3M3GA

Crystal structure of sm1, an elicitor of plant defence responses from trichoderma virens.
Total Genus 38

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
120
structure length
120
Chain Sequence
DTVSYDTGYDNGSRSLNDVSCSDGPNGLETRYHWSTQGQIPRFPYIGGAAAVAGWNSASCGTCWKLQYSGHTIYVLAVDHAASGFNIALDAMNALTGGQAVQLGRVSATATQVPVKNCGL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (107-114)EMPTYO2 (81-136)S5 (103-105)TII2 (77-80)S1 (20-23)S3 (80-86)3H1 (25-28)TI5 (75-78)TI1 (29-32)3H3 (55-57)TI3 (58-61)TIV1 (37-40)TI2 (42-45)TII1 (72-75)AH1 (46-50)TI'1 (86-89)O1 (39-78)TVIa1 (60-63)S2 (64-67)TI4 (67-70)TVIII1 (68-71)S4 (89-98)TIV3 (99-102)AH3 (117-121)3H2 (34-36)TI'2 (114-117)Updating...
connected with : NaN
molecule tags Polysaccharide-binding protein
publication title Crystal structure of Sm1, an elicitor of plant defence responses from Trichoderma virens.
rcsb
molecule keywords Epl1 protein
total genus 38
structure length 120
sequence length 120
ec nomenclature
pdb deposition date 2010-03-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07249 Cerato-platanin Cerato-platanin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 3m3gA00
2PI8A 3D30A 3X2MA 2GAEA 3X2NA 5GM9A 4ENGA 4JCWA 3X2JA 2KQAA 4ZM7A 4FFTA 4FG4A 4JP7A 3M3GA 3ENGA 3X2LA 3X2OA 1N10A 3SUKA 1L8FA 3X2KA 2G6GA 4JJOA 5GLXA 1OA9A 3SUJA 4FG2A 1BW4A 2PNWA 2HCZX 2PICA 3X2PA 3CZBA 1WC2A 3SUMA 3X2GA 3X2HA 4AVRA 2BH0A 2PJJA 4FERA 3X2IA 4L48A 4JS7A 5H4UA 2AE0X 2G5DA 5GLYA 1OA7A 2ENGA 1BW3A 1HD5A 3SULA 4JP6A
chains in the Genus database with same CATH superfamily
1PQFA 2WAQA 2Y0SA 1E18A 1VC3B 3ML1A 4AZDA 4CS0A 1CZ5A 3TM7B 3X2NA 2R93A 2V3VA 5FTLA 3FKIA 3GTGA 5GLFA 4JP7A 3DMRA 3GTQA 3M3GA 3X2OA 1N10A 2VPZA 2VPYA 1L8FA 3SUKA 2G6GA 1WLFA 1PQEA 1TMOA 1AA6A 3O5AA 1ZC1A 1PPYA 2NYAA 2PICA 4CRYG 3CZBA 4RV0A 5FTNA 2CW0D 2PJJA 2PMZA 1K83A 4FERA 3TIWA 2A69D 4JS7A 5H4UA 1QDNA 2G5DA 5GLYA 1Y1WA 2YU9A 4KDIA 1R7RA 1Y4ZA 1E32A 4JP6A 5DYIA 2JA6A 1UHDA 1YLEA 3X2MA 3QQ7A 5C18A 4GA6A 5T5MD 4KLNA 1I3QA 2C45A 2VUMA 1E61A 3IR5A 3H0GA 1TWAA 3ENGA 3X2LA 2V45A 5GLXA 1OA9A 1R27A 1ZYRD 4FG2A 2PNWA 5FTJA 2A68D 2PJHB 3QC8A 3HKZA 4QIWA 2JIRA 3SUMA 1WC2A 3X2GA 1YNJD 2VPWA 3CF2A 1R9TA 1IW7D 1TWCA 3QWZA 5FTMA 1PT1A 4L48A 1CZ4A 1Y1VA 2JIOA 2IV2X 1H5NA 3HU3A 1H0HA 4AOKB 2KI8A 4CRZA 1HD5A 1BW3A 3GTKA 1DMSA 4C2MA 2B63A 2PI8A 5C1BA 3IR7A 2JIMA 2JA5A 2GAEA 2DMRA 1FDIA 1PT0A 4ENGA 4JCWA 2A6ED 1PYUB 1E60A 1KQFA 3X2JA 2JIPA 1CR5A 4FFTA 4FG4A 1PYQA 2R7ZA 2BE5D 2A6HD 1KQGA 4JJOA 2E2IA 1TWFA 1AW8B 1FDOA 3SUJA 1BW4A 5EPPA 2HCZX 4GA5A 5FTKA 5B6CA 1G8KA 1TWHA 2YUJA 4AVRA 1SFOA 2E2HA 1SIWA 1DMRA 2BH0A 4KO8A 3X2IA 3GTPA 4DMRA 1YNND 4AONB 1PQHA 2R92A 1QCSA 3QQ8A 2JA7A 4KODA 1OA7A 1WCMA 3CQZA 2ENGA 4AYBA 3SULA 5T5ID 1OGYA 3IR6A 3D30A 5GM9A 1E5VA 2KQAA 1I50A 4ZM7A 1EU1A 3GTOA 3HU2A 3X2KA 3OUGA 2E7ZA 4D7ZB 2NVYA 2NAPA 3X2PA 1SMYD 4KDLA 4NOHA 3X2HA 3PLXB 3GTJA 2JIQA 3HU1A 1Q16A 2NVXA 2VPXA 1TWGA 4AAYA 2WB1A 1Y5IA 1UHEA 1G8JA 1S3SA 2AE0X 3GTLA 2EEOB 2O5JD 3GTMA 5DYGA
chains in the Genus database with same CATH topology
2PI8A 3D30A 3X2MA 2GAEA 3X2NA 5GM9A 4ENGA 4JCWA 3X2JA 2KQAA 4ZM7A 4FFTA 4FG4A 4JP7A 3M3GA 3ENGA 3X2LA 3X2OA 1N10A 3SUKA 1L8FA 3X2KA 2G6GA 4JJOA 5GLXA 1OA9A 3SUJA 4FG2A 1BW4A 2PNWA 2HCZX 2PICA 3X2PA 3CZBA 1WC2A 3SUMA 3X2GA 3X2HA 4AVRA 2BH0A 2PJJA 4FERA 3X2IA 4L48A 4JS7A 5H4UA 2AE0X 2G5DA 5GLYA 1OA7A 2ENGA 1BW3A 1HD5A 3SULA 4JP6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PI8 A;  3D30 A;  3X2M A;  2GAE A;  3X2N A;  5GM9 A;  4ENG A;  4JCW A;  3X2J A;  2KQA A;  4ZM7 A;  4FFT A;  4FG4 A;  4JP7 A;  3M3G A;  3ENG A;  3X2L A;  3X2O A;  1N10 A;  3SUK A;  1L8F A;  3X2K A;  2G6G A;  4JJO A;  5GLX A;  1OA9 A;  3SUJ A;  4FG2 A;  1BW4 A;  2PNW A;  2HCZ X;  2PIC A;  3X2P A;  3CZB A;  1WC2 A;  3SUM A;  3X2G A;  3X2H A;  4AVR A;  2BH0 A;  2PJJ A;  4FER A;  3X2I A;  4L48 A;  4JS7 A;  5H4U A;  2AE0 X;  2G5D A;  5GLY A;  1OA7 A;  2ENG A;  1BW3 A;  1HD5 A;  3SUL A;  4JP6 A; 
#chains in the Genus database with same CATH topology
 1PQF A;  2WAQ A;  2Y0S A;  1E18 A;  1VC3 B;  3ML1 A;  4AZD A;  4CS0 A;  1CZ5 A;  3TM7 B;  3X2N A;  2R93 A;  2V3V A;  5FTL A;  3FKI A;  3GTG A;  5GLF A;  4JP7 A;  3DMR A;  3GTQ A;  3M3G A;  3X2O A;  1N10 A;  2VPZ A;  2VPY A;  1L8F A;  3SUK A;  2G6G A;  1WLF A;  1PQE A;  1TMO A;  1AA6 A;  3O5A A;  1ZC1 A;  1PPY A;  2NYA A;  2PIC A;  4CRY G;  3CZB A;  4RV0 A;  5FTN A;  2CW0 D;  2PJJ A;  2PMZ A;  1K83 A;  4FER A;  3TIW A;  2A69 D;  4JS7 A;  5H4U A;  1QDN A;  2G5D A;  5GLY A;  1Y1W A;  2YU9 A;  4KDI A;  1R7R A;  1Y4Z A;  1E32 A;  4JP6 A;  5DYI A;  2JA6 A;  1UHD A;  1YLE A;  3X2M A;  3QQ7 A;  5C18 A;  4GA6 A;  5T5M D;  4KLN A;  1I3Q A;  2C45 A;  2VUM A;  1E61 A;  3IR5 A;  3H0G A;  1TWA A;  3ENG A;  3X2L A;  2V45 A;  5GLX A;  1OA9 A;  1R27 A;  1ZYR D;  4FG2 A;  2PNW A;  5FTJ A;  2A68 D;  2PJH B;  3QC8 A;  3HKZ A;  4QIW A;  2JIR A;  3SUM A;  1WC2 A;  3X2G A;  1YNJ D;  2VPW A;  3CF2 A;  1R9T A;  1IW7 D;  1TWC A;  3QWZ A;  5FTM A;  1PT1 A;  4L48 A;  1CZ4 A;  1Y1V A;  2JIO A;  2IV2 X;  1H5N A;  3HU3 A;  1H0H A;  4AOK B;  2KI8 A;  4CRZ A;  1HD5 A;  1BW3 A;  3GTK A;  1DMS A;  4C2M A;  2B63 A;  2PI8 A;  5C1B A;  3IR7 A;  2JIM A;  2JA5 A;  2GAE A;  2DMR A;  1FDI A;  1PT0 A;  4ENG A;  4JCW A;  2A6E D;  1PYU B;  1E60 A;  1KQF A;  3X2J A;  2JIP A;  1CR5 A;  4FFT A;  4FG4 A;  1PYQ A;  2R7Z A;  2BE5 D;  2A6H D;  1KQG A;  4JJO A;  2E2I A;  1TWF A;  1AW8 B;  1FDO A;  3SUJ A;  1BW4 A;  5EPP A;  2HCZ X;  4GA5 A;  5FTK A;  5B6C A;  1G8K A;  1TWH A;  2YUJ A;  4AVR A;  1SFO A;  2E2H A;  1SIW A;  1DMR A;  2BH0 A;  4KO8 A;  3X2I A;  3GTP A;  4DMR A;  1YNN D;  4AON B;  1PQH A;  2R92 A;  1QCS A;  3QQ8 A;  2JA7 A;  4KOD A;  1OA7 A;  1WCM A;  3CQZ A;  2ENG A;  4AYB A;  3SUL A;  5T5I D;  1OGY A;  3IR6 A;  3D30 A;  5GM9 A;  1E5V A;  2KQA A;  1I50 A;  4ZM7 A;  1EU1 A;  3GTO A;  3HU2 A;  3X2K A;  3OUG A;  2E7Z A;  4D7Z B;  2NVY A;  2NAP A;  3X2P A;  1SMY D;  4KDL A;  4NOH A;  3X2H A;  3PLX B;  3GTJ A;  2JIQ A;  3HU1 A;  1Q16 A;  2NVX A;  2VPX A;  1TWG A;  4AAY A;  2WB1 A;  1Y5I A;  1UHE A;  1G8J A;  1S3S A;  2AE0 X;  3GTL A;  2EEO B;  2O5J D;  3GTM A;  5DYG A; 
#chains in the Genus database with same CATH homology
 2PI8 A;  3D30 A;  3X2M A;  2GAE A;  3X2N A;  5GM9 A;  4ENG A;  4JCW A;  3X2J A;  2KQA A;  4ZM7 A;  4FFT A;  4FG4 A;  4JP7 A;  3M3G A;  3ENG A;  3X2L A;  3X2O A;  1N10 A;  3SUK A;  1L8F A;  3X2K A;  2G6G A;  4JJO A;  5GLX A;  1OA9 A;  3SUJ A;  4FG2 A;  1BW4 A;  2PNW A;  2HCZ X;  2PIC A;  3X2P A;  3CZB A;  1WC2 A;  3SUM A;  3X2G A;  3X2H A;  4AVR A;  2BH0 A;  2PJJ A;  4FER A;  3X2I A;  4L48 A;  4JS7 A;  5H4U A;  2AE0 X;  2G5D A;  5GLY A;  1OA7 A;  2ENG A;  1BW3 A;  1HD5 A;  3SUL A;  4JP6 A; 
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