2EEOB

Crystal structure of t.th. hb8 l-aspartate-alpha-decarboxylase complexed with fumarate
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
95
structure length
95
Chain Sequence
VTVDQDLLDAAGILPFEQVDIYDITNGARLTTYALPGERGSGVIGINGAAAHLVKPGDLVILVAYGVFDEEEARNLKPTVVLVDERNRILEVRKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of T.th. HB8 L-Aspartate-alpha-Decarboxylase
rcsb
molecule tags Lyase
source organism Thermus thermophilus
molecule keywords Aspartate 1-decarboxylase
total genus 20
structure length 95
sequence length 95
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2007-02-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 2eeoB00
1CZ4A 1PT0A 3TIWA 2JIMA 2E7ZA 1QCSA 2VPZA 2WAQA 1WLFA 1K83A 1TWFA 1G8KA 1UHDA 5FTJA 4AZDA 3GTOA 3GTQA 3CQZA 4QIWA 1TWHA 1FDOA 3QC8A 4CRYG 1R27A 5DYGA 5FTMA 4AOKB 1TWAA 5T5MD 1E60A 2JIQA 3HU3A 3GTMA 2NVXA 3GTKA 2IV2X 1R7RA 4D7ZB 2VPYA 5FTNA 1H5NA 3H0GA 4C2MA 2JIRA 3GTLA 2C45A 4KO8A 2V45A 2NYAA 1IW7D 3IR7A 2R7ZA 1KQGA 2E2IA 1PYUB 3HKZA 1VC3B 3IR6A 3TM7B 5C1BA 3CF2A 2JIPA 3O5AA 1OGYA 2DMRA 3QWZA 2JIOA 1PQHA 3PLXB 1I50A 2JA7A 2NAPA 4GA5A 2NVYA 5DYIA 1CZ5A 2Y0SA 4DMRA 1I3QA 2YU9A 1EU1A 1TMOA 2WB1A 4CS0A 1DMRA 1E5VA 1PT1A 2PMZA 2KI8A 2VPWA 1SFOA 2VUMA 5FTLA 3OUGA 4KDIA 1KQFA 1QDNA 4KLNA 1Y4ZA 1UHEA 1Q16A 2R92A 3ML1A 3DMRA 5B6CA 1PYQA 5FTKA 2EEOB 3GTGA 1PPYA 1YLEA 2V3VA 2JA6A 1E61A 1PQEA 2PJHB 4GA6A 2E2HA 3FKIA 1AW8B 3GTPA 3HU2A 3GTJA 1G8JA 5EPPA 4AYBA 3HU1A 5GLFA 1S3SA 1E32A 4AONB 1E18A 1PQFA 1Y1WA 2B63A 1WCMA 1Y1VA 2JA5A 4CRZA 3QQ7A 4KDLA 2R93A 1FDIA 4RV0A 1H0HA 1Y5IA 2VPXA 5T5ID 1CR5A 1AA6A 3QQ8A 4AAYA 1TWCA 1R9TA 3IR5A 1DMSA 1SIWA 5C18A 1TWGA 4KODA
chains in the Genus database with same CATH superfamily
