1PQHA

Serine 25 to threonine mutation of aspartate decarboxylase
Total Genus 33

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
119
structure length
118
Chain Sequence
RGSMIRTMLQGKLHRVKVTHADLHYEGTCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (2-15)TII1 (39-42)TIV5 (109-112)S2 (17-19)S9 (113-114)S6 (69-72)TIV2 (19-22)3H1 (73-76)S3 (27-29)TII2 (63-66)AH1 (30-36)S4 (42-48)S7 (83-94)TI2 (49-52)S5 (54-62)TIV4 (76-80)TII3 (80-83)S8 (104-109)TIV3 (48-51)AH2 (95-99)Updating...
connected with : NaN
molecule tags Lyase
source organism Escherichia coli
publication title Structural constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
molecule keywords Aspartate 1-decarboxylase
total genus 33
structure length 118
sequence length 119
chains with identical sequence B
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-06-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1pqhA00
2NAPA 2NVYA 4KO8A 1AW8B 5C1BA 1R9TA 5FTMA 1Q16A 1E60A 1WLFA 1QCSA 5DYIA 2JA5A 5C18A 3GTKA 3IR7A 1Y1WA 4AAYA 2R93A 2WAQA 2KI8A 2PMZA 1UHDA 2VUMA 3IR6A 1PT1A 5FTLA 3HKZA 1Y5IA 1TWCA 1E32A 1PT0A 2JA7A 1IW7D 5T5MD 2E2IA 1UHEA 1SFOA 5FTKA 1TWGA 3GTMA 1TMOA 1DMSA 2E7ZA 1E5VA 3QWZA 1H5NA 4GA6A 3DMRA 1K83A 1R27A 2YU9A 2JIPA 3HU2A 3IR5A 4AYBA 3HU1A 1CZ5A 2WB1A 4AOKB 4AONB 2R92A 4QIWA 1PQHA 1Y4ZA 1CR5A 3O5AA 1SIWA 3FKIA 1PQEA 1TWHA 4CRYG 1I3QA 4AZDA 2DMRA 4DMRA 4KDIA 2C45A 1YLEA 3TM7B 3CF2A 1PYUB 2EEOB 5T5ID 4CRZA 1E18A 3QQ7A 3GTJA 2PJHB 4KDLA 2JIRA 2VPWA 2VPYA 3ML1A 5GLFA 1KQFA 2VPZA 5EPPA 3GTLA 1VC3B 1PYQA 4CS0A 2R7ZA 3HU3A 1OGYA 3OUGA 3PLXB 1TWFA 1R7RA 5B6CA 2E2HA 5FTJA 1PQFA 3H0GA 3GTQA 1DMRA 3QQ8A 3GTPA 2JIQA 1CZ4A 5DYGA 2JIOA 3QC8A 2JIMA 1KQGA 1E61A 1I50A 1PPYA 2V45A 4RV0A 1G8JA 4KODA 4D7ZB 2IV2X 2B63A 1S3SA 1Y1VA 2V3VA 3CQZA 1AA6A 3GTOA 1G8KA 2JA6A 4GA5A 3TIWA 2NYAA 1QDNA 4C2MA 1FDOA 5FTNA 1EU1A 2VPXA 1H0HA 1FDIA 1WCMA 3GTGA 1TWAA 4KLNA 2Y0SA 2NVXA
chains in the Genus database with same CATH superfamily
