  2IV2 X;  2G6G A;  4KLN A;  2PIC A;  2E7Z A;  1YNN D;  1R7R A;  2B63 A;  2PJJ A;  2A68 D;  1E5V A;  2VPY A;  2NYA A;  1TMO A;  2A6E D;  2DMR A;  1QDN A;  3GTK A;  5GLF A;  3O5A A;  3PLX B;  1PT0 A;  1AW8 B;  2R7Z A;  2JIR A;  1H5N A;  5EPP A;  1E32 A;  4NOH A;  1Y1W A;  2E2H A;  5T5I D;  5C1B A;  2R93 A;  5DYI A;  4CRY G;  1TWA A;  4KDI A;  3H0G A;  4AYB A;  4RV0 A;  3GTG A;  1YLE A;  1ZYR D;  1Y5I A;  4AOK B;  1OGY A;  1R27 A;  5FTJ A;  1CR5 A;  2AE0 X;  4GA6 A;  1G8K A;  1PPY A;  1E61 A;  1IW7 D;  1VC3 B;  1FDO A;  3HKZ A;  3IR7 A;  3QWZ A;  4CS0 A;  1TWH A;  2NAP A;  1S3S A;  2WB1 A;  2VPZ A;  3GTM A;  2CW0 D;  3CF2 A;  3HU3 A;  3CQZ A;  2PJH B;  5B6C A;  2VPW A;  2NVX A;  1I50 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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