1CZ4A 1PT0A 2PNWA 3TIWA 2JIMA 2E7ZA 3X2JA 1QCSA 2VPZA 2WAQA 1OA7A 1WLFA 2G6GA 1K83A 1TWFA 1G8KA 3CZBA 4JP6A 1UHDA 2PICA 2A69D 5FTJA 1ZYRD 4AZDA 1HD5A 3GTOA 3GTQA 3CQZA 4QIWA 1TWHA 1FDOA 2YUJA 3QC8A 1R27A 4CRYG 5DYGA 5FTMA 4AOKB 1TWAA 4ZM7A 5T5MD 1E60A 2JIQA 3HU3A 3GTMA 3SULA 2NVXA 3GTKA 2IV2X 1R7RA 4D7ZB 2VPYA 5FTNA 1H5NA 3H0GA 4C2MA 2JIRA 3GTLA 4JCWA 2C45A 4KO8A 2V45A 2BE5D 2NYAA 1IW7D 1ZC1A 3IR7A 2R7ZA 1KQGA 2E2IA 1PYUB 3HKZA 1VC3B 3IR6A 3TM7B 5C1BA 3CF2A 2JIPA 3O5AA 1OGYA 2DMRA 3QWZA 4FERA 3SUKA 3X2NA 2JIOA 1PQHA 3PLXB 1I50A 2JA7A 2NAPA 5GLYA 4GA5A 1YNJD 2NVYA 5DYIA 1CZ5A 2Y0SA 4DMRA 1I3QA 2YU9A 1EU1A 4ENGA 1TMOA 2WB1A 4CS0A 1DMRA 1E5VA 1PT1A 2PMZA 2KI8A 2VPWA 1SFOA 2VUMA 5FTLA 2G5DA 1L8FA 3OUGA 5GM9A 1WC2A 4KDIA 1KQFA 4FG4A 1QDNA 4KLNA 1Y4ZA 1UHEA 1YNND 2KQAA 4JS7A 1Q16A 2R92A 3ML1A 2HCZX 3DMRA 4FG2A 3SUJA 5B6CA 1PYQA 1BW3A 5FTKA 2EEOB 3X2OA 1PPYA 1YLEA 2BH0A 3M3GA 2V3VA 4AVRA 3GTGA 2JA6A 1E61A 2A6HD 1PQEA 2PJHB 4GA6A 2E2HA 2CW0D 3FKIA 2PJJA 1AW8B 3GTPA 3HU2A 3GTJA 1G8JA 2GAEA 3ENGA 5H4UA 1OA9A 5EPPA 4AYBA 2PI8A 3HU1A 5GLFA 1S3SA 1E32A 3X2KA 4AONB 1BW4A 1E18A 1PQFA 3X2PA 2A6ED 1Y1WA 3X2MA 2B63A 1WCMA 4JP7A 2O5JD 3SUMA 1Y1VA 2JA5A 1SMYD 3D30A 3QQ7A 4KDLA 4CRZA 5GLXA 2R93A 1FDIA 4FFTA 4RV0A 1H0HA 2AE0X 1Y5IA 2VPXA 4JJOA 5T5ID 2ENGA 1CR5A 1AA6A 4L48A 1N10A 3QQ8A 4AAYA 1TWCA 4NOHA 3X2IA 3X2LA 1R9TA 3X2GA 3IR5A 1DMSA 1SIWA 2A68D 5C18A 1TWGA 3X2HA 4KODA
chains in the Genus database with same CATH topology
1CZ4A 1PT0A 2PNWA 3TIWA 2JIMA 2E7ZA 1QCSA 2VPZA 2WAQA 1WLFA 2G6GA 1K83A 1TWFA 1G8KA 3CZBA 1UHDA 2PICA 2A69D 5FTJA 1ZYRD 4AZDA 3GTOA 3GTQA 3CQZA 4QIWA 1TWHA 1FDOA 2YUJA 3QC8A 1R27A 4CRYG 5DYGA 5FTMA 4AOKB 1TWAA 5T5MD 1E60A 2JIQA 3HU3A 3GTMA 2NVXA 3GTKA 2IV2X 1R7RA 4D7ZB 2VPYA 5FTNA 1H5NA 3H0GA 4C2MA 2JIRA 3GTLA 2C45A 4KO8A 2V45A 2BE5D 2NYAA 1IW7D 1ZC1A 3IR7A 2R7ZA 1KQGA 2E2IA 1PYUB 3HKZA 1VC3B 3IR6A 3TM7B 5C1BA 3CF2A 2JIPA 3O5AA 1OGYA 2DMRA 3QWZA 2JIOA 1PQHA 3PLXB 1I50A 2JA7A 2NAPA 4GA5A 1YNJD 2NVYA 5DYIA 1CZ5A 2Y0SA 4DMRA 1I3QA 2YU9A 1EU1A 1TMOA 2WB1A 4CS0A 1DMRA 1E5VA 1PT1A 2PMZA 2KI8A 2VPWA 1SFOA 2VUMA 5FTLA 2G5DA 3OUGA 4KDIA 1KQFA 1QDNA 4KLNA 1Y4ZA 1UHEA 1YNND 1Q16A 2R92A 3ML1A 3DMRA 5B6CA 1PYQA 5FTKA 2EEOB 3GTGA 1PPYA 1YLEA 