4CRZA

Direct visualisation of strain-induced protein prost-translational modification
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
127
structure length
126
Chain Sequence
SMIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSVYAIAAERGSRIISVNGAAAHASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTAKAIPVQVA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Structure of the Pand/Panz Protein Complex Reveals Negative Feedback Regulation of Pantothenate Biosynthesis by Coenzyme A.
pubmed doi rcsb
source organism Escherichia coli k-12
molecule tags Lyase
molecule keywords ASPARTATE 1-DECARBOXYLASE
total genus 35
structure length 126
sequence length 127
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2014-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 4crzA00
1OGYA 1E61A 2E7ZA 1PPYA 3QQ7A 3OUGA 3HU2A 1FDIA 3CQZA 4AYBA 2EEOB 3TM7B 4KODA 1E18A 1UHDA 1VC3B 2R92A 3TIWA 1E5VA 1QDNA 5DYIA 2KI8A 2V3VA 1H5NA 1Y5IA 5C18A 1R9TA 1I50A 2WB1A 2R7ZA 5DYGA 1UHEA 1AA6A 4KDLA 2JIMA 1YLEA 5EPPA 3QWZA 1TWAA 4CS0A 2JIRA 1SFOA 2YU9A 1Y1VA 5FTJA 2VPYA 1TWCA 2DMRA 3GTKA 3CF2A 4QIWA 4DMRA 3ML1A 1G8JA 1PYQA 2VPWA 1TWHA 2JA6A 1SIWA 1Y1WA 3PLXB 3QC8A 1H0HA 2E2HA 2C45A 2JIOA 4AAYA 1G8KA 1QCSA 1DMRA 2NAPA 2PMZA 1PYUB 1R27A 2WAQA 1KQFA 1FDOA 3IR6A 1I3QA 4KLNA 2NVYA 4D7ZB 1TMOA 4RV0A 5C1BA 1Q16A 1CZ5A 1PT0A 3GTQA 2PJHB 1PT1A 4KDIA 3GTMA 4C2MA 1TWFA 2R93A 2JIPA 3IR7A 2VPZA 4AONB 4CRZA 1PQFA 1KQGA 4GA6A 1R7RA 3H0GA 1E32A 1TWGA 4KO8A 4GA5A 1WLFA 2NYAA 3DMRA 2JA7A 5FTLA 2IV2X 1PQHA 3QQ8A 3HU1A 3HU3A 1AW8B 3GTGA 3GTLA 2VPXA 5FTKA 1IW7D 2JA5A 3FKIA 1E60A 3GTPA 2E2IA 3HKZA 1EU1A 1Y4ZA 5FTNA 3O5AA 5B6CA 1DMSA 2VUMA 2B63A 1S3SA 1CR5A 5T5ID 4AOKB 1CZ4A 5T5MD 1WCMA 2JIQA 2NVXA 3IR5A 5FTMA 2V45A 5GLFA 1PQEA 4AZDA 2Y0SA 1K83A 4CRYG 3GTOA 3GTJA
chains in the Genus database with same CATH superfamily
