4JP6A

High resolution structure of a papaya barwin-like protein
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
122
structure length
122
Chain Sequence
ESASNVRATYHFYNAQQNGWDLRKVSAYCATWDADKPYSWRSKYGWTAFCGPVGPHGRAACGKCLRVTNTKTRAETTVRIVDQCSNGGLDLDWSVFKKLDTDGSGYLRGHLIVNYQFVNCGN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title High-resolution structure of a papaya plant-defence barwin-like protein solved by in-house sulfur-SAD phasing.
pubmed doi rcsb
molecule keywords papaya barwin-like protein
molecule tags Unknown function
total genus 42
structure length 122
sequence length 122
ec nomenclature
pdb deposition date 2013-03-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00967 Barwin Barwin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 4jp6A00
3X2HA 3X2JA 3M3GA 1OA7A 4JS7A 1N10A 4FFTA 4JJOA 2G6GA 4AVRA 3X2NA 2PJJA 3X2OA 5GLXA 3SULA 3X2KA 2BH0A 4JP7A 3SUMA 3X2MA 3X2PA 1BW3A 4L48A 5GM9A 3SUJA 3CZBA 4FG4A 4JP6A 3X2GA 2PI8A 2AE0X 3D30A 3SUKA 1HD5A 1BW4A 4FG2A 4ENGA 2PNWA 4ZM7A 2PICA 4JCWA 2GAEA 2ENGA 4FERA 5GLYA 1L8FA 3ENGA 1OA9A 3X2LA 2HCZX 1WC2A 2KQAA 5H4UA 2G5DA 3X2IA
chains in the Genus database with same CATH superfamily
1H5NA 1TWAA 2V45A 2JIPA 1VC3B 1S3SA 4FFTA 2JA6A 4JJOA 3H0GA 1K83A 1Y5IA 2NVYA 3HKZA 1PT1A 1PQEA 2JIOA 1TWGA 3PLXB 1CZ5A 4AAYA 1TWHA 1CR5A 3GTJA 3CZBA 5T5ID 3HU1A 2BE5D 3X2GA 3GTLA 5B6CA 3D30A 2JA5A 1QDNA 1ZC1A 1Y1WA 1BW4A 1I3QA 3GTPA 3GTGA 4KDIA 1PPYA 4JCWA 4GA5A 1L8FA 1UHDA 2NYAA 3X2LA 4KODA 1G8JA 4QIWA 2KQAA 1R7RA 1OGYA 1YNJD 2VPZA 1TWCA 1H0HA 2VPXA 4KLNA 1AW8B 4AZDA 2G6GA 1SFOA 3O5AA 4AVRA 3X2NA 1SMYD 1DMSA 1WLFA 2PJJA 3QWZA 5C1BA 2E2IA 5GLXA 4JP7A 2JIRA 4KDLA 3GTMA 1KQFA 5FTJA 2E7ZA 5GM9A 1FDOA 3CF2A 3IR5A 3GTQA 2PI8A 3DMRA 3ML1A 2AE0X 2R92A 1EU1A 3SUKA 2IV2X 1HD5A 2NVXA 5DYGA 4AYBA 5T5MD 1PT0A 1PYQA 4ZM7A 4DMRA 1Y4ZA 1YNND 4CS0A 1OA9A 1E18A 2VPYA 1TMOA 2C45A 3QC8A 2HCZX 2R93A 3M3GA 5H4UA 2G5DA 2JIMA 2KI8A 2JIQA 3X2IA 3X2HA 3X2JA 5C18A 2VUMA 4JS7A 3IR7A 1N10A 2PJHB 4RV0A 1KQGA 1IW7D 5FTMA 3TM7B 1PQFA 3SULA 1R9TA 2BH0A 2DMRA 3OUGA 3SUMA 2EEOB 1QCSA 2WB1A 1Y1VA 1BW3A 1TWFA 1FDIA 2A68D 4FG4A 4JP6A 