4JP6A

High resolution structure of a papaya barwin-like protein
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
122
structure length
122
Chain Sequence
ESASNVRATYHFYNAQQNGWDLRKVSAYCATWDADKPYSWRSKYGWTAFCGPVGPHGRAACGKCLRVTNTKTRAETTVRIVDQCSNGGLDLDWSVFKKLDTDGSGYLRGHLIVNYQFVNCGN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
publication title High-resolution structure of a papaya plant-defence barwin-like protein solved by in-house sulfur-SAD phasing.
pubmed doi rcsb
molecule keywords papaya barwin-like protein
total genus 42
structure length 122
sequence length 122
ec nomenclature
pdb deposition date 2013-03-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00967 Barwin Barwin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 4jp6A00
2HCZX 3SUKA 4ENGA 5H4UA 2PNWA 5GLYA 4AVRA 3X2GA 2PICA 4JCWA 3CZBA 3X2NA 5GLXA 2AE0X 4FERA 2KQAA 4JP7A 3X2JA 4JJOA 2ENGA 3M3GA 1OA9A 4FG2A 2PI8A 3SUJA 2BH0A 1BW4A 2G6GA 3SULA 3X2PA 1BW3A 3ENGA 3X2LA 4FG4A 3X2HA 4L48A 3D30A 4JP6A 2G5DA 2PJJA 4ZM7A 4FFTA 3X2IA 4JS7A 5GM9A 3X2OA 3X2KA 1WC2A 1OA7A 1N10A 3SUMA 1HD5A 1L8FA 3X2MA 2GAEA
chains in the Genus database with same CATH superfamily
1IW7D 5H4UA 5B6CA 1R9TA 2B63A 2C45A 1UHEA 2IV2X 2R92A 1PQEA 1I50A 1Y5IA 3X2NA 1WCMA 2BE5D 1UHDA 4AYBA 4AAYA 3X2JA 4JJOA 3HU3A 3M3GA 5C1BA 1OA9A 1Q16A 2PMZA 3IR7A 1H5NA 3X2LA 4FG4A 4L48A 1TWCA 4JP6A 2YU9A 3TM7B 2JIPA 3CF2A 1E32A 5FTLA 4QIWA 4JS7A 1YNJD 1Y4ZA 3QQ7A 3SUMA 2GAEA 1PYQA 2HCZX 2NVYA 2E2IA 1FDOA 1G8JA 1E18A 3HU2A 5GLYA 3X2GA 3GTPA 1WLFA 1SFOA 1G8KA 2E7ZA 2JA7A 2NAPA 4AOKB 4D7ZB 1TWGA 1EU1A 2WAQA 5T5MD 4FG2A 1DMSA 2CW0D 1BW3A 2A68D 1TWFA 2JIMA 5C18A 3D30A 4KDIA 2V3VA 1SIWA 4ZM7A 4CRZA 1AW8B 5FTKA 1TWHA 3H0GA 3X2OA 3GTOA 4KODA 4KLNA 1QDNA 3HKZA 1ZYRD 2VPWA 1K83A 1KQGA 3SUKA 4AVRA 3O5AA 2A69D 3FKIA 2PICA 2R7ZA 3GTQA 1SMYD 1Y1VA 4JCWA 3ML1A 1PQHA 5DYIA 1CZ5A 4GA5A 3CQZA 4FERA 1I3QA 1TWAA 2R93A 3IR6A 3SUJA 1AA6A 2PI8A 1BW4A 2G6GA 3PLXB 3X2PA 4DMRA 2JA6A 1PT1A 1VC3B 1YNND 2PJHB 2G5DA 1H0HA 1PT0A 3GTLA 2V45A 1E61A 5GM9A 4CRYG 1PQFA 3X2KA 1WC2A 3GTMA 1OGYA 2A6HD 5GLFA 2O5JD 2NVXA 1HD5A 2VPYA 2A6ED 3QWZA 1CR5A 1E60A 5FTJA 3TIWA 2JIOA 4ENGA 4C2MA 2PNWA 3DMRA 3GTJA 1TMOA 1YLEA 2KI8A 2JIQA 1QCSA 2JIRA 1ZC1A 2JA5A 5EPPA 3OUGA 1S3SA 2DMRA 3CZBA 5GLXA 4AONB 1FDIA 2AE0X 1CZ4A 5DYGA 4NOHA 2KQAA 4JP7A 1E5VA 1PYUB 3GTGA 2ENGA 1PPYA 3QQ8A 2BH0A 5FTMA 3SULA 1KQFA 5T5ID 4KDLA 3ENGA 3IR5A 3X2HA 2E2HA 2NYAA 2VPZA 2VPXA 1DMRA 2PJJA 4KO8A 5FTNA 4FFTA 1R7RA 3X2IA 3QC8A 2Y0SA 1R27A 4GA6A 2YUJA 3HU1A 1OA7A 1N10A 4AZDA 4CS0A 2EEOB 2WB1A 1Y1WA 4RV0A 1L8FA 2VUMA 3X2MA 3GTKA
chains in the Genus database with same CATH topology
2HCZX 3SUKA 4ENGA 5H4UA 2PNWA 5GLYA 4AVRA 3X2GA 2PICA 4JCWA 3CZBA 3X2NA 5GLXA 2AE0X 4FERA 2KQAA 4JP7A 3X2JA 4JJOA 2ENGA 3M3GA 1OA9A 4FG2A 2PI8A 3SUJA 2BH0A 1BW4A 2G6GA 3SULA 3X2PA 1BW3A 3ENGA 3X2LA 4FG4A 3X2HA 4L48A 3D30A 4JP6A 2G5DA 2PJJA 4ZM7A 4FFTA 3X2IA 4JS7A 5GM9A 3X2OA 3X2KA 1WC2A 1OA7A 1N10A 3SUMA 1HD5A 1L8FA 3X2MA 2GAEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HCZ X;  3SUK A;  4ENG A;  5H4U A;  2PNW A;  5GLY A;  4AVR A;  3X2G A;  2PIC A;  4JCW A;  3CZB A;  3X2N A;  5GLX A;  2AE0 X;  4FER A;  2KQA A;  4JP7 A;  3X2J A;  4JJO A;  2ENG A;  3M3G A;  1OA9 A;  4FG2 A;  2PI8 A;  3SUJ A;  2BH0 A;  1BW4 A;  2G6G A;  3SUL A;  3X2P A;  1BW3 A;  3ENG A;  3X2L A;  4FG4 A;  3X2H A;  4L48 A;  3D30 A;  4JP6 A;  2G5D A;  2PJJ A;  4ZM7 A;  4FFT A;  3X2I A;  4JS7 A;  5GM9 A;  3X2O A;  3X2K A;  1WC2 A;  1OA7 A;  1N10 A;  3SUM A;  1HD5 A;  1L8F A;  3X2M A;  2GAE A; 
#chains in the Genus database with same CATH topology
 1IW7 D;  5H4U A;  5B6C A;  1R9T A;  2B63 A;  2C45 A;  1UHE A;  2IV2 X;  2R92 A;  1PQE A;  1I50 A;  1Y5I A;  3X2N A;  1WCM A;  2BE5 D;  1UHD A;  4AYB A;  4AAY A;  3X2J A;  4JJO A;  3HU3 A;  3M3G A;  5C1B A;  1OA9 A;  1Q16 A;  2PMZ A;  3IR7 A;  1H5N A;  3X2L A;  4FG4 A;  4L48 A;  1TWC A;  4JP6 A;  2YU9 A;  3TM7 B;  2JIP A;  3CF2 A;  1E32 A;  5FTL A;  4QIW A;  4JS7 A;  1YNJ D;  1Y4Z A;  3QQ7 A;  3SUM A;  2GAE A;  1PYQ A;  2HCZ X;  2NVY A;  2E2I A;  1FDO A;  1G8J A;  1E18 A;  3HU2 A;  5GLY A;  3X2G A;  3GTP A;  1WLF A;  1SFO A;  1G8K A;  2E7Z A;  2JA7 A;  2NAP A;  4AOK B;  4D7Z B;  1TWG A;  1EU1 A;  2WAQ A;  5T5M D;  4FG2 A;  1DMS A;  2CW0 D;  1BW3 A;  2A68 D;  1TWF A;  2JIM A;  5C18 A;  3D30 A;  4KDI A;  2V3V A;  1SIW A;  4ZM7 A;  4CRZ A;  1AW8 B;  5FTK A;  1TWH A;  3H0G A;  3X2O A;  3GTO A;  4KOD A;  4KLN A;  1QDN A;  3HKZ A;  1ZYR D;  2VPW A;  1K83 A;  1KQG A;  3SUK A;  4AVR A;  3O5A A;  2A69 D;  3FKI A;  2PIC A;  2R7Z A;  3GTQ A;  1SMY D;  1Y1V A;  4JCW A;  3ML1 A;  1PQH A;  5DYI A;  1CZ5 A;  4GA5 A;  3CQZ A;  4FER A;  1I3Q A;  1TWA A;  2R93 A;  3IR6 A;  3SUJ A;  1AA6 A;  2PI8 A;  1BW4 A;  2G6G A;  3PLX B;  3X2P A;  4DMR A;  2JA6 A;  1PT1 A;  1VC3 B;  1YNN D;  2PJH B;  2G5D A;  1H0H A;  1PT0 A;  3GTL A;  2V45 A;  1E61 A;  5GM9 A;  4CRY G;  1PQF A;  3X2K A;  1WC2 A;  3GTM A;  1OGY A;  2A6H D;  5GLF A;  2O5J D;  2NVX A;  1HD5 A;  2VPY A;  2A6E D;  3QWZ A;  1CR5 A;  1E60 A;  5FTJ A;  3TIW A;  2JIO A;  4ENG A;  4C2M A;  2PNW A;  3DMR A;  3GTJ A;  1TMO A;  1YLE A;  2KI8 A;  2JIQ A;  1QCS A;  2JIR A;  1ZC1 A;  2JA5 A;  5EPP A;  3OUG A;  1S3S A;  2DMR A;  3CZB A;  5GLX A;  4AON B;  1FDI A;  2AE0 X;  1CZ4 A;  5DYG A;  4NOH A;  2KQA A;  4JP7 A;  1E5V A;  1PYU B;  3GTG A;  2ENG A;  1PPY A;  3QQ8 A;  2BH0 A;  5FTM A;  3SUL A;  1KQF A;  5T5I D;  4KDL A;  3ENG A;  3IR5 A;  3X2H A;  2E2H A;  2NYA A;  2VPZ A;  2VPX A;  1DMR A;  2PJJ A;  4KO8 A;  5FTN A;  4FFT A;  1R7R A;  3X2I A;  3QC8 A;  2Y0S A;  1R27 A;  4GA6 A;  2YUJ A;  3HU1 A;  1OA7 A;  1N10 A;  4AZD A;  4CS0 A;  2EEO B;  2WB1 A;  1Y1W A;  4RV0 A;  1L8F A;  2VUM A;  3X2M A;  3GTK A; 
#chains in the Genus database with same CATH homology
 2HCZ X;  3SUK A;  4ENG A;  5H4U A;  2PNW A;  5GLY A;  4AVR A;  3X2G A;  2PIC A;  4JCW A;  3CZB A;  3X2N A;  5GLX A;  2AE0 X;  4FER A;  2KQA A;  4JP7 A;  3X2J A;  4JJO A;  2ENG A;  3M3G A;  1OA9 A;  4FG2 A;  2PI8 A;  3SUJ A;  2BH0 A;  1BW4 A;  2G6G A;  3SUL A;  3X2P A;  1BW3 A;  3ENG A;  3X2L A;  4FG4 A;  3X2H A;  4L48 A;  3D30 A;  4JP6 A;  2G5D A;  2PJJ A;  4ZM7 A;  4FFT A;  3X2I A;  4JS7 A;  5GM9 A;  3X2O A;  3X2K A;  1WC2 A;  1OA7 A;  1N10 A;  3SUM A;  1HD5 A;  1L8F A;  3X2M A;  2GAE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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