1OGYA 1E61A 3X2LA 2E7ZA 1PPYA 3QQ7A 2ENGA 3OUGA 3HU2A 1FDIA 3CQZA 3M3GA 4AYBA 1ZYRD 2EEOB 3TM7B 4KODA 1E18A 1UHDA 1VC3B 1BW3A 2R92A 3TIWA 1E5VA 1QDNA 5DYIA 1L8FA 2KI8A 2V3VA 1H5NA 1Y5IA 5C18A 1R9TA 1I50A 3SUMA 1BW4A 2WB1A 4FG2A 2R7ZA 5DYGA 3X2PA 1UHEA 1AA6A 3CZBA 4KDLA 2CW0D 2JIMA 1YLEA 3X2NA 3X2KA 4L48A 2BE5D 3SUKA 5EPPA 3QWZA 1TWAA 4CS0A 2JIRA 1SFOA 2YU9A 1Y1VA 5FTJA 2VPYA 1OA7A 1TWCA 2DMRA 3X2GA 5GM9A 4FFTA 3CF2A 3GTKA 2HCZX 4QIWA 4DMRA 2PI8A 3ML1A 1G8JA 1PYQA 1SMYD 2VPWA 1TWHA 2JA6A 3X2JA 1SIWA 1Y1WA 3PLXB 3QC8A 1HD5A 1H0HA 2E2HA 2C45A 2JIOA 4AAYA 1G8KA 1QCSA 4NOHA 1DMRA 2NAPA 2PMZA 1PYUB 1R27A 2WAQA 3ENGA 1KQFA 1FDOA 3IR6A 1I3QA 4KLNA 2NVYA 4D7ZB 1TMOA 4RV0A 4JJOA 5H4UA 5C1BA 1Q16A 3X2OA 1CZ5A 1PT0A 3GTQA 2PJHB 1PT1A 1WC2A 4KDIA 3SULA 4C2MA 3GTMA 1TWFA 2R93A 3X2MA 2JIPA 2GAEA 3IR7A 2VPZA 4AONB 4CRZA 1PQFA 4AVRA 4ENGA 2BH0A 4ZM7A 1KQGA 4GA6A 3GTOA 1R7RA 3X2HA 2G5DA 3H0GA 1E32A 1TWGA 2G6GA 4KO8A 4GA5A 2AE0X 5GLXA 1WLFA 2NYAA 1ZC1A 3DMRA 4JP6A 2JA7A 4JS7A 5FTLA 4JP7A 2IV2X 1PQHA 2A69D 3X2IA 2KQAA 3QQ8A 1OA9A 3HU1A 3HU3A 1AW8B 3SUJA 3GTGA 3GTLA 2VPXA 5FTKA 1IW7D 2A6HD 2JA5A 3FKIA 2A68D 1E60A 1YNND 3GTPA 2E2IA 2A6ED 3HKZA 1EU1A 1Y4ZA 5FTNA 5GLYA 3D30A 3O5AA 5B6CA 2O5JD 1DMSA 2VUMA 2B63A 4FERA 1S3SA 1CR5A 5T5ID 4AOKB 1CZ4A 2PICA 5T5MD 1WCMA 2YUJA 2JIQA 2NVXA 3IR5A 1YNJD 5FTMA 2V45A 5GLFA 1PQEA 2PJJA 4AZDA 2Y0SA 1K83A 2PNWA 1N10A 4JCWA 4CRYG 4FG4A 3GTJA
chains in the Genus database with same CATH topology
1OGYA 1E61A 2E7ZA 1PPYA 3QQ7A 3OUGA 3HU2A 1FDIA 3CQZA 4AYBA 1ZYRD 2EEOB 3TM7B 4KODA 1E18A 1UHDA 1VC3B 2R92A 3TIWA 1E5VA 1QDNA 5DYIA 2V3VA 2KI8A 1H5NA 1Y5IA 5C18A 1R9TA 1I50A 2WB1A 2R7ZA 5DYGA 1UHEA 1AA6A 3CZBA 4KDLA 2CW0D 2JIMA 1YLEA 2BE5D 5EPPA 3QWZA 1TWAA 4CS0A 2JIRA 1SFOA 2YU9A 1Y1VA 5FTJA 2VPYA 1TWCA 2DMRA 3GTKA 3CF2A 4QIWA 4DMRA 2PI8A 3ML1A 1G8JA 1PYQA 1SMYD 2VPWA 1TWHA 2JA6A 1SIWA 1Y1WA 3PLXB 3QC8A 1H0HA 2E2HA 2C45A 2JIOA 4AAYA 1G8KA 1QCSA 4NOHA 1DMRA 2NAPA 2PMZA 1PYUB 1R27A 2WAQA 1KQFA 1FDOA 3IR6A 1I3QA 4KLNA 2NVYA 4D7ZB 1TMOA 4RV0A 5C1BA 1Q16A 1CZ5A 1PT0A 3GTQA 2PJHB 1PT1A 4KDIA 3GTMA 4C2MA 1TWFA 2R93A 2JIPA 2GAEA 3IR7A 2VPZA 4AONB 4CRZA 1PQFA 1KQGA 4GA6A 1R7RA 2G5DA 3H0GA 1E32A 1TWGA 2G6GA 4KO8A 4GA5A 2AE0X 1WLFA 2NYAA 1ZC1A 3DMRA 2JA7A 5FTLA 2IV2X 1PQHA 2A69D 3QQ8A 3HU1A 3HU3A 1AW8B 3GTGA 3GTLA 2VPXA 5FTKA 1IW7D 2A6HD 2JA5A 3FKIA 2A68D 1E60A 1YNND 3GTPA 2E2IA 2A6ED 3HKZA 1EU1A 1Y4ZA 5FTNA 3O5AA 5B6CA 2O5JD 1DMSA 2VUMA 2B63A 1S3SA 1CR5A 5T5ID 4AOKB 1CZ4A 2PICA 5T5MD 1WCMA 2YUJA 2JIQA 2NVXA 3IR5A 1YNJD 5FTMA 2V45A 5GLFA 1PQEA 2PJJA 4AZDA 2Y0SA 1K83A 2PNWA 4CRYG 3GTOA 3GTJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OGY A;  1E61 A;  2E7Z A;  1PPY A;  3QQ7 A;  3OUG A;  3HU2 A;  1FDI A;  3CQZ A;  4AYB A;  2EEO B;  3TM7 B;  4KOD A;  1E18 A;  1UHD A;  1VC3 B;  2R92 A;  3TIW A;  1E5V A;  1QDN A;  5DYI A;  2KI8 A;  2V3V A;  1H5N A;  1Y5I A;  5C18 A;  1R9T A;  1I50 A;  2WB1 A;  2R7Z A;  5DYG A;  1UHE A;  1AA6 A;  4KDL A;  2JIM A;  1YLE A;  5EPP A;  3QWZ A;  1TWA A;  4CS0 A;  2JIR A;  1SFO A;  2YU9 A;  1Y1V A;  5FTJ A;  2VPY A;  1TWC A;  2DMR A;  3GTK A;  3CF2 A;  4QIW A;  4DMR A;  3ML1 A;  1G8J A;  1PYQ A;  2VPW A;  1TWH A;  2JA6 A;  1SIW A;  1Y1W A;  3PLX B;  3QC8 A;  1H0H A;  2E2H A;  2C45 A;  2JIO A;  4AAY A;  1G8K A;  1QCS A;  1DMR A;  2NAP A;  2PMZ A;  1PYU B;  1R27 A;  2WAQ A;  1KQF A;  1FDO A;  3IR6 A;  1I3Q A;  4KLN A;  2NVY A;  4D7Z B;  1TMO A;  4RV0 A;  5C1B A;  1Q16 A;  1CZ5 A;  1PT0 A;  3GTQ A;  2PJH B;  1PT1 A;  4KDI A;  3GTM A;  4C2M A;  1TWF A;  2R93 A;  2JIP A;  3IR7 A;  2VPZ A;  4AON B;  4CRZ A;  1PQF A;  1KQG A;  4GA6 A;  1R7R A;  3H0G A;  1E32 A;  1TWG A;  4KO8 A;  4GA5 A;  1WLF A;  2NYA A;  3DMR A;  2JA7 A;  5FTL A;  2IV2 X;  1PQH A;  3QQ8 A;  3HU1 A;  3HU3 A;  1AW8 B;  3GTG A;  3GTL A;  2VPX A;  5FTK A;  1IW7 D;  2JA5 A;  3FKI A;  1E60 A;  3GTP A;  2E2I A;  3HKZ A;  1EU1 A;  1Y4Z A;  5FTN A;  3O5A A;  5B6C A;  1DMS A;  2VUM A;  2B63 A;  1S3S A;  1CR5 A;  5T5I D;  4AOK B;  1CZ4 A;  5T5M D;  1WCM A;  2JIQ A;  2NVX A;  3IR5 A;  5FTM A;  2V45 A;  5GLF A;  1PQE A;  4AZD A;  2Y0S A;  1K83 A;  4CRY G;  3GTO A;  3GTJ A; 
