4CRZA

Direct visualisation of strain-induced protein prost-translational modification
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
127
structure length
126
Chain Sequence
SMIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSVYAIAAERGSRIISVNGAAAHASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTAKAIPVQVA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ASPARTATE 1-DECARBOXYLASE
publication title The Structure of the Pand/Panz Protein Complex Reveals Negative Feedback Regulation of Pantothenate Biosynthesis by Coenzyme A.
pubmed doi rcsb
source organism Escherichia coli k-12
molecule tags Lyase
total genus 35
structure length 126
sequence length 127
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2014-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 4crzA00
1R7RA 2E7ZA 4AOKB 2JIPA 1E18A 5T5MD 1WLFA 1AA6A 1QCSA 1I50A 1PT1A 1SFOA 2V3VA 3QQ7A 3TIWA 1CR5A 2JIOA 1R9TA 2PMZA 2VPWA 4DMRA 3CF2A 2NAPA 1E61A 5FTMA 2B63A 3H0GA 2WAQA 3FKIA 1PYQA 2C45A 3IR7A 4QIWA 2PJHB 2IV2X 1PYUB 1PQHA 2WB1A 2JIRA 4KDIA 1KQGA 1Y1WA 1I3QA 1FDIA 1UHEA 2VPYA 1QDNA 4KDLA 4CRZA 1E60A 3GTJA 2VUMA 1E32A 1H5NA 1TWGA 3PLXB 3HU1A 3QWZA 2JA5A 5FTKA 5DYIA 3GTLA 1WCMA 2NVXA 2YU9A 3GTPA 3TM7B 2R7ZA 1PQEA 1KQFA 1IW7D 1PT0A 3QQ8A 5C18A 4AYBA 1TWFA 1Y4ZA 3GTGA 1YLEA 4RV0A 5T5ID 1G8KA 4D7ZB 1CZ5A 5FTNA 2EEOB 1TWCA 1PPYA 5C1BA 2Y0SA 4C2MA 3OUGA 1PQFA 3HU2A 1G8JA 4KODA 2VPXA 2KI8A 3CQZA 4KLNA 2E2HA 2JA6A 1EU1A 3GTOA 4GA6A 5DYGA 1K83A 2R93A 3HU3A 2JIQA 2V45A 3O5AA 5EPPA 4AZDA 1TWAA 1Y1VA 4KO8A 3GTQA 5B6CA 5FTLA 1H0HA 1SIWA 3GTMA 3DMRA 4AAYA 2VPZA 3IR6A 1OGYA 1Y5IA 2R92A 2NVYA 2JA7A 4GA5A 1E5VA 1VC3B 3HKZA 1DMSA 5GLFA 1CZ4A 1UHDA 2JIMA 4CS0A 2DMRA 1S3SA 5FTJA 4CRYG 4AONB 1TWHA 3IR5A 3QC8A 1AW8B 1DMRA 1FDOA 1R27A 3ML1A 2NYAA 2E2IA 1TMOA 1Q16A 3GTKA
chains in the Genus database with same CATH superfamily