1E60A 4CRYG 2NAPA 2VPWA 3HU2A 2A6HD 2PNWA 2PMZA 4CRZA 1I50A 4FERA 5GLYA 3ENGA 2O5JD 1WC2A 1E61A 1SIWA 1R27A 1Q16A 5FTNA 4C2MA 2WAQA 4KO8A 4D7ZB 1OA7A 2CW0D 1UHEA 1WCMA 3TIWA 5DYIA 2YUJA 2V3VA 3X2OA 2A69D 2JA7A 1G8KA 1ZYRD 2YU9A 3X2KA 5FTKA 3HU3A 3X2MA 3X2PA 1AA6A 1DMRA 2B63A 4L48A 4AONB 3SUJA 4GA6A 1E32A 1YLEA 2A6ED 1PQHA 1E5VA 2R7ZA 4FG2A 1PYUB 4ENGA 5GLFA 5EPPA 3GTOA 1CZ4A 2PICA 2GAEA 2ENGA 3IR6A 4AOKB 3QQ7A 3GTKA 5FTLA 3CQZA 2E2HA 3FKIA 3QQ8A 2Y0SA 4NOHA
chains in the Genus database with same CATH topology
3X2HA 3X2JA 3M3GA 1OA7A 4JS7A 1N10A 4FFTA 4JJOA 2G6GA 4AVRA 3X2NA 2PJJA 3X2OA 5GLXA 3SULA 3X2KA 2BH0A 4JP7A 3SUMA 3X2MA 3X2PA 1BW3A 4L48A 5GM9A 3SUJA 3CZBA 4FG4A 4JP6A 3X2GA 2PI8A 2AE0X 3D30A 3SUKA 1HD5A 1BW4A 4FG2A 4ENGA 2PNWA 4ZM7A 2PICA 4JCWA 2GAEA 2ENGA 4FERA 5GLYA 1L8FA 3ENGA 1OA9A 3X2LA 2HCZX 1WC2A 2KQAA 5H4UA 2G5DA 3X2IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3X2H A;  3X2J A;  3M3G A;  1OA7 A;  4JS7 A;  1N10 A;  4FFT A;  4JJO A;  2G6G A;  4AVR A;  3X2N A;  2PJJ A;  3X2O A;  5GLX A;  3SUL A;  3X2K A;  2BH0 A;  4JP7 A;  3SUM A;  3X2M A;  3X2P A;  1BW3 A;  4L48 A;  5GM9 A;  3SUJ A;  3CZB A;  4FG4 A;  4JP6 A;  3X2G A;  2PI8 A;  2AE0 X;  3D30 A;  3SUK A;  1HD5 A;  1BW4 A;  4FG2 A;  4ENG A;  2PNW A;  4ZM7 A;  2PIC A;  4JCW A;  2GAE A;  2ENG A;  4FER A;  5GLY A;  1L8F A;  3ENG A;  1OA9 A;  3X2L A;  2HCZ X;  1WC2 A;  2KQA A;  5H4U A;  2G5D A;  3X2I A; 
#chains in the Genus database with same CATH topology
 1H5N A;  1TWA A;  2V45 A;  2JIP A;  1VC3 B;  1S3S A;  4FFT A;  2JA6 A;  4JJO A;  3H0G A;  1K83 A;  1Y5I A;  2NVY A;  3HKZ A;  1PT1 A;  1PQE A;  2JIO A;  1TWG A;  3PLX B;  1CZ5 A;  4AAY A;  1TWH A;  1CR5 A;  3GTJ A;  3CZB A;  5T5I D;  3HU1 A;  2BE5 D;  3X2G A;  3GTL A;  5B6C A;  3D30 A;  2JA5 A;  1QDN A;  1ZC1 A;  1Y1W A;  1BW4 A;  1I3Q A;  3GTP A;  3GTG A;  4KDI A;  1PPY A;  4JCW A;  4GA5 A;  1L8F A;  1UHD A;  2NYA A;  3X2L A;  4KOD A;  1G8J A;  4QIW A;  2KQA A;  1R7R A;  1OGY A;  1YNJ D;  2VPZ A;  1TWC A;  1H0H A;  2VPX A;  4KLN A;  1AW8 B;  4AZD A;  2G6G A;  1SFO A;  3O5A A;  4AVR A;  3X2N A;  1SMY D;  1DMS A;  1WLF A;  2PJJ A;  3QWZ A;  5C1B A;  2E2I A;  5GLX A;  4JP7 A;  2JIR A;  4KDL A;  3GTM A;  1KQF A;  5FTJ A;  2E7Z A;  5GM9 A;  1FDO A;  3CF2 A;  3IR5 A;  3GTQ A;  2PI8 A;  3DMR A;  3ML1 A;  2AE0 X;  2R92 A;  1EU1 A;  3SUK A;  2IV2 X;  1HD5 A;  2NVX A;  5DYG A;  4AYB A;  5T5M D;  1PT0 A;  1PYQ A;  4ZM7 A;  4DMR A;  1Y4Z A;  1YNN D;  4CS0 A;  1OA9 A;  1E18 A;  2VPY A;  1TMO A;  2C45 A;  3QC8 A;  2HCZ X;  2R93 A;  3M3G A;  5H4U A;  2G5D A;  2JIM A;  2KI8 A;  2JIQ A;  3X2I A;  3X2H A;  3X2J A;  5C18 A;  2VUM A;  4JS7 A;  3IR7 A;  1N10 A;  2PJH B;  4RV0 A;  1KQG A;  1IW7 D;  5FTM A;  3TM7 B;  1PQF A;  3SUL A;  1R9T A;  2BH0 A;  2DMR A;  3OUG A;  3SUM A;  2EEO B;  1QCS A;  2WB1 A;  1Y1V A;  1BW3 A;  1TWF A;  1FDI A;  2A68 D;  4FG4 A;  4JP6 A;  1E60 A;  4CRY G;  2NAP A;  2VPW A;  3HU2 A;  2A6H D;  2PNW A;  2PMZ A;  4CRZ A;  1I50 A;  4FER A;  5GLY A;  3ENG A;  2O5J D;  1WC2 A;  1E61 A;  1SIW A;  1R27 A;  1Q16 A;  5FTN A;  4C2M A;  2WAQ A;  4KO8 A;  4D7Z B;  1OA7 A;  2CW0 D;  1UHE A;  1WCM A;  3TIW A;  5DYI A;  2YUJ A;  2V3V A;  3X2O A;  2A69 D;  2JA7 A;  1G8K A;  1ZYR D;  2YU9 A;  3X2K A;  5FTK A;  3HU3 A;  3X2M A;  3X2P A;  1AA6 A;  1DMR A;  2B63 A;  4L48 A;  4AON B;  3SUJ A;  4GA6 A;  1E32 A;  1YLE A;  2A6E D;  1PQH A;  1E5V A;  2R7Z A;  4FG2 A;  1PYU B;  4ENG A;  5GLF A;  5EPP A;  3GTO A;  1CZ4 A;  2PIC A;  2GAE A;  2ENG A;  3IR6 A;  4AOK B;  3QQ7 A;  3GTK A;  5FTL A;  3CQZ A;  2E2H A;  3FKI A;  3QQ8 A;  2Y0S A;  4NOH A; 
#chains in the Genus database with same CATH homology
 3X2H A;  3X2J A;  3M3G A;  1OA7 A;  4JS7 A;  1N10 A;  4FFT A;  4JJO A;  2G6G A;  4AVR A;  3X2N A;  2PJJ A;  3X2O A;  5GLX A;  3SUL A;  3X2K A;  2BH0 A;  4JP7 A;  3SUM A;  3X2M A;  3X2P A;  1BW3 A;  4L48 A;  5GM9 A;  3SUJ A;  3CZB A;  4FG4 A;  4JP6 A;  3X2G A;  2PI8 A;  2AE0 X;  3D30 A;  3SUK A;  1HD5 A;  1BW4 A;  4FG2 A;  4ENG A;  2PNW A;  4ZM7 A;  2PIC A;  4JCW A;  2GAE A;  2ENG A;  4FER A;  5GLY A;  1L8F A;  3ENG A;  1OA9 A;  3X2L A;  2HCZ X;  1WC2 A;  2KQA A;  5H4U A;  2G5D A;  3X2I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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