2V3VA 2JA6A 1E61A 2A6HD 1PQEA 2PJHB 4GA6A 2E2HA 2CW0D 3FKIA 2PJJA 1AW8B 3GTPA 3HU2A 3GTJA 1G8JA 2GAEA 5EPPA 4AYBA 2PI8A 3HU1A 5GLFA 1S3SA 1E32A 4AONB 1E18A 1PQFA 2A6ED 1Y1WA 2B63A 1WCMA 2O5JD 1Y1VA 2JA5A 1SMYD 4CRZA 3QQ7A 4KDLA 2R93A 1FDIA 4RV0A 1H0HA 2AE0X 1Y5IA 2VPXA 5T5ID 1CR5A 1AA6A 3QQ8A 4AAYA 1TWCA 4NOHA 1R9TA 3IR5A 1DMSA 1SIWA 2A68D 5C18A 1TWGA 4KODA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CZ4 A;  1PT0 A;  3TIW A;  2JIM A;  2E7Z A;  1QCS A;  2VPZ A;  2WAQ A;  1WLF A;  1K83 A;  1TWF A;  1G8K A;  1UHD A;  5FTJ A;  4AZD A;  3GTO A;  3GTQ A;  3CQZ A;  4QIW A;  1TWH A;  1FDO A;  3QC8 A;  4CRY G;  1R27 A;  5DYG A;  5FTM A;  4AOK B;  1TWA A;  5T5M D;  1E60 A;  2JIQ A;  3HU3 A;  3GTM A;  2NVX A;  3GTK A;  2IV2 X;  1R7R A;  4D7Z B;  2VPY A;  5FTN A;  1H5N A;  3H0G A;  4C2M A;  2JIR A;  3GTL A;  2C45 A;  4KO8 A;  2V45 A;  2NYA A;  1IW7 D;  3IR7 A;  2R7Z A;  1KQG A;  2E2I A;  1PYU B;  3HKZ A;  1VC3 B;  3IR6 A;  3TM7 B;  5C1B A;  3CF2 A;  2JIP A;  3O5A A;  1OGY A;  2DMR A;  3QWZ A;  2JIO A;  1PQH A;  3PLX B;  1I50 A;  2JA7 A;  2NAP A;  4GA5 A;  2NVY A;  5DYI A;  1CZ5 A;  2Y0S A;  4DMR A;  1I3Q A;  2YU9 A;  1EU1 A;  1TMO A;  2WB1 A;  4CS0 A;  1DMR A;  1E5V A;  1PT1 A;  2PMZ A;  2KI8 A;  2VPW A;  1SFO A;  2VUM A;  5FTL A;  3OUG A;  4KDI A;  1KQF A;  1QDN A;  4KLN A;  1Y4Z A;  1UHE A;  1Q16 A;  2R92 A;  3ML1 A;  3DMR A;  5B6C A;  1PYQ A;  5FTK A;  2EEO B;  3GTG A;  1PPY A;  1YLE A;  2V3V A;  2JA6 A;  1E61 A;  1PQE A;  2PJH B;  4GA6 A;  2E2H A;  3FKI A;  1AW8 B;  3GTP A;  3HU2 A;  3GTJ A;  1G8J A;  5EPP A;  4AYB A;  3HU1 A;  5GLF A;  1S3S A;  1E32 A;  4AON B;  1E18 A;  1PQF A;  1Y1W A;  2B63 A;  1WCM A;  1Y1V A;  2JA5 A;  4CRZ A;  3QQ7 A;  4KDL A;  2R93 A;  1FDI A;  4RV0 A;  1H0H A;  1Y5I A;  2VPX A;  5T5I D;  1CR5 A;  1AA6 A;  3QQ8 A;  4AAY A;  1TWC A;  1R9T A;  3IR5 A;  1DMS A;  1SIW A;  5C18 A;  1TWG A;  4KOD A; 
#chains in the Genus database with same CATH topology