1R7RA 2E7ZA 4AOKB 2JIPA 1E18A 2A6HD 2BH0A 5T5MD 1WLFA 1AA6A 1QCSA 4FERA 1I50A 1SMYD 1PT1A 4JP7A 1SFOA 3CZBA 2V3VA 1BW3A 3QQ7A 3TIWA 1CR5A 2JIOA 5GM9A 1L8FA 2HCZX 1R9TA 4FFTA 2PMZA 3SUKA 2VPWA 1HD5A 4DMRA 3D30A 3CF2A 2NAPA 1E61A 5FTMA 2B63A 3H0GA 2WAQA 3FKIA 4FG4A 3SUMA 1PYQA 2C45A 3IR7A 4QIWA 1ZC1A 2PJHB 2IV2X 1PYUB 4NOHA 1PQHA 2WB1A 2JIRA 3M3GA 2CW0D 3X2MA 1WC2A 1N10A 4KDIA 1KQGA 1Y1WA 1I3QA 1FDIA 1UHEA 1BW4A 4FG2A 2VPYA 1QDNA 4KDLA 4CRZA 1E60A 3GTJA 2VUMA 1E32A 3X2IA 1H5NA 1TWGA 3PLXB 2BE5D 4JJOA 2KQAA 3HU1A 5GLXA 5GLYA 3QWZA 2JA5A 5FTKA 2A68D 5DYIA 3X2HA 1WCMA 3GTLA 2NVXA 2YU9A 3X2OA 3TM7B 3GTPA 2R7ZA 2YUJA 1PQEA 4JP6A 3X2PA 1KQFA 1IW7D 1PT0A 3QQ8A 5C18A 4AYBA 1TWFA 1Y4ZA 3GTGA 1YLEA 4L48A 4RV0A 5T5ID 3X2KA 1G8KA 4D7ZB 1CZ5A 5FTNA 2EEOB 1TWCA 2G5DA 1PPYA 4JS7A 3X2GA 5C1BA 2PNWA 2Y0SA 4ZM7A 1OA7A 4C2MA 3OUGA 1PQFA 3HU2A 1G8JA 4KODA 2VPXA 3ENGA 2KI8A 3CQZA 4KLNA 2E2HA 2JA6A 1EU1A 3GTOA 4GA6A 5DYGA 1K83A 2R93A 1YNJD 3HU3A 2JIQA 1ZYRD 2V45A 3O5AA 5EPPA 4AZDA 1TWAA 1Y1VA 4KO8A 3GTQA 5B6CA 5FTLA 1OA9A 1H0HA 1SIWA 3GTMA 3DMRA 4AAYA 2VPZA 3IR6A 1OGYA 1Y5IA 2R92A 2NVYA 2JA7A 1YNND 2PJJA 4GA5A 1E5VA 2AE0X 2PI8A 2PICA 3X2JA 2ENGA 4JCWA 1VC3B 5H4UA 3X2NA 3SUJA 3HKZA 1DMSA 5GLFA 1CZ4A 1UHDA 2JIMA 4CS0A 2DMRA 1S3SA 5FTJA 4CRYG 2O5JD 4AONB 1TWHA 2A6ED 3GTKA 3IR5A 3QC8A 1AW8B 1DMRA 1FDOA 1R27A 2GAEA 3SULA 3ML1A 4AVRA 3X2LA 2NYAA 2G6GA 2E2IA 1TMOA 1Q16A 2A69D 4ENGA
chains in the Genus database with same CATH topology
1R7RA 2E7ZA 4AOKB 2JIPA 1E18A 2A6HD 5T5MD 1WLFA 1AA6A 1QCSA 1I50A 1SMYD 1PT1A 1SFOA 3CZBA 2V3VA 3QQ7A 3TIWA 1CR5A 2JIOA 1R9TA 2PMZA 2VPWA 4DMRA 3CF2A 2NAPA 1E61A 5FTMA 2B63A 3H0GA 2WAQA 3FKIA 1PYQA 2C45A 3IR7A 4QIWA 1ZC1A 2PJHB 2IV2X 1PYUB 4NOHA 1PQHA 2WB1A 2JIRA 2CW0D 4KDIA 1KQGA 1Y1WA 1I3QA 1FDIA 1UHEA 2VPYA 1QDNA 4KDLA 4CRZA 1E60A 3GTJA 2VUMA 1E32A 1H5NA 1TWGA 3PLXB 2BE5D 3HU1A 3QWZA 2JA5A 5FTKA 2A68D 5DYIA 3GTLA 1WCMA 2NVXA 2YU9A 3GTPA 3TM7B 2R7ZA 2YUJA 1PQEA 1KQFA 1IW7D 1PT0A 3QQ8A 5C18A 4AYBA 1TWFA 1Y4ZA 3GTGA 1YLEA 4RV0A 5T5ID 1G8KA 4D7ZB 1CZ5A 5FTNA 2EEOB 1TWCA 2G5DA 1PPYA 5C1BA 2PNWA 2Y0SA 4C2MA 3OUGA 1PQFA 3HU2A 1G8JA 4KODA 2VPXA 2KI8A 3CQZA 