1UHD | Genus

Total Genus 17

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	17
sequence length	95
structure length	95
Chain Sequence	ITIDEDLAKLAKLREGMKVEIVDVNNGERFSTYVILGKKRGEICVNGAAARKVAIGDVVIILAYASMNEDEINAHKPSIVLVDEKNEILEKGLEH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__218326931993059__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__218326931993059__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/1UHD/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__218326931993059__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"218326931993059","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/1UHD/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__218326931993059__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lyase
source organism	Helicobacter pylori
publication title	Crystal structure of the schiff base intermediate prior to decarboxylation in the catalytic cycle of aspartate alpha-decarboxylase pubmed doi rcsb
molecule keywords	Aspartate 1-decarboxylase beta chain
total genus	17
structure length	95
sequence length	95
ec nomenclature	ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date	2003-07-01

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.40.20	Mainly Beta	Beta Barrel	Barwin-like endoglucanases	Barwin-like endoglucanases	1uhdA00

1E5VA 2VPXA 4AAYA 1E60A 3TM7B 2JA5A 3H0GA 1KQFA 5GLFA 1PYUB 3HKZA 2JA6A 4AYBA 5C1BA 4GA6A 4CS0A 2JIQA 3GTOA 1YLEA 3IR7A 1G8KA 1FDOA 1QDNA 1Y1WA 2NAPA 1PPYA 2E2IA 1VC3B 1Y4ZA 2WB1A 3GTKA 2IV2X 1R27A 3GTLA 3CQZA 3ML1A 3QQ8A 2PJHB 1TWFA 1S3SA 1SIWA 2PMZA 3O5AA 2R7ZA 1Y1VA 4KDLA 3OUGA 1AA6A 3FKIA 4D7ZB 3HU3A 1H5NA 1PT0A 1TWGA 2V3VA 1K83A 5EPPA 4AZDA 2VUMA 5T5ID 3GTPA 2DMRA 4AONB 1R9TA 2B63A 1E61A 3GTMA 4GA5A 1UHEA 1PT1A 5DYGA 1OGYA 2JA7A 1E32A 2NVYA 3HU2A 1TWAA 3GTQA 3DMRA 2R93A 3TIWA 1PYQA 2JIRA 4C2MA 5FTNA 2WAQA 3PLXB 4CRYG 2Y0SA 3GTGA 4CRZA 1CZ5A 1Q16A 1FDIA 1G8JA 2C45A 1Y5IA 1I3QA 1DMSA 1I50A 5DYIA 4KODA 1SFOA 1TWCA 4QIWA 2VPYA 1WCMA 1AW8B 1IW7D 5C18A 4RV0A 2EEOB 4KLNA 1PQEA 2JIOA 2NYAA 1KQGA 2KI8A 1WLFA 1UHDA 1EU1A 2NVXA 3HU1A 5B6CA 4KO8A 2YU9A 3IR6A 1CR5A 1E18A 4KDIA 1CZ4A 3QQ7A 4DMRA 3GTJA 1PQFA 3IR5A 1QCSA 5FTMA 2E2HA 2VPWA 1R7RA 1TMOA 5FTKA 2VPZA 3QWZA 2R92A 1PQHA 3QC8A 2JIPA 1DMRA 1H0HA 2E7ZA 5FTLA 3CF2A 2V45A 1TWHA 5T5MD 4AOKB 5FTJA 2JIMA
