2LIZA

Nmr solution structure of c-terminal domain of sars-cov main protease in 2.5m urea
Total Genus 37

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
120
structure length
120
Chain Sequence
DRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Sars coronavirus
publication title NMR solution structure of C-terminal domain of SARS-CoV main protease in 2.5M urea
rcsb
molecule keywords 3C-like proteinase
total genus 37
structure length 120
sequence length 120
ec nomenclature ec 3.4.19.12: Ubiquitinyl hydrolase 1.
pdb deposition date 2011-09-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1840.10 Mainly Alpha Orthogonal Bundle main proteinase (3clpro) structure, domain 3 main proteinase (3clpro) structure, domain 3 2lizA00
4ZUHA 2YNBA 3VB5A 2V6NA 2ZU4A 3EBNA 3SZNA 4TWWA 4YOJA 4WMFA 5C3NA 1Q2WA 1Z1IA 3D23A 3EA8A 2GTBA 3SNCA 3V3MA 2K7XA 2GT8A 2VJ1A 4YOGA 3SN8A 4WY3A 3F9FA 4ZROA 1P9UA 3EAJA 2QCYA 3VB7A 2Z3EA 3E91A 2GZ7A 2Z9LA 1UK4A 2GZ8A 5C5NA 3TLOA 5B6OA 3AW0A 3F9EA 2ZU2A 3F9HA 3M3SA 2OP9A 3F9GA 4TWYA 1Z1JA 5HYOA 2YNAA 4MDSA 2Z9KA 2Z9GA 2BX3A 5C5OA 2BX4A 2AMPA 4WMEA 3SNEA 2A5AA 3AVZA 3IWMA 4HI3A 3EA7A 3AW1A 5EU8A 2C3SA 3TNTA 3M3TA 2ALVA 1P9SA 2GX4A 3VB3A 3TITA 2AMQA 3M3VA 4F49A 1UK3A 2Z3DA 2HOBA 4RSPA 4YLUA 2A5IA 2GZ9A 3TNSA 3SNAA 2Q6FA 4YO9A 2LIZA 2ZU5A 2QIQA 3D62A 2Q6DA 3ATWA 5GWZA 3VB6A 2AMDA 3VB4A 3FZDA 2A5KA 2DUCA 2Z9JA 2Q6GA 4XFQA 3SNBA 1UK2A 2Z94A 2PWXA 1LVOA 3SNDA 1WOFA 3EA9A 1UJ1A 2H2ZA 2QC2A 4YOIA 2GT7A 3TIUA 4WMDA 2Z3CA 2D2DA
chains in the Genus database with same CATH superfamily
4ZUHA 2YNBA 3VB5A 2V6NA 2ZU4A 3EBNA 3SZNA 4TWWA 4YOJA 4WMFA 5C3NA 1Q2WA 1Z1IA 3D23A 3EA8A 2GTBA 3SNCA 3V3MA 2K7XA 2GT8A 2VJ1A 4YOGA 3SN8A 4WY3A 3F9FA 4ZROA 1P9UA 3EAJA 2QCYA 3VB7A 2Z3EA 3E91A 2GZ7A 2Z9LA 1UK4A 2GZ8A 5C5NA 3TLOA 5B6OA 3AW0A 3F9EA 2ZU2A 3F9HA 3M3SA 2OP9A 3F9GA 4TWYA 1Z1JA 5HYOA 2YNAA 4MDSA 2Z9KA 2Z9GA 2BX3A 5C5OA 2BX4A 2AMPA 4WMEA 3SNEA 2A5AA 3AVZA 3IWMA 4HI3A 3EA7A 3AW1A 5EU8A 2C3SA 3TNTA 3M3TA 2ALVA 1P9SA 2GX4A 3VB3A 3TITA 2AMQA 3M3VA 4F49A 1UK3A 2Z3DA 2HOBA 4RSPA 4YLUA 2A5IA 2GZ9A 3TNSA 3SNAA 2Q6FA 4YO9A 2LIZA 2ZU5A 2QIQA 3D62A 2Q6DA 3ATWA 5GWZA 3VB6A 2AMDA 3VB4A 3FZDA 2A5KA 2DUCA 2Z9JA 2Q6GA 4XFQA 3SNBA 1UK2A 2Z94A 2PWXA 1LVOA 3SNDA 1WOFA 3EA9A 1UJ1A 2H2ZA 2QC2A 4YOIA 2GT7A 3TIUA 4WMDA 2Z3CA 2D2DA