4FERA 2BH0A 2NAPA 2NVYA 4KO8A 2PI8A 1AW8B 2G5DA 5C1BA 1R9TA 5FTMA 2HCZX 2KQAA 4ENGA 1Q16A 1E60A 2PICA 1WLFA 1QCSA 5DYIA 2JA5A 4L48A 5C18A 3GTKA 3IR7A 1Y1WA 3X2GA 4AAYA 2R93A 2WAQA 2O5JD 2KI8A 2PMZA 1UHDA 2VUMA 3IR6A 1PT1A 5FTLA 3HKZA 2AE0X 1Y5IA 1TWCA 1E32A 1PT0A 2JA7A 1IW7D 5T5MD 2E2IA 1UHEA 1SFOA 5FTKA 1TWGA 2ENGA 3GTMA 4JP7A 1WC2A 1TMOA 1DMSA 1ZC1A 3X2KA 2E7ZA 1E5VA 3QWZA 1H5NA 4GA6A 3DMRA 2PNWA 1K83A 1R27A 2YU9A 2JIPA 3HU2A 3IR5A 3X2PA 1HD5A 3SUMA 3HU1A 4AYBA 1BW4A 1CZ5A 2WB1A 4AOKB 4AONB 2R92A 4QIWA 1PQHA 1Y4ZA 1CR5A 3O5AA 1SIWA 3X2JA 3FKIA 3SUKA 4FG4A 2PJJA 3M3GA 2A69D 4AVRA 1PQEA 1TWHA 3X2HA 4CRYG 1I3QA 5GLXA 4AZDA 4JCWA 3X2IA 2DMRA 4DMRA 4KDIA 2C45A 1YLEA 3ENGA 3TM7B 3CF2A 1PYUB 1L8FA 2EEOB 5T5ID 3D30A 4CRZA 1E18A 4NOHA 3QQ7A 3GTJA 2PJHB 2YUJA 4KDLA 2JIRA 2VPWA 2VPYA 5GM9A 3ML1A 5GLFA 1KQFA 2CW0D 2VPZA 5EPPA 4FFTA 3GTLA 2A68D 4JS7A 1VC3B 1PYQA 1ZYRD 3CZBA 4CS0A 1SMYD 1YNND 3HU3A 2R7ZA 1OGYA 3OUGA 3PLXB 3X2MA 1TWFA 1R7RA 5B6CA 3X2NA 2E2HA 5FTJA 1BW3A 1PQFA 3H0GA 5H4UA 3GTQA 1DMRA 1YNJD 4FG2A 3QQ8A 1N10A 2G6GA 2JIQA 3GTPA 1CZ4A 5DYGA 2JIOA 3QC8A 1OA9A 2JIMA 4JP6A 4JJOA 1KQGA 1E61A 1I50A 1PPYA 2V45A 4RV0A 1G8JA 4KODA 4D7ZB 2GAEA 3SUJA 3X2LA 4ZM7A 2IV2X 2B63A 1S3SA 1Y1VA 2V3VA 2BE5D 1OA7A 3CQZA 5GLYA 1AA6A 1G8KA 3GTOA 4GA5A 2A6ED 2NYAA 3TIWA 2JA6A 1QDNA 4C2MA 1FDOA 5FTNA 1EU1A 2VPXA 3X2OA 2A6HD 1H0HA 1FDIA 1WCMA 3GTGA 1TWAA 4KLNA 3SULA 2Y0SA 2NVXA
chains in the Genus database with same CATH topology
2NAPA 2NVYA 4KO8A 2PI8A 1AW8B 2G5DA 5C1BA 1R9TA 5FTMA 1Q16A 1E60A 2PICA 1WLFA 1QCSA 5DYIA 2JA5A 5C18A 3GTKA 3IR7A 1Y1WA 4AAYA 2R93A 2WAQA 2O5JD 2KI8A 2PMZA 1UHDA 2VUMA 3IR6A 1PT1A 5FTLA 3HKZA 2AE0X 1Y5IA 1TWCA 1E32A 1PT0A 2JA7A 1IW7D 5T5MD 2E2IA 1UHEA 1SFOA 5FTKA 1TWGA 3GTMA 1TMOA 1DMSA 1ZC1A 2E7ZA 1E5VA 3QWZA 1H5NA 4GA6A 3DMRA 2PNWA 1K83A 1R27A 2YU9A 2JIPA 3HU2A 3IR5A 4AYBA 3HU1A 1CZ5A 2WB1A 4AOKB 4AONB 2R92A 4QIWA 1PQHA 1Y4ZA 1CR5A 3O5AA 1SIWA 3FKIA 2PJJA 2A69D 1PQEA 1TWHA 4CRYG 1I3QA 4AZDA 2DMRA 4DMRA 4KDIA 2C45A 1YLEA 3TM7B 3CF2A 1PYUB 2EEOB 5T5ID 4CRZA 1E18A 4NOHA 