4CRZA

Direct visualisation of strain-induced protein prost-translational modification
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
127
structure length
126
Chain Sequence
SMIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSVYAIAAERGSRIISVNGAAAHASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTAKAIPVQVA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Structure of the Pand/Panz Protein Complex Reveals Negative Feedback Regulation of Pantothenate Biosynthesis by Coenzyme A.
pubmed doi rcsb
source organism Escherichia coli k-12
molecule tags Lyase
molecule keywords ASPARTATE 1-DECARBOXYLASE
total genus 35
structure length 126
sequence length 127
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2014-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 4crzA00
1TWAA 2VPZA 3GTKA 4D7ZB 2JA5A 3FKIA 1QDNA 3DMRA 2VPXA 3HU2A 2R92A 1IW7D 2KI8A 3GTMA 2VUMA 2Y0SA 1WCMA 4GA6A 1OGYA 1G8JA 1FDIA 2R7ZA 3QC8A 2E7ZA 2PJHB 3GTJA 1H0HA 1DMRA 4DMRA 1E60A 4KLNA 5EPPA 3H0GA 3QQ7A 1Q16A 1TWFA 2VPYA 5FTJA 2JA6A 4KODA 1I50A 2EEOB 1PYUB 1K83A 1Y1VA 2NAPA 1QCSA 4CRYG 3GTPA 5T5ID 3OUGA 1AW8B 1S3SA 1PPYA 2V3VA 1SIWA 1R27A 5FTLA 2NYAA 5FTNA 3O5AA 1PQHA 2YU9A 3QWZA 5C18A 1CZ5A 1VC3B 4CRZA 2DMRA 1CZ4A 1FDOA 4KDIA 2PMZA 5T5MD 2JIQA 1CR5A 1Y5IA 1TMOA 5FTMA 2JIMA 3HU3A 1E32A 5DYIA 1I3QA 1R7RA 2IV2X 3TM7B 3PLXB 1E5VA 2WAQA 2JIRA 2NVYA 1UHEA 2E2HA 5GLFA 1PQEA 3IR7A 1PT0A 1Y1WA 3ML1A 4QIWA 1TWGA 3IR6A 2E2IA 1UHDA 2R93A 4AZDA 4CS0A 4RV0A 4GA5A 1PYQA 4C2MA 1KQGA 1TWHA 1EU1A 5FTKA 1AA6A 2JA7A 1TWCA 4AAYA 3GTOA 1H5NA 2C45A 3QQ8A 2NVXA 2B63A 1DMSA 3GTQA 4KO8A 1WLFA 3GTLA 3HKZA 1KQFA 3CF2A 1G8KA 3CQZA 2JIOA 5DYGA 1YLEA 1Y4ZA 1E61A 1E18A 1PT1A 5B6CA 4AYBA 3TIWA 2WB1A 2V45A 1R9TA 3HU1A 3IR5A 1PQFA 2VPWA 4AOKB 2JIPA 3GTGA 4KDLA 5C1BA 1SFOA 4AONB
chains in the Genus database with same CATH superfamily
