4JP7A

High resolution structure of a papaya barwin-like protein (crystal form 2)
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
122
structure length
122
Chain Sequence
ESASNVRATYHFYNAQQNGWDLRKVSAYCATWDADKPYSWRSKYGWTAFCGPVGPHGRAACGKCLRVTNTKTRAETTVRIVDQCSNGGLDLDWSVFKKLDTDGSGYLRGHLIVNYQFVNCGN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords papaya barwin-like protein
publication title High-resolution structure of a papaya plant-defence barwin-like protein solved by in-house sulfur-SAD phasing.
pubmed doi rcsb
total genus 42
structure length 122
sequence length 122
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-03-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00967 Barwin Barwin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 4jp7A00
3SUJA 4FFTA 4JCWA 1L8FA 3X2NA 3X2LA 3ENGA 4FERA 2ENGA 2G6GA 4ZM7A 4FG2A 2PI8A 2PICA 1N10A 3X2IA 3X2GA 5GM9A 2AE0X 3CZBA 1BW3A 4ENGA 4JP7A 5GLXA 2PNWA 3X2PA 4AVRA 2HCZX 3D30A 1OA9A 4FG4A 3X2HA 1OA7A 2KQAA 3SUKA 1BW4A 3M3GA 2G5DA 2GAEA 1WC2A 3X2OA 5H4UA 3SUMA 3X2KA 4JJOA 1HD5A 4JS7A 2BH0A 5GLYA 3SULA 3X2JA 3X2MA 4JP6A 4L48A 2PJJA
chains in the Genus database with same CATH superfamily
2E2IA 4AAYA 5FTLA 1I50A 2V45A 4FERA 4C2MA 1YLEA 1AW8B 2PI8A 1TWAA 4CRYG 2PICA 1H0HA 5C1BA 4AYBA 3HU3A 3IR7A 2WAQA 3CZBA 3HKZA 1FDIA 1PQHA 2JA6A 2VPXA 5FTNA 1KQFA 3GTGA 1UHEA 2V3VA 1OA9A 1Y4ZA 2NAPA 2VPYA 2KQAA 4AZDA 1SIWA 1DMSA 1DMRA 4CRZA 2JIOA 1K83A 3IR5A 4JS7A 5C18A 1R9TA 1OGYA 1I3QA 3X2MA 2VPWA 1Q16A 2Y0SA 1Y1VA 4AOKB 1E61A 2VPZA 2YUJA 3SUJA 4JCWA 1TWCA 2A6HD 5B6CA 3CQZA 2CW0D 5EPPA 2EEOB 1Y5IA 3QC8A 4KODA 2PJHB 5GLFA 1TWFA 3X2GA 2B63A 1G8KA 1Y1WA 1PQEA 1BW3A 4JP7A 4CS0A 3HU1A 1TMOA 1R7RA 1OA7A 1SMYD 3SUKA 1CZ4A 1E60A 3M3GA 4DMRA 2G5DA 1WC2A 2O5JD 3X2OA 5H4UA 4GA5A 2A69D 1E5VA 1HD5A 2PMZA 1PT0A 2BH0A 1S3SA 3SULA 4L48A 5DYIA 5DYGA 2JIQA 4FFTA 1VC3B 2NVYA 1L8FA 3X2LA 3ENGA 2ENGA 3FKIA 2NYAA 4RV0A 1CR5A 1QDNA 4FG2A 5FTMA 2E2HA 1N10A 2JIMA 3X2IA 1FDOA 1EU1A 1TWGA 3QQ8A 4KLNA 2AE0X 5GM9A 2YU9A 2R93A 2E7ZA 3X2PA 2A6ED 2HCZX 3ML1A 4AVRA 1H5NA 5FTJA 2A68D 3X2HA 1WCMA 2JIPA 3GTPA 3SUMA 1WLFA 4JJOA 1UHDA 1G8JA 5FTKA 3X2JA 1TWHA 1ZYRD 1PYUB 2C45A 4JP6A 4KDIA 4D7ZB 1YNND 2KI8A 2JIRA 1YNJD 3HU2A 3DMRA 1E32A 2R7ZA 4GA6A 4NOHA 3X2NA 2BE5D 2NVXA 3O5AA 2JA7A 2G6GA 3H0GA 3GTLA 5T5MD 3IR6A 1CZ5A 1SFOA 1E18A 2IV2X 4KO8A 4ZM7A 1QCSA 1AA6A 2R92A 1PYQA 2DMRA 3GTOA 4QIWA 4ENGA 2JA5A 1PT1A 5GLXA 2PNWA 3D30A 4FG4A 1BW4A 3QQ7A 3CF2A 2GAEA 3OUGA 3GTMA 1PQFA 3GTJA 3QWZA 5T5ID 1PPYA 3X2KA 3GTKA 4AONB 3GTQA 1KQGA 1ZC1A 5GLYA 3PLXB 2VUMA 2WB1A 3TIWA 2PJJA 3TM7B 4KDLA 1IW7D 1R27A
chains in the Genus database with same CATH topology
3SUJA 4FFTA 4JCWA 1L8FA 3X2NA 3X2LA 3ENGA 4FERA 2ENGA 2G6GA 4ZM7A 4FG2A 2PI8A 2PICA 1N10A 3X2IA 3X2GA 5GM9A 2AE0X 3CZBA 1BW3A 4ENGA 4JP7A 5GLXA 2PNWA 3X2PA 4AVRA 2HCZX 3D30A 1OA9A 4FG4A 3X2HA 1OA7A 2KQAA 3SUKA 1BW4A 3M3GA 2G5DA 2GAEA 1WC2A 3X2OA 5H4UA 3SUMA 3X2KA 4JJOA 1HD5A 4JS7A 2BH0A 5GLYA 3SULA 3X2JA 3X2MA 4JP6A 4L48A 2PJJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SUJ A;  4FFT A;  4JCW A;  1L8F A;  3X2N A;  3X2L A;  3ENG A;  4FER A;  2ENG A;  2G6G A;  4ZM7 A;  4FG2 A;  2PI8 A;  2PIC A;  1N10 A;  3X2I A;  3X2G A;  5GM9 A;  2AE0 X;  3CZB A;  1BW3 A;  4ENG A;  4JP7 A;  5GLX A;  2PNW A;  3X2P A;  4AVR A;  2HCZ X;  3D30 A;  1OA9 A;  4FG4 A;  3X2H A;  1OA7 A;  2KQA A;  3SUK A;  1BW4 A;  3M3G A;  2G5D A;  2GAE A;  1WC2 A;  3X2O A;  5H4U A;  3SUM A;  3X2K A;  4JJO A;  1HD5 A;  4JS7 A;  2BH0 A;  5GLY A;  3SUL A;  3X2J A;  3X2M A;  4JP6 A;  4L48 A;  2PJJ A; 
#chains in the Genus database with same CATH topology
 2E2I A;  4AAY A;  5FTL A;  1I50 A;  2V45 A;  4FER A;  4C2M A;  1YLE A;  1AW8 B;  2PI8 A;  1TWA A;  4CRY G;  2PIC A;  1H0H A;  5C1B A;  4AYB A;  3HU3 A;  3IR7 A;  2WAQ A;  3CZB A;  3HKZ A;  1FDI A;  1PQH A;  2JA6 A;  2VPX A;  5FTN A;  1KQF A;  3GTG A;  1UHE A;  2V3V A;  1OA9 A;  1Y4Z A;  2NAP A;  2VPY A;  2KQA A;  4AZD A;  1SIW A;  1DMS A;  1DMR A;  4CRZ A;  2JIO A;  1K83 A;  3IR5 A;  4JS7 A;  5C18 A;  1R9T A;  1OGY A;  1I3Q A;  3X2M A;  2VPW A;  1Q16 A;  2Y0S A;  1Y1V A;  4AOK B;  1E61 A;  2VPZ A;  2YUJ A;  3SUJ A;  4JCW A;  1TWC A;  2A6H D;  5B6C A;  3CQZ A;  2CW0 D;  5EPP A;  2EEO B;  1Y5I A;  3QC8 A;  4KOD A;  2PJH B;  5GLF A;  1TWF A;  3X2G A;  2B63 A;  1G8K A;  1Y1W A;  1PQE A;  1BW3 A;  4JP7 A;  4CS0 A;  3HU1 A;  1TMO A;  1R7R A;  1OA7 A;  1SMY D;  3SUK A;  1CZ4 A;  1E60 A;  3M3G A;  4DMR A;  2G5D A;  1WC2 A;  2O5J D;  3X2O A;  5H4U A;  4GA5 A;  2A69 D;  1E5V A;  1HD5 A;  2PMZ A;  1PT0 A;  2BH0 A;  1S3S A;  3SUL A;  4L48 A;  5DYI A;  5DYG A;  2JIQ A;  4FFT A;  1VC3 B;  2NVY A;  1L8F A;  3X2L A;  3ENG A;  2ENG A;  3FKI A;  2NYA A;  4RV0 A;  1CR5 A;  1QDN A;  4FG2 A;  5FTM A;  2E2H A;  1N10 A;  2JIM A;  3X2I A;  1FDO A;  1EU1 A;  1TWG A;  3QQ8 A;  4KLN A;  2AE0 X;  5GM9 A;  2YU9 A;  2R93 A;  2E7Z A;  3X2P A;  2A6E D;  2HCZ X;  3ML1 A;  4AVR A;  1H5N A;  5FTJ A;  2A68 D;  3X2H A;  1WCM A;  2JIP A;  3GTP A;  3SUM A;  1WLF A;  4JJO A;  1UHD A;  1G8J A;  5FTK A;  3X2J A;  1TWH A;  1ZYR D;  1PYU B;  2C45 A;  4JP6 A;  4KDI A;  4D7Z B;  1YNN D;  2KI8 A;  2JIR A;  1YNJ D;  3HU2 A;  3DMR A;  1E32 A;  2R7Z A;  4GA6 A;  4NOH A;  3X2N A;  2BE5 D;  2NVX A;  3O5A A;  2JA7 A;  2G6G A;  3H0G A;  3GTL A;  5T5M D;  3IR6 A;  1CZ5 A;  1SFO A;  1E18 A;  2IV2 X;  4KO8 A;  4ZM7 A;  1QCS A;  1AA6 A;  2R92 A;  1PYQ A;  2DMR A;  3GTO A;  4QIW A;  4ENG A;  2JA5 A;  1PT1 A;  5GLX A;  2PNW A;  3D30 A;  4FG4 A;  1BW4 A;  3QQ7 A;  3CF2 A;  2GAE A;  3OUG A;  3GTM A;  1PQF A;  3GTJ A;  3QWZ A;  5T5I D;  1PPY A;  3X2K A;  3GTK A;  4AON B;  3GTQ A;  1KQG A;  1ZC1 A;  5GLY A;  3PLX B;  2VUM A;  2WB1 A;  3TIW A;  2PJJ A;  3TM7 B;  4KDL A;  1IW7 D;  1R27 A; 
#chains in the Genus database with same CATH homology
 3SUJ A;  4FFT A;  4JCW A;  1L8F A;  3X2N A;  3X2L A;  3ENG A;  4FER A;  2ENG A;  2G6G A;  4ZM7 A;  4FG2 A;  2PI8 A;  2PIC A;  1N10 A;  3X2I A;  3X2G A;  5GM9 A;  2AE0 X;  3CZB A;  1BW3 A;  4ENG A;  4JP7 A;  5GLX A;  2PNW A;  3X2P A;  4AVR A;  2HCZ X;  3D30 A;  1OA9 A;  4FG4 A;  3X2H A;  1OA7 A;  2KQA A;  3SUK A;  1BW4 A;  3M3G A;  2G5D A;  2GAE A;  1WC2 A;  3X2O A;  5H4U A;  3SUM A;  3X2K A;  4JJO A;  1HD5 A;  4JS7 A;  2BH0 A;  5GLY A;  3SUL A;  3X2J A;  3X2M A;  4JP6 A;  4L48 A;  2PJJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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