2EEOB

Crystal structure of t.th. hb8 l-aspartate-alpha-decarboxylase complexed with fumarate
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
95
structure length
95
Chain Sequence
VTVDQDLLDAAGILPFEQVDIYDITNGARLTTYALPGERGSGVIGINGAAAHLVKPGDLVILVAYGVFDEEEARNLKPTVVLVDERNRILEVRKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of T.th. HB8 L-Aspartate-alpha-Decarboxylase
rcsb
molecule tags Lyase
source organism Thermus thermophilus
molecule keywords Aspartate 1-decarboxylase
total genus 20
structure length 95
sequence length 95
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2007-02-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 2eeoB00
1Y4ZA 3QWZA 2NYAA 4AOKB 2YU9A 2WAQA 3GTLA 2V3VA 2R7ZA 3GTGA 2IV2X 4CS0A 2JIOA 3H0GA 4RV0A 4GA6A 1E32A 1E61A 4KODA 5FTKA 3CQZA 1Y1VA 5FTMA 4AYBA 1AA6A 1IW7D 5C1BA 1K83A 3QC8A 1PYQA 5FTLA 3CF2A 3HU3A 5FTJA 1PT1A 1UHEA 1Q16A 1Y5IA 3GTMA 1R9TA 2DMRA 1YLEA 1TWAA 2PJHB 1EU1A 1I50A 3OUGA 1PPYA 1E18A 4CRYG 4QIWA 1R7RA 1R27A 1WLFA 2VPXA 1G8KA 3GTOA 2B63A 2E2HA 1PQHA 2JA5A 1DMSA 4CRZA 1TWFA 3DMRA 3IR5A 4KDLA 2NAPA 4AZDA 1PYUB 1PQEA 2EEOB 2VPWA 3IR6A 4C2MA 2VPZA 1KQFA 2C45A 1FDIA 2Y0SA 3HKZA 4AAYA 5B6CA 1VC3B 3GTPA 2KI8A 1SFOA 5C18A 5DYIA 1E60A 3TIWA 2JIPA 3GTQA 3QQ7A 2VPYA 5GLFA 4GA5A 1S3SA 2VUMA 5DYGA 1UHDA 1Y1WA 1H5NA 4AONB 2NVXA 1WCMA 2R92A 1G8JA 2JA7A 2R93A 2NVYA 5EPPA 4KLNA 1QCSA 5T5MD 1I3QA 3QQ8A 2JIRA 1H0HA 3HU2A 4KDIA 1CZ5A 4DMRA 2PMZA 2JA6A 3GTJA 5FTNA 1CZ4A 1TWHA 2JIMA 3PLXB 2E2IA 3GTKA 1TWGA 1SIWA 1TMOA 2WB1A 5T5ID 2JIQA 3FKIA 3O5AA 2V45A 1TWCA 1FDOA 1DMRA 1AW8B 3ML1A 2E7ZA 4D7ZB 3TM7B 3IR7A 4KO8A 1KQGA 1OGYA 1QDNA 3HU1A 1E5VA 1CR5A 1PT0A 1PQFA
chains in the Genus database with same CATH superfamily
