1PQFA

Glycine 24 to serine mutation of aspartate decarboxylase
Total Genus 35

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
127
structure length
126
Chain Sequence
PRGSMIRTMLQGKLHRVKVTHADLHYESSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTAKAIPV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (2-15)TII2 (39-42)S2 (17-19)S9 (113-115)TI1 (19-22)S3 (25-29)TIV3 (76-80)3H1 (73-76)AH1 (30-36)S5 (54-62)S4 (42-48)S7 (83-94)TI2 (49-52)TII4 (80-83)S6 (69-72)S8 (104-109)TI3 (118-121)TIV4 (109-112)TIV2 (48-51)AH2 (95-99)TII3 (63-66)Updating...
connected with : NaN
molecule tags Lyase
source organism Escherichia coli
publication title Structural constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
molecule keywords Aspartate 1-decarboxylase
total genus 35
structure length 126
sequence length 127
chains with identical sequence B
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-06-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1pqfA00
1IW7D 5FTNA 2VUMA 2NYAA 3QWZA 2R7ZA 2C45A 2IV2X 3H0GA 1QCSA 1I50A 3HU2A 3FKIA 4KODA 1TMOA 1DMSA 3DMRA 4KLNA 1OGYA 5FTMA 3IR5A 2JIQA 2WAQA 1YLEA 1TWHA 1Y4ZA 2PMZA 5GLFA 1E5VA 3PLXB 1CZ5A 5FTLA 1QDNA 2JIMA 2R92A 5FTKA 3GTGA 1FDIA 1DMRA 1TWAA 4AYBA 2VPWA 4GA6A 2Y0SA 3GTLA 4AONB 2YU9A 2JA6A 2PJHB 1VC3B 2R93A 1G8KA 3TIWA 1E60A 4KDLA 1AA6A 1EU1A 3GTJA 1Y5IA 5C1BA 3QC8A 1WLFA 3OUGA 1KQFA 1PYUB 1PT0A 2JIRA 5T5MD 1KQGA 4RV0A 1Y1VA 4AZDA 1TWGA 5C18A 3HU1A 1UHDA 5FTJA 4AOKB 2JA5A 3O5AA 2V45A 1WCMA 1PPYA 1R7RA 1UHEA 4C2MA 4CRZA 1CR5A 2JA7A 2V3VA 1H5NA 1E18A 4DMRA 1PQHA 2VPYA 1G8JA 1TWFA 2NVYA 5DYGA 4KDIA 4D7ZB 2WB1A 3QQ8A 1I3QA 5DYIA 1E61A 2JIOA 4GA5A 1SFOA 3CQZA 4QIWA 1PQFA 4CRYG 2E7ZA 1H0HA 3GTPA 5B6CA 3GTKA 3IR6A 1PYQA 3HU3A 5T5ID 1PT1A 1R9TA 1K83A 2B63A 2E2HA 3CF2A 3IR7A 3TM7B 1CZ4A 3ML1A 1AW8B 2NAPA 1TWCA 2JIPA 1Q16A 1S3SA 2EEOB 5EPPA 1FDOA 1E32A 1PQEA 3GTOA 2VPZA 1SIWA 1R27A 3GTQA 2NVXA 3QQ7A 3GTMA 2E2IA 4AAYA 4CS0A 2DMRA 2VPXA 3HKZA 4KO8A 2KI8A 1Y1WA
chains in the Genus database with same CATH superfamily
1IW7D 2G5DA 5FTNA 2VUMA 2NYAA 3QWZA 2R7ZA 1OA7A 2C45A 2G6GA 2PI8A 2IV2X 3H0GA 1QCSA 1I50A 3HU2A 3FKIA 4KODA 1TMOA 4NOHA 1DMSA 3DMRA 4KLNA 4L48A 3X2PA 1OGYA 5FTMA 4AVRA 3IR5A 2JIQA 3X2HA 2WAQA 1YLEA 1TWHA 1Y4ZA 2PMZA 5GLFA 1E5VA 3PLXB 1CZ5A 5FTLA 2KQAA 1QDNA 2JIMA 3SULA 2R92A 4JJOA 1BW3A 5FTKA 1HD5A 1FDIA 3GTGA 1DMRA 1TWAA 1N10A 4AYBA 1OA9A 2VPWA 3X2KA 4JS7A 4GA6A 2Y0SA 4FG2A 3GTLA 4FERA 4AONB 2YU9A 2JA6A 2PJHB 1VC3B 2R93A 1G8KA 3TIWA 1E60A 4KDLA 2BH0A 1AA6A 1EU1A 3SUJA 2GAEA 3X2LA 3GTJA 4JCWA 3X2MA 1Y5IA 5C1BA 4ZM7A 5GM9A 3QC8A 1WLFA 3OUGA 4FG4A 1KQFA 1PYUB 1PT0A 2JIRA 5T5MD 1KQGA 2PJJA 2A6HD 2O5JD 1WC2A 4RV0A 1Y1VA 4AZDA 1TWGA 2PNWA 3HU1A 5C18A 1UHDA 5FTJA 4AOKB 2JA5A 3O5AA 2V45A 1SMYD 1WCMA 5GLYA 4ENGA 1PPYA 1R7RA 1UHEA 4C2MA 4FFTA 4CRZA 1CR5A 2JA7A 1YNJD 2V3VA 1H5NA 3CZBA 1E18A 4DMRA 1PQHA 2VPYA 3SUKA 3X2OA 2YUJA 3X2IA 1G8JA 1TWFA 2NVYA 5DYGA 3ENGA 4KDIA 1ZYRD 2WB1A 3QQ8A 4D7ZB 1I3QA 2BE5D 5DYIA 1E61A 2JIOA 4GA5A 1SFOA 4JP6A 2PICA 3CQZA 5GLXA 3X2NA 4QIWA 1PQFA 3X2JA 4CRYG 2E7ZA 1H0HA 3GTPA 3D30A 5B6CA 3GTKA 3IR6A 1PYQA 3HU3A 5T5ID 1PT1A 2CW0D 1R9TA 1K83A 1BW4A 3M3GA 2B63A 2E2HA 3CF2A 3IR7A 3TM7B 1CZ4A 3SUMA 2AE0X 1AW8B 2NAPA 1TWCA 3ML1A 2JIPA 1Q16A 1S3SA 2EEOB 5EPPA 2HCZX 5H4UA 1FDOA 1E32A 1L8FA 1PQEA 3GTOA 4JP7A 2VPZA 1ZC1A 1SIWA 1R27A 2ENGA 3GTQA 2NVXA 3QQ7A 2A6ED 3GTMA 1YNND 4AAYA 3X2GA 4CS0A 2A68D 2E2IA 2A69D 2DMRA 2VPXA 3HKZA 4KO8A 2KI8A 1Y1WA
chains in the Genus database with same CATH topology
1IW7D 2G5DA 5FTNA 2VUMA 2NYAA 3QWZA 2R7ZA 2C45A 2G6GA 2PI8A 2IV2X 3H0GA 1QCSA 1I50A 3HU2A 3FKIA 4KODA 1TMOA 4NOHA 1DMSA 3DMRA 4KLNA 1OGYA 5FTMA 3IR5A 2JIQA 2WAQA 1YLEA 1TWHA 1Y4ZA 2PMZA 5GLFA 1E5VA 3PLXB 1CZ5A 5FTLA 1QDNA 2JIMA 2R92A 5FTKA 3GTGA 1FDIA 1DMRA 1TWAA 4AYBA 2VPWA 4GA6A 2Y0SA 3GTLA 4AONB 2YU9A 2JA6A 2PJHB 1VC3B 2R93A 1G8KA 3TIWA 1E60A 4KDLA 1AA6A 1EU1A 3GTJA 2GAEA 1Y5IA 5C1BA 3QC8A 1WLFA 3OUGA 1KQFA 1PYUB 1PT0A 2JIRA 5T5MD 1KQGA 2PJJA 2A6HD 2O5JD 4RV0A 1Y1VA 4AZDA 1TWGA 2PNWA 3HU1A 5C18A 1UHDA 5FTJA 4AOKB 2JA5A 3O5AA 2V45A 1SMYD 1WCMA 1PPYA 1R7RA 1UHEA 4C2MA 4CRZA 1CR5A 2JA7A 1YNJD 2V3VA 1H5NA 3CZBA 1E18A 4DMRA 1PQHA 2VPYA 2YUJA 1G8JA 1TWFA 2NVYA 5DYGA 4KDIA 1ZYRD 2WB1A 3QQ8A 4D7ZB 1I3QA 2BE5D 5DYIA 1E61A 2JIOA 4GA5A 1SFOA 2PICA 3CQZA 4QIWA 1PQFA 4CRYG 2E7ZA 1H0HA 3GTPA 5B6CA 3GTKA 3IR6A 1PYQA 3HU3A 5T5ID 1PT1A 2CW0D 1R9TA 1K83A 2B63A 2E2HA 3CF2A 3IR7A 3TM7B 1CZ4A 2AE0X 1AW8B 2NAPA 1TWCA 3ML1A 2JIPA 1Q16A 1S3SA 2EEOB 5EPPA 1FDOA 1E32A 1PQEA 3GTOA 2VPZA 1ZC1A 1SIWA 1R27A 3GTQA 2NVXA 3QQ7A 2A6ED 3GTMA 1YNND 4AAYA 2E2IA 4CS0A 2A68D 2A69D 2DMRA 2VPXA 3HKZA 4KO8A 2KI8A 1Y1WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IW7 D;  5FTN A;  2VUM A;  2NYA A;  3QWZ A;  2R7Z A;  2C45 A;  2IV2 X;  3H0G A;  1QCS A;  1I50 A;  3HU2 A;  3FKI A;  4KOD A;  1TMO A;  1DMS A;  3DMR A;  4KLN A;  1OGY A;  5FTM A;  3IR5 A;  2JIQ A;  2WAQ A;  1YLE A;  1TWH A;  1Y4Z A;  2PMZ A;  5GLF A;  1E5V A;  3PLX B;  1CZ5 A;  5FTL A;  1QDN A;  2JIM A;  2R92 A;  5FTK A;  3GTG A;  1FDI A;  1DMR A;  1TWA A;  4AYB A;  2VPW A;  4GA6 A;  2Y0S A;  3GTL A;  4AON B;  2YU9 A;  2JA6 A;  2PJH B;  1VC3 B;  2R93 A;  1G8K A;  3TIW A;  1E60 A;  4KDL A;  1AA6 A;  1EU1 A;  3GTJ A;  1Y5I A;  5C1B A;  3QC8 A;  1WLF A;  3OUG A;  1KQF A;  1PYU B;  1PT0 A;  2JIR A;  5T5M D;  1KQG A;  4RV0 A;  1Y1V A;  4AZD A;  1TWG A;  5C18 A;  3HU1 A;  1UHD A;  5FTJ A;  4AOK B;  2JA5 A;  3O5A A;  2V45 A;  1WCM A;  1PPY A;  1R7R A;  1UHE A;  4C2M A;  4CRZ A;  1CR5 A;  2JA7 A;  2V3V A;  1H5N A;  1E18 A;  4DMR A;  1PQH A;  2VPY A;  1G8J A;  1TWF A;  2NVY A;  5DYG A;  4KDI A;  4D7Z B;  2WB1 A;  3QQ8 A;  1I3Q A;  5DYI A;  1E61 A;  2JIO A;  4GA5 A;  1SFO A;  3CQZ A;  4QIW A;  1PQF A;  4CRY G;  2E7Z A;  1H0H A;  3GTP A;  5B6C A;  3GTK A;  3IR6 A;  1PYQ A;  3HU3 A;  5T5I D;  1PT1 A;  1R9T A;  1K83 A;  2B63 A;  2E2H A;  3CF2 A;  3IR7 A;  3TM7 B;  1CZ4 A;  3ML1 A;  1AW8 B;  2NAP A;  1TWC A;  2JIP A;  1Q16 A;  1S3S A;  2EEO B;  5EPP A;  1FDO A;  1E32 A;  1PQE A;  3GTO A;  2VPZ A;  1SIW A;  1R27 A;  3GTQ A;  2NVX A;  3QQ7 A;  3GTM A;  2E2I A;  4AAY A;  4CS0 A;  2DMR A;  2VPX A;  3HKZ A;  4KO8 A;  2KI8 A;  1Y1W A; 
#chains in the Genus database with same CATH topology
 1IW7 D;  2G5D A;  5FTN A;  2VUM A;  2NYA A;  3QWZ A;  2R7Z A;  1OA7 A;  2C45 A;  2G6G A;  2PI8 A;  2IV2 X;  3H0G A;  1QCS A;  1I50 A;  3HU2 A;  3FKI A;  4KOD A;  1TMO A;  4NOH A;  1DMS A;  3DMR A;  4KLN A;  4L48 A;  3X2P A;  1OGY A;  5FTM A;  4AVR A;  3IR5 A;  2JIQ A;  3X2H A;  2WAQ A;  1YLE A;  1TWH A;  1Y4Z A;  2PMZ A;  5GLF A;  1E5V A;  3PLX B;  1CZ5 A;  5FTL A;  2KQA A;  1QDN A;  2JIM A;  3SUL A;  2R92 A;  4JJO A;  1BW3 A;  5FTK A;  1HD5 A;  1FDI A;  3GTG A;  1DMR A;  1TWA A;  1N10 A;  4AYB A;  1OA9 A;  2VPW A;  3X2K A;  4JS7 A;  4GA6 A;  2Y0S A;  4FG2 A;  3GTL A;  4FER A;  4AON B;  2YU9 A;  2JA6 A;  2PJH B;  1VC3 B;  2R93 A;  1G8K A;  3TIW A;  1E60 A;  4KDL A;  2BH0 A;  1AA6 A;  1EU1 A;  3SUJ A;  2GAE A;  3X2L A;  3GTJ A;  4JCW A;  3X2M A;  1Y5I A;  5C1B A;  4ZM7 A;  5GM9 A;  3QC8 A;  1WLF A;  3OUG A;  4FG4 A;  1KQF A;  1PYU B;  1PT0 A;  2JIR A;  5T5M D;  1KQG A;  2PJJ A;  2A6H D;  2O5J D;  1WC2 A;  4RV0 A;  1Y1V A;  4AZD A;  1TWG A;  2PNW A;  3HU1 A;  5C18 A;  1UHD A;  5FTJ A;  4AOK B;  2JA5 A;  3O5A A;  2V45 A;  1SMY D;  1WCM A;  5GLY A;  4ENG A;  1PPY A;  1R7R A;  1UHE A;  4C2M A;  4FFT A;  4CRZ A;  1CR5 A;  2JA7 A;  1YNJ D;  2V3V A;  1H5N A;  3CZB A;  1E18 A;  4DMR A;  1PQH A;  2VPY A;  3SUK A;  3X2O A;  2YUJ A;  3X2I A;  1G8J A;  1TWF A;  2NVY A;  5DYG A;  3ENG A;  4KDI A;  1ZYR D;  2WB1 A;  3QQ8 A;  4D7Z B;  1I3Q A;  2BE5 D;  5DYI A;  1E61 A;  2JIO A;  4GA5 A;  1SFO A;  4JP6 A;  2PIC A;  3CQZ A;  5GLX A;  3X2N A;  4QIW A;  1PQF A;  3X2J A;  4CRY G;  2E7Z A;  1H0H A;  3GTP A;  3D30 A;  5B6C A;  3GTK A;  3IR6 A;  1PYQ A;  3HU3 A;  5T5I D;  1PT1 A;  2CW0 D;  1R9T A;  1K83 A;  1BW4 A;  3M3G A;  2B63 A;  2E2H A;  3CF2 A;  3IR7 A;  3TM7 B;  1CZ4 A;  3SUM A;  2AE0 X;  1AW8 B;  2NAP A;  1TWC A;  3ML1 A;  2JIP A;  1Q16 A;  1S3S A;  2EEO B;  5EPP A;  2HCZ X;  5H4U A;  1FDO A;  1E32 A;  1L8F A;  1PQE A;  3GTO A;  4JP7 A;  2VPZ A;  1ZC1 A;  1SIW A;  1R27 A;  2ENG A;  3GTQ A;  2NVX A;  3QQ7 A;  2A6E D;  3GTM A;  1YNN D;  4AAY A;  3X2G A;  4CS0 A;  2A68 D;  2E2I A;  2A69 D;  2DMR A;  2VPX A;  3HKZ A;  4KO8 A;  2KI8 A;  1Y1W A; 
#chains in the Genus database with same CATH homology
 1IW7 D;  2G5D A;  5FTN A;  2VUM A;  2NYA A;  3QWZ A;  2R7Z A;  2C45 A;  2G6G A;  2PI8 A;  2IV2 X;  3H0G A;  1QCS A;  1I50 A;  3HU2 A;  3FKI A;  4KOD A;  1TMO A;  4NOH A;  1DMS A;  3DMR A;  4KLN A;  1OGY A;  5FTM A;  3IR5 A;  2JIQ A;  2WAQ A;  1YLE A;  1TWH A;  1Y4Z A;  2PMZ A;  5GLF A;  1E5V A;  3PLX B;  1CZ5 A;  5FTL A;  1QDN A;  2JIM A;  2R92 A;  5FTK A;  3GTG A;  1FDI A;  1DMR A;  1TWA A;  4AYB A;  2VPW A;  4GA6 A;  2Y0S A;  3GTL A;  4AON B;  2YU9 A;  2JA6 A;  2PJH B;  1VC3 B;  2R93 A;  1G8K A;  3TIW A;  1E60 A;  4KDL A;  1AA6 A;  1EU1 A;  3GTJ A;  2GAE A;  1Y5I A;  5C1B A;  3QC8 A;  1WLF A;  3OUG A;  1KQF A;  1PYU B;  1PT0 A;  2JIR A;  5T5M D;  1KQG A;  2PJJ A;  2A6H D;  2O5J D;  4RV0 A;  1Y1V A;  4AZD A;  1TWG A;  2PNW A;  3HU1 A;  5C18 A;  1UHD A;  5FTJ A;  4AOK B;  2JA5 A;  3O5A A;  2V45 A;  1SMY D;  1WCM A;  1PPY A;  1R7R A;  1UHE A;  4C2M A;  4CRZ A;  1CR5 A;  2JA7 A;  1YNJ D;  2V3V A;  1H5N A;  3CZB A;  1E18 A;  4DMR A;  1PQH A;  2VPY A;  2YUJ A;  1G8J A;  1TWF A;  2NVY A;  5DYG A;  4KDI A;  1ZYR D;  2WB1 A;  3QQ8 A;  4D7Z B;  1I3Q A;  2BE5 D;  5DYI A;  1E61 A;  2JIO A;  4GA5 A;  1SFO A;  2PIC A;  3CQZ A;  4QIW A;  1PQF A;  4CRY G;  2E7Z A;  1H0H A;  3GTP A;  5B6C A;  3GTK A;  3IR6 A;  1PYQ A;  3HU3 A;  5T5I D;  1PT1 A;  2CW0 D;  1R9T A;  1K83 A;  2B63 A;  2E2H A;  3CF2 A;  3IR7 A;  3TM7 B;  1CZ4 A;  2AE0 X;  1AW8 B;  2NAP A;  1TWC A;  3ML1 A;  2JIP A;  1Q16 A;  1S3S A;  2EEO B;  5EPP A;  1FDO A;  1E32 A;  1PQE A;  3GTO A;  2VPZ A;  1ZC1 A;  1SIW A;  1R27 A;  3GTQ A;  2NVX A;  3QQ7 A;  2A6E D;  3GTM A;  1YNN D;  4AAY A;  2E2I A;  4CS0 A;  2A68 D;  2A69 D;  2DMR A;  2VPX A;  3HKZ A;  4KO8 A;  2KI8 A;  1Y1W A; 
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