1L8FA

Structure of 20k-endoglucanase from melanocarpus albomyces at 1.8 a
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
207
structure length
207
Chain Sequence
ANGQSTRYWDCCKPSCGWRGKGPVNQPVYSCDANFQRIHDFDAVSGCEGGPAFSCADHSPWAINDNLSYGFAATALSGQTEESWCCACYALTFTSGPVAGKTMVVQSTSTGGDLGSNHFDLNIPGGGVGLFDGCTPQFGGLPGARYGGISSRQECDSFPEPLKPGCQWRFDWFQNADNPSFTFERVQCPEELVARTGCRRHDDGGFA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of 20K endoglucanase from Melanocarpus albomyces at 1.8 A resolution.
pubmed doi rcsb
molecule tags Hydrolase
molecule keywords Endoglucanase
total genus 69
structure length 207
sequence length 207
ec nomenclature ec 3.2.1.4: Cellulase.
pdb deposition date 2002-03-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02015 Glyco_hydro_45 Glycosyl hydrolase family 45
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 1l8fA00
4FG4A 1L8FA 2PICA 2G6GA 2PNWA 4JCWA 3SUMA 3X2IA 4AVRA 2KQAA 1N10A 3D30A 3X2PA 2ENGA 4ZM7A 4JJOA 4JP6A 4L48A 1BW4A 2BH0A 3SUJA 3X2NA 3X2KA 4ENGA 2G5DA 3SUKA 3ENGA 1WC2A 5H4UA 4FFTA 1HD5A 2AE0X 2HCZX 3CZBA 3X2HA 2GAEA 5GM9A 3SULA 3M3GA 2PI8A 3X2MA 1BW3A 5GLXA 5GLYA 1OA7A 1OA9A 4FERA 3X2OA 4JP7A 2PJJA 4JS7A 3X2JA 4FG2A 3X2GA 3X2LA
chains in the Genus database with same CATH superfamily
3GTPA 2PNWA 2CW0D 1PQFA 1TWGA 3GTOA 1Y4ZA 2WAQA 1G8KA 3SUMA 4CS0A 2R93A 2VPWA 3DMRA 3CF2A 2YUJA 4KDIA 3X2PA 1CR5A 2JIMA 4CRYG 1DMRA 2A69D 1BW4A 2BH0A 3QQ7A 3X2KA 2JIPA 5T5ID 2G5DA 2E2HA 1FDOA 2KI8A 3H0GA 5H4UA 4AZDA 1EU1A 1OGYA 3GTGA 2VUMA 3TM7B 3OUGA 1PQHA 3CQZA 4C2MA 2A6HD 1YNND 3TIWA 1UHEA 2VPYA 5GLXA 3GTMA 2JA7A 3X2OA 2JA5A 2PJJA 4JS7A 3HU1A 2DMRA 2EEOB 1IW7D 4FG4A 2G6GA 1H5NA 2V45A 4JCWA 5FTNA 5FTKA 1SIWA 5EPPA 3X2IA 1AA6A 2NVYA 1H0HA 1N10A 1Q16A 2BE5D 2JIQA 2IV2X 3ML1A 2JIRA 4JJOA 1G8JA 2A6ED 4L48A 3HKZA 2NVXA 1WC2A 3QC8A 4QIWA 5FTLA 1VC3B 5T5MD 3GTLA 2HCZX 3IR5A 2NAPA 2PMZA 1K83A 2WB1A 1WCMA 1BW3A 1R9TA 5FTJA 1TWAA 1Y1WA 4CRZA 3X2JA 2C45A 1PT1A 1PYQA 3QQ8A 4FG2A 1UHDA 1DMSA 2E2IA 3X2LA 1PT0A 1KQGA 2PJHB 2VPXA 1QCSA 1I50A 5DYIA 4AVRA 2E7ZA 2KQAA 1ZC1A 3IR7A 1E18A 3O5AA 1Y1VA 1QDNA 4AOKB 1SMYD 3SUJA 5C1BA 1TWFA 4ENGA 4DMRA 4GA5A 4D7ZB 3GTQA 1E5VA 1AW8B 4FFTA 2VPZA 3CZBA 1S3SA 3X2HA 1I3QA 2O5JD 4KODA 2GAEA 5GM9A 5C18A 5B6CA 2PI8A 3X2MA 2B63A 1PQEA 1OA7A 2NYAA 1OA9A 1R7RA 2Y0SA 4FERA 5GLFA 2A68D 4AYBA 3HU2A 1CZ4A 3HU3A 4AAYA 2V3VA 3GTJA 1L8FA 1TWHA 2PICA 1Y5IA 5FTMA 2JIOA 3D30A 1PYUB 1YLEA 2ENGA 2R92A 4ZM7A 1PPYA 1TWCA 3PLXB 4JP6A 3GTKA 4KLNA 1CZ5A 3X2NA 3SUKA 4NOHA 3ENGA 1E32A 4AONB 1YNJD 1KQFA 3FKIA 3IR6A 4KDLA 1HD5A 2AE0X 2YU9A 1SFOA 4GA6A 1WLFA 4KO8A 3SULA 3M3GA 4RV0A 2JA6A 5DYGA 1TMOA 1ZYRD 5GLYA 1E60A 4JP7A 3QWZA 1FDIA 1R27A 3X2GA 1E61A 2R7ZA
chains in the Genus database with same CATH topology
4FG4A 1L8FA 2PICA 2G6GA 2PNWA 4JCWA 3SUMA 3X2IA 4AVRA 2KQAA 1N10A 3D30A 3X2PA 2ENGA 4ZM7A 4JJOA 4JP6A 4L48A 1BW4A 2BH0A 3SUJA 3X2NA 3X2KA 4ENGA 2G5DA 3SUKA 3ENGA 1WC2A 5H4UA 4FFTA 1HD5A 2AE0X 2HCZX 3CZBA 3X2HA 2GAEA 5GM9A 3SULA 3M3GA 2PI8A 3X2MA 1BW3A 5GLXA 5GLYA 1OA7A 1OA9A 4FERA 3X2OA 4JP7A 2PJJA 4JS7A 3X2JA 4FG2A 3X2GA 3X2LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FG4 A;  1L8F A;  2PIC A;  2G6G A;  2PNW A;  4JCW A;  3SUM A;  3X2I A;  4AVR A;  2KQA A;  1N10 A;  3D30 A;  3X2P A;  2ENG A;  4ZM7 A;  4JJO A;  4JP6 A;  4L48 A;  1BW4 A;  2BH0 A;  3SUJ A;  3X2N A;  3X2K A;  4ENG A;  2G5D A;  3SUK A;  3ENG A;  1WC2 A;  5H4U A;  4FFT A;  1HD5 A;  2AE0 X;  2HCZ X;  3CZB A;  3X2H A;  2GAE A;  5GM9 A;  3SUL A;  3M3G A;  2PI8 A;  3X2M A;  1BW3 A;  5GLX A;  5GLY A;  1OA7 A;  1OA9 A;  4FER A;  3X2O A;  4JP7 A;  2PJJ A;  4JS7 A;  3X2J A;  4FG2 A;  3X2G A;  3X2L A; 
#chains in the Genus database with same CATH topology
 3GTP A;  2PNW A;  2CW0 D;  1PQF A;  1TWG A;  3GTO A;  1Y4Z A;  2WAQ A;  1G8K A;  3SUM A;  4CS0 A;  2R93 A;  2VPW A;  3DMR A;  3CF2 A;  2YUJ A;  4KDI A;  3X2P A;  1CR5 A;  2JIM A;  4CRY G;  1DMR A;  2A69 D;  1BW4 A;  2BH0 A;  3QQ7 A;  3X2K A;  2JIP A;  5T5I D;  2G5D A;  2E2H A;  1FDO A;  2KI8 A;  3H0G A;  5H4U A;  4AZD A;  1EU1 A;  1OGY A;  3GTG A;  2VUM A;  3TM7 B;  3OUG A;  1PQH A;  3CQZ A;  4C2M A;  2A6H D;  1YNN D;  3TIW A;  1UHE A;  2VPY A;  5GLX A;  3GTM A;  2JA7 A;  3X2O A;  2JA5 A;  2PJJ A;  4JS7 A;  3HU1 A;  2DMR A;  2EEO B;  1IW7 D;  4FG4 A;  2G6G A;  1H5N A;  2V45 A;  4JCW A;  5FTN A;  5FTK A;  1SIW A;  5EPP A;  3X2I A;  1AA6 A;  2NVY A;  1H0H A;  1N10 A;  1Q16 A;  2BE5 D;  2JIQ A;  2IV2 X;  3ML1 A;  2JIR A;  4JJO A;  1G8J A;  2A6E D;  4L48 A;  3HKZ A;  2NVX A;  1WC2 A;  3QC8 A;  4QIW A;  5FTL A;  1VC3 B;  5T5M D;  3GTL A;  2HCZ X;  3IR5 A;  2NAP A;  2PMZ A;  1K83 A;  2WB1 A;  1WCM A;  1BW3 A;  1R9T A;  5FTJ A;  1TWA A;  1Y1W A;  4CRZ A;  3X2J A;  2C45 A;  1PT1 A;  1PYQ A;  3QQ8 A;  4FG2 A;  1UHD A;  1DMS A;  2E2I A;  3X2L A;  1PT0 A;  1KQG A;  2PJH B;  2VPX A;  1QCS A;  1I50 A;  5DYI A;  4AVR A;  2E7Z A;  2KQA A;  1ZC1 A;  3IR7 A;  1E18 A;  3O5A A;  1Y1V A;  1QDN A;  4AOK B;  1SMY D;  3SUJ A;  5C1B A;  1TWF A;  4ENG A;  4DMR A;  4GA5 A;  4D7Z B;  3GTQ A;  1E5V A;  1AW8 B;  4FFT A;  2VPZ A;  3CZB A;  1S3S A;  3X2H A;  1I3Q A;  2O5J D;  4KOD A;  2GAE A;  5GM9 A;  5C18 A;  5B6C A;  2PI8 A;  3X2M A;  2B63 A;  1PQE A;  1OA7 A;  2NYA A;  1OA9 A;  1R7R A;  2Y0S A;  4FER A;  5GLF A;  2A68 D;  4AYB A;  3HU2 A;  1CZ4 A;  3HU3 A;  4AAY A;  2V3V A;  3GTJ A;  1L8F A;  1TWH A;  2PIC A;  1Y5I A;  5FTM A;  2JIO A;  3D30 A;  1PYU B;  1YLE A;  2ENG A;  2R92 A;  4ZM7 A;  1PPY A;  1TWC A;  3PLX B;  4JP6 A;  3GTK A;  4KLN A;  1CZ5 A;  3X2N A;  3SUK A;  4NOH A;  3ENG A;  1E32 A;  4AON B;  1YNJ D;  1KQF A;  3FKI A;  3IR6 A;  4KDL A;  1HD5 A;  2AE0 X;  2YU9 A;  1SFO A;  4GA6 A;  1WLF A;  4KO8 A;  3SUL A;  3M3G A;  4RV0 A;  2JA6 A;  5DYG A;  1TMO A;  1ZYR D;  5GLY A;  1E60 A;  4JP7 A;  3QWZ A;  1FDI A;  1R27 A;  3X2G A;  1E61 A;  2R7Z A; 
#chains in the Genus database with same CATH homology
 4FG4 A;  1L8F A;  2PIC A;  2G6G A;  2PNW A;  4JCW A;  3SUM A;  3X2I A;  4AVR A;  2KQA A;  1N10 A;  3D30 A;  3X2P A;  2ENG A;  4ZM7 A;  4JJO A;  4JP6 A;  4L48 A;  1BW4 A;  2BH0 A;  3SUJ A;  3X2N A;  3X2K A;  4ENG A;  2G5D A;  3SUK A;  3ENG A;  1WC2 A;  5H4U A;  4FFT A;  1HD5 A;  2AE0 X;  2HCZ X;  3CZB A;  3X2H A;  2GAE A;  5GM9 A;  3SUL A;  3M3G A;  2PI8 A;  3X2M A;  1BW3 A;  5GLX A;  5GLY A;  1OA7 A;  1OA9 A;  4FER A;  3X2O A;  4JP7 A;  2PJJ A;  4JS7 A;  3X2J A;  4FG2 A;  3X2G A;  3X2L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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