1Y4ZA 3QWZA 2NYAA 4AOKB 4JP6A 2WAQA 3SUMA 2YU9A 3GTLA 2V3VA 2R7ZA 3GTGA 2IV2X 2G6GA 4CS0A 2JIOA 3H0GA 4RV0A 4GA6A 1E32A 2A68D 1OA7A 1E61A 4KODA 5FTKA 4JP7A 3CQZA 1Y1VA 4FFTA 5FTMA 3X2OA 4AYBA 1AA6A 1IW7D 2A6ED 3D30A 5C1BA 2O5JD 1K83A 3QC8A 1PYQA 5FTLA 3CF2A 3HU3A 5FTJA 3X2IA 1PT1A 1UHEA 1Q16A 1Y5IA 3GTMA 3X2KA 4FG4A 1BW3A 1R9TA 2DMRA 1YLEA 1TWAA 1N10A 2PJHB 2PI8A 3SUJA 1EU1A 1I50A 1BW4A 4AVRA 3OUGA 4JCWA 3X2MA 1PPYA 1E18A 4CRYG 4QIWA 1R7RA 1R27A 1WLFA 2YUJA 3X2PA 2VPXA 1G8KA 3M3GA 5GLXA 4ENGA 3GTOA 1WC2A 2E2HA 4JJOA 2B63A 2HCZX 1PQHA 2JA5A 1DMSA 4CRZA 1HD5A 1TWFA 3DMRA 3IR5A 2BE5D 4KDLA 2CW0D 3X2LA 2NAPA 2PNWA 3X2JA 1PYUB 4AZDA 1PQEA 2EEOB 2VPWA 3IR6A 4C2MA 2VPZA 1KQFA 3CZBA 2C45A 1ZC1A 1ZYRD 1FDIA 2Y0SA 3HKZA 1VC3B 4AAYA 2KI8A 5B6CA 3GTPA 1SFOA 2GAEA 5GM9A 5C18A 5DYIA 1E60A 3TIWA 2AE0X 2JIPA 1SMYD 1YNJD 3X2HA 3QQ7A 3GTQA 1YNND 2BH0A 2VPYA 2KQAA 4GA5A 4JS7A 2A69D 5GLFA 1S3SA 5H4UA 2VUMA 5DYGA 1UHDA 1Y1WA 1H5NA 4AONB 2NVXA 1WCMA 2G5DA 2R92A 1G8JA 2JA7A 2R93A 3X2NA 2NVYA 5EPPA 4KLNA 1QCSA 5T5MD 1I3QA 3QQ8A 2JIRA 1H0HA 4FERA 3HU2A 4KDIA 1CZ5A 4FG2A 4DMRA 2ENGA 1L8FA 2PMZA 2A6HD 2JA6A 3GTJA 5FTNA 4NOHA 3X2GA 3ENGA 1CZ4A 1TWHA 2JIMA 3PLXB 2E2IA 2PICA 3GTKA 1TWGA 1SIWA 1TMOA 2WB1A 5T5ID 3SULA 1OA9A 2JIQA 3FKIA 2PJJA 3O5AA 4ZM7A 2V45A 4L48A 5GLYA 1TWCA 1FDOA 1DMRA 1AW8B 3ML1A 2E7ZA 4D7ZB 3TM7B 3SUKA 3IR7A 4KO8A 1KQGA 1OGYA 1QDNA 3HU1A 1E5VA 1CR5A 1PT0A 1PQFA
chains in the Genus database with same CATH topology
1Y4ZA 3QWZA 2NYAA 4AOKB 2YU9A 2WAQA 3GTLA 2V3VA 2R7ZA 3GTGA 2IV2X 2G6GA 4CS0A 2JIOA 3H0GA 4RV0A 4GA6A 1E32A 2A68D 1E61A 4KODA 5FTKA 3CQZA 1Y1VA 5FTMA 4AYBA 1AA6A 1IW7D 2A6ED 5C1BA 2O5JD 1K83A 3QC8A 1PYQA 5FTLA 3CF2A 3HU3A 5FTJA 1PT1A 1UHEA 1Q16A 1Y5IA 3GTMA 1R9TA 2DMRA 1YLEA 1TWAA 2PJHB 2PI8A 1EU1A 1I50A 3OUGA 1PPYA 1E18A 4CRYG 4QIWA 1R7RA 1R27A 1WLFA 2YUJA 2VPXA 1G8KA 3GTOA 2B63A 2E2HA 1PQHA 2JA5A 1DMSA 4CRZA 1TWFA 3DMRA 3IR5A 2BE5D 4KDLA 2CW0D 2NAPA 2PNWA 4AZDA 1PYUB 1PQEA 2EEOB 2VPWA 3IR6A 4C2MA 2VPZA 1KQFA 3CZBA 2C45A 1ZC1A 1ZYRD 1FDIA 2Y0SA 3HKZA 1VC3B 4AAYA 2KI8A 5B6CA 3GTPA 1SFOA 2GAEA 5C18A 5DYIA 1E60A 3TIWA 2AE0X 2JIPA 1SMYD 1YNJD 3GTQA 3QQ7A 1YNND 2VPYA 5GLFA 4GA5A 2A69D 1S3SA 2VUMA 5DYGA 1UHDA 1Y1WA 1H5NA 4AONB 2NVXA 