3OUGA

Crystal structure of cleaved l-aspartate-alpha-decarboxylase from francisella tularensis
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
108
structure length
107
Chain Sequence
MLISVLKSKISYATVTGKDLFYVSITIDSEIMKQANIIENEKVQVVNLNNGERLETYVIKGEPNSKTIALNGPAARRCEIGDQLFIISYTQVDPTRENIKPKLVDLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of cleaved L-aspartate-alpha-decarboxylase from Francisella tularensis
rcsb
molecule tags Lyase
source organism Francisella tularensis subsp. tularensis
molecule keywords Aspartate 1-decarboxylase
total genus 27
structure length 107
sequence length 108
chains with identical sequence B, C, E, F, G, H, I
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2010-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 3ougA00
4CRZA 1R27A 5T5ID 3HU1A 4CS0A 2Y0SA 2PJHB 3GTQA 2V3VA 3CF2A 2NVXA 1FDIA 1AW8B 4KODA 3HKZA 1R7RA 3HU3A 1EU1A 2R93A 1TWFA 1TMOA 1K83A 2B63A 1DMSA 1OGYA 3IR7A 5DYIA 3ML1A 3FKIA 4AOKB 5T5MD 4KDIA 2R92A 2DMRA 1G8KA 1TWCA 5FTLA 3H0GA 1Y4ZA 3O5AA 3GTJA 1DMRA 1VC3B 4KDLA 2V45A 3DMRA 1H0HA 5FTNA 4GA5A 2VUMA 1S3SA 5C18A 2E2HA 3GTMA 3IR6A 2VPXA 2NVYA 3CQZA 1UHEA 1PQFA 1FDOA 3QC8A 5FTJA 3QQ7A 1TWGA 5DYGA 1AA6A 5FTMA 1CZ4A 1Y5IA 5FTKA 1G8JA 1PQHA 2KI8A 2NYAA 1I50A 3GTPA 1Y1WA 4D7ZB 2JIOA 1CR5A 4C2MA 1E61A 1QCSA 3TM7B 2JA6A 5C1BA 2R7ZA 1E18A 1UHDA 2VPZA 2JA7A 1CZ5A 2YU9A 1TWHA 3TIWA 1WLFA 4GA6A 1QDNA 2WAQA 4RV0A 2PMZA 1H5NA 1E60A 2JIPA 3HU2A 3PLXB 1R9TA 4AONB 4AYBA 5B6CA 2WB1A 2JIRA 2IV2X 2NAPA 2EEOB 1KQGA 1WCMA 3QQ8A 1KQFA 1Y1VA 2JA5A 3OUGA 5EPPA 1IW7D 2JIQA 1Q16A 1PYUB 1SIWA 3IR5A 3QWZA 2VPWA 1E5VA 5GLFA 1SFOA 4CRYG 1YLEA 2E2IA 4AZDA 2E7ZA 4KO8A 1E32A 1PQEA 1PPYA 1PT0A 1TWAA 1PYQA 2VPYA 1PT1A 4QIWA 3GTGA 3GTOA 2JIMA 4DMRA 4AAYA 3GTLA 3GTKA 2C45A 1I3QA 4KLNA
chains in the Genus database with same CATH superfamily
