4CS0A

Direct visualisation of strain-induced protein post-translational modification
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
127
structure length
126
Chain Sequence
SMIRTMLQGKLHRVKVTHADLHYEGACAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTAKAIPVQVA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ASPARTATE 1-DECARBOXYLASE
publication title The Structure of the Pand/Panz Protein Complex Reveals Negative Feedback Regulation of Pantothenate Biosynthesis by Coenzyme A.
pubmed doi rcsb
source organism Escherichia coli k-12
molecule tags Lyase
total genus 33
structure length 126
sequence length 127
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2014-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 4cs0A00
2NYAA 1R9TA 1PYUB 3GTPA 1TWFA 4KO8A 5EPPA 2YU9A 1R7RA 3FKIA 1PT1A 1UHEA 2VPWA 3CF2A 1H5NA 1WLFA 1Y5IA 5DYGA 1FDIA 1YLEA 4KDIA 3TIWA 3GTKA 3IR7A 5FTLA 4GA6A 5T5MD 2V45A 1Y1WA 2JIOA 2JA7A 2R93A 1QCSA 4AOKB 4CS0A 2EEOB 3IR6A 4QIWA 1I3QA 1K83A 1PPYA 1SIWA 2DMRA 3GTJA 1IW7D 2B63A 1E18A 4CRYG 1CZ4A 4KLNA 2R7ZA 2KI8A 3GTGA 4KDLA 1G8JA 2NVXA 2C45A 4GA5A 3O5AA 1KQGA 1AA6A 5B6CA 3QC8A 5T5ID 1E60A 4KODA 2WAQA 5FTMA 2E7ZA 4AYBA 1TWHA 1G8KA 1WCMA 2VPXA 3HU3A 1TMOA 1CR5A 1DMRA 1E5VA 2JIQA 3GTMA 3OUGA 5C18A 2E2IA 2JIRA 1E61A 2PJHB 1TWCA 1Q16A 2PMZA 3HU1A 3HU2A 4AZDA 1QDNA 5FTNA 2IV2X 1H0HA 2JIMA 3CQZA 2E2HA 2VPZA 4RV0A 5FTKA 1DMSA 1OGYA 2VPYA 1EU1A 1TWAA 1SFOA 2VUMA 1PYQA 1R27A 5C1BA 3IR5A 3QQ8A 5GLFA 1PQFA 2V3VA 3QWZA 1PT0A 2JIPA 4AAYA 4DMRA 1I50A 2JA5A 2WB1A 5FTJA 3HKZA 3QQ7A 3GTQA 3GTLA 3GTOA 1PQHA 1VC3B 1Y4ZA 1S3SA 1UHDA 2NVYA 1TWGA 3H0GA 4AONB 4D7ZB 2JA6A 1PQEA 5DYIA 2Y0SA 4C2MA 1E32A 1AW8B 2NAPA 2R92A 1FDOA 3DMRA 3ML1A 3PLXB 1Y1VA 1KQFA 4CRZA 1CZ5A 3TM7B
chains in the Genus database with same CATH superfamily
2NYAA 1R9TA 1SMYD 1PYUB 3GTPA 1TWFA 4KO8A 5EPPA 2YU9A 1R7RA 3FKIA 1PT1A 1UHEA 2VPWA 3CF2A 1H5NA 1WLFA 1Y5IA 5DYGA 1FDIA 1YLEA 4KDIA 3TIWA 3GTKA 3IR7A 4NOHA 5FTLA 3ENGA 4GA6A 5T5MD 4FG2A 2V45A 1Y1WA 2JIOA 2JA7A 2O5JD 1BW4A 2R93A 1QCSA 4AOKB 4CS0A 2EEOB 3IR6A 4QIWA 1I3QA 1K83A 1PPYA 1SIWA 3X2KA 2A6HD 2DMRA 1IW7D 3GTJA 3X2OA 2B63A 1E18A 4CRYG 1CZ4A 4KLNA 2R7ZA 2KI8A 1WC2A 3GTGA 2BH0A 2A6ED 4KDLA 1G8JA 2NVXA 2C45A 4GA5A 3X2GA 3O5AA 2PICA 3D30A 1KQGA 1ZC1A 5H4UA 1AA6A 5B6CA 3QC8A 5T5ID 1E60A 4KODA 4JP7A 2WAQA 5FTMA 2E7ZA 2PJJA 4AYBA 2HCZX 1TWHA 2GAEA 1G8KA 1WCMA 1OA9A 2CW0D 3SULA 2VPXA 3X2JA 2A69D 4FG4A 1L8FA 3HU3A 1TMOA 1CR5A 1DMRA 1E5VA 2JIQA 4FFTA 3GTMA 4JP6A 5GM9A 3OUGA 5C18A 1ZYRD 2E2IA 2JIRA 4AVRA 1E61A 2PJHB 1TWCA 1Q16A 2PMZA 3HU1A 3HU2A 3M3GA 3X2HA 4AZDA 1QDNA 2YUJA 5FTNA 2IV2X 1H0HA 2JIMA 3CQZA 2E2HA 3X2NA 2KQAA 4ENGA 2VPZA 2BE5D 4RV0A 3SUMA 5FTKA 1DMSA 1OGYA 2ENGA 5GLXA 2VPYA 1EU1A 1TWAA 1SFOA 2PI8A 2VUMA 3X2IA 4FERA 1PYQA 1R27A 5C1BA 3IR5A 3QQ8A 1YNND 2PNWA 5GLFA 1PQFA 2G6GA 3X2LA 2V3VA 3QWZA 1PT0A 4JCWA 2JIPA 4JJOA 4L48A 3SUKA 4JS7A 1N10A 4AAYA 4DMRA 3X2MA 1I50A 2JA5A 2WB1A 5FTJA 3HKZA 1BW3A 3QQ7A 3GTQA 3GTLA 3X2PA 2AE0X 1YNJD 3GTOA 1PQHA 1VC3B 2G5DA 1Y4ZA 1S3SA 1UHDA 2NVYA 1TWGA 3H0GA 1HD5A 4AONB 4D7ZB 2JA6A 3SUJA 1PQEA 4ZM7A 5DYIA 2Y0SA 4C2MA 2A68D 1E32A 1AW8B 2NAPA 2R92A 1FDOA 1OA7A 3DMRA 3ML1A 3CZBA 3PLXB 1Y1VA 5GLYA 1KQFA 4CRZA 1CZ5A 3TM7B
chains in the Genus database with same CATH topology
2NYAA 1R9TA 1SMYD 1PYUB 3GTPA 1TWFA 4KO8A 5EPPA 2YU9A 1R7RA 3FKIA 1PT1A 1UHEA 2VPWA 3CF2A 1H5NA 1WLFA 1Y5IA 5DYGA 1FDIA 1YLEA 4KDIA 3TIWA 3GTKA 3IR7A 4NOHA 5FTLA 4GA6A 5T5MD 2V45A 1Y1WA 2JIOA 2JA7A 2O5JD 2R93A 1QCSA 4AOKB 4CS0A 2EEOB 3IR6A 4QIWA 1I3QA 1K83A 1PPYA 1SIWA 2A6HD 2DMRA 1IW7D 3GTJA 2B63A 1E18A 4CRYG 1CZ4A 4KLNA 2R7ZA 2KI8A 3GTGA 2A6ED 4KDLA 1G8JA 2NVXA 2C45A 4GA5A 3O5AA 2PICA 1KQGA 1ZC1A 1AA6A 5B6CA 3QC8A 5T5ID 1E60A 4KODA 2WAQA 5FTMA 2E7ZA 2PJJA 4AYBA 1TWHA 2GAEA 1G8KA 1WCMA 2CW0D 2VPXA 2A69D 3HU3A 1TMOA 1CR5A 1DMRA 1E5VA 2JIQA 3GTMA 3OUGA 5C18A 1ZYRD 2E2IA 2JIRA 1E61A 2PJHB 1TWCA 1Q16A 2PMZA 3HU1A 3HU2A 4AZDA 1QDNA 2YUJA 5FTNA 2IV2X 1H0HA 2JIMA 3CQZA 2E2HA 2VPZA 2BE5D 4RV0A 5FTKA 1DMSA 1OGYA 2VPYA 1EU1A 1TWAA 1SFOA 2PI8A 2VUMA 1PYQA 1R27A 5C1BA 3IR5A 3QQ8A 1YNND 2PNWA 5GLFA 1PQFA 2G6GA 2V3VA 3QWZA 1PT0A 2JIPA 4AAYA 4DMRA 1I50A 2JA5A 2WB1A 5FTJA 3HKZA 3QQ7A 3GTQA 3GTLA 2AE0X 1YNJD 3GTOA 1PQHA 1VC3B 2G5DA 1Y4ZA 1S3SA 1UHDA 2NVYA 1TWGA 3H0GA 4AONB 4D7ZB 2JA6A 1PQEA 5DYIA 2Y0SA 4C2MA 2A68D 1E32A 1AW8B 2NAPA 2R92A 1FDOA 3DMRA 3ML1A 3CZBA 3PLXB 1Y1VA 1KQFA 4CRZA 1CZ5A 3TM7B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NYA A;  1R9T A;  1PYU B;  3GTP A;  1TWF A;  4KO8 A;  5EPP A;  2YU9 A;  1R7R A;  3FKI A;  1PT1 A;  1UHE A;  2VPW A;  3CF2 A;  1H5N A;  1WLF A;  1Y5I A;  5DYG A;  1FDI A;  1YLE A;  4KDI A;  3TIW A;  3GTK A;  3IR7 A;  5FTL A;  4GA6 A;  5T5M D;  2V45 A;  1Y1W A;  2JIO A;  2JA7 A;  2R93 A;  1QCS A;  4AOK B;  4CS0 A;  2EEO B;  3IR6 A;  4QIW A;  1I3Q A;  1K83 A;  1PPY A;  1SIW A;  2DMR A;  3GTJ A;  1IW7 D;  2B63 A;  1E18 A;  4CRY G;  1CZ4 A;  4KLN A;  2R7Z A;  2KI8 A;  3GTG A;  4KDL A;  1G8J A;  2NVX A;  2C45 A;  4GA5 A;  3O5A A;  1KQG A;  1AA6 A;  5B6C A;  3QC8 A;  5T5I D;  1E60 A;  4KOD A;  2WAQ A;  5FTM A;  2E7Z A;  4AYB A;  1TWH A;  1G8K A;  1WCM A;  2VPX A;  3HU3 A;  1TMO A;  1CR5 A;  1DMR A;  1E5V A;  2JIQ A;  3GTM A;  3OUG A;  5C18 A;  2E2I A;  2JIR A;  1E61 A;  2PJH B;  1TWC A;  1Q16 A;  2PMZ A;  3HU1 A;  3HU2 A;  4AZD A;  1QDN A;  5FTN A;  2IV2 X;  1H0H A;  2JIM A;  3CQZ A;  2E2H A;  2VPZ A;  4RV0 A;  5FTK A;  1DMS A;  1OGY A;  2VPY A;  1EU1 A;  1TWA A;  1SFO A;  2VUM A;  1PYQ A;  1R27 A;  5C1B A;  3IR5 A;  3QQ8 A;  5GLF A;  1PQF A;  2V3V A;  3QWZ A;  1PT0 A;  2JIP A;  4AAY A;  4DMR A;  1I50 A;  2JA5 A;  2WB1 A;  5FTJ A;  3HKZ A;  3QQ7 A;  3GTQ A;  3GTL A;  3GTO A;  1PQH A;  1VC3 B;  1Y4Z A;  1S3S A;  1UHD A;  2NVY A;  1TWG A;  3H0G A;  4AON B;  4D7Z B;  2JA6 A;  1PQE A;  5DYI A;  2Y0S A;  4C2M A;  1E32 A;  1AW8 B;  2NAP A;  2R92 A;  1FDO A;  3DMR A;  3ML1 A;  3PLX B;  1Y1V A;  1KQF A;  4CRZ A;  1CZ5 A;  3TM7 B; 
#chains in the Genus database with same CATH topology
 2NYA A;  1R9T A;  1SMY D;  1PYU B;  3GTP A;  1TWF A;  4KO8 A;  5EPP A;  2YU9 A;  1R7R A;  3FKI A;  1PT1 A;  1UHE A;  2VPW A;  3CF2 A;  1H5N A;  1WLF A;  1Y5I A;  5DYG A;  1FDI A;  1YLE A;  4KDI A;  3TIW A;  3GTK A;  3IR7 A;  4NOH A;  5FTL A;  3ENG A;  4GA6 A;  5T5M D;  4FG2 A;  2V45 A;  1Y1W A;  2JIO A;  2JA7 A;  2O5J D;  1BW4 A;  2R93 A;  1QCS A;  4AOK B;  4CS0 A;  2EEO B;  3IR6 A;  4QIW A;  1I3Q A;  1K83 A;  1PPY A;  1SIW A;  3X2K A;  2A6H D;  2DMR A;  1IW7 D;  3GTJ A;  3X2O A;  2B63 A;  1E18 A;  4CRY G;  1CZ4 A;  4KLN A;  2R7Z A;  2KI8 A;  1WC2 A;  3GTG A;  2BH0 A;  2A6E D;  4KDL A;  1G8J A;  2NVX A;  2C45 A;  4GA5 A;  3X2G A;  3O5A A;  2PIC A;  3D30 A;  1KQG A;  1ZC1 A;  5H4U A;  1AA6 A;  5B6C A;  3QC8 A;  5T5I D;  1E60 A;  4KOD A;  4JP7 A;  2WAQ A;  5FTM A;  2E7Z A;  2PJJ A;  4AYB A;  2HCZ X;  1TWH A;  2GAE A;  1G8K A;  1WCM A;  1OA9 A;  2CW0 D;  3SUL A;  2VPX A;  3X2J A;  2A69 D;  4FG4 A;  1L8F A;  3HU3 A;  1TMO A;  1CR5 A;  1DMR A;  1E5V A;  2JIQ A;  4FFT A;  3GTM A;  4JP6 A;  5GM9 A;  3OUG A;  5C18 A;  1ZYR D;  2E2I A;  2JIR A;  4AVR A;  1E61 A;  2PJH B;  1TWC A;  1Q16 A;  2PMZ A;  3HU1 A;  3HU2 A;  3M3G A;  3X2H A;  4AZD A;  1QDN A;  2YUJ A;  5FTN A;  2IV2 X;  1H0H A;  2JIM A;  3CQZ A;  2E2H A;  3X2N A;  2KQA A;  4ENG A;  2VPZ A;  2BE5 D;  4RV0 A;  3SUM A;  5FTK A;  1DMS A;  1OGY A;  2ENG A;  5GLX A;  2VPY A;  1EU1 A;  1TWA A;  1SFO A;  2PI8 A;  2VUM A;  3X2I A;  4FER A;  1PYQ A;  1R27 A;  5C1B A;  3IR5 A;  3QQ8 A;  1YNN D;  2PNW A;  5GLF A;  1PQF A;  2G6G A;  3X2L A;  2V3V A;  3QWZ A;  1PT0 A;  4JCW A;  2JIP A;  4JJO A;  4L48 A;  3SUK A;  4JS7 A;  1N10 A;  4AAY A;  4DMR A;  3X2M A;  1I50 A;  2JA5 A;  2WB1 A;  5FTJ A;  3HKZ A;  1BW3 A;  3QQ7 A;  3GTQ A;  3GTL A;  3X2P A;  2AE0 X;  1YNJ D;  3GTO A;  1PQH A;  1VC3 B;  2G5D A;  1Y4Z A;  1S3S A;  1UHD A;  2NVY A;  1TWG A;  3H0G A;  1HD5 A;  4AON B;  4D7Z B;  2JA6 A;  3SUJ A;  1PQE A;  4ZM7 A;  5DYI A;  2Y0S A;  4C2M A;  2A68 D;  1E32 A;  1AW8 B;  2NAP A;  2R92 A;  1FDO A;  1OA7 A;  3DMR A;  3ML1 A;  3CZB A;  3PLX B;  1Y1V A;  5GLY A;  1KQF A;  4CRZ A;  1CZ5 A;  3TM7 B; 
#chains in the Genus database with same CATH homology
 2NYA A;  1R9T A;  1SMY D;  1PYU B;  3GTP A;  1TWF A;  4KO8 A;  5EPP A;  2YU9 A;  1R7R A;  3FKI A;  1PT1 A;  1UHE A;  2VPW A;  3CF2 A;  1H5N A;  1WLF A;  1Y5I A;  5DYG A;  1FDI A;  1YLE A;  4KDI A;  3TIW A;  3GTK A;  3IR7 A;  4NOH A;  5FTL A;  4GA6 A;  5T5M D;  2V45 A;  1Y1W A;  2JIO A;  2JA7 A;  2O5J D;  2R93 A;  1QCS A;  4AOK B;  4CS0 A;  2EEO B;  3IR6 A;  4QIW A;  1I3Q A;  1K83 A;  1PPY A;  1SIW A;  2A6H D;  2DMR A;  1IW7 D;  3GTJ A;  2B63 A;  1E18 A;  4CRY G;  1CZ4 A;  4KLN A;  2R7Z A;  2KI8 A;  3GTG A;  2A6E D;  4KDL A;  1G8J A;  2NVX A;  2C45 A;  4GA5 A;  3O5A A;  2PIC A;  1KQG A;  1ZC1 A;  1AA6 A;  5B6C A;  3QC8 A;  5T5I D;  1E60 A;  4KOD A;  2WAQ A;  5FTM A;  2E7Z A;  2PJJ A;  4AYB A;  1TWH A;  2GAE A;  1G8K A;  1WCM A;  2CW0 D;  2VPX A;  2A69 D;  3HU3 A;  1TMO A;  1CR5 A;  1DMR A;  1E5V A;  2JIQ A;  3GTM A;  3OUG A;  5C18 A;  1ZYR D;  2E2I A;  2JIR A;  1E61 A;  2PJH B;  1TWC A;  1Q16 A;  2PMZ A;  3HU1 A;  3HU2 A;  4AZD A;  1QDN A;  2YUJ A;  5FTN A;  2IV2 X;  1H0H A;  2JIM A;  3CQZ A;  2E2H A;  2VPZ A;  2BE5 D;  4RV0 A;  5FTK A;  1DMS A;  1OGY A;  2VPY A;  1EU1 A;  1TWA A;  1SFO A;  2PI8 A;  2VUM A;  1PYQ A;  1R27 A;  5C1B A;  3IR5 A;  3QQ8 A;  1YNN D;  2PNW A;  5GLF A;  1PQF A;  2G6G A;  2V3V A;  3QWZ A;  1PT0 A;  2JIP A;  4AAY A;  4DMR A;  1I50 A;  2JA5 A;  2WB1 A;  5FTJ A;  3HKZ A;  3QQ7 A;  3GTQ A;  3GTL A;  2AE0 X;  1YNJ D;  3GTO A;  1PQH A;  1VC3 B;  2G5D A;  1Y4Z A;  1S3S A;  1UHD A;  2NVY A;  1TWG A;  3H0G A;  4AON B;  4D7Z B;  2JA6 A;  1PQE A;  5DYI A;  2Y0S A;  4C2M A;  2A68 D;  1E32 A;  1AW8 B;  2NAP A;  2R92 A;  1FDO A;  3DMR A;  3ML1 A;  3CZB A;  3PLX B;  1Y1V A;  1KQF A;  4CRZ A;  1CZ5 A;  3TM7 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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