1PT0 | Genus

Total Genus 36

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	36
sequence length	117
structure length	117
Chain Sequence	SMIRTMLQGKLHRVKVTHADLHYEGSACAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMK

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lyase
source organism	Escherichia coli
publication title	Structural constraints on protein self-processing in L-aspartate-alpha-decarboxylase pubmed doi rcsb
molecule keywords	Aspartate 1-decarboxylase
total genus	36
structure length	117
sequence length	117
chains with identical sequence	B
ec nomenclature	ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date	2003-06-22

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02261	Asp_decarbox	Aspartate decarboxylase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.40.20	Mainly Beta	Beta Barrel	Barwin-like endoglucanases	Barwin-like endoglucanases	1pt0A00

1TWHA 1TWAA 3GTLA 1PQHA 4GA5A 3GTGA 2E2IA 2JIRA 1H0HA 4CS0A 4CRYG 2PMZA 1SFOA 2NAPA 2JA5A 1TMOA 1KQFA 1E61A 1PT1A 4RV0A 5C1BA 2VUMA 1Y1WA 5FTJA 1S3SA 1FDIA 3GTKA 5T5MD 3FKIA 1UHEA 1R7RA 1Q16A 1E18A 1QDNA 2WAQA 2DMRA 5DYGA 3QC8A 5B6CA 3IR6A 3GTPA 1H5NA 2E7ZA 4AOKB 1G8JA 1TWCA 1Y5IA 3IR5A 1TWGA 4KLNA 3QQ7A 5EPPA 3TM7B 3H0GA 4CRZA 4KO8A 1PPYA 1Y1VA 3OUGA 2JA7A 2Y0SA 4D7ZB 1KQGA 1DMRA 3TIWA 2VPWA 2VPXA 1PQFA 3HU2A 5T5ID 1AW8B 2R7ZA 1TWFA 2E2HA 1PT0A 1FDOA 2V3VA 3PLXB 2B63A 2JIPA 2NVYA 5GLFA 1WCMA 1QCSA 3CF2A 2JA6A 4DMRA 1R27A 4AZDA 1OGYA 1PYQA 3GTQA 2JIMA 1E32A 2R93A 1SIWA 2VPZA 3QWZA 2V45A 4C2MA 3ML1A 3DMRA 4GA6A 5FTMA 4KODA 2YU9A 4AYBA 3GTOA 5DYIA 1WLFA 1YLEA 3GTMA 5FTLA 4KDIA 3GTJA 2VPYA 2EEOB 3IR7A 1E60A 2JIOA 1I3QA 4QIWA 3HU3A 1VC3B 2WB1A 1R9TA 3HU1A 1UHDA 3CQZA 2PJHB 1DMSA 5FTKA 1K83A 1G8KA 1PQEA 2JIQA 1I50A 1IW7D 2NVXA 5C18A 2IV2X 2R92A 1CZ4A 4KDLA 1PYUB 4AAYA 1Y4ZA 1EU1A 3O5AA 3QQ8A 3HKZA 1CZ5A 1AA6A 2C45A 1E5VA 2KI8A 5FTNA 1CR5A 4AONB 2NYAA
chains in the Genus database with same CATH superfamily