4CRZA 2PJJA 1R27A 5T5ID 3HU1A 1OA9A 4CS0A 2Y0SA 3X2OA 2PI8A 2G6GA 2PJHB 4FFTA 3GTQA 2V3VA 3CF2A 2NVXA 1BW3A 1FDIA 1AW8B 4KODA 3HKZA 1R7RA 3HU3A 1EU1A 2R93A 1TWFA 2GAEA 1TMOA 1K83A 4FERA 4JCWA 2B63A 1DMSA 1OGYA 3IR7A 5DYIA 3ML1A 3SUKA 2ENGA 3FKIA 1ZC1A 4AOKB 2YUJA 5T5MD 4KDIA 2R92A 2DMRA 3X2KA 3SUJA 1L8FA 1G8KA 3SULA 1TWCA 3ENGA 5FTLA 4AVRA 4ZM7A 3H0GA 5GLYA 1Y4ZA 2A6HD 3O5AA 3GTJA 1DMRA 1VC3B 4KDLA 2V45A 3X2JA 3DMRA 2A69D 1H0HA 5FTNA 4GA5A 4JP7A 5GLXA 1WC2A 2VUMA 1S3SA 5C18A 2E2HA 1ZYRD 3GTMA 3IR6A 2VPXA 2NVYA 2AE0X 1N10A 2PNWA 3CQZA 3X2PA 1UHEA 1PQFA 1FDOA 3QC8A 5FTJA 3QQ7A 4JJOA 1TWGA 5DYGA 1AA6A 5FTMA 3SUMA 3CZBA 1CZ4A 1Y5IA 5FTKA 1G8JA 1PQHA 2KI8A 4FG4A 2NYAA 2A6ED 4JS7A 1I50A 5GM9A 4D7ZB 3GTPA 1Y1WA 2JIOA 4FG2A 1CR5A 4C2MA 1E61A 1SMYD 1QCSA 2BH0A 5H4UA 1HD5A 3TM7B 3D30A 2JA6A 5C1BA 2R7ZA 1E18A 1BW4A 1OA7A 1UHDA 2HCZX 2VPZA 4NOHA 2O5JD 2JA7A 2YU9A 1CZ5A 1TWHA 3TIWA 1WLFA 4GA6A 2KQAA 1YNND 1QDNA 4L48A 2WAQA 4RV0A 2PMZA 3M3GA 1H5NA 1E60A 2CW0D 2JIPA 3HU2A 3PLXB 1R9TA 4AONB 4AYBA 5B6CA 1YNJD 2BE5D 2WB1A 2JIRA 2IV2X 2NAPA 3X2GA 2EEOB 1KQGA 3X2LA 1WCMA 3QQ8A 1KQFA 1Y1VA 2JA5A 3OUGA 5EPPA 1IW7D 2PICA 4ENGA 2JIQA 1Q16A 1PYUB 1SIWA 3X2NA 3X2IA 3IR5A 3QWZA 2VPWA 1E5VA 5GLFA 3X2MA 1SFOA 4CRYG 1YLEA 2E2IA 4AZDA 4JP6A 2A68D 2E7ZA 4KO8A 1E32A 1PQEA 1PPYA 1PT0A 1TWAA 1PYQA 2VPYA 2G5DA 1PT1A 4QIWA 3GTGA 3X2HA 3GTOA 2JIMA 4DMRA 4AAYA 3GTLA 3GTKA 2C45A 1I3QA 4KLNA
chains in the Genus database with same CATH topology
4CRZA 2PJJA 1R27A 5T5ID 3HU1A 4CS0A 2Y0SA 2PI8A 2G6GA 2PJHB 3GTQA 2V3VA 3CF2A 2NVXA 1FDIA 1AW8B 4KODA 3HKZA 1R7RA 3HU3A 1EU1A 2R93A 1TWFA 2GAEA 1TMOA 1K83A 2B63A 1DMSA 1OGYA 3IR7A 5DYIA 3ML1A 3FKIA 1ZC1A 4AOKB 2YUJA 5T5MD 4KDIA 2R92A 2DMRA 1G8KA 1TWCA 5FTLA 3H0GA 1Y4ZA 2A6HD 3O5AA 3GTJA 1DMRA 1VC3B 4KDLA 2V45A 3DMRA 2A69D 1H0HA 5FTNA 4GA5A 2VUMA 1S3SA 5C18A 2E2HA 1ZYRD 3GTMA 3IR6A 2VPXA 2NVYA 2AE0X 2PNWA 3CQZA 1UHEA 1PQFA 1FDOA 3QC8A 5FTJA 3QQ7A 1TWGA 5DYGA 1AA6A 5FTMA 3CZBA 1CZ4A 1Y5IA 5FTKA 1G8JA 1PQHA 2KI8A 2NYAA 2A6ED 1I50A 3GTPA 1Y1WA 4D7ZB 2JIOA 1CR5A 4C2MA 1E61A 1SMYD 1QCSA 3TM7B 2JA6A 5C1BA 2R7ZA 1E18A 1UHDA 4NOHA 2VPZA 2JA7A 2O5JD 1CZ5A 2YU9A 1TWHA 3TIWA 1WLFA 4GA6A 1YNND 1QDNA 2WAQA 4RV0A 2PMZA 1H5NA 1E60A 2CW0D 2JIPA 3HU2A 3PLXB 1R9TA 4AONB 4AYBA 5B6CA 1YNJD 2BE5D 2WB1A 2JIRA 2IV2X 2NAPA 2EEOB 1KQGA 1WCMA 3QQ8A 1KQFA 1Y1VA 2JA5A 3OUGA 5EPPA 1IW7D 2PICA 2JIQA 1Q16A 1PYUB 1SIWA 3IR5A 3QWZA 2VPWA 1E5VA 5GLFA 1SFOA 4CRYG 1YLEA 2E2IA 4AZDA 2A68D 2E7ZA 4KO8A 1E32A 1PQEA 1PPYA 1PT0A 1TWAA 1PYQA 2VPYA 2G5DA 1PT1A 4QIWA 3GTGA 3GTOA 2JIMA 4DMRA 4AAYA 3GTLA 3GTKA 2C45A 1I3QA 4KLNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4CRZ A;  1R27 A;  5T5I D;  3HU1 A;  4CS0 A;  2Y0S A;  2PJH B;  3GTQ A;  2V3V A;  3CF2 A;  2NVX A;  1FDI A;  1AW8 B;  4KOD A;  3HKZ A;  1R7R A;  3HU3 A;  1EU1 A;  2R93 A;  1TWF A;  1TMO A;  1K83 A;  2B63 A;  1DMS A;  1OGY A;  3IR7 A;  5DYI A;  3ML1 A;  3FKI A;  4AOK B;  5T5M D;  4KDI A;  2R92 A;  2DMR A;  1G8K A;  1TWC A;  5FTL A;  3H0G A;  1Y4Z A;  3O5A A;  3GTJ A;  1DMR A;  1VC3 B;  4KDL A;  2V45 A;  3DMR A;  1H0H A;  5FTN A;  4GA5 A;  2VUM A;  1S3S A;  5C18 A;  2E2H A;  3GTM A;  3IR6 A;  2VPX A;  2NVY A;  3CQZ A;  1UHE A;  1PQF A;  1FDO A;  3QC8 A;  5FTJ A;  3QQ7 A;  1TWG A;  5DYG A;  1AA6 A;  5FTM A;  1CZ4 A;  1Y5I A;  5FTK A;  1G8J A;  1PQH A;  2KI8 A;  2NYA A;  1I50 A;  3GTP A;  1Y1W A;  4D7Z B;  2JIO A;  1CR5 A;  4C2M A;  1E61 A;  1QCS A;  3TM7 B;  2JA6 A;  5C1B A;  2R7Z A;  1E18 A;  1UHD A;  2VPZ A;  2JA7 A;  1CZ5 A;  2YU9 A;  1TWH A;  3TIW A;  1WLF A;  4GA6 A;  1QDN A;  2WAQ A;  4RV0 A;  2PMZ A;  1H5N A;  1E60 A;  2JIP A;  3HU2 A;  3PLX B;  1R9T A;  4AON B;  4AYB A;  5B6C A;  2WB1 A;  2JIR A;  2IV2 X;  2NAP A;  2EEO B;  1KQG A;  1WCM A;  3QQ8 A;  1KQF A;  1Y1V A;  2JA5 A;  3OUG A;  5EPP A;  1IW7 D;  2JIQ A;  1Q16 A;  1PYU B;  1SIW A;  3IR5 A;  3QWZ A;  2VPW A;  1E5V A;  5GLF A;  1SFO A;  4CRY G;  1YLE A;  2E2I A;  4AZD A;  2E7Z A;  4KO8 A;  1E32 A;  1PQE A;  1PPY A;  1PT0 A;  1TWA A;  1PYQ A;  2VPY A;  1PT1 A;  4QIW A;  3GTG A;  3GTO A;  2JIM A;  4DMR A;  4AAY A;  3GTL A;  3GTK A;  2C45 A;  1I3Q A;  4KLN A; 
#chains in the Genus database with same CATH topology