1TWAA 2VPZA 3GTKA 4D7ZB 2JA5A 1WC2A 3FKIA 1BW3A 1QDNA 3X2LA 3DMRA 2G6GA 2VPXA 2A68D 4FG4A 3HU2A 2R92A 1IW7D 2AE0X 2KI8A 3D30A 3GTMA 2PI8A 1YNND 3X2HA 2VUMA 1WCMA 2Y0SA 4GA6A 1OGYA 1G8JA 1FDIA 2R7ZA 3QC8A 2E7ZA 2PJHB 3GTJA 1H0HA 2G5DA 1N10A 1DMRA 5GM9A 2CW0D 4DMRA 4AVRA 1E60A 4KLNA 5EPPA 3H0GA 3QQ7A 1Q16A 2PJJA 1TWFA 2VPYA 3X2OA 5FTJA 1L8FA 4ENGA 2JA6A 4KODA 1I50A 2A69D 2EEOB 1PYUB 1K83A 1Y1VA 2HCZX 1QCSA 2NAPA 4CRYG 3GTPA 5T5ID 3OUGA 1AW8B 2A6ED 1S3SA 1PPYA 2V3VA 1SIWA 1R27A 5FTLA 2NYAA 5GLXA 5FTNA 3O5AA 1PQHA 3ENGA 2YU9A 3QWZA 5C18A 2PNWA 1ZYRD 4FG2A 1CZ5A 1VC3B 4CRZA 2DMRA 4ZM7A 3X2PA 3X2GA 1SMYD 1CZ4A 1FDOA 4JP7A 2PMZA 1OA9A 4KDIA 2JIQA 5T5MD 1CR5A 5H4UA 1Y5IA 1TMOA 4FERA 5FTMA 2JIMA 3HU3A 1E32A 5DYIA 1I3QA 1R7RA 2IV2X 4JJOA 3TM7B 4JS7A 3PLXB 1E5VA 3SUJA 2BH0A 2WAQA 2JIRA 1ZC1A 2NVYA 3SUKA 1UHEA 2E2HA 4JCWA 1PQEA 2A6HD 2YUJA 3IR7A 5GLFA 2ENGA 1PT0A 1Y1WA 3ML1A 4QIWA 1TWGA 3SUMA 3IR6A 2E2IA 1UHDA 2R93A 1HD5A 4AZDA 4CS0A 2KQAA 4JP6A 4RV0A 4GA5A 1PYQA 4C2MA 1KQGA 1TWHA 1EU1A 5FTKA 1AA6A 2JA7A 1TWCA 2GAEA 3X2NA 4AAYA 3X2JA 3GTOA 1H5NA 2C45A 3QQ8A 2NVXA 2B63A 1DMSA 3GTQA 4KO8A 1WLFA 4NOHA 3GTLA 1OA7A 3HKZA 1KQFA 3CF2A 4L48A 3M3GA 3X2KA 1G8KA 4FFTA 3CQZA 2JIOA 5DYGA 1YLEA 1Y4ZA 1E61A 1E18A 1PT1A 1YNJD 1BW4A 2BE5D 5B6CA 4AYBA 3TIWA 2WB1A 2PICA 2V45A 3X2IA 1R9TA 3HU1A 3IR5A 1PQFA 2VPWA 5GLYA 2JIPA 3SULA 4AOKB 3CZBA 4KDLA 3GTGA 5C1BA 2O5JD 1SFOA 3X2MA 4AONB
chains in the Genus database with same CATH topology
1TWAA 2VPZA 3GTKA 4D7ZB 2JA5A 3FKIA 1QDNA 3DMRA 2G6GA 2VPXA 2A68D 3HU2A 2R92A 1IW7D 2AE0X 2KI8A 3GTMA 2PI8A 1YNND 2VUMA 1WCMA 2Y0SA 4GA6A 1OGYA 1G8JA 1FDIA 2R7ZA 3QC8A 2E7ZA 2PJHB 3GTJA 1H0HA 2G5DA 1DMRA 2CW0D 4DMRA 1E60A 4KLNA 5EPPA 3H0GA 3QQ7A 1Q16A 2PJJA 1TWFA 2VPYA 5FTJA 2JA6A 4KODA 1I50A 2A69D 2EEOB 1PYUB 1K83A 1Y1VA 2NAPA 1QCSA 4CRYG 3GTPA 5T5ID 3OUGA 1AW8B 2A6ED 1S3SA 1PPYA 2V3VA 1SIWA 1R27A 5FTLA 2NYAA 5FTNA 3O5AA 1PQHA 2YU9A 3QWZA 5C18A 2PNWA 1ZYRD 1CZ5A 1VC3B 4CRZA 2DMRA 1SMYD 1CZ4A 1FDOA 4KDIA 2PMZA 5T5MD 2JIQA 1CR5A 1Y5IA 1TMOA 5FTMA 2JIMA 3HU3A 1E32A 5DYIA 1I3QA 1R7RA 2IV2X 3TM7B 3PLXB 1E5VA 2WAQA 2JIRA 1ZC1A 2NVYA 1UHEA 2E2HA 5GLFA 1PQEA 2A6HD 2YUJA 3IR7A 1PT0A 1Y1WA 3ML1A 4QIWA 1TWGA 3IR6A 2E2IA 1UHDA 2R93A 4AZDA 4CS0A 4RV0A 4GA5A 1PYQA 4C2MA 1KQGA 1TWHA 1EU1A 5FTKA 1AA6A 2JA7A 1TWCA 2GAEA 4AAYA 3GTOA 1H5NA 2C45A 3QQ8A 2NVXA 2B63A 1DMSA 3GTQA 4KO8A 1WLFA 4NOHA 3GTLA 3HKZA 1KQFA 3CF2A 1G8KA 3CQZA 2JIOA 5DYGA 1YLEA 1Y4ZA 1E61A 1E18A 1PT1A 1YNJD 2BE5D 5B6CA 4AYBA 3TIWA 2WB1A 2PICA 2V45A 1R9TA 3HU1A 3IR5A 1PQFA 2VPWA 4AOKB 2JIPA 3GTGA 3CZBA 4KDLA 5C1BA 2O5JD 1SFOA 4AONB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TWA A;  2VPZ A;  3GTK A;  4D7Z B;  2JA5 A;  3FKI A;  1QDN A;  3DMR A;  2VPX A;  3HU2 A;  2R92 A;  1IW7 D;  2KI8 A;  3GTM A;  2VUM A;  2Y0S A;  1WCM A;  4GA6 A;  1OGY A;  1G8J A;  1FDI A;  2R7Z A;  3QC8 A;  2E7Z A;  2PJH B;  3GTJ A;  1H0H A;  1DMR A;  4DMR A;  1E60 A;  4KLN A;  5EPP A;  3H0G A;  3QQ7 A;  1Q16 A;  1TWF A;  2VPY A;  5FTJ A;  2JA6 A;  4KOD A;  1I50 A;  2EEO B;  1PYU B;  1K83 A;  1Y1V A;  2NAP A;  1QCS A;  4CRY G;  3GTP A;  5T5I D;  3OUG A;  1AW8 B;  1S3S A;  1PPY A;  2V3V A;  1SIW A;  1R27 A;  5FTL A;  2NYA A;  5FTN A;  3O5A A;  1PQH A;  2YU9 A;  3QWZ A;  5C18 A;  1CZ5 A;  1VC3 B;  4CRZ A;  2DMR A;  1CZ4 A;  1FDO A;  4KDI A;  2PMZ A;  5T5M D;  2JIQ A;  1CR5 A;  1Y5I A;  1TMO A;  5FTM A;  2JIM A;  3HU3 A;  1E32 A;  5DYI A;  1I3Q A;  1R7R A;  2IV2 X;  3TM7 B;  3PLX B;  1E5V A;  2WAQ A;  2JIR A;  2NVY A;  1UHE A;  2E2H A;  5GLF A;  1PQE A;  3IR7 A;  1PT0 A;  1Y1W A;  3ML1 A;  4QIW A;  1TWG A;  3IR6 A;  2E2I A;  1UHD A;  2R93 A;  4AZD A;  4CS0 A;  4RV0 A;  4GA5 A;  1PYQ A;  4C2M A;  1KQG A;  1TWH A;  1EU1 A;  5FTK A;  1AA6 A;  2JA7 A;  1TWC A;  4AAY A;  3GTO A;  1H5N A;  2C45 A;  3QQ8 A;  2NVX A;  2B63 A;  1DMS A;  3GTQ A;  4KO8 A;  1WLF A;  3GTL A;  3HKZ A;  1KQF A;  3CF2 A;  1G8K A;  3CQZ A;  2JIO A;  5DYG A;  1YLE A;  1Y4Z A;  1E61 A;  1E18 A;  1PT1 A;  5B6C A;  4AYB A;  3TIW A;  2WB1 A;  2V45 A;  1R9T A;  3HU1 A;  3IR5 A;  1PQF A;  2VPW A;  4AOK B;  2JIP A;  3GTG A;  4KDL A;  5C1B A;  1SFO A;  4AON B; 