chains in the Genus database with same CATH superfamily

2AE0X 4AVRA 3SUKA 1E5VA 2VPXA 4AAYA 3ENGA 1E60A 3CZBA 3TM7B 2JA5A 3H0GA 1KQFA 5GLFA 1PYUB 3HKZA 2PJJA 5H4UA 2JA6A 4AYBA 5C1BA 4GA6A 3D30A 2JIQA 4CS0A 1YLEA 4JS7A 3X2IA 3GTOA 3IR7A 1G8KA 1FDOA 1QDNA 1ZYRD 1Y1WA 2NAPA 1PPYA 3X2OA 1VC3B 1Y4ZA 2WB1A 3GTKA 2E2IA 2KQAA 2IV2X 1R27A 1N10A 3GTLA 3SUJA 3CQZA 3ML1A 3QQ8A 2PJHB 4ENGA 2ENGA 1TWFA 1S3SA 1SIWA 3X2HA 2PMZA 3O5AA 2R7ZA 1Y1VA 4KDLA 3OUGA 1AA6A 3FKIA 3X2MA 4D7ZB 3HU3A 1H5NA 4NOHA 1PT0A 1TWGA 2V3VA 1K83A 5EPPA 4AZDA 2VUMA 1YNJD 5T5ID 3GTPA 2DMRA 4AONB 1R9TA 2B63A 1E61A 4JJOA 4FG4A 4JP7A 3GTMA 4GA5A 4FG2A 1UHEA 1PT1A 5DYGA 1OGYA 3SULA 5GLXA 1E32A 2JA7A 1SMYD 2NVYA 3HU2A 1YNND 4JCWA 1TWAA 3GTQA 2BE5D 2PI8A 3DMRA 2R93A 3TIWA 1PYQA 2JIRA 4ZM7A 5FTNA 4C2MA 2WAQA 3X2KA 3PLXB 4CRYG 2Y0SA 3X2PA 3GTGA 4CRZA 1CZ5A 3X2NA 1Q16A 3X2JA 2HCZX 1FDIA 1G8JA 2C45A 1Y5IA 1L8FA 1DMSA 2BH0A 5DYIA 4KODA 3SUMA 3X2LA 1TWCA 2A6HD 4QIWA 1WC2A 2VPYA 1WCMA 1I3QA 1AW8B 1IW7D 5C18A 1BW4A 4FERA 4RV0A 2EEOB 3X2GA 4KLNA 3M3GA 1PQEA 1OA9A 2JIOA 2NYAA 1KQGA 1SFOA 2KI8A 2O5JD 1WLFA 1UHDA 1EU1A 2NVXA 3HU1A 2A69D 1BW3A 5B6CA 4KO8A 5GLYA 2YU9A 3IR6A 4FFTA 2PICA 2PNWA 1CR5A 2G5DA 1E18A 1I50A 4KDIA 1CZ4A 3QQ7A 2A68D 4DMRA 3GTJA 1PQFA 3IR5A 1QCSA 5FTMA 5GM9A 2E2HA 2A6ED 2VPWA 1R7RA 4L48A 1TMOA 5FTKA 2VPZA 3QWZA 2R92A 2YUJA 4JP6A 1OA7A 1PQHA 1HD5A 3QC8A 2G6GA 1DMRA 1H0HA 2E7ZA 1ZC1A 2JIPA 5FTLA 3CF2A 2GAEA 2V45A 1TWHA 2CW0D 5T5MD 4AOKB 5FTJA 2JIMA
chains in the Genus database with same CATH topology

2AE0X 1E5VA 2VPXA 4AAYA 1E60A 3CZBA 3TM7B 2JA5A 3H0GA 1KQFA 5GLFA 1PYUB 3HKZA 2PJJA 2JA6A 4AYBA 5C1BA 4GA6A 4CS0A 2JIQA 3GTOA 1YLEA 3IR7A 1G8KA 1FDOA 1QDNA 1ZYRD 1Y1WA 2NAPA 1PPYA 2E2IA 1VC3B 1Y4ZA 2WB1A 3GTKA 2IV2X 1R27A 3GTLA 3CQZA 3ML1A 3QQ8A 2PJHB 1TWFA 1S3SA 1SIWA 2PMZA 3O5AA 2R7ZA 1Y1VA 4KDLA 3OUGA 1AA6A 3FKIA 4D7ZB 3HU3A 1H5NA 4NOHA 1PT0A 