 4CRZ A;  2PJJ A;  1R27 A;  5T5I D;  3HU1 A;  1OA9 A;  4CS0 A;  2Y0S A;  3X2O A;  2PI8 A;  2G6G A;  2PJH B;  4FFT A;  3GTQ A;  2V3V A;  3CF2 A;  2NVX A;  1BW3 A;  1FDI A;  1AW8 B;  4KOD A;  3HKZ A;  1R7R A;  3HU3 A;  1EU1 A;  2R93 A;  1TWF A;  2GAE A;  1TMO A;  1K83 A;  4FER A;  4JCW A;  2B63 A;  1DMS A;  1OGY A;  3IR7 A;  5DYI A;  3ML1 A;  3SUK A;  2ENG A;  3FKI A;  1ZC1 A;  4AOK B;  2YUJ A;  5T5M D;  4KDI A;  2R92 A;  2DMR A;  3X2K A;  3SUJ A;  1L8F A;  1G8K A;  3SUL A;  1TWC A;  3ENG A;  5FTL A;  4AVR A;  4ZM7 A;  3H0G A;  5GLY A;  1Y4Z A;  2A6H D;  3O5A A;  3GTJ A;  1DMR A;  1VC3 B;  4KDL A;  2V45 A;  3X2J A;  3DMR A;  2A69 D;  1H0H A;  5FTN A;  4GA5 A;  4JP7 A;  5GLX A;  1WC2 A;  2VUM A;  1S3S A;  5C18 A;  2E2H A;  1ZYR D;  3GTM A;  3IR6 A;  2VPX A;  2NVY A;  2AE0 X;  1N10 A;  2PNW A;  3CQZ A;  3X2P A;  1UHE A;  1PQF A;  1FDO A;  3QC8 A;  5FTJ A;  3QQ7 A;  4JJO A;  1TWG A;  5DYG A;  1AA6 A;  5FTM A;  3SUM A;  3CZB A;  1CZ4 A;  1Y5I A;  5FTK A;  1G8J A;  1PQH A;  2KI8 A;  4FG4 A;  2NYA A;  2A6E D;  4JS7 A;  1I50 A;  5GM9 A;  4D7Z B;  3GTP A;  1Y1W A;  2JIO A;  4FG2 A;  1CR5 A;  4C2M A;  1E61 A;  1SMY D;  1QCS A;  2BH0 A;  5H4U A;  1HD5 A;  3TM7 B;  3D30 A;  2JA6 A;  5C1B A;  2R7Z A;  1E18 A;  1BW4 A;  1OA7 A;  1UHD A;  2HCZ X;  2VPZ A;  4NOH A;  2O5J D;  2JA7 A;  2YU9 A;  1CZ5 A;  1TWH A;  3TIW A;  1WLF A;  4GA6 A;  2KQA A;  1YNN D;  1QDN A;  4L48 A;  2WAQ A;  4RV0 A;  2PMZ A;  3M3G A;  1H5N A;  1E60 A;  2CW0 D;  2JIP A;  3HU2 A;  3PLX B;  1R9T A;  4AON B;  4AYB A;  5B6C A;  1YNJ D;  2BE5 D;  2WB1 A;  2JIR A;  2IV2 X;  2NAP A;  3X2G A;  2EEO B;  1KQG A;  3X2L A;  1WCM A;  3QQ8 A;  1KQF A;  1Y1V A;  2JA5 A;  3OUG A;  5EPP A;  1IW7 D;  2PIC A;  4ENG A;  2JIQ A;  1Q16 A;  1PYU B;  1SIW A;  3X2N A;  3X2I A;  3IR5 A;  3QWZ A;  2VPW A;  1E5V A;  5GLF A;  3X2M A;  1SFO A;  4CRY G;  1YLE A;  2E2I A;  4AZD A;  4JP6 A;  2A68 D;  2E7Z A;  4KO8 A;  1E32 A;  1PQE A;  1PPY A;  1PT0 A;  1TWA A;  1PYQ A;  2VPY A;  2G5D A;  1PT1 A;  4QIW A;  3GTG A;  3X2H A;  3GTO A;  2JIM A;  4DMR A;  4AAY A;  3GTL A;  3GTK A;  2C45 A;  1I3Q A;  4KLN A; 