 1CZ4 A;  1PT0 A;  2PNW A;  3TIW A;  2JIM A;  2E7Z A;  3X2J A;  1QCS A;  2VPZ A;  2WAQ A;  1OA7 A;  1WLF A;  2G6G A;  1K83 A;  1TWF A;  1G8K A;  3CZB A;  4JP6 A;  1UHD A;  2PIC A;  2A69 D;  5FTJ A;  1ZYR D;  4AZD A;  1HD5 A;  3GTO A;  3GTQ A;  3CQZ A;  4QIW A;  1TWH A;  1FDO A;  2YUJ A;  3QC8 A;  1R27 A;  4CRY G;  5DYG A;  5FTM A;  4AOK B;  1TWA A;  4ZM7 A;  5T5M D;  1E60 A;  2JIQ A;  3HU3 A;  3GTM A;  3SUL A;  2NVX A;  3GTK A;  2IV2 X;  1R7R A;  4D7Z B;  2VPY A;  5FTN A;  1H5N A;  3H0G A;  4C2M A;  2JIR A;  3GTL A;  4JCW A;  2C45 A;  4KO8 A;  2V45 A;  2BE5 D;  2NYA A;  1IW7 D;  1ZC1 A;  3IR7 A;  2R7Z A;  1KQG A;  2E2I A;  1PYU B;  3HKZ A;  1VC3 B;  3IR6 A;  3TM7 B;  5C1B A;  3CF2 A;  2JIP A;  3O5A A;  1OGY A;  2DMR A;  3QWZ A;  4FER A;  3SUK A;  3X2N A;  2JIO A;  1PQH A;  3PLX B;  1I50 A;  2JA7 A;  2NAP A;  5GLY A;  4GA5 A;  1YNJ D;  2NVY A;  5DYI A;  1CZ5 A;  2Y0S A;  4DMR A;  1I3Q A;  2YU9 A;  1EU1 A;  4ENG A;  1TMO A;  2WB1 A;  4CS0 A;  1DMR A;  1E5V A;  1PT1 A;  2PMZ A;  2KI8 A;  2VPW A;  1SFO A;  2VUM A;  5FTL A;  2G5D A;  1L8F A;  3OUG A;  5GM9 A;  1WC2 A;  4KDI A;  1KQF A;  4FG4 A;  1QDN A;  4KLN A;  1Y4Z A;  1UHE A;  1YNN D;  2KQA A;  4JS7 A;  1Q16 A;  2R92 A;  3ML1 A;  2HCZ X;  3DMR A;  4FG2 A;  3SUJ A;  5B6C A;  1PYQ A;  1BW3 A;  5FTK A;  2EEO B;  3X2O A;  1PPY A;  1YLE A;  2BH0 A;  3M3G A;  2V3V A;  4AVR A;  3GTG A;  2JA6 A;  1E61 A;  2A6H D;  1PQE A;  2PJH B;  4GA6 A;  2E2H A;  2CW0 D;  3FKI A;  2PJJ A;  1AW8 B;  3GTP A;  3HU2 A;  3GTJ A;  1G8J A;  2GAE A;  3ENG A;  5H4U A;  1OA9 A;  5EPP A;  4AYB A;  2PI8 A;  3HU1 A;  5GLF A;  1S3S A;  1E32 A;  3X2K A;  4AON B;  1BW4 A;  1E18 A;  1PQF A;  3X2P A;  2A6E D;  1Y1W A;  3X2M A;  2B63 A;  1WCM A;  4JP7 A;  2O5J D;  3SUM A;  1Y1V A;  2JA5 A;  1SMY D;  3D30 A;  3QQ7 A;  4KDL A;  4CRZ A;  5GLX A;  2R93 A;  1FDI A;  4FFT A;  4RV0 A;  1H0H A;  2AE0 X;  1Y5I A;  2VPX A;  4JJO A;  5T5I D;  2ENG A;  1CR5 A;  1AA6 A;  4L48 A;  1N10 A;  3QQ8 A;  4AAY A;  1TWC A;  4NOH A;  3X2I A;  3X2L A;  1R9T A;  3X2G A;  3IR5 A;  1DMS A;  1SIW A;  2A68 D;  5C18 A;  1TWG A;  3X2H A;  4KOD A; 
#chains in the Genus database with same CATH homology
 1CZ4 A;  1PT0 A;  2PNW A;  3TIW A;  2JIM A;  2E7Z A;  1QCS A;  2VPZ A;  2WAQ A;  1WLF A;  2G6G A;  1K83 A;  1TWF A;  1G8K A;  3CZB A;  1UHD A;  2PIC A;  2A69 D;  5FTJ A;  1ZYR D;  4AZD A;  3GTO A;  3GTQ A;  3CQZ A;  4QIW A;  1TWH A;  1FDO A;  2YUJ A;  3QC8 A;  1R27 A;  4CRY G;  5DYG A;  5FTM A;  4AOK B;  1TWA A;  5T5M D;  1E60 A;  2JIQ A;  3HU3 A;  3GTM A;  2NVX A;  3GTK A;  2IV2 X;  1R7R A;  4D7Z B;  2VPY A;  5FTN A;  1H5N A;  3H0G A;  4C2M A;  2JIR A;  3GTL A;  2C45 A;  4KO8 A;  2V45 A;  2BE5 D;  2NYA A;  1IW7 D;  1ZC1 A;  3IR7 A;  2R7Z A;  1KQG A;  2E2I A;  1PYU B;  3HKZ A;  1VC3 B;  3IR6 A;  3TM7 B;  5C1B A;  3CF2 A;  2JIP A;  3O5A A;  1OGY A;  2DMR A;  3QWZ A;  2JIO A;  1PQH A;  3PLX B;  1I50 A;  2JA7 A;  2NAP A;  4GA5 A;  1YNJ D;  2NVY A;  5DYI A;  1CZ5 A;  2Y0S A;  4DMR A;  1I3Q A;  2YU9 A;  1EU1 A;  1TMO A;  2WB1 A;  4CS0 A;  1DMR A;  1E5V A;  1PT1 A;  2PMZ A;  2KI8 A;  2VPW A;  1SFO A;  2VUM A;  5FTL A;  2G5D A;  3OUG A;  4KDI A;  1KQF A;  1QDN A;  4KLN A;  1Y4Z A;  1UHE A;  1YNN D;  1Q16 A;  2R92 A;  3ML1 A;  3DMR A;  5B6C A;  1PYQ A;  5FTK A;  2EEO B;  3GTG A;  1PPY A;  1YLE A;  2V3V A;  2JA6 A;  1E61 A;  2A6H D;  1PQE A;  2PJH B;  4GA6 A;  2E2H A;  2CW0 D;  3FKI A;  2PJJ A;  1AW8 B;  3GTP A;  3HU2 A;  3GTJ A;  1G8J A;  2GAE A;  5EPP A;  4AYB A;  2PI8 A;  3HU1 A;  5GLF A;  1S3S A;  1E32 A;  4AON B;  1E18 A;  1PQF A;  2A6E D;  1Y1W A;  2B63 A;  1WCM A;  2O5J D;  1Y1V A;  2JA5 A;  1SMY D;  4CRZ A;  3QQ7 A;  4KDL A;  2R93 A;  1FDI A;  4RV0 A;  1H0H A;  2AE0 X;  1Y5I A;  2VPX A;  5T5I D;  1CR5 A;  1AA6 A;  3QQ8 A;  4AAY A;  1TWC A;  4NOH A;  1R9T A;  3IR5 A;  1DMS A;  1SIW A;  2A68 D;  5C18 A;  1TWG A;  4KOD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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