4CRZA

Direct visualisation of strain-induced protein prost-translational modification
Total Genus 35
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
127
structure length
126
Chain Sequence
SMIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSVYAIAAERGSRIISVNGAAAHASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTAKAIPVQVA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Lyase
molecule keywords ASPARTATE 1-DECARBOXYLASE
publication title The Structure of the Pand/Panz Protein Complex Reveals Negative Feedback Regulation of Pantothenate Biosynthesis by Coenzyme A.
pubmed doi rcsb
source organism Escherichia coli k-12
total genus 35
structure length 126
sequence length 127
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2014-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 4crzA00
1CR5A 1G8JA 4KO8A 3TM7B 1K83A 1CZ5A 1QCSA 3HU1A 4AYBA 2R7ZA 1UHEA 1E5VA 1WLFA 2WB1A 2PJHB 2C45A 2VPWA 3IR6A 1H0HA 3GTLA 3GTOA 2JA6A 5C1BA 1R9TA 4GA5A 3GTGA 1PT1A 3OUGA 1EU1A 3HKZA 2JA5A 2DMRA 2B63A 1Y1VA 1PT0A 1Q16A 3HU2A 1KQFA 1UHDA 3FKIA 5FTLA 2JIRA 3DMRA 5FTJA 1AA6A 1E60A 4GA6A 3QWZA 4AAYA 4CRYG 2VPYA 3GTQA 1H5NA 3HU3A 4C2MA 3GTMA 1PQEA 2Y0SA 1WCMA 1FDIA 2VPXA 1I3QA 1TMOA 4KODA 3IR7A 5DYGA 1PYUB 2VPZA 4DMRA 1I50A 2YU9A 1DMRA 1Y4ZA 1TWCA 5GLFA 2JIPA 1PQFA 1G8KA 1E18A 1S3SA 4AONB 2V45A 1IW7D 1Y1WA 1TWFA 5DYIA 3CF2A 5FTKA 3GTKA 2EEOB 3GTPA 3QQ8A 4KLNA 1PQHA 5FTMA 2KI8A 4KDIA 5T5ID 2NVYA 2JIOA 1OGYA 3O5AA 2R92A 1YLEA 4RV0A 3CQZA 4D7ZB 4QIWA 2NYAA 2JIMA 5EPPA 3QQ7A 2WAQA 3GTJA 1TWAA 1QDNA 3PLXB 2JA7A 4KDLA 1SFOA 5C18A 1AW8B 1E32A 1VC3B 1TWGA 1SIWA 2PMZA 1PYQA 1R7RA 3ML1A 3H0GA 4AZDA 2E2HA 5B6CA 1FDOA 4AOKB 2IV2X 2NVXA 4CRZA 1DMSA 5FTNA 2JIQA 2E2IA 2V3VA 1Y5IA 1R27A 5T5MD 2R93A 3QC8A 2NAPA 3TIWA 1TWHA 1E61A 1CZ4A 1PPYA 1KQGA 3IR5A 4CS0A 2VUMA 2E7ZA
chains in the Genus database with same CATH superfamily
1CR5A 1G8JA 4KO8A 4JP6A 3SUMA 3TM7B 3X2OA 2A6ED 1K83A 1CZ5A 1QCSA 3ENGA 3HU1A 4AYBA 4FG4A 2R7ZA 1UHEA 1E5VA 1WLFA 2WB1A 2GAEA 2PJHB 2C45A 2VPWA 3SUKA 3IR6A 1H0HA 3GTLA 2AE0X 1ZC1A 2A68D 3GTOA 3X2PA 2JA6A 5C1BA 1R9TA 4GA5A 2YUJA 3GTGA 1PT1A 3OUGA 1EU1A 2PNWA 3HKZA 2JA5A 1L8FA 2DMRA 3SUJA 2B63A 4FFTA 2PI8A 1Y1VA 1PT0A 1Q16A 3HU2A 1KQFA 1UHDA 3FKIA 4ZM7A 5FTLA 2JIRA 5H4UA 4NOHA 3DMRA 5FTJA 5GM9A 1AA6A 1E60A 2A6HD 4GA6A 3QWZA 4AAYA 4CRYG 2VPYA 3GTQA 1H5NA 3HU3A 4C2MA 3GTMA 1PQEA 2Y0SA 1WCMA 1SMYD 1ZYRD 1FDIA 2G5DA 2VPXA 1I3QA 1TMOA 4KODA 5GLYA 2G6GA 3IR7A 2KQAA 1PYUB 2VPZA 5DYGA 4ENGA 4DMRA 1I50A 2YU9A 1DMRA 1Y4ZA 1TWCA 2A69D 2CW0D 3D30A 5GLFA 2JIPA 1YNND 1PQFA 1G8KA 1E18A 4JJOA 1S3SA 4AONB 2V45A 1IW7D 3CZBA 1Y1WA 1TWFA 5DYIA 1OA9A 3CF2A 5FTKA 3GTKA 2EEOB 3GTPA 4JS7A 3QQ8A 4KLNA 1PQHA 5FTMA 2KI8A 3X2HA 2PJJA 4JCWA 4KDIA 3X2LA 5T5ID 2NVYA 2JIOA 1OGYA 3O5AA 2R92A 3X2IA 1YLEA 4RV0A 3CQZA 4D7ZB 4QIWA 2NYAA 2JIMA 5EPPA 3QQ7A 1OA7A 1YNJD 2WAQA 3GTJA 2PICA 1TWAA 2HCZX 4JP7A 1QDNA 4AVRA 3PLXB 2JA7A 4KDLA 3X2MA 2BH0A 1SFOA 1BW4A 5C18A 1AW8B 1E32A 1VC3B 1TWGA 1SIWA 2O5JD 2ENGA 5GLXA 3X2KA 2PMZA 1PYQA 1R7RA 3ML1A 3H0GA 4AZDA 2E2HA 1BW3A 5B6CA 1FDOA 1N10A 3X2NA 4AOKB 2IV2X 2NVXA 4CRZA 1DMSA 5FTNA 1WC2A 2JIQA 3X2GA 2E2IA 2V3VA 1Y5IA 1R27A 4L48A 5T5MD 3QC8A 2NAPA 3X2JA 2R93A 1HD5A 3TIWA 4FERA 1TWHA 3SULA 3M3GA 4FG2A 1E61A 1CZ4A 1PPYA 1KQGA 2BE5D 3IR5A 4CS0A 2VUMA 2E7ZA
chains in the Genus database with same CATH topology
1CR5A 1G8JA 4KO8A 3TM7B 2A6ED 1K83A 1CZ5A 1QCSA 3HU1A 4AYBA 2R7ZA 1UHEA 1E5VA 1WLFA 2WB1A 2GAEA 2PJHB 2C45A 2VPWA 3IR6A 1H0HA 3GTLA 2AE0X 1ZC1A 2A68D 3GTOA 2JA6A 5C1BA 1R9TA 4GA5A 2YUJA 3GTGA 1PT1A 3OUGA 1EU1A 2PNWA 3HKZA 2JA5A 2DMRA 2B63A 2PI8A 1Y1VA 1PT0A 1Q16A 3HU2A 1KQFA 1UHDA 3FKIA 5FTLA 2JIRA 4NOHA 3DMRA 5FTJA 1AA6A 1E60A 2A6HD 4GA6A 3QWZA 4AAYA 4CRYG 2VPYA 3GTQA 1H5NA 3HU3A 4C2MA 3GTMA 1PQEA 2Y0SA 1WCMA 1SMYD 1ZYRD 1FDIA 2G5DA 2VPXA 1I3QA 1TMOA 4KODA 2G6GA 3IR7A 5DYGA 1PYUB 2VPZA 4DMRA 1I50A 2YU9A 1DMRA 1Y4ZA 1TWCA 2A69D 2CW0D 5GLFA 2JIPA 1YNND 1PQFA 1G8KA 1E18A 1S3SA 4AONB 2V45A 1IW7D 3CZBA 1Y1WA 1TWFA 5DYIA 3CF2A 5FTKA 3GTKA 2EEOB 3GTPA 3QQ8A 4KLNA 1PQHA 5FTMA 2KI8A 2PJJA 4KDIA 5T5ID 2NVYA 2JIOA 1OGYA 3O5AA 2R92A 1YLEA 4RV0A 3CQZA 4D7ZB 4QIWA 2NYAA 2JIMA 5EPPA 3QQ7A 1YNJD 2WAQA 3GTJA 2PICA 1TWAA 1QDNA 3PLXB 2JA7A 4KDLA 1SFOA 5C18A 1AW8B 1E32A 1VC3B 1TWGA 1SIWA 2O5JD 2PMZA 1PYQA 1R7RA 3ML1A 3H0GA 4AZDA 2E2HA 5B6CA 1FDOA 4AOKB 2IV2X 2NVXA 4CRZA 1DMSA 5FTNA 2JIQA 2E2IA 2V3VA 1Y5IA 1R27A 5T5MD 2R93A 3QC8A 2NAPA 3TIWA 1TWHA 1E61A 1CZ4A 1PPYA 1KQGA 2BE5D 3IR5A 4CS0A 2VUMA 2E7ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CR5 A;  1G8J A;  4KO8 A;  3TM7 B;  1K83 A;  1CZ5 A;  1QCS A;  3HU1 A;  4AYB A;  2R7Z A;  1UHE A;  1E5V A;  1WLF A;  2WB1 A;  2PJH B;  2C45 A;  2VPW A;  3IR6 A;  1H0H A;  3GTL A;  3GTO A;  2JA6 A;  5C1B A;  1R9T A;  4GA5 A;  3GTG A;  1PT1 A;  3OUG A;  1EU1 A;  3HKZ A;  2JA5 A;  2DMR A;  2B63 A;  1Y1V A;  1PT0 A;  1Q16 A;  3HU2 A;  1KQF A;  1UHD A;  3FKI A;  5FTL A;  2JIR A;  3DMR A;  5FTJ A;  1AA6 A;  1E60 A;  4GA6 A;  3QWZ A;  4AAY A;  4CRY G;  2VPY A;  3GTQ A;  1H5N A;  3HU3 A;  4C2M A;  3GTM A;  1PQE A;  2Y0S A;  1WCM A;  1FDI A;  2VPX A;  1I3Q A;  1TMO A;  4KOD A;  3IR7 A;  5DYG A;  1PYU B;  2VPZ A;  4DMR A;  1I50 A;  2YU9 A;  1DMR A;  1Y4Z A;  1TWC A;  5GLF A;  2JIP A;  1PQF A;  1G8K A;  1E18 A;  1S3S A;  4AON B;  2V45 A;  1IW7 D;  1Y1W A;  1TWF A;  5DYI A;  3CF2 A;  5FTK A;  3GTK A;  2EEO B;  3GTP A;  3QQ8 A;  4KLN A;  1PQH A;  5FTM A;  2KI8 A;  4KDI A;  5T5I D;  2NVY A;  2JIO A;  1OGY A;  3O5A A;  2R92 A;  1YLE A;  4RV0 A;  3CQZ A;  4D7Z B;  4QIW A;  2NYA A;  2JIM A;  5EPP A;  3QQ7 A;  2WAQ A;  3GTJ A;  1TWA A;  1QDN A;  3PLX B;  2JA7 A;  4KDL A;  1SFO A;  5C18 A;  1AW8 B;  1E32 A;  1VC3 B;  1TWG A;  1SIW A;  2PMZ A;  1PYQ A;  1R7R A;  3ML1 A;  3H0G A;  4AZD A;  2E2H A;  5B6C A;  1FDO A;  4AOK B;  2IV2 X;  2NVX A;  4CRZ A;  1DMS A;  5FTN A;  2JIQ A;  2E2I A;  2V3V A;  1Y5I A;  1R27 A;  5T5M D;  2R93 A;  3QC8 A;  2NAP A;  3TIW A;  1TWH A;  1E61 A;  1CZ4 A;  1PPY A;  1KQG A;  3IR5 A;  4CS0 A;  2VUM A;  2E7Z A; 
#chains in the Genus database with same CATH topology
 1CR5 A;  1G8J A;  4KO8 A;  4JP6 A;  3SUM A;  3TM7 B;  3X2O A;  2A6E D;  1K83 A;  1CZ5 A;  1QCS A;  3ENG A;  3HU1 A;  4AYB A;  4FG4 A;  2R7Z A;  1UHE A;  1E5V A;  1WLF A;  2WB1 A;  2GAE A;  2PJH B;  2C45 A;  2VPW A;  3SUK A;  3IR6 A;  1H0H A;  3GTL A;  2AE0 X;  1ZC1 A;  2A68 D;  3GTO A;  3X2P A;  2JA6 A;  5C1B A;  1R9T A;  4GA5 A;  2YUJ A;  3GTG A;  1PT1 A;  3OUG A;  1EU1 A;  2PNW A;  3HKZ A;  2JA5 A;  1L8F A;  2DMR A;  3SUJ A;  2B63 A;  4FFT A;  2PI8 A;  1Y1V A;  1PT0 A;  1Q16 A;  3HU2 A;  1KQF A;  1UHD A;  3FKI A;  4ZM7 A;  5FTL A;  2JIR A;  5H4U A;  4NOH A;  3DMR A;  5FTJ A;  5GM9 A;  1AA6 A;  1E60 A;  2A6H D;  4GA6 A;  3QWZ A;  4AAY A;  4CRY G;  2VPY A;  3GTQ A;  1H5N A;  3HU3 A;  4C2M A;  3GTM A;  1PQE A;  2Y0S A;  1WCM A;  1SMY D;  1ZYR D;  1FDI A;  2G5D A;  2VPX A;  1I3Q A;  1TMO A;  4KOD A;  5GLY A;  2G6G A;  3IR7 A;  2KQA A;  1PYU B;  2VPZ A;  5DYG A;  4ENG A;  4DMR A;  1I50 A;  2YU9 A;  1DMR A;  1Y4Z A;  1TWC A;  2A69 D;  2CW0 D;  3D30 A;  5GLF A;  2JIP A;  1YNN D;  1PQF A;  1G8K A;  1E18 A;  4JJO A;  1S3S A;  4AON B;  2V45 A;  1IW7 D;  3CZB A;  1Y1W A;  1TWF A;  5DYI A;  1OA9 A;  3CF2 A;  5FTK A;  3GTK A;  2EEO B;  3GTP A;  4JS7 A;  3QQ8 A;  4KLN A;  1PQH A;  5FTM A;  2KI8 A;  3X2H A;  2PJJ A;  4JCW A;  4KDI A;  3X2L A;  5T5I D;  2NVY A;  2JIO A;  1OGY A;  3O5A A;  2R92 A;  3X2I A;  1YLE A;  4RV0 A;  3CQZ A;  4D7Z B;  4QIW A;  2NYA A;  2JIM A;  5EPP A;  3QQ7 A;  1OA7 A;  1YNJ D;  2WAQ A;  3GTJ A;  2PIC A;  1TWA A;  2HCZ X;  4JP7 A;  1QDN A;  4AVR A;  3PLX B;  2JA7 A;  4KDL A;  3X2M A;  2BH0 A;  1SFO A;  1BW4 A;  5C18 A;  1AW8 B;  1E32 A;  1VC3 B;  1TWG A;  1SIW A;  2O5J D;  2ENG A;  5GLX A;  3X2K A;  2PMZ A;  1PYQ A;  1R7R A;  3ML1 A;  3H0G A;  4AZD A;  2E2H A;  1BW3 A;  5B6C A;  1FDO A;  1N10 A;  3X2N A;  4AOK B;  2IV2 X;  2NVX A;  4CRZ A;  1DMS A;  5FTN A;  1WC2 A;  2JIQ A;  3X2G A;  2E2I A;  2V3V A;  1Y5I A;  1R27 A;  4L48 A;  5T5M D;  3QC8 A;  2NAP A;  3X2J A;  2R93 A;  1HD5 A;  3TIW A;  4FER A;  1TWH A;  3SUL A;  3M3G A;  4FG2 A;  1E61 A;  1CZ4 A;  1PPY A;  1KQG A;  2BE5 D;  3IR5 A;  4CS0 A;  2VUM A;  2E7Z A; 
#chains in the Genus database with same CATH homology
 1CR5 A;  1G8J A;  4KO8 A;  3TM7 B;  2A6E D;  1K83 A;  1CZ5 A;  1QCS A;  3HU1 A;  4AYB A;  2R7Z A;  1UHE A;  1E5V A;  1WLF A;  2WB1 A;  2GAE A;  2PJH B;  2C45 A;  2VPW A;  3IR6 A;  1H0H A;  3GTL A;  2AE0 X;  1ZC1 A;  2A68 D;  3GTO A;  2JA6 A;  5C1B A;  1R9T A;  4GA5 A;  2YUJ A;  3GTG A;  1PT1 A;  3OUG A;  1EU1 A;  2PNW A;  3HKZ A;  2JA5 A;  2DMR A;  2B63 A;  2PI8 A;  1Y1V A;  1PT0 A;  1Q16 A;  3HU2 A;  1KQF A;  1UHD A;  3FKI A;  5FTL A;  2JIR A;  4NOH A;  3DMR A;  5FTJ A;  1AA6 A;  1E60 A;  2A6H D;  4GA6 A;  3QWZ A;  4AAY A;  4CRY G;  2VPY A;  3GTQ A;  1H5N A;  3HU3 A;  4C2M A;  3GTM A;  1PQE A;  2Y0S A;  1WCM A;  1SMY D;  1ZYR D;  1FDI A;  2G5D A;  2VPX A;  1I3Q A;  1TMO A;  4KOD A;  2G6G A;  3IR7 A;  5DYG A;  1PYU B;  2VPZ A;  4DMR A;  1I50 A;  2YU9 A;  1DMR A;  1Y4Z A;  1TWC A;  2A69 D;  2CW0 D;  5GLF A;  2JIP A;  1YNN D;  1PQF A;  1G8K A;  1E18 A;  1S3S A;  4AON B;  2V45 A;  1IW7 D;  3CZB A;  1Y1W A;  1TWF A;  5DYI A;  3CF2 A;  5FTK A;  3GTK A;  2EEO B;  3GTP A;  3QQ8 A;  4KLN A;  1PQH A;  5FTM A;  2KI8 A;  2PJJ A;  4KDI A;  5T5I D;  2NVY A;  2JIO A;  1OGY A;  3O5A A;  2R92 A;  1YLE A;  4RV0 A;  3CQZ A;  4D7Z B;  4QIW A;  2NYA A;  2JIM A;  5EPP A;  3QQ7 A;  1YNJ D;  2WAQ A;  3GTJ A;  2PIC A;  1TWA A;  1QDN A;  3PLX B;  2JA7 A;  4KDL A;  1SFO A;  5C18 A;  1AW8 B;  1E32 A;  1VC3 B;  1TWG A;  1SIW A;  2O5J D;  2PMZ A;  1PYQ A;  1R7R A;  3ML1 A;  3H0G A;  4AZD A;  2E2H A;  5B6C A;  1FDO A;  4AOK B;  2IV2 X;  2NVX A;  4CRZ A;  1DMS A;  5FTN A;  2JIQ A;  2E2I A;  2V3V A;  1Y5I A;  1R27 A;  5T5M D;  2R93 A;  3QC8 A;  2NAP A;  3TIW A;  1TWH A;  1E61 A;  1CZ4 A;  1PPY A;  1KQG A;  2BE5 D;  3IR5 A;  4CS0 A;  2VUM A;  2E7Z A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...