4KLNA 2E2HA 2JA6A 1EU1A 3GTOA 4GA6A 5DYGA 1K83A 2R93A 1YNJD 3HU3A 2JIQA 1ZYRD 2V45A 3O5AA 5EPPA 4AZDA 1TWAA 1Y1VA 4KO8A 3GTQA 5B6CA 5FTLA 1H0HA 1SIWA 3GTMA 3DMRA 4AAYA 2VPZA 3IR6A 1OGYA 1Y5IA 2R92A 2NVYA 2JA7A 1YNND 2PJJA 4GA5A 1E5VA 2AE0X 2PI8A 2PICA 1VC3B 3HKZA 1DMSA 5GLFA 1CZ4A 1UHDA 2JIMA 4CS0A 2DMRA 1S3SA 5FTJA 4CRYG 2O5JD 4AONB 1TWHA 2A6ED 3GTKA 3IR5A 3QC8A 1AW8B 1DMRA 1FDOA 1R27A 2GAEA 3ML1A 2NYAA 2G6GA 2E2IA 1TMOA 1Q16A 2A69D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R7R A;  2E7Z A;  4AOK B;  2JIP A;  1E18 A;  5T5M D;  1WLF A;  1AA6 A;  1QCS A;  1I50 A;  1PT1 A;  1SFO A;  2V3V A;  3QQ7 A;  3TIW A;  1CR5 A;  2JIO A;  1R9T A;  2PMZ A;  2VPW A;  4DMR A;  3CF2 A;  2NAP A;  1E61 A;  5FTM A;  2B63 A;  3H0G A;  2WAQ A;  3FKI A;  1PYQ A;  2C45 A;  3IR7 A;  4QIW A;  2PJH B;  2IV2 X;  1PYU B;  1PQH A;  2WB1 A;  2JIR A;  4KDI A;  1KQG A;  1Y1W A;  1I3Q A;  1FDI A;  1UHE A;  2VPY A;  1QDN A;  4KDL A;  4CRZ A;  1E60 A;  3GTJ A;  2VUM A;  1E32 A;  1H5N A;  1TWG A;  3PLX B;  3HU1 A;  3QWZ A;  2JA5 A;  5FTK A;  5DYI A;  3GTL A;  1WCM A;  2NVX A;  2YU9 A;  3GTP A;  3TM7 B;  2R7Z A;  1PQE A;  1KQF A;  1IW7 D;  1PT0 A;  3QQ8 A;  5C18 A;  4AYB A;  1TWF A;  1Y4Z A;  3GTG A;  1YLE A;  4RV0 A;  5T5I D;  1G8K A;  4D7Z B;  1CZ5 A;  5FTN A;  2EEO B;  1TWC A;  1PPY A;  5C1B A;  2Y0S A;  4C2M A;  3OUG A;  1PQF A;  3HU2 A;  1G8J A;  4KOD A;  2VPX A;  2KI8 A;  3CQZ A;  4KLN A;  2E2H A;  2JA6 A;  1EU1 A;  3GTO A;  4GA6 A;  5DYG A;  1K83 A;  2R93 A;  3HU3 A;  2JIQ A;  2V45 A;  3O5A A;  5EPP A;  4AZD A;  1TWA A;  1Y1V A;  4KO8 A;  3GTQ A;  5B6C A;  5FTL A;  1H0H A;  1SIW A;  3GTM A;  3DMR A;  4AAY A;  2VPZ A;  3IR6 A;  1OGY A;  1Y5I A;  2R92 A;  2NVY A;  2JA7 A;  4GA5 A;  1E5V A;  1VC3 B;  3HKZ A;  1DMS A;  5GLF A;  1CZ4 A;  1UHD A;  2JIM A;  4CS0 A;  2DMR A;  1S3S A;  5FTJ A;  4CRY G;  4AON B;  1TWH A;  3IR5 A;  3QC8 A;  1AW8 B;  1DMR A;  1FDO A;  1R27 A;  3ML1 A;  2NYA A;  2E2I A;  1TMO A;  1Q16 A;  3GTK A; 
#chains in the Genus database with same CATH topology
 1R7R A;  2E7Z A;  4AOK B;  2JIP A;  1E18 A;  2A6H D;  2BH0 A;  5T5M D;  1WLF A;  1AA6 A;  1QCS A;  4FER A;  1I50 A;  1SMY D;  1PT1 A;  4JP7 A;  1SFO A;  3CZB A;  2V3V A;  1BW3 A;  3QQ7 A;  3TIW A;  1CR5 A;  2JIO A;  5GM9 A;  1L8F A;  2HCZ X;  1R9T A;  4FFT A;  2PMZ A;  3SUK A;  2VPW A;  1HD5 A;  4DMR A;  3D30 A;  3CF2 A;  2NAP A;  1E61 A;  5FTM A;  2B63 A;  3H0G A;  2WAQ A;  3FKI A;  4FG4 A;  3SUM A;  1PYQ A;  2C45 A;  3IR7 A;  4QIW A;  1ZC1 A;  2PJH B;  2IV2 X;  1PYU B;  4NOH A;  1PQH A;  2WB1 A;  2JIR A;  3M3G A;  2CW0 D;  3X2M A;  1WC2 A;  1N10 A;  4KDI A;  1KQG A;  1Y1W A;  1I3Q A;  1FDI A;  1UHE A;  1BW4 A;  4FG2 A;  2VPY A;  1QDN A;  4KDL A;  4CRZ A;  1E60 A;  3GTJ A;  2VUM A;  1E32 A;  3X2I A;  1H5N A;  1TWG A;  3PLX B;  2BE5 D;  4JJO A;  2KQA A;  3HU1 A;  5GLX A;  5GLY A;  3QWZ A;  2JA5 A;  5FTK A;  2A68 D;  5DYI A;  3X2H A;  1WCM A;  3GTL A;  2NVX A;  2YU9 A;  3X2O A;  3TM7 B;  3GTP A;  2R7Z A;  2YUJ A;  1PQE A;  4JP6 A;  3X2P A;  1KQF A;  1IW7 D;  1PT0 A;  3QQ8 A;  5C18 A;  4AYB A;  1TWF A;  1Y4Z A;  3GTG A;  1YLE A;  4L48 A;  4RV0 A;  5T5I D;  3X2K A;  1G8K A;  4D7Z B;  1CZ5 A;  5FTN A;  2EEO B;  1TWC A;  2G5D A;  1PPY A;  4JS7 A;  3X2G A;  5C1B A;  2PNW A;  2Y0S A;  4ZM7 A;  1OA7 A;  4C2M A;  3OUG A;  1PQF A;  3HU2 A;  1G8J A;  4KOD A;  2VPX A;  3ENG A;  2KI8 A;  3CQZ A;  4KLN A;  2E2H A;  2JA6 A;  1EU1 A;  3GTO A;  4GA6 A;  5DYG A;  1K83 A;  2R93 A;  1YNJ D;  3HU3 A;  2JIQ A;  1ZYR D;  2V45 A;  3O5A A;  5EPP A;  4AZD A;  1TWA A;  1Y1V A;  4KO8 A;  3GTQ A;  5B6C A;  5FTL A;  1OA9 A;  1H0H A;  1SIW A;  3GTM A;  3DMR A;  4AAY A;  2VPZ A;  3IR6 A;  1OGY A;  1Y5I A;  2R92 A;  2NVY A;  2JA7 A;  1YNN D;  2PJJ A;  4GA5 A;  1E5V A;  2AE0 X;  2PI8 A;  2PIC A;  3X2J A;  2ENG A;  4JCW A;  1VC3 B;  5H4U A;  3X2N A;  3SUJ A;  3HKZ A;  1DMS A;  5GLF A;  1CZ4 A;  1UHD A;  2JIM A;  4CS0 A;  2DMR A;  1S3S A;  5FTJ A;  4CRY G;  2O5J D;  4AON B;  1TWH A;  2A6E D;  3GTK A;  3IR5 A;  3QC8 A;  1AW8 B;  1DMR A;  1FDO A;  1R27 A;  2GAE A;  3SUL A;  3ML1 A;  4AVR A;  3X2L A;  2NYA A;  2G6G A;  2E2I A;  1TMO A;  1Q16 A;  2A69 D;  4ENG A; 
#chains in the Genus database with same CATH homology
 1R7R A;  2E7Z A;  4AOK B;  2JIP A;  1E18 A;  2A6H D;  5T5M D;  1WLF A;  1AA6 A;  1QCS A;  1I50 A;  1SMY D;  1PT1 A;  1SFO A;  3CZB A;  2V3V A;  3QQ7 A;  3TIW A;  1CR5 A;  2JIO A;  1R9T A;  2PMZ A;  2VPW A;  4DMR A;  3CF2 A;  2NAP A;  1E61 A;  5FTM A;  2B63 A;  3H0G A;  2WAQ A;  3FKI A;  1PYQ A;  2C45 A;  3IR7 A;  4QIW A;  1ZC1 A;  2PJH B;  2IV2 X;  1PYU B;  4NOH A;  1PQH A;  2WB1 A;  2JIR A;  2CW0 D;  4KDI A;  1KQG A;  1Y1W A;  1I3Q A;  1FDI A;  1UHE A;  2VPY A;  1QDN A;  4KDL A;  4CRZ A;  1E60 A;  3GTJ A;  2VUM A;  1E32 A;  1H5N A;  1TWG A;  3PLX B;  2BE5 D;  3HU1 A;  3QWZ A;  2JA5 A;  5FTK A;  2A68 D;  5DYI A;  3GTL A;  1WCM A;  2NVX A;  2YU9 A;  3GTP A;  3TM7 B;  2R7Z A;  2YUJ A;  1PQE A;  1KQF A;  1IW7 D;  1PT0 A;  3QQ8 A;  5C18 A;  4AYB A;  1TWF A;  1Y4Z A;  3GTG A;  1YLE A;  4RV0 A;  5T5I D;  1G8K A;  4D7Z B;  1CZ5 A;  5FTN A;  2EEO B;  1TWC A;  2G5D A;  1PPY A;  5C1B A;  2PNW A;  2Y0S A;  4C2M A;  3OUG A;  1PQF A;  3HU2 A;  1G8J A;  4KOD A;  2VPX A;  2KI8 A;  3CQZ A;  4KLN A;  2E2H A;  2JA6 A;  1EU1 A;  3GTO A;  4GA6 A;  5DYG A;  1K83 A;  2R93 A;  1YNJ D;  3HU3 A;  2JIQ A;  1ZYR D;  2V45 A;  3O5A A;  5EPP A;  4AZD A;  1TWA A;  1Y1V A;  4KO8 A;  3GTQ A;  5B6C A;  5FTL A;  1H0H A;  1SIW A;  3GTM A;  3DMR A;  4AAY A;  2VPZ A;  3IR6 A;  1OGY A;  1Y5I A;  2R92 A;  2NVY A;  2JA7 A;  1YNN D;  2PJJ A;  4GA5 A;  1E5V A;  2AE0 X;  2PI8 A;  2PIC A;  1VC3 B;  3HKZ A;  1DMS A;  5GLF A;  1CZ4 A;  1UHD A;  2JIM A;  4CS0 A;  2DMR A;  1S3S A;  5FTJ A;  4CRY G;  2O5J D;  4AON B;  1TWH A;  2A6E D;  3GTK A;  3IR5 A;  3QC8 A;  1AW8 B;  1DMR A;  1FDO A;  1R27 A;  2GAE A;  3ML1 A;  2NYA A;  2G6G A;  2E2I A;  1TMO A;  1Q16 A;  2A69 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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