1TWGA 2V3VA 1K83A 5EPPA 4AZDA 2VUMA 1YNJD 5T5ID 3GTPA 2DMRA 4AONB 1R9TA 2B63A 1E61A 3GTMA 4GA5A 1UHEA 1PT1A 5DYGA 1OGYA 2JA7A 1E32A 1SMYD 2NVYA 3HU2A 1YNND 1TWAA 3GTQA 2BE5D 2PI8A 3DMRA 2R93A 3TIWA 1PYQA 2JIRA 4C2MA 5FTNA 2WAQA 3PLXB 4CRYG 2Y0SA 3GTGA 4CRZA 1CZ5A 1Q16A 1FDIA 1G8JA 2C45A 1Y5IA 1I3QA 1DMSA 1I50A 5DYIA 4KODA 1SFOA 1TWCA 2A6HD 4QIWA 2VPYA 1WCMA 1AW8B 1IW7D 5C18A 4RV0A 2EEOB 4KLNA 1PQEA 2JIOA 2NYAA 1KQGA 2KI8A 2O5JD 1WLFA 1UHDA 1EU1A 2NVXA 3HU1A 2A69D 5B6CA 4KO8A 2YU9A 3IR6A 2PICA 2PNWA 1CR5A 2G5DA 1E18A 4KDIA 1CZ4A 3QQ7A 2A68D 4DMRA 3GTJA 1PQFA 3IR5A 1QCSA 5FTMA 2E2HA 2A6ED 2VPWA 1R7RA 1TMOA 5FTKA 2VPZA 3QWZA 2R92A 2YUJA 1PQHA 3QC8A 2G6GA 1DMRA 1H0HA 2E7ZA 1ZC1A 2JIPA 5FTLA 3CF2A 2GAEA 2V45A 1TWHA 2CW0D 5T5MD 4AOKB 5FTJA 2JIMA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1E5V A;  2VPX A;  4AAY A;  1E60 A;  3TM7 B;  2JA5 A;  3H0G A;  1KQF A;  5GLF A;  1PYU B;  3HKZ A;  2JA6 A;  4AYB A;  5C1B A;  4GA6 A;  4CS0 A;  2JIQ A;  3GTO A;  1YLE A;  3IR7 A;  1G8K A;  1FDO A;  1QDN A;  1Y1W A;  2NAP A;  1PPY A;  2E2I A;  1VC3 B;  1Y4Z A;  2WB1 A;  3GTK A;  2IV2 X;  1R27 A;  3GTL A;  3CQZ A;  3ML1 A;  3QQ8 A;  2PJH B;  1TWF A;  1S3S A;  1SIW A;  2PMZ A;  3O5A A;  2R7Z A;  1Y1V A;  4KDL A;  3OUG A;  1AA6 A;  3FKI A;  4D7Z B;  3HU3 A;  1H5N A;  1PT0 A;  1TWG A;  2V3V A;  1K83 A;  5EPP A;  4AZD A;  2VUM A;  5T5I D;  3GTP A;  2DMR A;  4AON B;  1R9T A;  2B63 A;  1E61 A;  3GTM A;  4GA5 A;  1UHE A;  1PT1 A;  5DYG A;  1OGY A;  2JA7 A;  1E32 A;  2NVY A;  3HU2 A;  1TWA A;  3GTQ A;  3DMR A;  2R93 A;  3TIW A;  1PYQ A;  2JIR A;  4C2M A;  5FTN A;  2WAQ A;  3PLX B;  4CRY G;  2Y0S A;  3GTG A;  4CRZ A;  1CZ5 A;  1Q16 A;  1FDI A;  1G8J A;  2C45 A;  1Y5I A;  1I3Q A;  1DMS A;  1I50 A;  5DYI A;  4KOD A;  1SFO A;  1TWC A;  4QIW A;  2VPY A;  1WCM A;  1AW8 B;  1IW7 D;  5C18 A;  4RV0 A;  2EEO B;  4KLN A;  1PQE A;  2JIO A;  2NYA A;  1KQG A;  2KI8 A;  1WLF A;  1UHD A;  1EU1 A;  2NVX A;  3HU1 A;  5B6C A;  4KO8 A;  2YU9 A;  3IR6 A;  1CR5 A;  1E18 A;  4KDI A;  1CZ4 A;  3QQ7 A;  4DMR A;  3GTJ A;  1PQF A;  3IR5 A;  1QCS A;  5FTM A;  2E2H A;  2VPW A;  1R7R A;  1TMO A;  5FTK A;  2VPZ A;  3QWZ A;  2R92 A;  1PQH A;  3QC8 A;  2JIP A;  1DMR A;  1H0H A;  2E7Z A;  5FTL A;  3CF2 A;  2V45 A;  1TWH A;  5T5M D;  4AOK B;  5FTJ A;  2JIM A; 
#chains in the Genus database with same CATH topology
 2AE0 X;  4AVR A;  3SUK A;  1E5V A;  2VPX A;  4AAY A;  3ENG A;  1E60 A;  3CZB A;  3TM7 B;  2JA5 A;  3H0G A;  1KQF A;  5GLF A;  1PYU B;  3HKZ A;  2PJJ A;  5H4U A;  2JA6 A;  4AYB A;  5C1B A;  4GA6 A;  3D30 A;  2JIQ A;  4CS0 A;  1YLE A;  4JS7 A;  3X2I A;  3GTO A;  3IR7 A;  1G8K A;  1FDO A;  1QDN A;  1ZYR D;  1Y1W A;  2NAP A;  1PPY A;  3X2O A;  1VC3 B;  1Y4Z A;  2WB1 A;  3GTK A;  2E2I A;  2KQA A;  2IV2 X;  1R27 A;  1N10 A;  3GTL A;  3SUJ A;  3CQZ A;  3ML1 A;  3QQ8 A;  2PJH B;  4ENG A;  2ENG A;  1TWF A;  1S3S A;  1SIW A;  3X2H A;  2PMZ A;  3O5A A;  2R7Z A;  1Y1V A;  4KDL A;  3OUG A;  1AA6 A;  3FKI A;  3X2M A;  4D7Z B;  3HU3 A;  1H5N A;  4NOH A;  1PT0 A;  1TWG A;  2V3V A;  1K83 A;  5EPP A;  4AZD A;  2VUM A;  1YNJ D;  5T5I D;  3GTP A;  2DMR A;  4AON B;  1R9T A;  2B63 A;  1E61 A;  4JJO A;  4FG4 A;  4JP7 A;  3GTM A;  4GA5 A;  4FG2 A;  1UHE A;  1PT1 A;  5DYG A;  1OGY A;  3SUL A;  5GLX A;  1E32 A;  2JA7 A;  1SMY D;  2NVY A;  3HU2 A;  1YNN D;  4JCW A;  1TWA A;  3GTQ A;  2BE5 D;  2PI8 A;  3DMR A;  2R93 A;  3TIW A;  1PYQ A;  2JIR A;  4ZM7 A;  5FTN A;  4C2M A;  2WAQ A;  3X2K A;  3PLX B;  4CRY G;  2Y0S A;  3X2P A;  3GTG A;  4CRZ A;  1CZ5 A;  3X2N A;  1Q16 A;  3X2J A;  2HCZ X;  1FDI A;  1G8J A;  2C45 A;  1Y5I A;  1L8F A;  1DMS A;  2BH0 A;  5DYI A;  4KOD A;  3SUM A;  3X2L A;  1TWC A;  2A6H D;  4QIW A;  1WC2 A;  2VPY A;  1WCM A;  1I3Q A;  1AW8 B;  1IW7 D;  5C18 A;  1BW4 A;  4FER A;  4RV0 A;  2EEO B;  3X2G A;  4KLN A;  3M3G A;  1PQE A;  1OA9 A;  2JIO A;  2NYA A;  1KQG A;  1SFO A;  2KI8 A;  2O5J D;  1WLF A;  1UHD A;  1EU1 A;  2NVX A;  3HU1 A;  2A69 D;  1BW3 A;  5B6C A;  4KO8 A;  5GLY A;  2YU9 A;  3IR6 A;  4FFT A;  2PIC A;  2PNW A;  1CR5 A;  2G5D A;  1E18 A;  1I50 A;  4KDI A;  1CZ4 A;  3QQ7 A;  2A68 D;  4DMR A;  3GTJ A;  1PQF A;  3IR5 A;  1QCS A;  5FTM A;  5GM9 A;  2E2H A;  2A6E D;  2VPW A;  1R7R A;  4L48 A;  1TMO A;  5FTK A;  2VPZ A;  3QWZ A;  2R92 A;  2YUJ A;  4JP6 A;  1OA7 A;  1PQH A;  1HD5 A;  3QC8 A;  2G6G A;  1DMR A;  1H0H A;  2E7Z A;  1ZC1 A;  2JIP A;  5FTL A;  3CF2 A;  2GAE A;  2V45 A;  1TWH A;  2CW0 D;  5T5M D;  4AOK B;  5FTJ A;  2JIM A; 
#chains in the Genus database with same CATH homology
 2AE0 X;  1E5V A;  2VPX A;  4AAY A;  1E60 A;  3CZB A;  3TM7 B;  2JA5 A;  3H0G A;  1KQF A;  5GLF A;  1PYU B;  3HKZ A;  2PJJ A;  2JA6 A;  4AYB A;  5C1B A;  4GA6 A;  4CS0 A;  2JIQ A;  3GTO A;  1YLE A;  3IR7 A;  1G8K A;  1FDO A;  1QDN A;  1ZYR D;  1Y1W A;  2NAP A;  1PPY A;  2E2I A;  1VC3 B;  1Y4Z A;  2WB1 A;  3GTK A;  2IV2 X;  1R27 A;  3GTL A;  3CQZ A;  3ML1 A;  3QQ8 A;  2PJH B;  1TWF A;  1S3S A;  1SIW A;  2PMZ A;  3O5A A;  2R7Z A;  1Y1V A;  4KDL A;  3OUG A;  1AA6 A;  3FKI A;  4D7Z B;  3HU3 A;  1H5N A;  4NOH A;  1PT0 A;  1TWG A;  2V3V A;  1K83 A;  5EPP A;  4AZD A;  2VUM A;  1YNJ D;  5T5I D;  3GTP A;  2DMR A;  4AON B;  1R9T A;  2B63 A;  1E61 A;  3GTM A;  4GA5 A;  1UHE A;  1PT1 A;  5DYG A;  1OGY A;  2JA7 A;  1E32 A;  1SMY D;  2NVY A;  3HU2 A;  1YNN D;  1TWA A;  3GTQ A;  2BE5 D;  2PI8 A;  3DMR A;  2R93 A;  3TIW A;  1PYQ A;  2JIR A;  4C2M A;  5FTN A;  2WAQ A;  3PLX B;  4CRY G;  2Y0S A;  3GTG A;  4CRZ A;  1CZ5 A;  1Q16 A;  1FDI A;  1G8J A;  2C45 A;  1Y5I A;  1I3Q A;  1DMS A;  1I50 A;  5DYI A;  4KOD A;  1SFO A;  1TWC A;  2A6H D;  4QIW A;  2VPY A;  1WCM A;  1AW8 B;  1IW7 D;  5C18 A;  4RV0 A;  2EEO B;  4KLN A;  1PQE A;  2JIO A;  2NYA A;  1KQG A;  2KI8 A;  2O5J D;  1WLF A;  1UHD A;  1EU1 A;  2NVX A;  3HU1 A;  2A69 D;  5B6C A;  4KO8 A;  2YU9 A;  3IR6 A;  2PIC A;  2PNW A;  1CR5 A;  2G5D A;  1E18 A;  4KDI A;  1CZ4 A;  3QQ7 A;  2A68 D;  4DMR A;  3GTJ A;  1PQF A;  3IR5 A;  1QCS A;  5FTM A;  2E2H A;  2A6E D;  2VPW A;  1R7R A;  1TMO A;  5FTK A;  2VPZ A;  3QWZ A;  2R92 A;  2YUJ A;  1PQH A;  3QC8 A;  2G6G A;  1DMR A;  1H0H A;  2E7Z A;  1ZC1 A;  2JIP A;  5FTL A;  3CF2 A;  2GAE A;  2V45 A;  1TWH A;  2CW0 D;  5T5M D;  4AOK B;  5FTJ A;  2JIM A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1UHDA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN