5GLYA

Crystal structure of a glycoside hydrolase in complex with cellotetrose from thielavia terrestris nrrl 8126
Total Genus 71
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
71
sequence length
213
structure length
213
Chain Sequence
ASGSGQSTRYWDCCKPSCAWPGKAAVSQPVYACDANFQRLSDFNVQSGCNGGSAYSCADQTPWAVNDNLAYGFAATSIAGGSESSWCCACYALTFTSGPVAGKTMVVQSTSTGGDLGSNQFDIAMPGGGVGIFNGCSSQFGGLPGAQYGGISSRDQCDSFPAPLKPGCQWRFDWFQNADNPTFTFQQVQCPAEIVARSGCKRNDDSSFPVFTP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Thielavia terrestris nrrl 8126
publication title Characterization and crystal structure of a thermostable glycoside hydrolase family 45 1,4-beta-endoglucanase from Thielavia terrestris
pubmed doi rcsb
molecule keywords Glycoside hydrolase family 45 protein
total genus 71
structure length 213
sequence length 213
ec nomenclature
pdb deposition date 2016-07-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02015 Glyco_hydro_45 Glycosyl hydrolase family 45
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 5glyA00
4FFTA 4ZM7A 3X2HA 4ENGA 3SULA 2PICA 3SUJA 3X2PA 1HD5A 2PNWA 4L48A 3X2IA 3M3GA 1N10A 5GM9A 4JJOA 2ENGA 5GLXA 1BW3A 4AVRA 3X2MA 2G6GA 1L8FA 4JCWA 3X2GA 4FG4A 1WC2A 3D30A 4FERA 1OA9A 2HCZX 2PI8A 3X2LA 3X2JA 3SUKA 3X2KA 2PJJA 4FG2A 5GLYA 3CZBA 2AE0X 5H4UA 3X2OA 2BH0A 2GAEA 1BW4A 3ENGA 4JP6A 2G5DA 1OA7A 2KQAA 4JP7A 3X2NA 4JS7A 3SUMA
chains in the Genus database with same CATH superfamily
1PT0A 1G8KA 4ZM7A 3X2HA 1S3SA 1I3QA 1PQHA 2PICA 4QIWA 3SUJA 3GTKA 2B63A 2JIQA 2A6ED 3OUGA 3M3GA 1H0HA 1Y1WA 3IR6A 2O5JD 5DYGA 1WCMA 2VPWA 2VPZA 3X2GA 1AA6A 3QC8A 1FDIA 3GTJA 1WC2A 1SIWA 4GA5A 2DMRA 1E60A 4FERA 3IR7A 5EPPA 4AONB 1OA9A 3X2LA 1DMRA 5GLFA 5C1BA 2NYAA 4AOKB 2JIOA 1ZYRD 3HU1A 2V3VA 3IR5A 1QDNA 1TWGA 5H4UA 3X2OA 3ENGA 5C18A 1OA7A 2YUJA 4CRZA 1R7RA 1PYUB 5DYIA 1YNND 1H5NA 1OGYA 4ENGA 1UHEA 3FKIA 1QCSA 4L48A 1E61A 1PPYA 4GA6A 4RV0A 2V45A 2JA5A 5GM9A 3ML1A 2ENGA 2YU9A 5FTMA 3GTMA 4AVRA 2G6GA 1PQEA 2EEOB 2JIMA 2R93A 3QWZA 4KODA 1YNJD 2A6HD 1SMYD 2R7ZA 2E2IA 2E2HA 4CS0A 1CR5A 2PI8A 1VC3B 4C2MA 1SFOA 1PQFA 3GTOA 1G8JA 3X2KA 4FG2A 4KDLA 3GTQA 1K83A 2VPYA 2JA6A 1Y4ZA 1PT1A 5FTJA 5B6CA 1KQGA 2AE0X 3TM7B 2BH0A 1Y5IA 2GAEA 4AZDA 3HKZA 2KQAA 1YLEA 3SUMA 5FTKA 4CRYG 3HU3A 5T5MD 1KQFA 3DMRA 3PLXB 1HD5A 5T5ID 4D7ZB 2PMZA 2NVXA 1N10A 1DMSA 4JJOA 5GLXA 1R9TA 1E18A 1L8FA 1WLFA 2PJHB 4AYBA 3D30A 2CW0D 1TWAA 1I50A 1E5VA 2HCZX 2IV2X 3QQ8A 4KLNA 4NOHA 3HU2A 3O5AA 3QQ7A 1TWFA 2WAQA 2A68D 1IW7D 1UHDA 2JIPA 2JIRA 4JP7A 1R27A 3X2NA 4JS7A 2R92A 1EU1A 1AW8B 4DMRA 4FFTA 3TIWA 2VUMA 1TWCA 2A69D 1CZ4A 3SULA 3GTLA 1E32A 3CQZA 3X2PA 2Y0SA 2PNWA 1FDOA 3X2IA 1BW3A 2WB1A 3CF2A 1TMOA 2NAPA 2BE5D 4AAYA 2E7ZA 3X2MA 2VPXA 4JCWA 1TWHA 5FTNA 4FG4A 5FTLA 3GTPA 3H0GA 1PYQA 2NVYA 3GTGA 1Q16A 1Y1VA 2KI8A 3X2JA 1ZC1A 3SUKA 2PJJA 4KO8A 5GLYA 2C45A 3CZBA 1BW4A 2JA7A 4KDIA 4JP6A 2G5DA 1CZ5A
chains in the Genus database with same CATH topology
4FFTA 4ZM7A 3X2HA 4ENGA 3SULA 2PICA 3SUJA 3X2PA 1HD5A 2PNWA 4L48A 3X2IA 3M3GA 1N10A 5GM9A 4JJOA 2ENGA 5GLXA 1BW3A 4AVRA 3X2MA 2G6GA 1L8FA 4JCWA 3X2GA 4FG4A 1WC2A 3D30A 4FERA 1OA9A 2HCZX 2PI8A 3X2LA 3X2JA 3SUKA 3X2KA 2PJJA 4FG2A 5GLYA 3CZBA 2AE0X 5H4UA 3X2OA 2BH0A 2GAEA 1BW4A 3ENGA 4JP6A 2G5DA 1OA7A 2KQAA 4JP7A 3X2NA 4JS7A 3SUMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FFT A;  4ZM7 A;  3X2H A;  4ENG A;  3SUL A;  2PIC A;  3SUJ A;  3X2P A;  1HD5 A;  2PNW A;  4L48 A;  3X2I A;  3M3G A;  1N10 A;  5GM9 A;  4JJO A;  2ENG A;  5GLX A;  1BW3 A;  4AVR A;  3X2M A;  2G6G A;  1L8F A;  4JCW A;  3X2G A;  4FG4 A;  1WC2 A;  3D30 A;  4FER A;  1OA9 A;  2HCZ X;  2PI8 A;  3X2L A;  3X2J A;  3SUK A;  3X2K A;  2PJJ A;  4FG2 A;  5GLY A;  3CZB A;  2AE0 X;  5H4U A;  3X2O A;  2BH0 A;  2GAE A;  1BW4 A;  3ENG A;  4JP6 A;  2G5D A;  1OA7 A;  2KQA A;  4JP7 A;  3X2N A;  4JS7 A;  3SUM A; 
#chains in the Genus database with same CATH topology
 1PT0 A;  1G8K A;  4ZM7 A;  3X2H A;  1S3S A;  1I3Q A;  1PQH A;  2PIC A;  4QIW A;  3SUJ A;  3GTK A;  2B63 A;  2JIQ A;  2A6E D;  3OUG A;  3M3G A;  1H0H A;  1Y1W A;  3IR6 A;  2O5J D;  5DYG A;  1WCM A;  2VPW A;  2VPZ A;  3X2G A;  1AA6 A;  3QC8 A;  1FDI A;  3GTJ A;  1WC2 A;  1SIW A;  4GA5 A;  2DMR A;  1E60 A;  4FER A;  3IR7 A;  5EPP A;  4AON B;  1OA9 A;  3X2L A;  1DMR A;  5GLF A;  5C1B A;  2NYA A;  4AOK B;  2JIO A;  1ZYR D;  3HU1 A;  2V3V A;  3IR5 A;  1QDN A;  1TWG A;  5H4U A;  3X2O A;  3ENG A;  5C18 A;  1OA7 A;  2YUJ A;  4CRZ A;  1R7R A;  1PYU B;  5DYI A;  1YNN D;  1H5N A;  1OGY A;  4ENG A;  1UHE A;  3FKI A;  1QCS A;  4L48 A;  1E61 A;  1PPY A;  4GA6 A;  4RV0 A;  2V45 A;  2JA5 A;  5GM9 A;  3ML1 A;  2ENG A;  2YU9 A;  5FTM A;  3GTM A;  4AVR A;  2G6G A;  1PQE A;  2EEO B;  2JIM A;  2R93 A;  3QWZ A;  4KOD A;  1YNJ D;  2A6H D;  1SMY D;  2R7Z A;  2E2I A;  2E2H A;  4CS0 A;  1CR5 A;  2PI8 A;  1VC3 B;  4C2M A;  1SFO A;  1PQF A;  3GTO A;  1G8J A;  3X2K A;  4FG2 A;  4KDL A;  3GTQ A;  1K83 A;  2VPY A;  2JA6 A;  1Y4Z A;  1PT1 A;  5FTJ A;  5B6C A;  1KQG A;  2AE0 X;  3TM7 B;  2BH0 A;  1Y5I A;  2GAE A;  4AZD A;  3HKZ A;  2KQA A;  1YLE A;  3SUM A;  5FTK A;  4CRY G;  3HU3 A;  5T5M D;  1KQF A;  3DMR A;  3PLX B;  1HD5 A;  5T5I D;  4D7Z B;  2PMZ A;  2NVX A;  1N10 A;  1DMS A;  4JJO A;  5GLX A;  1R9T A;  1E18 A;  1L8F A;  1WLF A;  2PJH B;  4AYB A;  3D30 A;  2CW0 D;  1TWA A;  1I50 A;  1E5V A;  2HCZ X;  2IV2 X;  3QQ8 A;  4KLN A;  4NOH A;  3HU2 A;  3O5A A;  3QQ7 A;  1TWF A;  2WAQ A;  2A68 D;  1IW7 D;  1UHD A;  2JIP A;  2JIR A;  4JP7 A;  1R27 A;  3X2N A;  4JS7 A;  2R92 A;  1EU1 A;  1AW8 B;  4DMR A;  4FFT A;  3TIW A;  2VUM A;  1TWC A;  2A69 D;  1CZ4 A;  3SUL A;  3GTL A;  1E32 A;  3CQZ A;  3X2P A;  2Y0S A;  2PNW A;  1FDO A;  3X2I A;  1BW3 A;  2WB1 A;  3CF2 A;  1TMO A;  2NAP A;  2BE5 D;  4AAY A;  2E7Z A;  3X2M A;  2VPX A;  4JCW A;  1TWH A;  5FTN A;  4FG4 A;  5FTL A;  3GTP A;  3H0G A;  1PYQ A;  2NVY A;  3GTG A;  1Q16 A;  1Y1V A;  2KI8 A;  3X2J A;  1ZC1 A;  3SUK A;  2PJJ A;  4KO8 A;  5GLY A;  2C45 A;  3CZB A;  1BW4 A;  2JA7 A;  4KDI A;  4JP6 A;  2G5D A;  1CZ5 A; 
#chains in the Genus database with same CATH homology
 4FFT A;  4ZM7 A;  3X2H A;  4ENG A;  3SUL A;  2PIC A;  3SUJ A;  3X2P A;  1HD5 A;  2PNW A;  4L48 A;  3X2I A;  3M3G A;  1N10 A;  5GM9 A;  4JJO A;  2ENG A;  5GLX A;  1BW3 A;  4AVR A;  3X2M A;  2G6G A;  1L8F A;  4JCW A;  3X2G A;  4FG4 A;  1WC2 A;  3D30 A;  4FER A;  1OA9 A;  2HCZ X;  2PI8 A;  3X2L A;  3X2J A;  3SUK A;  3X2K A;  2PJJ A;  4FG2 A;  5GLY A;  3CZB A;  2AE0 X;  5H4U A;  3X2O A;  2BH0 A;  2GAE A;  1BW4 A;  3ENG A;  4JP6 A;  2G5D A;  1OA7 A;  2KQA A;  4JP7 A;  3X2N A;  4JS7 A;  3SUM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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