1UHDA

Crystal structure of aspartate decarboxylase, pyruvoly group bound form
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
95
structure length
95
Chain Sequence
ITIDEDLAKLAKLREGMKVEIVDVNNGERFSTYVILGKKRGEICVNGAAARKVAIGDVVIILAYASMNEDEINAHKPSIVLVDEKNEILEKGLEH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of the schiff base intermediate prior to decarboxylation in the catalytic cycle of aspartate alpha-decarboxylase
pubmed doi rcsb
molecule tags Lyase
source organism Helicobacter pylori
molecule keywords Aspartate 1-decarboxylase beta chain
total genus 17
structure length 95
sequence length 95
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-07-01
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1uhdA00
1Q16A 2NYAA 5C1BA 1KQGA 2E7ZA 3HU1A 4C2MA 1R9TA 4CS0A 1Y1VA 1QCSA 3HU2A 1UHEA 4AONB 3GTJA 1OGYA 1TWFA 5FTKA 3FKIA 1G8JA 4DMRA 1SIWA 2WAQA 1H0HA 2YU9A 2R92A 2C45A 1PQEA 3GTGA 1YLEA 2R7ZA 1E32A 3TM7B 1TWCA 1CR5A 1IW7D 3QQ8A 2NVXA 3HU3A 1CZ4A 2JA5A 1CZ5A 3GTMA 5T5ID 1PYQA 5B6CA 2EEOB 1TWAA 1PYUB 1Y4ZA 2JIRA 1DMRA 3QC8A 4AAYA 3QQ7A 3PLXB 5C18A 1SFOA 1E61A 4KDLA 4QIWA 1EU1A 1FDOA 5GLFA 2JIOA 1WLFA 3GTOA 4RV0A 1K83A 1R7RA 5FTJA 2E2HA 2E2IA 2NVYA 2R93A 1TWHA 1G8KA 2JIPA 1Y1WA 4KDIA 4D7ZB 4KO8A 1QDNA 2PMZA 2VPWA 1Y5IA 2WB1A 2IV2X 3GTLA 1PQHA 3CF2A 4AZDA 1PT1A 2B63A 2DMRA 1FDIA 2JA7A 2NAPA 1PPYA 3H0GA 2VPZA 1R27A 3ML1A 4KLNA 1AW8B 2PJHB 2Y0SA 3QWZA 2JIMA 2VPYA 4AYBA 3GTKA 3O5AA 1E5VA 4AOKB 1UHDA 1H5NA 1AA6A 1I50A 3HKZA 1DMSA 5T5MD 4KODA 1PT0A 5DYGA 1E18A 1S3SA 3CQZA 3DMRA 3TIWA 5EPPA 4GA6A 2VPXA 1E60A 1TMOA 5FTMA 4CRZA 2V45A 5FTLA 1KQFA 3IR7A 3GTQA 5DYIA 3GTPA 1VC3B 2JIQA 3IR5A 2KI8A 4GA5A 2VUMA 1TWGA 3OUGA 2V3VA 1PQFA 4CRYG 5FTNA 1WCMA 1I3QA 2JA6A 3IR6A
chains in the Genus database with same CATH superfamily
4JJOA 1Q16A 2NYAA 3X2LA 5C1BA 1KQGA 4JS7A 2E7ZA 3HU1A 4C2MA 1R9TA 1YNND 3ENGA 2G5DA 4CS0A 1Y1VA 1QCSA 3HU2A 1UHEA 2A6HD 4AONB 3GTJA 2BH0A 1OGYA 1TWFA 2AE0X 1YNJD 1G8JA 3FKIA 5FTKA 1SIWA 2WAQA 1H0HA 4DMRA 2YU9A 2HCZX 2R92A 2YUJA 2C45A 1PQEA 3GTGA 1YLEA 4JCWA 2R7ZA 1E32A 3TM7B 1TWCA 5GM9A 4L48A 1CR5A 1IW7D 3QQ8A 2NVXA 4ZM7A 3HU3A 1OA9A 1CZ4A 2JA5A 1CZ5A 3GTMA 2BE5D 5T5ID 1PYQA 5B6CA 1HD5A 2O5JD 2EEOB 1TWAA 4ENGA 1PYUB 4NOHA 1Y4ZA 2JIRA 1DMRA 3QC8A 4FG2A 5GLXA 4AAYA 2PICA 3QQ7A 1BW4A 3PLXB 2PI8A 5C18A 1SFOA 3X2PA 1E61A 4KDLA 4QIWA 1EU1A 1FDOA 5GLFA 2JIOA 3X2KA 1WLFA 4FG4A 3GTOA 1ZC1A 1N10A 4RV0A 2CW0D 2PNWA 1K83A 1R7RA 5FTJA 2E2HA 3X2OA 2E2IA 3CZBA 2NVYA 2R93A 2ENGA 1TWHA 1G8KA 3SUMA 2JIPA 1Y1WA 4KDIA 5H4UA 3SUJA 4KO8A 1QDNA 4D7ZB 1BW3A 3X2MA 2PMZA 2GAEA 2VPWA 3SULA 1Y5IA 2WB1A 2A6ED 2IV2X 3GTLA 1PQHA 3CF2A 4AZDA 1PT1A 3X2GA 2B63A 3X2HA 2DMRA 1FDIA 2JA7A 3M3GA 2NAPA 1PPYA 3H0GA 2VPZA 4JP6A 1R27A 5GLYA 3X2NA 3X2JA 1WC2A 2G6GA 3ML1A 4KLNA 1AW8B 2PJHB 2Y0SA 3QWZA 2JIMA 2VPYA 1SMYD 4AYBA 3GTKA 2A69D 3O5AA 1E5VA 4JP7A 1UHDA 4AOKB 1H5NA 1AA6A 1I50A 3HKZA 1DMSA 5T5MD 4KODA 1PT0A 1ZYRD 2KQAA 5DYGA 1E18A 1S3SA 2A68D 3DMRA 3CQZA 4FFTA 5EPPA 3TIWA 1L8FA 4GA6A 1OA7A 3D30A 2VPXA 1E60A 1TMOA 5FTMA 2PJJA 2V45A 4CRZA 4FERA 3IR7A 3SUKA 5FTLA 5DYIA 1KQFA 3X2IA 3GTQA 4AVRA 1VC3B 3GTPA 2JIQA 3IR5A 2KI8A 4GA5A 2VUMA 1TWGA 3OUGA 2V3VA 1PQFA 4CRYG 5FTNA 1WCMA 1I3QA 2JA6A 3IR6A
chains in the Genus database with same CATH topology
1Q16A 2NYAA 5C1BA 1KQGA 2E7ZA 3HU1A 4C2MA 1R9TA 1YNND 4CS0A 2G5DA 1Y1VA 1QCSA 3HU2A 1UHEA 2A6HD 4AONB 3GTJA 1OGYA 1TWFA 2AE0X 1YNJD 1G8JA 3FKIA 5FTKA 1SIWA 2WAQA 1H0HA 4DMRA 2YU9A 2R92A 2YUJA 2C45A 1PQEA 3GTGA 1YLEA 2R7ZA 1E32A 3TM7B 1TWCA 1CR5A 1IW7D 3QQ8A 2NVXA 3HU3A 1CZ4A 2JA5A 1CZ5A 3GTMA 2BE5D 5T5ID 1PYQA 5B6CA 2O5JD 2EEOB 1TWAA 1PYUB 4NOHA 1Y4ZA 2JIRA 1DMRA 3QC8A 4AAYA 2PICA 3QQ7A 3PLXB 2PI8A 5C18A 1SFOA 1E61A 4KDLA 4QIWA 1EU1A 1FDOA 5GLFA 2JIOA 1WLFA 3GTOA 1ZC1A 4RV0A 2CW0D 2PNWA 1K83A 1R7RA 5FTJA 2E2HA 2E2IA 3CZBA 2NVYA 2R93A 1TWHA 1G8KA 2JIPA 1Y1WA 4KDIA 4D7ZB 4KO8A 1QDNA 2PMZA 2GAEA 2VPWA 1Y5IA 2WB1A 2A6ED 2IV2X 3GTLA 1PQHA 3CF2A 4AZDA 1PT1A 2B63A 2DMRA 1FDIA 2JA7A 2NAPA 1PPYA 3H0GA 2VPZA 1R27A 2G6GA 3ML1A 4KLNA 1AW8B 2PJHB 2Y0SA 3QWZA 2JIMA 2VPYA 1SMYD 4AYBA 3GTKA 2A69D 3O5AA 1E5VA 4AOKB 1UHDA 1H5NA 1AA6A 1I50A 3HKZA 1DMSA 5T5MD 4KODA 1PT0A 1ZYRD 5DYGA 1E18A 1S3SA 2A68D 3DMRA 3CQZA 5EPPA 3TIWA 4GA6A 2VPXA 1E60A 1TMOA 5FTMA 2PJJA 2V45A 4CRZA 5FTLA 3IR7A 1KQFA 5DYIA 3GTQA 3GTPA 1VC3B 2JIQA 3IR5A 2KI8A 4GA5A 2VUMA 1TWGA 3OUGA 2V3VA 1PQFA 4CRYG 5FTNA 1WCMA 1I3QA 2JA6A 3IR6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q16 A;  2NYA A;  5C1B A;  1KQG A;  2E7Z A;  3HU1 A;  4C2M A;  1R9T A;  4CS0 A;  1Y1V A;  1QCS A;  3HU2 A;  1UHE A;  4AON B;  3GTJ A;  1OGY A;  1TWF A;  5FTK A;  3FKI A;  1G8J A;  4DMR A;  1SIW A;  2WAQ A;  1H0H A;  2YU9 A;  2R92 A;  2C45 A;  1PQE A;  3GTG A;  1YLE A;  2R7Z A;  1E32 A;  3TM7 B;  1TWC A;  1CR5 A;  1IW7 D;  3QQ8 A;  2NVX A;  3HU3 A;  1CZ4 A;  2JA5 A;  1CZ5 A;  3GTM A;  5T5I D;  1PYQ A;  5B6C A;  2EEO B;  1TWA A;  1PYU B;  1Y4Z A;  2JIR A;  1DMR A;  3QC8 A;  4AAY A;  3QQ7 A;  3PLX B;  5C18 A;  1SFO A;  1E61 A;  4KDL A;  4QIW A;  1EU1 A;  1FDO A;  5GLF A;  2JIO A;  1WLF A;  3GTO A;  4RV0 A;  1K83 A;  1R7R A;  5FTJ A;  2E2H A;  2E2I A;  2NVY A;  2R93 A;  1TWH A;  1G8K A;  2JIP A;  1Y1W A;  4KDI A;  4D7Z B;  4KO8 A;  1QDN A;  2PMZ A;  2VPW A;  1Y5I A;  2WB1 A;  2IV2 X;  3GTL A;  1PQH A;  3CF2 A;  4AZD A;  1PT1 A;  2B63 A;  2DMR A;  1FDI A;  2JA7 A;  2NAP A;  1PPY A;  3H0G A;  2VPZ A;  1R27 A;  3ML1 A;  4KLN A;  1AW8 B;  2PJH B;  2Y0S A;  3QWZ A;  2JIM A;  2VPY A;  4AYB A;  3GTK A;  3O5A A;  1E5V A;  4AOK B;  1UHD A;  1H5N A;  1AA6 A;  1I50 A;  3HKZ A;  1DMS A;  5T5M D;  4KOD A;  1PT0 A;  5DYG A;  1E18 A;  1S3S A;  3CQZ A;  3DMR A;  3TIW A;  5EPP A;  4GA6 A;  2VPX A;  1E60 A;  1TMO A;  5FTM A;  4CRZ A;  2V45 A;  5FTL A;  1KQF A;  3IR7 A;  3GTQ A;  5DYI A;  3GTP A;  1VC3 B;  2JIQ A;  3IR5 A;  2KI8 A;  4GA5 A;  2VUM A;  1TWG A;  3OUG A;  2V3V A;  1PQF A;  4CRY G;  5FTN A;  1WCM A;  1I3Q A;  2JA6 A;  3IR6 A; 
#chains in the Genus database with same CATH topology
 4JJO A;  1Q16 A;  2NYA A;  3X2L A;  5C1B A;  1KQG A;  4JS7 A;  2E7Z A;  3HU1 A;  4C2M A;  1R9T A;  1YNN D;  3ENG A;  2G5D A;  4CS0 A;  1Y1V A;  1QCS A;  3HU2 A;  1UHE A;  2A6H D;  4AON B;  3GTJ A;  2BH0 A;  1OGY A;  1TWF A;  2AE0 X;  1YNJ D;  1G8J A;  3FKI A;  5FTK A;  1SIW A;  2WAQ A;  1H0H A;  4DMR A;  2YU9 A;  2HCZ X;  2R92 A;  2YUJ A;  2C45 A;  1PQE A;  3GTG A;  1YLE A;  4JCW A;  2R7Z A;  1E32 A;  3TM7 B;  1TWC A;  5GM9 A;  4L48 A;  1CR5 A;  1IW7 D;  3QQ8 A;  2NVX A;  4ZM7 A;  3HU3 A;  1OA9 A;  1CZ4 A;  2JA5 A;  1CZ5 A;  3GTM A;  2BE5 D;  5T5I D;  1PYQ A;  5B6C A;  1HD5 A;  2O5J D;  2EEO B;  1TWA A;  4ENG A;  1PYU B;  4NOH A;  1Y4Z A;  2JIR A;  1DMR A;  3QC8 A;  4FG2 A;  5GLX A;  4AAY A;  2PIC A;  3QQ7 A;  1BW4 A;  3PLX B;  2PI8 A;  5C18 A;  1SFO A;  3X2P A;  1E61 A;  4KDL A;  4QIW A;  1EU1 A;  1FDO A;  5GLF A;  2JIO A;  3X2K A;  1WLF A;  4FG4 A;  3GTO A;  1ZC1 A;  1N10 A;  4RV0 A;  2CW0 D;  2PNW A;  1K83 A;  1R7R A;  5FTJ A;  2E2H A;  3X2O A;  2E2I A;  3CZB A;  2NVY A;  2R93 A;  2ENG A;  1TWH A;  1G8K A;  3SUM A;  2JIP A;  1Y1W A;  4KDI A;  5H4U A;  3SUJ A;  4KO8 A;  1QDN A;  4D7Z B;  1BW3 A;  3X2M A;  2PMZ A;  2GAE A;  2VPW A;  3SUL A;  1Y5I A;  2WB1 A;  2A6E D;  2IV2 X;  3GTL A;  1PQH A;  3CF2 A;  4AZD A;  1PT1 A;  3X2G A;  2B63 A;  3X2H A;  2DMR A;  1FDI A;  2JA7 A;  3M3G A;  2NAP A;  1PPY A;  3H0G A;  2VPZ A;  4JP6 A;  1R27 A;  5GLY A;  3X2N A;  3X2J A;  1WC2 A;  2G6G A;  3ML1 A;  4KLN A;  1AW8 B;  2PJH B;  2Y0S A;  3QWZ A;  2JIM A;  2VPY A;  1SMY D;  4AYB A;  3GTK A;  2A69 D;  3O5A A;  1E5V A;  4JP7 A;  1UHD A;  4AOK B;  1H5N A;  1AA6 A;  1I50 A;  3HKZ A;  1DMS A;  5T5M D;  4KOD A;  1PT0 A;  1ZYR D;  2KQA A;  5DYG A;  1E18 A;  1S3S A;  2A68 D;  3DMR A;  3CQZ A;  4FFT A;  5EPP A;  3TIW A;  1L8F A;  4GA6 A;  1OA7 A;  3D30 A;  2VPX A;  1E60 A;  1TMO A;  5FTM A;  2PJJ A;  2V45 A;  4CRZ A;  4FER A;  3IR7 A;  3SUK A;  5FTL A;  5DYI A;  1KQF A;  3X2I A;  3GTQ A;  4AVR A;  1VC3 B;  3GTP A;  2JIQ A;  3IR5 A;  2KI8 A;  4GA5 A;  2VUM A;  1TWG A;  3OUG A;  2V3V A;  1PQF A;  4CRY G;  5FTN A;  1WCM A;  1I3Q A;  2JA6 A;  3IR6 A; 
#chains in the Genus database with same CATH homology
 1Q16 A;  2NYA A;  5C1B A;  1KQG A;  2E7Z A;  3HU1 A;  4C2M A;  1R9T A;  1YNN D;  4CS0 A;  2G5D A;  1Y1V A;  1QCS A;  3HU2 A;  1UHE A;  2A6H D;  4AON B;  3GTJ A;  1OGY A;  1TWF A;  2AE0 X;  1YNJ D;  1G8J A;  3FKI A;  5FTK A;  1SIW A;  2WAQ A;  1H0H A;  4DMR A;  2YU9 A;  2R92 A;  2YUJ A;  2C45 A;  1PQE A;  3GTG A;  1YLE A;  2R7Z A;  1E32 A;  3TM7 B;  1TWC A;  1CR5 A;  1IW7 D;  3QQ8 A;  2NVX A;  3HU3 A;  1CZ4 A;  2JA5 A;  1CZ5 A;  3GTM A;  2BE5 D;  5T5I D;  1PYQ A;  5B6C A;  2O5J D;  2EEO B;  1TWA A;  1PYU B;  4NOH A;  1Y4Z A;  2JIR A;  1DMR A;  3QC8 A;  4AAY A;  2PIC A;  3QQ7 A;  3PLX B;  2PI8 A;  5C18 A;  1SFO A;  1E61 A;  4KDL A;  4QIW A;  1EU1 A;  1FDO A;  5GLF A;  2JIO A;  1WLF A;  3GTO A;  1ZC1 A;  4RV0 A;  2CW0 D;  2PNW A;  1K83 A;  1R7R A;  5FTJ A;  2E2H A;  2E2I A;  3CZB A;  2NVY A;  2R93 A;  1TWH A;  1G8K A;  2JIP A;  1Y1W A;  4KDI A;  4D7Z B;  4KO8 A;  1QDN A;  2PMZ A;  2GAE A;  2VPW A;  1Y5I A;  2WB1 A;  2A6E D;  2IV2 X;  3GTL A;  1PQH A;  3CF2 A;  4AZD A;  1PT1 A;  2B63 A;  2DMR A;  1FDI A;  2JA7 A;  2NAP A;  1PPY A;  3H0G A;  2VPZ A;  1R27 A;  2G6G A;  3ML1 A;  4KLN A;  1AW8 B;  2PJH B;  2Y0S A;  3QWZ A;  2JIM A;  2VPY A;  1SMY D;  4AYB A;  3GTK A;  2A69 D;  3O5A A;  1E5V A;  4AOK B;  1UHD A;  1H5N A;  1AA6 A;  1I50 A;  3HKZ A;  1DMS A;  5T5M D;  4KOD A;  1PT0 A;  1ZYR D;  5DYG A;  1E18 A;  1S3S A;  2A68 D;  3DMR A;  3CQZ A;  5EPP A;  3TIW A;  4GA6 A;  2VPX A;  1E60 A;  1TMO A;  5FTM A;  2PJJ A;  2V45 A;  4CRZ A;  5FTL A;  3IR7 A;  1KQF A;  5DYI A;  3GTQ A;  3GTP A;  1VC3 B;  2JIQ A;  3IR5 A;  2KI8 A;  4GA5 A;  2VUM A;  1TWG A;  3OUG A;  2V3V A;  1PQF A;  4CRY G;  5FTN A;  1WCM A;  1I3Q A;  2JA6 A;  3IR6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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