chains in the Genus database with same CATH topology
4ZUHA 2YNBA 3VB5A 2V6NA 2ZU4A 3EBNA 3SZNA 4TWWA 4YOJA 4WMFA 5C3NA 1Q2WA 1Z1IA 3D23A 3EA8A 2GTBA 3SNCA 3V3MA 2K7XA 2GT8A 2VJ1A 4YOGA 3SN8A 4WY3A 3F9FA 4ZROA 1P9UA 3EAJA 2QCYA 3VB7A 2Z3EA 3E91A 2GZ7A 2Z9LA 1UK4A 2GZ8A 5C5NA 3TLOA 5B6OA 3AW0A 3F9EA 2ZU2A 3F9HA 3M3SA 2OP9A 3F9GA 4TWYA 1Z1JA 5HYOA 2YNAA 4MDSA 2Z9KA 2Z9GA 2BX3A 5C5OA 2BX4A 2AMPA 4WMEA 3SNEA 2A5AA 3AVZA 3IWMA 4HI3A 3EA7A 3AW1A 5EU8A 2C3SA 3TNTA 3M3TA 2ALVA 1P9SA 2GX4A 3VB3A 3TITA 2AMQA 3M3VA 4F49A 1UK3A 2Z3DA 2HOBA 4RSPA 4YLUA 2A5IA 2GZ9A 3TNSA 3SNAA 2Q6FA 4YO9A 2LIZA 2ZU5A 2QIQA 3D62A 2Q6DA 3ATWA 5GWZA 3VB6A 2AMDA 3VB4A 3FZDA 2A5KA 2DUCA 2Z9JA 2Q6GA 4XFQA 3SNBA 1UK2A 2Z94A 2PWXA 1LVOA 3SNDA 1WOFA 3EA9A 1UJ1A 2H2ZA 2QC2A 4YOIA 2GT7A 3TIUA 4WMDA 2Z3CA 2D2DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZUH A;  2YNB A;  3VB5 A;  2V6N A;  2ZU4 A;  3EBN A;  3SZN A;  4TWW A;  4YOJ A;  4WMF A;  5C3N A;  1Q2W A;  1Z1I A;  3D23 A;  3EA8 A;  2GTB A;  3SNC A;  3V3M A;  2K7X A;  2GT8 A;  2VJ1 A;  4YOG A;  3SN8 A;  4WY3 A;  3F9F A;  4ZRO A;  1P9U A;  3EAJ A;  2QCY A;  3VB7 A;  2Z3E A;  3E91 A;  2GZ7 A;  2Z9L A;  1UK4 A;  2GZ8 A;  5C5N A;  3TLO A;  5B6O A;  3AW0 A;  3F9E A;  2ZU2 A;  3F9H A;  3M3S A;  2OP9 A;  3F9G A;  4TWY A;  1Z1J A;  5HYO A;  2YNA A;  4MDS A;  2Z9K A;  2Z9G A;  2BX3 A;  5C5O A;  2BX4 A;  2AMP A;  4WME A;  3SNE A;  2A5A A;  3AVZ A;  3IWM A;  4HI3 A;  3EA7 A;  3AW1 A;  5EU8 A;  2C3S A;  3TNT A;  3M3T A;  2ALV A;  1P9S A;  2GX4 A;  3VB3 A;  3TIT A;  2AMQ A;  3M3V A;  4F49 A;  1UK3 A;  2Z3D A;  2HOB A;  4RSP A;  4YLU A;  2A5I A;  2GZ9 A;  3TNS A;  3SNA A;  2Q6F A;  4YO9 A;  2LIZ A;  2ZU5 A;  2QIQ A;  3D62 A;  2Q6D A;  3ATW A;  5GWZ A;  3VB6 A;  2AMD A;  3VB4 A;  3FZD A;  2A5K A;  2DUC A;  2Z9J A;  2Q6G A;  4XFQ A;  3SNB A;  1UK2 A;  2Z94 A;  2PWX A;  1LVO A;  3SND A;  1WOF A;  3EA9 A;  1UJ1 A;  2H2Z A;  2QC2 A;  4YOI A;  2GT7 A;  3TIU A;  4WMD A;  2Z3C A;  2D2D A; 
#chains in the Genus database with same CATH topology
