4CRZA

Direct visualisation of strain-induced protein prost-translational modification
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
127
structure length
126
Chain Sequence
b'SMIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSVYAIAAERGSRIISVNGAAAHASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTAKAIPVQVA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ASPARTATE 1-DECARBOXYLASE
publication title The Structure of the Pand/Panz Protein Complex Reveals Negative Feedback Regulation of Pantothenate Biosynthesis by Coenzyme A.
pubmed doi rcsb
source organism Escherichia coli k-12
molecule tags Lyase
total genus 35
structure length 126
sequence length 127
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2014-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 4crzA00
1OGYA 1K83A 2DMRA 1FDOA 2YU9A 3GTQA 1CR5A 2JIRA 1TWCA 4KDLA 5C18A 5DYGA 1TMOA 1R27A 1I50A 2E2IA 1PPYA 1E5VA 1CZ5A 1KQGA 1UHDA 2KI8A 1PQFA 1FDIA 4RV0A 1H0HA 5FTMA 4QIWA 2C45A 1EU1A 1G8KA 5T5MD 1PQEA 2WAQA 1PT1A 1PYQA 3H0GA 2NAPA 5FTKA 5FTLA 1CZ4A 5C1BA 1AA6A 3GTMA 5FTNA 2VUMA 3GTOA 4CS0A 3QQ7A 5T5ID 3GTGA 2Y0SA 2R7ZA 4GA6A 1Y1VA 1SFOA 1H5NA 1E61A 4KO8A 5GLFA 4AONB 3HU2A 2V3VA 2V45A 2VPXA 3O5AA 2PMZA 1E32A 1Y4ZA 1SIWA 3GTKA 1S3SA 4AZDA 1I3QA 2R93A 1E18A 2NVYA 2JIOA 1TWFA 2JIQA 1UHEA 2NYAA 1TWHA 1Y5IA 2B63A 4KLNA 1Y1WA 3QQ8A 1AW8B 4C2MA 3GTPA 1PT0A 4GA5A 2NVXA 5FTJA 4AOKB 5EPPA 5B6CA 1R7RA 1KQFA 5DYIA 3QWZA 4DMRA 3CQZA 3CF2A 2VPZA 3HKZA 1PQHA 1QCSA 3IR6A 4AAYA 2JA6A 1TWAA 2EEOB 3OUGA 3TIWA 3FKIA 1DMSA 1TWGA 3IR7A 3TM7B 2PJHB 4D7ZB 1VC3B 2E7ZA 3HU3A 1PYUB 4CRYG 4AYBA 4KODA 4KDIA 2JIMA 3GTLA 2VPYA 1Q16A 1R9TA 2JA7A 1E60A 2IV2X 2WB1A 1YLEA 1DMRA 1IW7D 3IR5A 4CRZA 3HU1A 2R92A 3QC8A 2E2HA 1WLFA 2JIPA 2VPWA 3ML1A 1WCMA 2JA5A 3DMRA 1G8JA 3GTJA 3PLXB 1QDNA
chains in the Genus database with same CATH superfamily
1OGYA 1K83A 2A6HD 2DMRA 1FDOA 4FERA 2YU9A 3GTQA 2O5JD 1CR5A 4JP6A 2JIRA 1OA9A 1TWCA 4KDLA 5C18A 3D30A 5DYGA 1TMOA 1R27A 1I50A 5GLYA 2E2IA 1PPYA 1E5VA 1CZ5A 1SMYD 3CZBA 1KQGA 1UHDA 1OA7A 2KI8A 3X2KA 1PQFA 1BW4A 1FDIA 1BW3A 4RV0A 1H0HA 5FTMA 2A68D 2C45A 4QIWA 1EU1A 1G8KA 5T5MD 3X2OA 1PQEA 2PNWA 2WAQA 1PT1A 1PYQA 4FFTA 3X2JA 3H0GA 2NAPA 5FTKA 3X2GA 4L48A 5FTLA 3X2NA 1CZ4A 5C1BA 1AA6A 3GTMA 5FTNA 2VUMA 3GTOA 4CS0A 3QQ7A 5T5ID 3GTGA 2Y0SA 2R7ZA 4GA6A 1Y1VA 1SFOA 1H5NA 1E61A 4KO8A 5GLFA 4AONB 2G5DA 3HU2A 2V3VA 3X2LA 2V45A 2VPXA 3O5AA 2PMZA 2AE0X 1E32A 1Y4ZA 1SIWA 3SUMA 2ENGA 3GTKA 1HD5A 1S3SA 4JS7A 4AZDA 1I3QA 5GM9A 2R93A 5GLXA 1E18A 2NVYA 2KQAA 4ENGA 2JIOA 1TWFA 2JIQA 3SULA 1UHEA 2NYAA 2PJJA 4JCWA 1WC2A 1TWHA 1Y5IA 2B63A 4KLNA 2PI8A 1Y1WA 3QQ8A 1AW8B 3ENGA 4FG4A 4C2MA 3SUJA 3GTPA 1PT0A 4GA5A 2NVXA 5FTJA 4AOKB 3X2MA 5EPPA 5B6CA 4ZM7A 1R7RA 1ZC1A 2BH0A 1KQFA 4AVRA 5H4UA 2CW0D 3SUKA 5DYIA 3QWZA 2YUJA 4DMRA 3CQZA 3CF2A 2VPZA 3HKZA 1PQHA 1QCSA 3IR6A 1L8FA 4AAYA 2JA6A 1TWAA 2EEOB 3OUGA 4JJOA 2PICA 3FKIA 2GAEA 1DMSA 1TWGA 3IR7A 4FG2A 3TIWA 4NOHA 2HCZX 2G6GA 3X2HA 3TM7B 2PJHB 4D7ZB 1VC3B 2E7ZA 3HU3A 1PYUB 4CRYG 4AYBA 4KODA 4KDIA 2JIMA 3GTLA 2VPYA 1Q16A 4JP7A 2A6ED 3X2IA 3X2PA 1R9TA 2JA7A 1E60A 2IV2X 2WB1A 1YLEA 1DMRA 1IW7D 1YNND 2A69D 3HU1A 3IR5A 4CRZA 2R92A 2BE5D 3QC8A 2E2HA 1WLFA 1ZYRD 2JIPA 2VPWA 3ML1A 1YNJD 1WCMA 1N10A 2JA5A 3DMRA 1G8JA 3GTJA 3PLXB 1QDNA 3M3GA
chains in the Genus database with same CATH topology
1OGYA 1K83A 2A6HD 2DMRA 1FDOA 2YU9A 3GTQA 2O5JD 1CR5A 2JIRA 1TWCA 4KDLA 5C18A 5DYGA 1TMOA 1R27A 1I50A 2E2IA 1PPYA 1E5VA 1CZ5A 1SMYD 3CZBA 1KQGA 1UHDA 2KI8A 1PQFA 1FDIA 4RV0A 1H0HA 5FTMA 2A68D 2C45A 4QIWA 1EU1A 1G8KA 5T5MD 1PQEA 2PNWA 2WAQA 1PT1A 1PYQA 3H0GA 2NAPA 5FTKA 5FTLA 1CZ4A 5C1BA 1AA6A 3GTMA 5FTNA 2VUMA 3GTOA 4CS0A 3QQ7A 5T5ID 3GTGA 2Y0SA 2R7ZA 4GA6A 1Y1VA 1SFOA 1H5NA 1E61A 4KO8A 5GLFA 4AONB 2G5DA 3HU2A 2V3VA 2V45A 2VPXA 3O5AA 2PMZA 2AE0X 1E32A 1Y4ZA 1SIWA 3GTKA 1S3SA 4AZDA 1I3QA 2R93A 1E18A 2NVYA 2JIOA 1TWFA 2JIQA 1UHEA 2NYAA 2PJJA 1TWHA 1Y5IA 2B63A 4KLNA 2PI8A 1Y1WA 3QQ8A 1AW8B 4C2MA 3GTPA 1PT0A 4GA5A 2NVXA 5FTJA 4AOKB 5EPPA 5B6CA 1R7RA 1ZC1A 1KQFA 2CW0D 5DYIA 3QWZA 2YUJA 4DMRA 3CQZA 3CF2A 2VPZA 3HKZA 1PQHA 1QCSA 3IR6A 4AAYA 2JA6A 1TWAA 2EEOB 3OUGA 2PICA 3FKIA 2GAEA 1DMSA 1TWGA 3IR7A 3TIWA 4NOHA 2G6GA 3TM7B 2PJHB 4D7ZB 1VC3B 2E7ZA 3HU3A 1PYUB 4CRYG 4AYBA 4KODA 4KDIA 2JIMA 3GTLA 2VPYA 1Q16A 2A6ED 1R9TA 2JA7A 1E60A 2IV2X 2WB1A 1YLEA 1DMRA 1IW7D 1YNND 2A69D 3HU1A 3IR5A 4CRZA 2R92A 2BE5D 3QC8A 2E2HA 1WLFA 1ZYRD 2JIPA 2VPWA 3ML1A 1YNJD 1WCMA 2JA5A 3DMRA 1G8JA 3GTJA 3PLXB 1QDNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OGY A;  1K83 A;  2DMR A;  1FDO A;  2YU9 A;  3GTQ A;  1CR5 A;  2JIR A;  1TWC A;  4KDL A;  5C18 A;  5DYG A;  1TMO A;  1R27 A;  1I50 A;  2E2I A;  1PPY A;  1E5V A;  1CZ5 A;  1KQG A;  1UHD A;  2KI8 A;  1PQF A;  1FDI A;  4RV0 A;  1H0H A;  5FTM A;  4QIW A;  2C45 A;  1EU1 A;  1G8K A;  5T5M D;  1PQE A;  2WAQ A;  1PT1 A;  1PYQ A;  3H0G A;  2NAP A;  5FTK A;  5FTL A;  1CZ4 A;  5C1B A;  1AA6 A;  3GTM A;  5FTN A;  2VUM A;  3GTO A;  4CS0 A;  3QQ7 A;  5T5I D;  3GTG A;  2Y0S A;  2R7Z A;  4GA6 A;  1Y1V A;  1SFO A;  1H5N A;  1E61 A;  4KO8 A;  5GLF A;  4AON B;  3HU2 A;  2V3V A;  2V45 A;  2VPX A;  3O5A A;  2PMZ A;  1E32 A;  1Y4Z A;  1SIW A;  3GTK A;  1S3S A;  4AZD A;  1I3Q A;  2R93 A;  1E18 A;  2NVY A;  2JIO A;  1TWF A;  2JIQ A;  1UHE A;  2NYA A;  1TWH A;  1Y5I A;  2B63 A;  4KLN A;  1Y1W A;  3QQ8 A;  1AW8 B;  4C2M A;  3GTP A;  1PT0 A;  4GA5 A;  2NVX A;  5FTJ A;  4AOK B;  5EPP A;  5B6C A;  1R7R A;  1KQF A;  5DYI A;  3QWZ A;  4DMR A;  3CQZ A;  3CF2 A;  2VPZ A;  3HKZ A;  1PQH A;  1QCS A;  3IR6 A;  4AAY A;  2JA6 A;  1TWA A;  2EEO B;  3OUG A;  3TIW A;  3FKI A;  1DMS A;  1TWG A;  3IR7 A;  3TM7 B;  2PJH B;  4D7Z B;  1VC3 B;  2E7Z A;  3HU3 A;  1PYU B;  4CRY G;  4AYB A;  4KOD A;  4KDI A;  2JIM A;  3GTL A;  2VPY A;  1Q16 A;  1R9T A;  2JA7 A;  1E60 A;  2IV2 X;  2WB1 A;  1YLE A;  1DMR A;  1IW7 D;  3IR5 A;  4CRZ A;  3HU1 A;  2R92 A;  3QC8 A;  2E2H A;  1WLF A;  2JIP A;  2VPW A;  3ML1 A;  1WCM A;  2JA5 A;  3DMR A;  1G8J A;  3GTJ A;  3PLX B;  1QDN A; 
#chains in the Genus database with same CATH topology
 1OGY A;  1K83 A;  2A6H D;  2DMR A;  1FDO A;  4FER A;  2YU9 A;  3GTQ A;  2O5J D;  1CR5 A;  4JP6 A;  2JIR A;  1OA9 A;  1TWC A;  4KDL A;  5C18 A;  3D30 A;  5DYG A;  1TMO A;  1R27 A;  1I50 A;  5GLY A;  2E2I A;  1PPY A;  1E5V A;  1CZ5 A;  1SMY D;  3CZB A;  1KQG A;  1UHD A;  1OA7 A;  2KI8 A;  3X2K A;  1PQF A;  1BW4 A;  1FDI A;  1BW3 A;  4RV0 A;  1H0H A;  5FTM A;  2A68 D;  2C45 A;  4QIW A;  1EU1 A;  1G8K A;  5T5M D;  3X2O A;  1PQE A;  2PNW A;  2WAQ A;  1PT1 A;  1PYQ A;  4FFT A;  3X2J A;  3H0G A;  2NAP A;  5FTK A;  3X2G A;  4L48 A;  5FTL A;  3X2N A;  1CZ4 A;  5C1B A;  1AA6 A;  3GTM A;  5FTN A;  2VUM A;  3GTO A;  4CS0 A;  3QQ7 A;  5T5I D;  3GTG A;  2Y0S A;  2R7Z A;  4GA6 A;  1Y1V A;  1SFO A;  1H5N A;  1E61 A;  4KO8 A;  5GLF A;  4AON B;  2G5D A;  3HU2 A;  2V3V A;  3X2L A;  2V45 A;  2VPX A;  3O5A A;  2PMZ A;  2AE0 X;  1E32 A;  1Y4Z A;  1SIW A;  3SUM A;  2ENG A;  3GTK A;  1HD5 A;  1S3S A;  4JS7 A;  4AZD A;  1I3Q A;  5GM9 A;  2R93 A;  5GLX A;  1E18 A;  2NVY A;  2KQA A;  4ENG A;  2JIO A;  1TWF A;  2JIQ A;  3SUL A;  1UHE A;  2NYA A;  2PJJ A;  4JCW A;  1WC2 A;  1TWH A;  1Y5I A;  2B63 A;  4KLN A;  2PI8 A;  1Y1W A;  3QQ8 A;  1AW8 B;  3ENG A;  4FG4 A;  4C2M A;  3SUJ A;  3GTP A;  1PT0 A;  4GA5 A;  2NVX A;  5FTJ A;  4AOK B;  3X2M A;  5EPP A;  5B6C A;  4ZM7 A;  1R7R A;  1ZC1 A;  2BH0 A;  1KQF A;  4AVR A;  5H4U A;  2CW0 D;  3SUK A;  5DYI A;  3QWZ A;  2YUJ A;  4DMR A;  3CQZ A;  3CF2 A;  2VPZ A;  3HKZ A;  1PQH A;  1QCS A;  3IR6 A;  1L8F A;  4AAY A;  2JA6 A;  1TWA A;  2EEO B;  3OUG A;  4JJO A;  2PIC A;  3FKI A;  2GAE A;  1DMS A;  1TWG A;  3IR7 A;  4FG2 A;  3TIW A;  4NOH A;  2HCZ X;  2G6G A;  3X2H A;  3TM7 B;  2PJH B;  4D7Z B;  1VC3 B;  2E7Z A;  3HU3 A;  1PYU B;  4CRY G;  4AYB A;  4KOD A;  4KDI A;  2JIM A;  3GTL A;  2VPY A;  1Q16 A;  4JP7 A;  2A6E D;  3X2I A;  3X2P A;  1R9T A;  2JA7 A;  1E60 A;  2IV2 X;  2WB1 A;  1YLE A;  1DMR A;  1IW7 D;  1YNN D;  2A69 D;  3HU1 A;  3IR5 A;  4CRZ A;  2R92 A;  2BE5 D;  3QC8 A;  2E2H A;  1WLF A;  1ZYR D;  2JIP A;  2VPW A;  3ML1 A;  1YNJ D;  1WCM A;  1N10 A;  2JA5 A;  3DMR A;  1G8J A;  3GTJ A;  3PLX B;  1QDN A;  3M3G A; 
#chains in the Genus database with same CATH homology
 1OGY A;  1K83 A;  2A6H D;  2DMR A;  1FDO A;  2YU9 A;  3GTQ A;  2O5J D;  1CR5 A;  2JIR A;  1TWC A;  4KDL A;  5C18 A;  5DYG A;  1TMO A;  1R27 A;  1I50 A;  2E2I A;  1PPY A;  1E5V A;  1CZ5 A;  1SMY D;  3CZB A;  1KQG A;  1UHD A;  2KI8 A;  1PQF A;  1FDI A;  4RV0 A;  1H0H A;  5FTM A;  2A68 D;  2C45 A;  4QIW A;  1EU1 A;  1G8K A;  5T5M D;  1PQE A;  2PNW A;  2WAQ A;  1PT1 A;  1PYQ A;  3H0G A;  2NAP A;  5FTK A;  5FTL A;  1CZ4 A;  5C1B A;  1AA6 A;  3GTM A;  5FTN A;  2VUM A;  3GTO A;  4CS0 A;  3QQ7 A;  5T5I D;  3GTG A;  2Y0S A;  2R7Z A;  4GA6 A;  1Y1V A;  1SFO A;  1H5N A;  1E61 A;  4KO8 A;  5GLF A;  4AON B;  2G5D A;  3HU2 A;  2V3V A;  2V45 A;  2VPX A;  3O5A A;  2PMZ A;  2AE0 X;  1E32 A;  1Y4Z A;  1SIW A;  3GTK A;  1S3S A;  4AZD A;  1I3Q A;  2R93 A;  1E18 A;  2NVY A;  2JIO A;  1TWF A;  2JIQ A;  1UHE A;  2NYA A;  2PJJ A;  1TWH A;  1Y5I A;  2B63 A;  4KLN A;  2PI8 A;  1Y1W A;  3QQ8 A;  1AW8 B;  4C2M A;  3GTP A;  1PT0 A;  4GA5 A;  2NVX A;  5FTJ A;  4AOK B;  5EPP A;  5B6C A;  1R7R A;  1ZC1 A;  1KQF A;  2CW0 D;  5DYI A;  3QWZ A;  2YUJ A;  4DMR A;  3CQZ A;  3CF2 A;  2VPZ A;  3HKZ A;  1PQH A;  1QCS A;  3IR6 A;  4AAY A;  2JA6 A;  1TWA A;  2EEO B;  3OUG A;  2PIC A;  3FKI A;  2GAE A;  1DMS A;  1TWG A;  3IR7 A;  3TIW A;  4NOH A;  2G6G A;  3TM7 B;  2PJH B;  4D7Z B;  1VC3 B;  2E7Z A;  3HU3 A;  1PYU B;  4CRY G;  4AYB A;  4KOD A;  4KDI A;  2JIM A;  3GTL A;  2VPY A;  1Q16 A;  2A6E D;  1R9T A;  2JA7 A;  1E60 A;  2IV2 X;  2WB1 A;  1YLE A;  1DMR A;  1IW7 D;  1YNN D;  2A69 D;  3HU1 A;  3IR5 A;  4CRZ A;  2R92 A;  2BE5 D;  3QC8 A;  2E2H A;  1WLF A;  1ZYR D;  2JIP A;  2VPW A;  3ML1 A;  1YNJ D;  1WCM A;  2JA5 A;  3DMR A;  1G8J A;  3GTJ A;  3PLX B;  1QDN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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