1WCMA 2G5DA 2R92A 1G8JA 2JA7A 2R93A 2NVYA 5EPPA 4KLNA 1QCSA 5T5MD 1I3QA 3QQ8A 2JIRA 1H0HA 3HU2A 4KDIA 1CZ5A 4DMRA 2PMZA 2A6HD 2JA6A 3GTJA 5FTNA 4NOHA 1CZ4A 1TWHA 2JIMA 3PLXB 2E2IA 2PICA 3GTKA 1TWGA 1SIWA 1TMOA 2WB1A 5T5ID 2JIQA 3FKIA 2PJJA 3O5AA 2V45A 1TWCA 1FDOA 1DMRA 1AW8B 3ML1A 2E7ZA 4D7ZB 3TM7B 3IR7A 4KO8A 1KQGA 1OGYA 1QDNA 3HU1A 1E5VA 1CR5A 1PT0A 1PQFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Y4Z A;  3QWZ A;  2NYA A;  4AOK B;  2YU9 A;  2WAQ A;  3GTL A;  2V3V A;  2R7Z A;  3GTG A;  2IV2 X;  4CS0 A;  2JIO A;  3H0G A;  4RV0 A;  4GA6 A;  1E32 A;  1E61 A;  4KOD A;  5FTK A;  3CQZ A;  1Y1V A;  5FTM A;  4AYB A;  1AA6 A;  1IW7 D;  5C1B A;  1K83 A;  3QC8 A;  1PYQ A;  5FTL A;  3CF2 A;  3HU3 A;  5FTJ A;  1PT1 A;  1UHE A;  1Q16 A;  1Y5I A;  3GTM A;  1R9T A;  2DMR A;  1YLE A;  1TWA A;  2PJH B;  1EU1 A;  1I50 A;  3OUG A;  1PPY A;  1E18 A;  4CRY G;  4QIW A;  1R7R A;  1R27 A;  1WLF A;  2VPX A;  1G8K A;  3GTO A;  2B63 A;  2E2H A;  1PQH A;  2JA5 A;  1DMS A;  4CRZ A;  1TWF A;  3DMR A;  3IR5 A;  4KDL A;  2NAP A;  4AZD A;  1PYU B;  1PQE A;  2EEO B;  2VPW A;  3IR6 A;  4C2M A;  2VPZ A;  1KQF A;  2C45 A;  1FDI A;  2Y0S A;  3HKZ A;  4AAY A;  5B6C A;  1VC3 B;  3GTP A;  2KI8 A;  1SFO A;  5C18 A;  5DYI A;  1E60 A;  3TIW A;  2JIP A;  3GTQ A;  3QQ7 A;  2VPY A;  5GLF A;  4GA5 A;  1S3S A;  2VUM A;  5DYG A;  1UHD A;  1Y1W A;  1H5N A;  4AON B;  2NVX A;  1WCM A;  2R92 A;  1G8J A;  2JA7 A;  2R93 A;  2NVY A;  5EPP A;  4KLN A;  1QCS A;  5T5M D;  1I3Q A;  3QQ8 A;  2JIR A;  1H0H A;  3HU2 A;  4KDI A;  1CZ5 A;  4DMR A;  2PMZ A;  2JA6 A;  3GTJ A;  5FTN A;  1CZ4 A;  1TWH A;  2JIM A;  3PLX B;  2E2I A;  3GTK A;  1TWG A;  1SIW A;  1TMO A;  2WB1 A;  5T5I D;  2JIQ A;  3FKI A;  3O5A A;  2V45 A;  1TWC A;  1FDO A;  1DMR A;  1AW8 B;  3ML1 A;  2E7Z A;  4D7Z B;  3TM7 B;  3IR7 A;  4KO8 A;  1KQG A;  1OGY A;  1QDN A;  3HU1 A;  1E5V A;  1CR5 A;  1PT0 A;  1PQF A; 
#chains in the Genus database with same CATH topology
 1Y4Z A;  3QWZ A;  2NYA A;  4AOK B;  4JP6 A;  2WAQ A;  3SUM A;  2YU9 A;  3GTL A;  2V3V A;  2R7Z A;  3GTG A;  2IV2 X;  2G6G A;  4CS0 A;  2JIO A;  3H0G A;  4RV0 A;  4GA6 A;  1E32 A;  2A68 D;  1OA7 A;  1E61 A;  4KOD A;  5FTK A;  4JP7 A;  3CQZ A;  1Y1V A;  4FFT A;  5FTM A;  3X2O A;  4AYB A;  1AA6 A;  1IW7 D;  2A6E D;  3D30 A;  5C1B A;  2O5J D;  1K83 A;  3QC8 A;  1PYQ A;  5FTL A;  3CF2 A;  3HU3 A;  5FTJ A;  3X2I A;  1PT1 A;  1UHE A;  1Q16 A;  1Y5I A;  3GTM A;  3X2K A;  4FG4 A;  1BW3 A;  1R9T A;  2DMR A;  1YLE A;  1TWA A;  1N10 A;  2PJH B;  2PI8 A;  3SUJ A;  1EU1 A;  1I50 A;  1BW4 A;  4AVR A;  3OUG A;  4JCW A;  3X2M A;  1PPY A;  1E18 A;  4CRY G;  4QIW A;  1R7R A;  1R27 A;  1WLF A;  2YUJ A;  3X2P A;  2VPX A;  1G8K A;  3M3G A;  5GLX A;  4ENG A;  3GTO A;  1WC2 A;  2E2H A;  4JJO A;  2B63 A;  2HCZ X;  1PQH A;  2JA5 A;  1DMS A;  4CRZ A;  1HD5 A;  1TWF A;  3DMR A;  3IR5 A;  2BE5 D;  4KDL A;  2CW0 D;  3X2L A;  2NAP A;  2PNW A;  3X2J A;  1PYU B;  4AZD A;  1PQE A;  2EEO B;  2VPW A;  3IR6 A;  4C2M A;  2VPZ A;  1KQF A;  3CZB A;  2C45 A;  1ZC1 A;  1ZYR D;  1FDI A;  2Y0S A;  3HKZ A;  1VC3 B;  4AAY A;  2KI8 A;  5B6C A;  3GTP A;  1SFO A;  2GAE A;  5GM9 A;  5C18 A;  5DYI A;  1E60 A;  3TIW A;  2AE0 X;  2JIP A;  1SMY D;  1YNJ D;  3X2H A;  3QQ7 A;  3GTQ A;  1YNN D;  2BH0 A;  2VPY A;  2KQA A;  4GA5 A;  4JS7 A;  2A69 D;  5GLF A;  1S3S A;  5H4U A;  2VUM A;  5DYG A;  1UHD A;  1Y1W A;  1H5N A;  4AON B;  2NVX A;  1WCM A;  2G5D A;  2R92 A;  1G8J A;  2JA7 A;  2R93 A;  3X2N A;  2NVY A;  5EPP A;  4KLN A;  1QCS A;  5T5M D;  1I3Q A;  3QQ8 A;  2JIR A;  1H0H A;  4FER A;  3HU2 A;  4KDI A;  1CZ5 A;  4FG2 A;  4DMR A;  2ENG A;  1L8F A;  2PMZ A;  2A6H D;  2JA6 A;  3GTJ A;  5FTN A;  4NOH A;  3X2G A;  3ENG A;  1CZ4 A;  1TWH A;  2JIM A;  3PLX B;  2E2I A;  2PIC A;  3GTK A;  1TWG A;  1SIW A;  1TMO A;  2WB1 A;  5T5I D;  3SUL A;  1OA9 A;  2JIQ A;  3FKI A;  2PJJ A;  3O5A A;  4ZM7 A;  2V45 A;  4L48 A;  5GLY A;  1TWC A;  1FDO A;  1DMR A;  1AW8 B;  3ML1 A;  2E7Z A;  4D7Z B;  3TM7 B;  3SUK A;  3IR7 A;  4KO8 A;  1KQG A;  1OGY A;  1QDN A;  3HU1 A;  1E5V A;  1CR5 A;  1PT0 A;  1PQF A; 
#chains in the Genus database with same CATH homology
 1Y4Z A;  3QWZ A;  2NYA A;  4AOK B;  2YU9 A;  2WAQ A;  3GTL A;  2V3V A;  2R7Z A;  3GTG A;  2IV2 X;  2G6G A;  4CS0 A;  2JIO A;  3H0G A;  4RV0 A;  4GA6 A;  1E32 A;  2A68 D;  1E61 A;  4KOD A;  5FTK A;  3CQZ A;  1Y1V A;  5FTM A;  4AYB A;  1AA6 A;  1IW7 D;  2A6E D;  5C1B A;  2O5J D;  1K83 A;  3QC8 A;  1PYQ A;  5FTL A;  3CF2 A;  3HU3 A;  5FTJ A;  1PT1 A;  1UHE A;  1Q16 A;  1Y5I A;  3GTM A;  1R9T A;  2DMR A;  1YLE A;  1TWA A;  2PJH B;  2PI8 A;  1EU1 A;  1I50 A;  3OUG A;  1PPY A;  1E18 A;  4CRY G;  4QIW A;  1R7R A;  1R27 A;  1WLF A;  2YUJ A;  2VPX A;  1G8K A;  3GTO A;  2B63 A;  2E2H A;  1PQH A;  2JA5 A;  1DMS A;  4CRZ A;  1TWF A;  3DMR A;  3IR5 A;  2BE5 D;  4KDL A;  2CW0 D;  2NAP A;  2PNW A;  4AZD A;  1PYU B;  1PQE A;  2EEO B;  2VPW A;  3IR6 A;  4C2M A;  2VPZ A;  1KQF A;  3CZB A;  2C45 A;  1ZC1 A;  1ZYR D;  1FDI A;  2Y0S A;  3HKZ A;  1VC3 B;  4AAY A;  2KI8 A;  5B6C A;  3GTP A;  1SFO A;  2GAE A;  5C18 A;  5DYI A;  1E60 A;  3TIW A;  2AE0 X;  2JIP A;  1SMY D;  1YNJ D;  3GTQ A;  3QQ7 A;  1YNN D;  2VPY A;  5GLF A;  4GA5 A;  2A69 D;  1S3S A;  2VUM A;  5DYG A;  1UHD A;  1Y1W A;  1H5N A;  4AON B;  2NVX A;  1WCM A;  2G5D A;  2R92 A;  1G8J A;  2JA7 A;  2R93 A;  2NVY A;  5EPP A;  4KLN A;  1QCS A;  5T5M D;  1I3Q A;  3QQ8 A;  2JIR A;  1H0H A;  3HU2 A;  4KDI A;  1CZ5 A;  4DMR A;  2PMZ A;  2A6H D;  2JA6 A;  3GTJ A;  5FTN A;  4NOH A;  1CZ4 A;  1TWH A;  2JIM A;  3PLX B;  2E2I A;  2PIC A;  3GTK A;  1TWG A;  1SIW A;  1TMO A;  2WB1 A;  5T5I D;  2JIQ A;  3FKI A;  2PJJ A;  3O5A A;  2V45 A;  1TWC A;  1FDO A;  1DMR A;  1AW8 B;  3ML1 A;  2E7Z A;  4D7Z B;  3TM7 B;  3IR7 A;  4KO8 A;  1KQG A;  1OGY A;  1QDN A;  3HU1 A;  1E5V A;  1CR5 A;  1PT0 A;  1PQF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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