3QQ7A 3GTJA 2PJHB 2YUJA 4KDLA 2JIRA 2VPWA 2VPYA 3ML1A 5GLFA 1KQFA 2CW0D 2VPZA 5EPPA 3GTLA 2A68D 1VC3B 1PYQA 1ZYRD 3CZBA 4CS0A 1SMYD 1YNND 3HU3A 2R7ZA 1OGYA 3OUGA 3PLXB 1TWFA 1R7RA 5B6CA 2E2HA 5FTJA 1PQFA 3H0GA 3GTQA 1DMRA 1YNJD 3QQ8A 3GTPA 2G6GA 2JIQA 1CZ4A 5DYGA 2JIOA 3QC8A 2JIMA 1KQGA 1E61A 1I50A 1PPYA 2V45A 4RV0A 1G8JA 4KODA 4D7ZB 2GAEA 2IV2X 2B63A 1S3SA 1Y1VA 2V3VA 2BE5D 3CQZA 1AA6A 3GTOA 1G8KA 2JA6A 4GA5A 2A6ED 2NYAA 3TIWA 1QDNA 4C2MA 1FDOA 5FTNA 1EU1A 2VPXA 2A6HD 1H0HA 1FDIA 1WCMA 3GTGA 1TWAA 4KLNA 2Y0SA 2NVXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NAP A;  2NVY A;  4KO8 A;  1AW8 B;  5C1B A;  1R9T A;  5FTM A;  1Q16 A;  1E60 A;  1WLF A;  1QCS A;  5DYI A;  2JA5 A;  5C18 A;  3GTK A;  3IR7 A;  1Y1W A;  4AAY A;  2R93 A;  2WAQ A;  2KI8 A;  2PMZ A;  1UHD A;  2VUM A;  3IR6 A;  1PT1 A;  5FTL A;  3HKZ A;  1Y5I A;  1TWC A;  1E32 A;  1PT0 A;  2JA7 A;  1IW7 D;  5T5M D;  2E2I A;  1UHE A;  1SFO A;  5FTK A;  1TWG A;  3GTM A;  1TMO A;  1DMS A;  2E7Z A;  1E5V A;  3QWZ A;  1H5N A;  4GA6 A;  3DMR A;  1K83 A;  1R27 A;  2YU9 A;  2JIP A;  3HU2 A;  3IR5 A;  4AYB A;  3HU1 A;  1CZ5 A;  2WB1 A;  4AOK B;  4AON B;  2R92 A;  4QIW A;  1PQH A;  1Y4Z A;  1CR5 A;  3O5A A;  1SIW A;  3FKI A;  1PQE A;  1TWH A;  4CRY G;  1I3Q A;  4AZD A;  2DMR A;  4DMR A;  4KDI A;  2C45 A;  1YLE A;  3TM7 B;  3CF2 A;  1PYU B;  2EEO B;  5T5I D;  4CRZ A;  1E18 A;  3QQ7 A;  3GTJ A;  2PJH B;  4KDL A;  2JIR A;  2VPW A;  2VPY A;  3ML1 A;  5GLF A;  1KQF A;  2VPZ A;  5EPP A;  3GTL A;  1VC3 B;  1PYQ A;  4CS0 A;  2R7Z A;  3HU3 A;  1OGY A;  3OUG A;  3PLX B;  1TWF A;  1R7R A;  5B6C A;  2E2H A;  5FTJ A;  1PQF A;  3H0G A;  3GTQ A;  1DMR A;  3QQ8 A;  3GTP A;  2JIQ A;  1CZ4 A;  5DYG A;  2JIO A;  3QC8 A;  2JIM A;  1KQG A;  1E61 A;  1I50 A;  1PPY A;  2V45 A;  4RV0 A;  1G8J A;  4KOD A;  4D7Z B;  2IV2 X;  2B63 A;  1S3S A;  1Y1V A;  2V3V A;  3CQZ A;  1AA6 A;  3GTO A;  1G8K A;  2JA6 A;  4GA5 A;  3TIW A;  2NYA A;  1QDN A;  4C2M A;  1FDO A;  5FTN A;  1EU1 A;  2VPX A;  1H0H A;  1FDI A;  1WCM A;  3GTG A;  1TWA A;  4KLN A;  2Y0S A;  2NVX A; 
#chains in the Genus database with same CATH topology
 4FER A;  2BH0 A;  2NAP A;  2NVY A;  4KO8 A;  2PI8 A;  1AW8 B;  2G5D A;  5C1B A;  1R9T A;  5FTM A;  2HCZ X;  2KQA A;  4ENG A;  1Q16 A;  1E60 A;  2PIC A;  1WLF A;  1QCS A;  5DYI A;  2JA5 A;  4L48 A;  5C18 A;  3GTK A;  3IR7 A;  1Y1W A;  3X2G A;  4AAY A;  2R93 A;  2WAQ A;  2O5J D;  2KI8 A;  2PMZ A;  1UHD A;  2VUM A;  3IR6 A;  1PT1 A;  5FTL A;  3HKZ A;  2AE0 X;  1Y5I A;  1TWC A;  1E32 A;  1PT0 A;  2JA7 A;  1IW7 D;  5T5M D;  2E2I A;  1UHE A;  1SFO A;  5FTK A;  1TWG A;  2ENG A;  3GTM A;  4JP7 A;  1WC2 A;  1TMO A;  1DMS A;  1ZC1 A;  3X2K A;  2E7Z A;  1E5V A;  3QWZ A;  1H5N A;  4GA6 A;  3DMR A;  2PNW A;  1K83 A;  1R27 A;  2YU9 A;  2JIP A;  3HU2 A;  3IR5 A;  3X2P A;  1HD5 A;  3SUM A;  3HU1 A;  4AYB A;  1BW4 A;  1CZ5 A;  2WB1 A;  4AOK B;  4AON B;  2R92 A;  4QIW A;  1PQH A;  1Y4Z A;  1CR5 A;  3O5A A;  1SIW A;  3X2J A;  3FKI A;  3SUK A;  4FG4 A;  2PJJ A;  3M3G A;  2A69 D;  4AVR A;  1PQE A;  1TWH A;  3X2H A;  4CRY G;  1I3Q A;  5GLX A;  4AZD A;  4JCW A;  3X2I A;  2DMR A;  4DMR A;  4KDI A;  2C45 A;  1YLE A;  3ENG A;  3TM7 B;  3CF2 A;  1PYU B;  1L8F A;  2EEO B;  5T5I D;  3D30 A;  4CRZ A;  1E18 A;  4NOH A;  3QQ7 A;  3GTJ A;  2PJH B;  2YUJ A;  4KDL A;  2JIR A;  2VPW A;  2VPY A;  5GM9 A;  3ML1 A;  5GLF A;  1KQF A;  2CW0 D;  2VPZ A;  5EPP A;  4FFT A;  3GTL A;  2A68 D;  4JS7 A;  1VC3 B;  1PYQ A;  1ZYR D;  3CZB A;  4CS0 A;  1SMY D;  1YNN D;  3HU3 A;  2R7Z A;  1OGY A;  3OUG A;  3PLX B;  3X2M A;  1TWF A;  1R7R A;  5B6C A;  3X2N A;  2E2H A;  5FTJ A;  1BW3 A;  1PQF A;  3H0G A;  5H4U A;  3GTQ A;  1DMR A;  1YNJ D;  4FG2 A;  3QQ8 A;  1N10 A;  2G6G A;  2JIQ A;  3GTP A;  1CZ4 A;  5DYG A;  2JIO A;  3QC8 A;  1OA9 A;  2JIM A;  4JP6 A;  4JJO A;  1KQG A;  1E61 A;  1I50 A;  1PPY A;  2V45 A;  4RV0 A;  1G8J A;  4KOD A;  4D7Z B;  2GAE A;  3SUJ A;  3X2L A;  4ZM7 A;  2IV2 X;  2B63 A;  1S3S A;  1Y1V A;  2V3V A;  2BE5 D;  1OA7 A;  3CQZ A;  5GLY A;  1AA6 A;  1G8K A;  3GTO A;  4GA5 A;  2A6E D;  2NYA A;  3TIW A;  2JA6 A;  1QDN A;  4C2M A;  1FDO A;  5FTN A;  1EU1 A;  2VPX A;  3X2O A;  2A6H D;  1H0H A;  1FDI A;  1WCM A;  3GTG A;  1TWA A;  4KLN A;  3SUL A;  2Y0S A;  2NVX A; 
#chains in the Genus database with same CATH homology
 2NAP A;  2NVY A;  4KO8 A;  2PI8 A;  1AW8 B;  2G5D A;  5C1B A;  1R9T A;  5FTM A;  1Q16 A;  1E60 A;  2PIC A;  1WLF A;  1QCS A;  5DYI A;  2JA5 A;  5C18 A;  3GTK A;  3IR7 A;  1Y1W A;  4AAY A;  2R93 A;  2WAQ A;  2O5J D;  2KI8 A;  2PMZ A;  1UHD A;  2VUM A;  3IR6 A;  1PT1 A;  5FTL A;  3HKZ A;  2AE0 X;  1Y5I A;  1TWC A;  1E32 A;  1PT0 A;  2JA7 A;  1IW7 D;  5T5M D;  2E2I A;  1UHE A;  1SFO A;  5FTK A;  1TWG A;  3GTM A;  1TMO A;  1DMS A;  1ZC1 A;  2E7Z A;  1E5V A;  3QWZ A;  1H5N A;  4GA6 A;  3DMR A;  2PNW A;  1K83 A;  1R27 A;  2YU9 A;  2JIP A;  3HU2 A;  3IR5 A;  4AYB A;  3HU1 A;  1CZ5 A;  2WB1 A;  4AOK B;  4AON B;  2R92 A;  4QIW A;  1PQH A;  1Y4Z A;  1CR5 A;  3O5A A;  1SIW A;  3FKI A;  2PJJ A;  2A69 D;  1PQE A;  1TWH A;  4CRY G;  1I3Q A;  4AZD A;  2DMR A;  4DMR A;  4KDI A;  2C45 A;  1YLE A;  3TM7 B;  3CF2 A;  1PYU B;  2EEO B;  5T5I D;  4CRZ A;  1E18 A;  4NOH A;  3QQ7 A;  3GTJ A;  2PJH B;  2YUJ A;  4KDL A;  2JIR A;  2VPW A;  2VPY A;  3ML1 A;  5GLF A;  1KQF A;  2CW0 D;  2VPZ A;  5EPP A;  3GTL A;  2A68 D;  1VC3 B;  1PYQ A;  1ZYR D;  3CZB A;  4CS0 A;  1SMY D;  1YNN D;  3HU3 A;  2R7Z A;  1OGY A;  3OUG A;  3PLX B;  1TWF A;  1R7R A;  5B6C A;  2E2H A;  5FTJ A;  1PQF A;  3H0G A;  3GTQ A;  1DMR A;  1YNJ D;  3QQ8 A;  3GTP A;  2G6G A;  2JIQ A;  1CZ4 A;  5DYG A;  2JIO A;  3QC8 A;  2JIM A;  1KQG A;  1E61 A;  1I50 A;  1PPY A;  2V45 A;  4RV0 A;  1G8J A;  4KOD A;  4D7Z B;  2GAE A;  2IV2 X;  2B63 A;  1S3S A;  1Y1V A;  2V3V A;  2BE5 D;  3CQZ A;  1AA6 A;  3GTO A;  1G8K A;  2JA6 A;  4GA5 A;  2A6E D;  2NYA A;  3TIW A;  1QDN A;  4C2M A;  1FDO A;  5FTN A;  1EU1 A;  2VPX A;  2A6H D;  1H0H A;  1FDI A;  1WCM A;  3GTG A;  1TWA A;  4KLN A;  2Y0S A;  2NVX A; 
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