#chains in the Genus database with same CATH topology
 1TWA A;  2VPZ A;  3GTK A;  4D7Z B;  2JA5 A;  1WC2 A;  3FKI A;  1BW3 A;  1QDN A;  3X2L A;  3DMR A;  2G6G A;  2VPX A;  2A68 D;  4FG4 A;  3HU2 A;  2R92 A;  1IW7 D;  2AE0 X;  2KI8 A;  3D30 A;  3GTM A;  2PI8 A;  1YNN D;  3X2H A;  2VUM A;  1WCM A;  2Y0S A;  4GA6 A;  1OGY A;  1G8J A;  1FDI A;  2R7Z A;  3QC8 A;  2E7Z A;  2PJH B;  3GTJ A;  1H0H A;  2G5D A;  1N10 A;  1DMR A;  5GM9 A;  2CW0 D;  4DMR A;  4AVR A;  1E60 A;  4KLN A;  5EPP A;  3H0G A;  3QQ7 A;  1Q16 A;  2PJJ A;  1TWF A;  2VPY A;  3X2O A;  5FTJ A;  1L8F A;  4ENG A;  2JA6 A;  4KOD A;  1I50 A;  2A69 D;  2EEO B;  1PYU B;  1K83 A;  1Y1V A;  2HCZ X;  1QCS A;  2NAP A;  4CRY G;  3GTP A;  5T5I D;  3OUG A;  1AW8 B;  2A6E D;  1S3S A;  1PPY A;  2V3V A;  1SIW A;  1R27 A;  5FTL A;  2NYA A;  5GLX A;  5FTN A;  3O5A A;  1PQH A;  3ENG A;  2YU9 A;  3QWZ A;  5C18 A;  2PNW A;  1ZYR D;  4FG2 A;  1CZ5 A;  1VC3 B;  4CRZ A;  2DMR A;  4ZM7 A;  3X2P A;  3X2G A;  1SMY D;  1CZ4 A;  1FDO A;  4JP7 A;  2PMZ A;  1OA9 A;  4KDI A;  2JIQ A;  5T5M D;  1CR5 A;  5H4U A;  1Y5I A;  1TMO A;  4FER A;  5FTM A;  2JIM A;  3HU3 A;  1E32 A;  5DYI A;  1I3Q A;  1R7R A;  2IV2 X;  4JJO A;  3TM7 B;  4JS7 A;  3PLX B;  1E5V A;  3SUJ A;  2BH0 A;  2WAQ A;  2JIR A;  1ZC1 A;  2NVY A;  3SUK A;  1UHE A;  2E2H A;  4JCW A;  1PQE A;  2A6H D;  2YUJ A;  3IR7 A;  5GLF A;  2ENG A;  1PT0 A;  1Y1W A;  3ML1 A;  4QIW A;  1TWG A;  3SUM A;  3IR6 A;  2E2I A;  1UHD A;  2R93 A;  1HD5 A;  4AZD A;  4CS0 A;  2KQA A;  4JP6 A;  4RV0 A;  4GA5 A;  1PYQ A;  4C2M A;  1KQG A;  1TWH A;  1EU1 A;  5FTK A;  1AA6 A;  2JA7 A;  1TWC A;  2GAE A;  3X2N A;  4AAY A;  3X2J A;  3GTO A;  1H5N A;  2C45 A;  3QQ8 A;  2NVX A;  2B63 A;  1DMS A;  3GTQ A;  4KO8 A;  1WLF A;  4NOH A;  3GTL A;  1OA7 A;  3HKZ A;  1KQF A;  3CF2 A;  4L48 A;  3M3G A;  3X2K A;  1G8K A;  4FFT A;  3CQZ A;  2JIO A;  5DYG A;  1YLE A;  1Y4Z A;  1E61 A;  1E18 A;  1PT1 A;  1YNJ D;  1BW4 A;  2BE5 D;  5B6C A;  4AYB A;  3TIW A;  2WB1 A;  2PIC A;  2V45 A;  3X2I A;  1R9T A;  3HU1 A;  3IR5 A;  1PQF A;  2VPW A;  5GLY A;  2JIP A;  3SUL A;  4AOK B;  3CZB A;  4KDL A;  3GTG A;  5C1B A;  2O5J D;  1SFO A;  3X2M A;  4AON B; 
#chains in the Genus database with same CATH homology
 1TWA A;  2VPZ A;  3GTK A;  4D7Z B;  2JA5 A;  3FKI A;  1QDN A;  3DMR A;  2G6G A;  2VPX A;  2A68 D;  3HU2 A;  2R92 A;  1IW7 D;  2AE0 X;  2KI8 A;  3GTM A;  2PI8 A;  1YNN D;  2VUM A;  1WCM A;  2Y0S A;  4GA6 A;  1OGY A;  1G8J A;  1FDI A;  2R7Z A;  3QC8 A;  2E7Z A;  2PJH B;  3GTJ A;  1H0H A;  2G5D A;  1DMR A;  2CW0 D;  4DMR A;  1E60 A;  4KLN A;  5EPP A;  3H0G A;  3QQ7 A;  1Q16 A;  2PJJ A;  1TWF A;  2VPY A;  5FTJ A;  2JA6 A;  4KOD A;  1I50 A;  2A69 D;  2EEO B;  1PYU B;  1K83 A;  1Y1V A;  2NAP A;  1QCS A;  4CRY G;  3GTP A;  5T5I D;  3OUG A;  1AW8 B;  2A6E D;  1S3S A;  1PPY A;  2V3V A;  1SIW A;  1R27 A;  5FTL A;  2NYA A;  5FTN A;  3O5A A;  1PQH A;  2YU9 A;  3QWZ A;  5C18 A;  2PNW A;  1ZYR D;  1CZ5 A;  1VC3 B;  4CRZ A;  2DMR A;  1SMY D;  1CZ4 A;  1FDO A;  4KDI A;  2PMZ A;  5T5M D;  2JIQ A;  1CR5 A;  1Y5I A;  1TMO A;  5FTM A;  2JIM A;  3HU3 A;  1E32 A;  5DYI A;  1I3Q A;  1R7R A;  2IV2 X;  3TM7 B;  3PLX B;  1E5V A;  2WAQ A;  2JIR A;  1ZC1 A;  2NVY A;  1UHE A;  2E2H A;  5GLF A;  1PQE A;  2A6H D;  2YUJ A;  3IR7 A;  1PT0 A;  1Y1W A;  3ML1 A;  4QIW A;  1TWG A;  3IR6 A;  2E2I A;  1UHD A;  2R93 A;  4AZD A;  4CS0 A;  4RV0 A;  4GA5 A;  1PYQ A;  4C2M A;  1KQG A;  1TWH A;  1EU1 A;  5FTK A;  1AA6 A;  2JA7 A;  1TWC A;  2GAE A;  4AAY A;  3GTO A;  1H5N A;  2C45 A;  3QQ8 A;  2NVX A;  2B63 A;  1DMS A;  3GTQ A;  4KO8 A;  1WLF A;  4NOH A;  3GTL A;  3HKZ A;  1KQF A;  3CF2 A;  1G8K A;  3CQZ A;  2JIO A;  5DYG A;  1YLE A;  1Y4Z A;  1E61 A;  1E18 A;  1PT1 A;  1YNJ D;  2BE5 D;  5B6C A;  4AYB A;  3TIW A;  2WB1 A;  2PIC A;  2V45 A;  1R9T A;  3HU1 A;  3IR5 A;  1PQF A;  2VPW A;  4AOK B;  2JIP A;  3GTG A;  3CZB A;  4KDL A;  5C1B A;  2O5J D;  1SFO A;  4AON B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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