 4ZUH A;  2YNB A;  3VB5 A;  2V6N A;  2ZU4 A;  3EBN A;  3SZN A;  4TWW A;  4YOJ A;  4WMF A;  5C3N A;  1Q2W A;  1Z1I A;  3D23 A;  3EA8 A;  2GTB A;  3SNC A;  3V3M A;  2K7X A;  2GT8 A;  2VJ1 A;  4YOG A;  3SN8 A;  4WY3 A;  3F9F A;  4ZRO A;  1P9U A;  3EAJ A;  2QCY A;  3VB7 A;  2Z3E A;  3E91 A;  2GZ7 A;  2Z9L A;  1UK4 A;  2GZ8 A;  5C5N A;  3TLO A;  5B6O A;  3AW0 A;  3F9E A;  2ZU2 A;  3F9H A;  3M3S A;  2OP9 A;  3F9G A;  4TWY A;  1Z1J A;  5HYO A;  2YNA A;  4MDS A;  2Z9K A;  2Z9G A;  2BX3 A;  5C5O A;  2BX4 A;  2AMP A;  4WME A;  3SNE A;  2A5A A;  3AVZ A;  3IWM A;  4HI3 A;  3EA7 A;  3AW1 A;  5EU8 A;  2C3S A;  3TNT A;  3M3T A;  2ALV A;  1P9S A;  2GX4 A;  3VB3 A;  3TIT A;  2AMQ A;  3M3V A;  4F49 A;  1UK3 A;  2Z3D A;  2HOB A;  4RSP A;  4YLU A;  2A5I A;  2GZ9 A;  3TNS A;  3SNA A;  2Q6F A;  4YO9 A;  2LIZ A;  2ZU5 A;  2QIQ A;  3D62 A;  2Q6D A;  3ATW A;  5GWZ A;  3VB6 A;  2AMD A;  3VB4 A;  3FZD A;  2A5K A;  2DUC A;  2Z9J A;  2Q6G A;  4XFQ A;  3SNB A;  1UK2 A;  2Z94 A;  2PWX A;  1LVO A;  3SND A;  1WOF A;  3EA9 A;  1UJ1 A;  2H2Z A;  2QC2 A;  4YOI A;  2GT7 A;  3TIU A;  4WMD A;  2Z3C A;  2D2D A; 
#chains in the Genus database with same CATH homology
 4ZUH A;  2YNB A;  3VB5 A;  2V6N A;  2ZU4 A;  3EBN A;  3SZN A;  4TWW A;  4YOJ A;  4WMF A;  5C3N A;  1Q2W A;  1Z1I A;  3D23 A;  3EA8 A;  2GTB A;  3SNC A;  3V3M A;  2K7X A;  2GT8 A;  2VJ1 A;  4YOG A;  3SN8 A;  4WY3 A;  3F9F A;  4ZRO A;  1P9U A;  3EAJ A;  2QCY A;  3VB7 A;  2Z3E A;  3E91 A;  2GZ7 A;  2Z9L A;  1UK4 A;  2GZ8 A;  5C5N A;  3TLO A;  5B6O A;  3AW0 A;  3F9E A;  2ZU2 A;  3F9H A;  3M3S A;  2OP9 A;  3F9G A;  4TWY A;  1Z1J A;  5HYO A;  2YNA A;  4MDS A;  2Z9K A;  2Z9G A;  2BX3 A;  5C5O A;  2BX4 A;  2AMP A;  4WME A;  3SNE A;  2A5A A;  3AVZ A;  3IWM A;  4HI3 A;  3EA7 A;  3AW1 A;  5EU8 A;  2C3S A;  3TNT A;  3M3T A;  2ALV A;  1P9S A;  2GX4 A;  3VB3 A;  3TIT A;  2AMQ A;  3M3V A;  4F49 A;  1UK3 A;  2Z3D A;  2HOB A;  4RSP A;  4YLU A;  2A5I A;  2GZ9 A;  3TNS A;  3SNA A;  2Q6F A;  4YO9 A;  2LIZ A;  2ZU5 A;  2QIQ A;  3D62 A;  2Q6D A;  3ATW A;  5GWZ A;  3VB6 A;  2AMD A;  3VB4 A;  3FZD A;  2A5K A;  2DUC A;  2Z9J A;  2Q6G A;  4XFQ A;  3SNB A;  1UK2 A;  2Z94 A;  2PWX A;  1LVO A;  3SND A;  1WOF A;  3EA9 A;  1UJ1 A;  2H2Z A;  2QC2 A;  4YOI A;  2GT7 A;  3TIU A;  4WMD A;  2Z3C A;  2D2D A; 
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