#chains in the Genus database with same CATH homology
 4CRZ A;  2PJJ A;  1R27 A;  5T5I D;  3HU1 A;  4CS0 A;  2Y0S A;  2PI8 A;  2G6G A;  2PJH B;  3GTQ A;  2V3V A;  3CF2 A;  2NVX A;  1FDI A;  1AW8 B;  4KOD A;  3HKZ A;  1R7R A;  3HU3 A;  1EU1 A;  2R93 A;  1TWF A;  2GAE A;  1TMO A;  1K83 A;  2B63 A;  1DMS A;  1OGY A;  3IR7 A;  5DYI A;  3ML1 A;  3FKI A;  1ZC1 A;  4AOK B;  2YUJ A;  5T5M D;  4KDI A;  2R92 A;  2DMR A;  1G8K A;  1TWC A;  5FTL A;  3H0G A;  1Y4Z A;  2A6H D;  3O5A A;  3GTJ A;  1DMR A;  1VC3 B;  4KDL A;  2V45 A;  3DMR A;  2A69 D;  1H0H A;  5FTN A;  4GA5 A;  2VUM A;  1S3S A;  5C18 A;  2E2H A;  1ZYR D;  3GTM A;  3IR6 A;  2VPX A;  2NVY A;  2AE0 X;  2PNW A;  3CQZ A;  1UHE A;  1PQF A;  1FDO A;  3QC8 A;  5FTJ A;  3QQ7 A;  1TWG A;  5DYG A;  1AA6 A;  5FTM A;  3CZB A;  1CZ4 A;  1Y5I A;  5FTK A;  1G8J A;  1PQH A;  2KI8 A;  2NYA A;  2A6E D;  1I50 A;  3GTP A;  1Y1W A;  4D7Z B;  2JIO A;  1CR5 A;  4C2M A;  1E61 A;  1SMY D;  1QCS A;  3TM7 B;  2JA6 A;  5C1B A;  2R7Z A;  1E18 A;  1UHD A;  4NOH A;  2VPZ A;  2JA7 A;  2O5J D;  1CZ5 A;  2YU9 A;  1TWH A;  3TIW A;  1WLF A;  4GA6 A;  1YNN D;  1QDN A;  2WAQ A;  4RV0 A;  2PMZ A;  1H5N A;  1E60 A;  2CW0 D;  2JIP A;  3HU2 A;  3PLX B;  1R9T A;  4AON B;  4AYB A;  5B6C A;  1YNJ D;  2BE5 D;  2WB1 A;  2JIR A;  2IV2 X;  2NAP A;  2EEO B;  1KQG A;  1WCM A;  3QQ8 A;  1KQF A;  1Y1V A;  2JA5 A;  3OUG A;  5EPP A;  1IW7 D;  2PIC A;  2JIQ A;  1Q16 A;  1PYU B;  1SIW A;  3IR5 A;  3QWZ A;  2VPW A;  1E5V A;  5GLF A;  1SFO A;  4CRY G;  1YLE A;  2E2I A;  4AZD A;  2A68 D;  2E7Z A;  4KO8 A;  1E32 A;  1PQE A;  1PPY A;  1PT0 A;  1TWA A;  1PYQ A;  2VPY A;  2G5D A;  1PT1 A;  4QIW A;  3GTG A;  3GTO A;  2JIM A;  4DMR A;  4AAY A;  3GTL A;  3GTK A;  2C45 A;  1I3Q A;  4KLN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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