1TWHA 1TWAA 3GTLA 1PQHA 4GA5A 3GTGA 2CW0D 2E2IA 2JIRA 5GM9A 3SUJA 1H0HA 4CS0A 4CRYG 2HCZX 2PMZA 2PI8A 2G5DA 2NAPA 1SFOA 2JA5A 1TMOA 3X2HA 1KQFA 1E61A 1PT1A 4RV0A 1OA7A 5C1BA 2VUMA 1YNJD 3D30A 1BW4A 1YNND 4ENGA 5FTJA 1Y1WA 4FFTA 1S3SA 2AE0X 1FDIA 2A69D 4JP6A 3GTKA 5T5MD 1ZYRD 3FKIA 1UHEA 1R7RA 2PNWA 2BE5D 1Q16A 1E18A 1QDNA 2WAQA 2DMRA 3X2NA 4L48A 5DYGA 3X2GA 2O5JD 3QC8A 5B6CA 3X2JA 3IR6A 3GTPA 1H5NA 2E7ZA 4AOKB 3X2OA 1G8JA 1TWCA 1Y5IA 3IR5A 1TWGA 4KLNA 3QQ7A 5EPPA 3SULA 3TM7B 3H0GA 2PICA 4NOHA 3M3GA 3X2LA 4KO8A 4CRZA 1PPYA 5GLXA 1OA9A 1Y1VA 3OUGA 2A6ED 2JA7A 2Y0SA 4D7ZB 1KQGA 1DMRA 3TIWA 2VPWA 2VPXA 1PQFA 3X2IA 3HU2A 5T5ID 1HD5A 1AW8B 2ENGA 2R7ZA 1TWFA 2E2HA 1PT0A 2A6HD 1FDOA 2V3VA 3PLXB 2B63A 4JCWA 2JIPA 2NVYA 5GLFA 1WCMA 1QCSA 2BH0A 3CF2A 3X2PA 4DMRA 3X2MA 2JA6A 1R27A 5GLYA 4AZDA 1OGYA 1PYQA 3CZBA 3GTQA 2JIMA 1E32A 2R93A 1SIWA 2VPZA 3QWZA 1BW3A 3ENGA 2V45A 4C2MA 3ML1A 3DMRA 4GA6A 5FTMA 2KQAA 4KODA 4FG2A 2YU9A 2A68D 4AYBA 3GTOA 5DYIA 1WLFA 3SUMA 1YLEA 4AVRA 3GTMA 4JJOA 5FTLA 2G6GA 4KDIA 3GTJA 4ZM7A 2VPYA 2EEOB 1WC2A 1E60A 2JIOA 3IR7A 1I3QA 4QIWA 3HU3A 1VC3B 2WB1A 1N10A 1R9TA 1SMYD 2GAEA 3HU1A 1UHDA 2PJJA 3CQZA 4FG4A 2PJHB 1DMSA 5FTKA 4JS7A 1K83A 4JP7A 1G8KA 1PQEA 2JIQA 5H4UA 1IW7D 1I50A 2NVXA 5C18A 2IV2X 2R92A 1CZ4A 4KDLA 1PYUB 4AAYA 1L8FA 1Y4ZA 3SUKA 2YUJA 1EU1A 3O5AA 3QQ8A 3HKZA 1CZ5A 4FERA 1AA6A 2C45A 1E5VA 1ZC1A 3X2KA 2KI8A 5FTNA 1CR5A 4AONB 2NYAA
chains in the Genus database with same CATH topology

1TWHA 1TWAA 3GTLA 1PQHA 4GA5A 3GTGA 2CW0D 2E2IA 2JIRA 1H0HA 4CS0A 4CRYG 2PMZA 2PI8A 2G5DA 2NAPA 1SFOA 2JA5A 1TMOA 1KQFA 1E61A 1PT1A 4RV0A 5C1BA 2VUMA 1YNJD 1YNND 1Y1WA 5FTJA 1S3SA 2AE0X 1FDIA 2A69D 3GTKA 5T5MD 1ZYRD 3FKIA 1UHEA 1R7RA 2PNWA 2BE5D 1Q16A 1E18A 1QDNA 2WAQA 2DMRA 5DYGA 2O5JD 3QC8A 5B6CA 3IR6A 3GTPA 1H5NA 2E7ZA 4AOKB 1G8JA 1TWCA 1Y5IA 3IR5A 1TWGA 4KLNA 3QQ7A 5EPPA 3TM7B 3H0GA 2PICA 4NOHA 4CRZA 4KO8A 1PPYA 1Y1VA 3OUGA 2A6ED 2JA7A 2Y0SA 4D7ZB 1KQGA 1DMRA 3TIWA 2VPWA 2VPXA 1PQFA 3HU2A 5T5ID 1AW8B 2R7ZA 1TWFA 2E2HA 1PT0A 2A6HD 1FDOA 2V3VA 3PLXB 2B63A 2JIPA 2NVYA 5GLFA 1WCMA 1QCSA 3CF2A 2JA6A 4DMRA 1R27A 4AZDA 1OGYA 1PYQA 3CZBA 3GTQA 2JIMA 1E32A 2R93A 1SIWA 2VPZA 3QWZA 2V45A 4C2MA 3ML1A 3DMRA 4GA6A 5FTMA 4KODA 2YU9A 2A68D 4AYBA 3GTOA 5DYIA 1WLFA 1YLEA 3GTMA 5FTLA 2G6GA 4KDIA 3GTJA 2VPYA 2EEOB 3IR7A 1E60A 2JIOA 1I3QA 4QIWA 3HU3A 1VC3B 2WB1A 1R9TA 1SMYD 2GAEA 3HU1A 1UHDA 2PJJA 3CQZA 2PJHB 1DMSA 5FTKA 1K83A 1G8KA 1PQEA 2JIQA 1I50A 1IW7D 2NVXA 5C18A 2IV2X 2R92A 1CZ4A 4KDLA 1PYUB 4AAYA 1Y4ZA 2YUJA 1EU1A 3O5AA 3QQ8A 3HKZA 1CZ5A 1AA6A 2C45A 1E5VA 1ZC1A 2KI8A 5FTNA 1CR5A 4AONB 2NYAA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1TWH A;  1TWA A;  3GTL A;  1PQH A;  4GA5 A;  3GTG A;  2E2I A;  2JIR A;  1H0H A;  4CS0 A;  4CRY G;  2PMZ A;  1SFO A;  2NAP A;  2JA5 A;  1TMO A;  1KQF A;  1E61 A;  1PT1 A;  4RV0 A;  5C1B A;  2VUM A;  1Y1W A;  5FTJ A;  1S3S A;  1FDI A;  3GTK A;  5T5M D;  3FKI A;  1UHE A;  1R7R A;  1Q16 A;  1E18 A;  1QDN A;  2WAQ A;  2DMR A;  5DYG A;  3QC8 A;  5B6C A;  3IR6 A;  3GTP A;  1H5N A;  2E7Z A;  4AOK B;  1G8J A;  1TWC A;  1Y5I A;  3IR5 A;  1TWG A;  4KLN A;  3QQ7 A;  5EPP A;  3TM7 B;  3H0G A;  4CRZ A;  4KO8 A;  1PPY A;  1Y1V A;  3OUG A;  2JA7 A;  2Y0S A;  4D7Z B;  1KQG A;  1DMR A;  3TIW A;  2VPW A;  2VPX A;  1PQF A;  3HU2 A;  5T5I D;  1AW8 B;  2R7Z A;  1TWF A;  2E2H A;  1PT0 A;  1FDO A;  2V3V A;  3PLX B;  2B63 A;  2JIP A;  2NVY A;  5GLF A;  1WCM A;  1QCS A;  3CF2 A;  2JA6 A;  4DMR A;  1R27 A;  4AZD A;  1OGY A;  1PYQ A;  3GTQ A;  2JIM A;  1E32 A;  2R93 A;  1SIW A;  2VPZ A;  3QWZ A;  2V45 A;  4C2M A;  3ML1 A;  3DMR A;  4GA6 A;  5FTM A;  4KOD A;  2YU9 A;  4AYB A;  3GTO A;  5DYI A;  1WLF A;  1YLE A;  3GTM A;  5FTL A;  4KDI A;  3GTJ A;  2VPY A;  2EEO B;  3IR7 A;  1E60 A;  2JIO A;  1I3Q A;  4QIW A;  3HU3 A;  1VC3 B;  2WB1 A;  1R9T A;  3HU1 A;  1UHD A;  3CQZ A;  2PJH B;  1DMS A;  5FTK A;  1K83 A;  1G8K A;  1PQE A;  2JIQ A;  1I50 A;  1IW7 D;  2NVX A;  5C18 A;  2IV2 X;  2R92 A;  1CZ4 A;  4KDL A;  1PYU B;  4AAY A;  1Y4Z A;  1EU1 A;  3O5A A;  3QQ8 A;  3HKZ A;  1CZ5 A;  1AA6 A;  2C45 A;  1E5V A;  2KI8 A;  5FTN A;  1CR5 A;  4AON B;  2NYA A; 