#chains in the Genus database with same CATH topology
 1OGY A;  1E61 A;  3X2L A;  2E7Z A;  1PPY A;  3QQ7 A;  2ENG A;  3OUG A;  3HU2 A;  1FDI A;  3CQZ A;  3M3G A;  4AYB A;  1ZYR D;  2EEO B;  3TM7 B;  4KOD A;  1E18 A;  1UHD A;  1VC3 B;  1BW3 A;  2R92 A;  3TIW A;  1E5V A;  1QDN A;  5DYI A;  1L8F A;  2KI8 A;  2V3V A;  1H5N A;  1Y5I A;  5C18 A;  1R9T A;  1I50 A;  3SUM A;  1BW4 A;  2WB1 A;  4FG2 A;  2R7Z A;  5DYG A;  3X2P A;  1UHE A;  1AA6 A;  3CZB A;  4KDL A;  2CW0 D;  2JIM A;  1YLE A;  3X2N A;  3X2K A;  4L48 A;  2BE5 D;  3SUK A;  5EPP A;  3QWZ A;  1TWA A;  4CS0 A;  2JIR A;  1SFO A;  2YU9 A;  1Y1V A;  5FTJ A;  2VPY A;  1OA7 A;  1TWC A;  2DMR A;  3X2G A;  5GM9 A;  4FFT A;  3CF2 A;  3GTK A;  2HCZ X;  4QIW A;  4DMR A;  2PI8 A;  3ML1 A;  1G8J A;  1PYQ A;  1SMY D;  2VPW A;  1TWH A;  2JA6 A;  3X2J A;  1SIW A;  1Y1W A;  3PLX B;  3QC8 A;  1HD5 A;  1H0H A;  2E2H A;  2C45 A;  2JIO A;  4AAY A;  1G8K A;  1QCS A;  4NOH A;  1DMR A;  2NAP A;  2PMZ A;  1PYU B;  1R27 A;  2WAQ A;  3ENG A;  1KQF A;  1FDO A;  3IR6 A;  1I3Q A;  4KLN A;  2NVY A;  4D7Z B;  1TMO A;  4RV0 A;  4JJO A;  5H4U A;  5C1B A;  1Q16 A;  3X2O A;  1CZ5 A;  1PT0 A;  3GTQ A;  2PJH B;  1PT1 A;  1WC2 A;  4KDI A;  3SUL A;  4C2M A;  3GTM A;  1TWF A;  2R93 A;  3X2M A;  2JIP A;  2GAE A;  3IR7 A;  2VPZ A;  4AON B;  4CRZ A;  1PQF A;  4AVR A;  4ENG A;  2BH0 A;  4ZM7 A;  1KQG A;  4GA6 A;  3GTO A;  1R7R A;  3X2H A;  2G5D A;  3H0G A;  1E32 A;  1TWG A;  2G6G A;  4KO8 A;  4GA5 A;  2AE0 X;  5GLX A;  1WLF A;  2NYA A;  1ZC1 A;  3DMR A;  4JP6 A;  2JA7 A;  4JS7 A;  5FTL A;  4JP7 A;  2IV2 X;  1PQH A;  2A69 D;  3X2I A;  2KQA A;  3QQ8 A;  1OA9 A;  3HU1 A;  3HU3 A;  1AW8 B;  3SUJ A;  3GTG A;  3GTL A;  2VPX A;  5FTK A;  1IW7 D;  2A6H D;  2JA5 A;  3FKI A;  2A68 D;  1E60 A;  1YNN D;  3GTP A;  2E2I A;  2A6E D;  3HKZ A;  1EU1 A;  1Y4Z A;  5FTN A;  5GLY A;  3D30 A;  3O5A A;  5B6C A;  2O5J D;  1DMS A;  2VUM A;  2B63 A;  4FER A;  1S3S A;  1CR5 A;  5T5I D;  4AOK B;  1CZ4 A;  2PIC A;  5T5M D;  1WCM A;  2YUJ A;  2JIQ A;  2NVX A;  3IR5 A;  1YNJ D;  5FTM A;  2V45 A;  5GLF A;  1PQE A;  2PJJ A;  4AZD A;  2Y0S A;  1K83 A;  2PNW A;  1N10 A;  4JCW A;  4CRY G;  4FG4 A;  3GTJ A; 
#chains in the Genus database with same CATH homology
 1OGY A;  1E61 A;  2E7Z A;  1PPY A;  3QQ7 A;  3OUG A;  3HU2 A;  1FDI A;  3CQZ A;  4AYB A;  1ZYR D;  2EEO B;  3TM7 B;  4KOD A;  1E18 A;  1UHD A;  1VC3 B;  2R92 A;  3TIW A;  1E5V A;  1QDN A;  5DYI A;  2V3V A;  2KI8 A;  1H5N A;  1Y5I A;  5C18 A;  1R9T A;  1I50 A;  2WB1 A;  2R7Z A;  5DYG A;  1UHE A;  1AA6 A;  3CZB A;  4KDL A;  2CW0 D;  2JIM A;  1YLE A;  2BE5 D;  5EPP A;  3QWZ A;  1TWA A;  4CS0 A;  2JIR A;  1SFO A;  2YU9 A;  1Y1V A;  5FTJ A;  2VPY A;  1TWC A;  2DMR A;  3GTK A;  3CF2 A;  4QIW A;  4DMR A;  2PI8 A;  3ML1 A;  1G8J A;  1PYQ A;  1SMY D;  2VPW A;  1TWH A;  2JA6 A;  1SIW A;  1Y1W A;  3PLX B;  3QC8 A;  1H0H A;  2E2H A;  2C45 A;  2JIO A;  4AAY A;  1G8K A;  1QCS A;  4NOH A;  1DMR A;  2NAP A;  2PMZ A;  1PYU B;  1R27 A;  2WAQ A;  1KQF A;  1FDO A;  3IR6 A;  1I3Q A;  4KLN A;  2NVY A;  4D7Z B;  1TMO A;  4RV0 A;  5C1B A;  1Q16 A;  1CZ5 A;  1PT0 A;  3GTQ A;  2PJH B;  1PT1 A;  4KDI A;  3GTM A;  4C2M A;  1TWF A;  2R93 A;  2JIP A;  2GAE A;  3IR7 A;  2VPZ A;  4AON B;  4CRZ A;  1PQF A;  1KQG A;  4GA6 A;  1R7R A;  2G5D A;  3H0G A;  1E32 A;  1TWG A;  2G6G A;  4KO8 A;  4GA5 A;  2AE0 X;  1WLF A;  2NYA A;  1ZC1 A;  3DMR A;  2JA7 A;  5FTL A;  2IV2 X;  1PQH A;  2A69 D;  3QQ8 A;  3HU1 A;  3HU3 A;  1AW8 B;  3GTG A;  3GTL A;  2VPX A;  5FTK A;  1IW7 D;  2A6H D;  2JA5 A;  3FKI A;  2A68 D;  1E60 A;  1YNN D;  3GTP A;  2E2I A;  2A6E D;  3HKZ A;  1EU1 A;  1Y4Z A;  5FTN A;  3O5A A;  5B6C A;  2O5J D;  1DMS A;  2VUM A;  2B63 A;  1S3S A;  1CR5 A;  5T5I D;  4AOK B;  1CZ4 A;  2PIC A;  5T5M D;  1WCM A;  2YUJ A;  2JIQ A;  2NVX A;  3IR5 A;  1YNJ D;  5FTM A;  2V45 A;  5GLF A;  1PQE A;  2PJJ A;  4AZD A;  2Y0S A;  1K83 A;  2PNW A;  4CRY G;  3GTO A;  3GTJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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