#chains in the Genus database with same CATH topology
 1TWH A;  1TWA A;  3GTL A;  1PQH A;  4GA5 A;  3GTG A;  2CW0 D;  2E2I A;  2JIR A;  5GM9 A;  3SUJ A;  1H0H A;  4CS0 A;  4CRY G;  2HCZ X;  2PMZ A;  2PI8 A;  2G5D A;  2NAP A;  1SFO A;  2JA5 A;  1TMO A;  3X2H A;  1KQF A;  1E61 A;  1PT1 A;  4RV0 A;  1OA7 A;  5C1B A;  2VUM A;  1YNJ D;  3D30 A;  1BW4 A;  1YNN D;  4ENG A;  5FTJ A;  1Y1W A;  4FFT A;  1S3S A;  2AE0 X;  1FDI A;  2A69 D;  4JP6 A;  3GTK A;  5T5M D;  1ZYR D;  3FKI A;  1UHE A;  1R7R A;  2PNW A;  2BE5 D;  1Q16 A;  1E18 A;  1QDN A;  2WAQ A;  2DMR A;  3X2N A;  4L48 A;  5DYG A;  3X2G A;  2O5J D;  3QC8 A;  5B6C A;  3X2J A;  3IR6 A;  3GTP A;  1H5N A;  2E7Z A;  4AOK B;  3X2O A;  1G8J A;  1TWC A;  1Y5I A;  3IR5 A;  1TWG A;  4KLN A;  3QQ7 A;  5EPP A;  3SUL A;  3TM7 B;  3H0G A;  2PIC A;  4NOH A;  3M3G A;  3X2L A;  4KO8 A;  4CRZ A;  1PPY A;  5GLX A;  1OA9 A;  1Y1V A;  3OUG A;  2A6E D;  2JA7 A;  2Y0S A;  4D7Z B;  1KQG A;  1DMR A;  3TIW A;  2VPW A;  2VPX A;  1PQF A;  3X2I A;  3HU2 A;  5T5I D;  1HD5 A;  1AW8 B;  2ENG A;  2R7Z A;  1TWF A;  2E2H A;  1PT0 A;  2A6H D;  1FDO A;  2V3V A;  3PLX B;  2B63 A;  4JCW A;  2JIP A;  2NVY A;  5GLF A;  1WCM A;  1QCS A;  2BH0 A;  3CF2 A;  3X2P A;  4DMR A;  3X2M A;  2JA6 A;  1R27 A;  5GLY A;  4AZD A;  1OGY A;  1PYQ A;  3CZB A;  3GTQ A;  2JIM A;  1E32 A;  2R93 A;  1SIW A;  2VPZ A;  3QWZ A;  1BW3 A;  3ENG A;  2V45 A;  4C2M A;  3ML1 A;  3DMR A;  4GA6 A;  5FTM A;  2KQA A;  4KOD A;  4FG2 A;  2YU9 A;  2A68 D;  4AYB A;  3GTO A;  5DYI A;  1WLF A;  3SUM A;  1YLE A;  4AVR A;  3GTM A;  4JJO A;  5FTL A;  2G6G A;  4KDI A;  3GTJ A;  4ZM7 A;  2VPY A;  2EEO B;  1WC2 A;  1E60 A;  2JIO A;  3IR7 A;  1I3Q A;  4QIW A;  3HU3 A;  1VC3 B;  2WB1 A;  1N10 A;  1R9T A;  1SMY D;  2GAE A;  3HU1 A;  1UHD A;  2PJJ A;  3CQZ A;  4FG4 A;  2PJH B;  1DMS A;  5FTK A;  4JS7 A;  1K83 A;  4JP7 A;  1G8K A;  1PQE A;  2JIQ A;  5H4U A;  1IW7 D;  1I50 A;  2NVX A;  5C18 A;  2IV2 X;  2R92 A;  1CZ4 A;  4KDL A;  1PYU B;  4AAY A;  1L8F A;  1Y4Z A;  3SUK A;  2YUJ A;  1EU1 A;  3O5A A;  3QQ8 A;  3HKZ A;  1CZ5 A;  4FER A;  1AA6 A;  2C45 A;  1E5V A;  1ZC1 A;  3X2K A;  2KI8 A;  5FTN A;  1CR5 A;  4AON B;  2NYA A; 
#chains in the Genus database with same CATH homology
 1TWH A;  1TWA A;  3GTL A;  1PQH A;  4GA5 A;  3GTG A;  2CW0 D;  2E2I A;  2JIR A;  1H0H A;  4CS0 A;  4CRY G;  2PMZ A;  2PI8 A;  2G5D A;  2NAP A;  1SFO A;  2JA5 A;  1TMO A;  1KQF A;  1E61 A;  1PT1 A;  4RV0 A;  5C1B A;  2VUM A;  1YNJ D;  1YNN D;  1Y1W A;  5FTJ A;  1S3S A;  2AE0 X;  1FDI A;  2A69 D;  3GTK A;  5T5M D;  1ZYR D;  3FKI A;  1UHE A;  1R7R A;  2PNW A;  2BE5 D;  1Q16 A;  1E18 A;  1QDN A;  2WAQ A;  2DMR A;  5DYG A;  2O5J D;  3QC8 A;  5B6C A;  3IR6 A;  3GTP A;  1H5N A;  2E7Z A;  4AOK B;  1G8J A;  1TWC A;  1Y5I A;  3IR5 A;  1TWG A;  4KLN A;  3QQ7 A;  5EPP A;  3TM7 B;  3H0G A;  2PIC A;  4NOH A;  4CRZ A;  4KO8 A;  1PPY A;  1Y1V A;  3OUG A;  2A6E D;  2JA7 A;  2Y0S A;  4D7Z B;  1KQG A;  1DMR A;  3TIW A;  2VPW A;  2VPX A;  1PQF A;  3HU2 A;  5T5I D;  1AW8 B;  2R7Z A;  1TWF A;  2E2H A;  1PT0 A;  2A6H D;  1FDO A;  2V3V A;  3PLX B;  2B63 A;  2JIP A;  2NVY A;  5GLF A;  1WCM A;  1QCS A;  3CF2 A;  2JA6 A;  4DMR A;  1R27 A;  4AZD A;  1OGY A;  1PYQ A;  3CZB A;  3GTQ A;  2JIM A;  1E32 A;  2R93 A;  1SIW A;  2VPZ A;  3QWZ A;  2V45 A;  4C2M A;  3ML1 A;  3DMR A;  4GA6 A;  5FTM A;  4KOD A;  2YU9 A;  2A68 D;  4AYB A;  3GTO A;  5DYI A;  1WLF A;  1YLE A;  3GTM A;  5FTL A;  2G6G A;  4KDI A;  3GTJ A;  2VPY A;  2EEO B;  3IR7 A;  1E60 A;  2JIO A;  1I3Q A;  4QIW A;  3HU3 A;  1VC3 B;  2WB1 A;  1R9T A;  1SMY D;  2GAE A;  3HU1 A;  1UHD A;  2PJJ A;  3CQZ A;  2PJH B;  1DMS A;  5FTK A;  1K83 A;  1G8K A;  1PQE A;  2JIQ A;  1I50 A;  1IW7 D;  2NVX A;  5C18 A;  2IV2 X;  2R92 A;  1CZ4 A;  4KDL A;  1PYU B;  4AAY A;  1Y4Z A;  2YUJ A;  1EU1 A;  3O5A A;  3QQ8 A;  3HKZ A;  1CZ5 A;  1AA6 A;  2C45 A;  1E5V A;  1ZC1 A;  2KI8 A;  5FTN A;  1CR5 A;  4AON B;  2NYA A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1PT0A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations